Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 85 of 290
Found at i:25928665 original size:30 final size:30
Alignment explanation
Indices: 25928601--25928665 Score: 78
Period size: 30 Copynumber: 2.2 Consensus size: 30
25928591 AATTATACTT
* **
25928601 TAATTTTTTAAAAATAATAAAAAATTATTT
1 TAATTTTTTAAAAATAATAAAAAAATATAA
*
25928631 TAATTTTTTAAAAATTATAAAAATAATA-AA
1 TAATTTTTTAAAAATAATAAAAA-AATATAA
25928661 TAATT
1 TAATT
25928666 AAAATTAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
30 27 0.90
31 3 0.10
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (30 bp):
TAATTTTTTAAAAATAATAAAAAAATATAA
Found at i:25930161 original size:56 final size:56
Alignment explanation
Indices: 25930082--25930189 Score: 153
Period size: 56 Copynumber: 1.9 Consensus size: 56
25930072 CGCCCTTGCC
* *
25930082 TCGAGTCCCTCGCCACCTTGCTAAGTGCCAACACCACCTAAGCACTTCGCCCAGAG
1 TCGAGTCCCTCACCACCTCGCTAAGTGCCAACACCACCTAAGCACTTCGCCCAGAG
* * * **
25930138 TCGAGTCCTTCACCACCTCGCTAAGTTCTAACACCACCTGGGCACTTCGCCC
1 TCGAGTCCCTCACCACCTCGCTAAGTGCCAACACCACCTAAGCACTTCGCCC
25930190 CGAACCCCTC
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
56 45 1.00
ACGTcount: A:0.21, C:0.42, G:0.17, T:0.20
Consensus pattern (56 bp):
TCGAGTCCCTCACCACCTCGCTAAGTGCCAACACCACCTAAGCACTTCGCCCAGAG
Found at i:25933283 original size:21 final size:21
Alignment explanation
Indices: 25933259--25933301 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
25933249 AAATTATATT
* *
25933259 AATAATGTTTTATTAAATGAA
1 AATAATCTTTTAGTAAATGAA
*
25933280 AATAATCTTTTAGTCAATGAA
1 AATAATCTTTTAGTAAATGAA
25933301 A
1 A
25933302 TTACATATGT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.47, C:0.05, G:0.09, T:0.40
Consensus pattern (21 bp):
AATAATCTTTTAGTAAATGAA
Found at i:25933968 original size:12 final size:11
Alignment explanation
Indices: 25933949--25933991 Score: 50
Period size: 12 Copynumber: 3.7 Consensus size: 11
25933939 ATTAATTATT
*
25933949 TTTAAAAAAAA
1 TTTAAAAAATA
25933960 TTATAAAAAATA
1 TT-TAAAAAATA
*
25933972 TTTTATAAAATA
1 -TTTAAAAAATA
25933984 TTTAAAAA
1 TTTAAAAA
25933992 TATAAAATTA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
11 9 0.33
12 16 0.59
13 2 0.07
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (11 bp):
TTTAAAAAATA
Found at i:25937960 original size:5 final size:5
Alignment explanation
Indices: 25937950--25937977 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
25937940 GTAATTGTTT
25937950 TTATA TTATA TTATA TTATA TTATA TTA
1 TTATA TTATA TTATA TTATA TTATA TTA
25937978 AACAAATAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (5 bp):
TTATA
Found at i:25938052 original size:13 final size:11
Alignment explanation
Indices: 25938026--25938101 Score: 55
Period size: 12 Copynumber: 6.4 Consensus size: 11
25938016 TAAATGAAAC
25938026 AAAAAGAATAGA
1 AAAAAGAA-AGA
25938038 AAAAGAGAAAG-
1 AAAA-AGAAAGA
*
25938049 GAAAAGAAACGA
1 AAAAAGAAA-GA
*
25938061 AACAAAGAAGGGA
1 AA-AAAGAA-AGA
25938074 AAGAAAGAAAGA
1 AA-AAAGAAAGA
*
25938086 AAAAGGGAAAGA
1 AAAA-AGAAAGA
25938098 AAAA
1 AAAA
25938102 GAAGGATAAA
Statistics
Matches: 52, Mismatches: 6, Indels: 12
0.74 0.09 0.17
Matches are distributed among these distances:
10 5 0.10
11 6 0.12
12 21 0.40
13 20 0.38
ACGTcount: A:0.71, C:0.03, G:0.25, T:0.01
Consensus pattern (11 bp):
AAAAAGAAAGA
Found at i:25938814 original size:17 final size:17
Alignment explanation
Indices: 25938785--25938828 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
25938775 TGTGTGATTA
25938785 ATTGAATTGATATGAAT
1 ATTGAATTGATATGAAT
*
25938802 ATTG-ATTGTATATGAAA
1 ATTGAATTG-ATATGAAT
*
25938819 AGTGAATTGA
1 ATTGAATTGA
25938829 AGAACCTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
16 4 0.17
17 15 0.65
18 4 0.17
ACGTcount: A:0.41, C:0.00, G:0.20, T:0.39
Consensus pattern (17 bp):
ATTGAATTGATATGAAT
Found at i:25943574 original size:12 final size:12
Alignment explanation
Indices: 25943557--25943583 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
25943547 TGTACAACAA
25943557 CCTCAACCAGCT
1 CCTCAACCAGCT
25943569 CCTCAACCAGCT
1 CCTCAACCAGCT
25943581 CCT
1 CCT
25943584 AAGATACTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.22, C:0.52, G:0.07, T:0.19
Consensus pattern (12 bp):
CCTCAACCAGCT
Found at i:25948300 original size:18 final size:17
Alignment explanation
Indices: 25948267--25948302 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
25948257 ACTAAATTGG
25948267 AAATGAGAAAAATTAAT
1 AAATGAGAAAAATTAAT
*
25948284 AAATGATAAATAATTAAT
1 AAATGAGAAA-AATTAAT
25948302 A
1 A
25948303 GGAAATAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.64, C:0.00, G:0.08, T:0.28
Consensus pattern (17 bp):
AAATGAGAAAAATTAAT
Found at i:25956028 original size:17 final size:16
Alignment explanation
Indices: 25955992--25956034 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
25955982 GTAAAAAAGA
*
25955992 AATATAAAAAAATAAT
1 AATATAAAAAAATAAC
*
25956008 AATATAAAAAATATAGC
1 AATATAAAAAA-ATAAC
25956025 AATAGTAAAA
1 AATA-TAAAA
25956035 TTATGATATT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
16 11 0.48
17 7 0.30
18 5 0.22
ACGTcount: A:0.70, C:0.02, G:0.05, T:0.23
Consensus pattern (16 bp):
AATATAAAAAAATAAC
Found at i:25956110 original size:22 final size:21
Alignment explanation
Indices: 25956078--25956146 Score: 66
Period size: 22 Copynumber: 3.0 Consensus size: 21
25956068 ATAATACTTA
25956078 AAATATAATAATAAAAAAAATAT
1 AAATA-AATAATAAAAAAAA-AT
* *
25956101 AAATAAATAAGAAATAAAAACT
1 AAATAAATAATAAA-AAAAAAT
*
25956123 AGATAAATAATAAGAAAATAAAT
1 AAATAAATAATAA-AAAA-AAAT
25956146 A
1 A
25956147 GATGAAAATA
Statistics
Matches: 38, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
22 23 0.61
23 15 0.39
ACGTcount: A:0.72, C:0.01, G:0.04, T:0.22
Consensus pattern (21 bp):
AAATAAATAATAAAAAAAAAT
Found at i:25956164 original size:3 final size:3
Alignment explanation
Indices: 25956156--25956316 Score: 59
Period size: 3 Copynumber: 55.0 Consensus size: 3
25956146 AGATGAAAAT
* * * *
25956156 ATA ATA ATA GTA ATA AT- ACA ATA GTA GA-A ATA ATA AAA AGTA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA A-TA ATA
* * * * * * *
25956201 ATA A-A ATA TTAA ATA GTA A-A AAA ATA ATA GTA ACA GTA AT- TTA
1 ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * *
25956244 A-A AAA ATG ATA ATA GTA ATA ATA ATA ATG ATA ATA AT- ATAA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA
* * * *
25956288 ATA GTA A-A ATA ATG ATA GTA GTA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
25956317 TATATTAAAT
Statistics
Matches: 112, Mismatches: 34, Indels: 24
0.66 0.20 0.14
Matches are distributed among these distances:
2 13 0.12
3 93 0.83
4 6 0.05
ACGTcount: A:0.61, C:0.01, G:0.09, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:25959704 original size:19 final size:21
Alignment explanation
Indices: 25959673--25959725 Score: 76
Period size: 18 Copynumber: 2.7 Consensus size: 21
25959663 AAAAATATGA
*
25959673 ATTTTGAAATTTTTATAAA-T
1 ATTTTGTAATTTTTATAAATT
25959693 ATTTT-TAA-TTTTATAAATT
1 ATTTTGTAATTTTTATAAATT
25959712 ATTTTGTAATTTTT
1 ATTTTGTAATTTTT
25959726 TAATAAAGTT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
18 9 0.31
19 8 0.28
20 8 0.28
21 4 0.14
ACGTcount: A:0.34, C:0.00, G:0.04, T:0.62
Consensus pattern (21 bp):
ATTTTGTAATTTTTATAAATT
Found at i:25959706 original size:18 final size:20
Alignment explanation
Indices: 25959673--25959724 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 20
25959663 AAAAATATGA
*
25959673 ATTTTGAAATTTTTATAAA-T
1 ATTTTGTAA-TTTTATAAATT
25959693 ATTTT-TAATTTTATAAATT
1 ATTTTGTAATTTTATAAATT
25959712 ATTTTGTAATTTT
1 ATTTTGTAATTTT
25959725 TTAATAAAGT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
18 9 0.31
19 8 0.28
20 12 0.41
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.62
Consensus pattern (20 bp):
ATTTTGTAATTTTATAAATT
Found at i:25960647 original size:26 final size:26
Alignment explanation
Indices: 25960618--25960670 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
25960608 AGAATGTAAG
25960618 ATATGACTAAGAATGGTCATGATAGT
1 ATATGACTAAGAATGGTCATGATAGT
25960644 ATATGACTAAGAATGGTCATGATAGT
1 ATATGACTAAGAATGGTCATGATAGT
25960670 A
1 A
25960671 CTAACAACAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.30
Consensus pattern (26 bp):
ATATGACTAAGAATGGTCATGATAGT
Found at i:25962577 original size:20 final size:21
Alignment explanation
Indices: 25962552--25962604 Score: 76
Period size: 18 Copynumber: 2.7 Consensus size: 21
25962542 AAAAAAATGA
25962552 ATTTTGGAATTTTTATAAA-T
1 ATTTTGGAATTTTTATAAATT
25962572 ATTTT-GAA-TTTTATAAATT
1 ATTTTGGAATTTTTATAAATT
*
25962591 ATTTTGCAATTTTT
1 ATTTTGGAATTTTT
25962605 GTTGATAAAC
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
18 9 0.31
19 9 0.31
20 7 0.24
21 4 0.14
ACGTcount: A:0.32, C:0.02, G:0.08, T:0.58
Consensus pattern (21 bp):
ATTTTGGAATTTTTATAAATT
Found at i:25962582 original size:19 final size:20
Alignment explanation
Indices: 25962552--25962604 Score: 74
Period size: 19 Copynumber: 2.6 Consensus size: 20
25962542 AAAAAAATGA
25962552 ATTTTGGAATTTTTATAAA-T
1 ATTTT-GAATTTTTATAAATT
25962572 ATTTTGAA-TTTTATAAATT
1 ATTTTGAATTTTTATAAATT
25962591 ATTTTGCAATTTTT
1 ATTTTG-AATTTTT
25962605 GTTGATAAAC
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
18 9 0.30
19 10 0.33
20 7 0.23
21 4 0.13
ACGTcount: A:0.32, C:0.02, G:0.08, T:0.58
Consensus pattern (20 bp):
ATTTTGAATTTTTATAAATT
Found at i:25962585 original size:18 final size:19
Alignment explanation
Indices: 25962552--25962603 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 19
25962542 AAAAAAATGA
25962552 ATTTTGGAATTTTTATAAA-T
1 ATTTT-GAA-TTTTATAAATT
25962572 ATTTTGAATTTTATAAATT
1 ATTTTGAATTTTATAAATT
25962591 ATTTTGCAATTTT
1 ATTTTG-AATTTT
25962604 TGTTGATAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
18 9 0.30
19 10 0.33
20 11 0.37
ACGTcount: A:0.33, C:0.02, G:0.08, T:0.58
Consensus pattern (19 bp):
ATTTTGAATTTTATAAATT
Found at i:25964993 original size:20 final size:20
Alignment explanation
Indices: 25964970--25965025 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 20
25964960 TTAAATTCTA
25964970 AAAGATAAATAAAAATAATT
1 AAAGATAAATAAAAATAATT
* *
25964990 AAAGATAATTAAAGATAATT
1 AAAGATAAATAAAAATAATT
* *
25965010 TAAGATAAATGAAAAT
1 AAAGATAAATAAAAAT
25965026 GAATCCTAAA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.64, C:0.00, G:0.09, T:0.27
Consensus pattern (20 bp):
AAAGATAAATAAAAATAATT
Found at i:25965014 original size:10 final size:10
Alignment explanation
Indices: 25964970--25965017 Score: 69
Period size: 10 Copynumber: 4.8 Consensus size: 10
25964960 TTAAATTCTA
*
25964970 AAAGATAAAT
1 AAAGATAATT
*
25964980 AAAAATAATT
1 AAAGATAATT
25964990 AAAGATAATT
1 AAAGATAATT
25965000 AAAGATAATT
1 AAAGATAATT
*
25965010 TAAGATAA
1 AAAGATAA
25965018 ATGAAAATGA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
10 34 1.00
ACGTcount: A:0.65, C:0.00, G:0.08, T:0.27
Consensus pattern (10 bp):
AAAGATAATT
Found at i:25970265 original size:46 final size:45
Alignment explanation
Indices: 25970209--25970375 Score: 151
Period size: 46 Copynumber: 3.6 Consensus size: 45
25970199 TGGTATGTGT
25970209 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGGGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCC-CATTATGGGA
* * * * *
25970255 GCCAGTGTAAGACATGTCTGAGACCTACATCGG--TATTGA-GACGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCCATT-ATG--G-GA
* * **
25970301 GCTAGTGTAAGACATGCCTAGGACATGCATCGGCCTCGAGTTATACGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCC-C-A-TTATGGGA
*
25970349 GCTAGTGTAAGACCTGTCTGGGACATG
1 GCTAGTGTAAGACATGTCTGGGACATG
25970376 GCGTCAGCTT
Statistics
Matches: 94, Mismatches: 17, Indels: 18
0.73 0.13 0.14
Matches are distributed among these distances:
43 4 0.04
44 1 0.01
45 1 0.01
46 58 0.62
48 26 0.28
50 2 0.02
51 2 0.02
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.23
Consensus pattern (45 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCCATTATGGGA
Found at i:25970472 original size:49 final size:49
Alignment explanation
Indices: 25970395--25970525 Score: 147
Period size: 49 Copynumber: 2.7 Consensus size: 49
25970385 TATTGTGTGT
* * *
25970395 CAGTGTAAGACCTGTCTGGGACATGGCATTGACAC-CAATAGATGAAAGC
1 CAGTGTAAAAACTGTCTGGGACATGGCATCGAC-CTCAATAGATGAAAGC
* * * * *
25970444 CATTGTAAAAACTGTCTGGGACACGGCATCGACCTCGATATATGAAAGT
1 CAGTGTAAAAACTGTCTGGGACATGGCATCGACCTCAATAGATGAAAGC
* * *
25970493 CAGTGTAAGACCTGTTTGGGACATGGCATCGAC
1 CAGTGTAAAAACTGTCTGGGACATGGCATCGAC
25970526 TTTGATGTGC
Statistics
Matches: 68, Mismatches: 13, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
48 1 0.01
49 67 0.99
ACGTcount: A:0.31, C:0.21, G:0.26, T:0.23
Consensus pattern (49 bp):
CAGTGTAAAAACTGTCTGGGACATGGCATCGACCTCAATAGATGAAAGC
Found at i:25973770 original size:30 final size:30
Alignment explanation
Indices: 25973736--25973792 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 30
25973726 GCCTAGGGGT
* *
25973736 AAAATCGTAATTTTTAC-AAAGTTTAAGGGC
1 AAAATAGTAA-TTTTACTAAAGTATAAGGGC
*
25973766 AAAATAGTCATTTTACTAAAGTATAAG
1 AAAATAGTAATTTTACTAAAGTATAAG
25973793 TTTTAAGTTG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
29 6 0.26
30 17 0.74
ACGTcount: A:0.44, C:0.09, G:0.14, T:0.33
Consensus pattern (30 bp):
AAAATAGTAATTTTACTAAAGTATAAGGGC
Found at i:25976982 original size:21 final size:20
Alignment explanation
Indices: 25976958--25976997 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
25976948 ATATTCAAGT
25976958 TCCACACGGGCGTGTTGCCCA
1 TCCACACGGGCGTG-TGCCCA
*
25976979 TCCACATGGGCGTGTGCCC
1 TCCACACGGGCGTGTGCCC
25976998 TGTGTCAAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.12, C:0.38, G:0.30, T:0.20
Consensus pattern (20 bp):
TCCACACGGGCGTGTGCCCA
Found at i:25979218 original size:5 final size:5
Alignment explanation
Indices: 25979208--25979264 Score: 57
Period size: 5 Copynumber: 11.8 Consensus size: 5
25979198 TCAACATCTA
* * *
25979208 AAAAT AAAAT AATAA- ATAAT AAAAT AAAGT ACAAT AAAAT AAAAT -AAA-
1 AAAAT AAAAT AA-AAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT
25979256 AAAAT AAAA
1 AAAAT AAAA
25979265 ATTGGGTTGT
Statistics
Matches: 42, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
4 8 0.19
5 32 0.76
6 2 0.05
ACGTcount: A:0.77, C:0.02, G:0.02, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:25988915 original size:29 final size:29
Alignment explanation
Indices: 25988861--25988916 Score: 69
Period size: 29 Copynumber: 1.9 Consensus size: 29
25988851 AATGTGACTG
* *
25988861 GGCCTAACGGGTCATATAAGTGTGATTTA
1 GGCCTAACGGGCCATATAAGTATGATTTA
*
25988890 GGCCTAATGGGCCATATGAA-TATGATT
1 GGCCTAACGGGCCATAT-AAGTATGATT
25988917 GGGCTTAGTG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
29 21 0.91
30 2 0.09
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (29 bp):
GGCCTAACGGGCCATATAAGTATGATTTA
Found at i:25996266 original size:16 final size:16
Alignment explanation
Indices: 25996247--25996283 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
25996237 GTCGAAATGC
25996247 CGAAATGCCGAAAAGT
1 CGAAATGCCGAAAAGT
*
25996263 CGAAATGCTGAAAAGT
1 CGAAATGCCGAAAAGT
25996279 CGAAA
1 CGAAA
25996284 GTTTGGCTAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.46, C:0.16, G:0.24, T:0.14
Consensus pattern (16 bp):
CGAAATGCCGAAAAGT
Found at i:25996282 original size:24 final size:24
Alignment explanation
Indices: 25996233--25996283 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
25996223 ATGTATAGGA
*
25996233 AAAAGTCGAAATGCCGAAATGCCG
1 AAAAGTCGAAATGCCGAAAAGCCG
* *
25996257 AAAAGTCGAAATGCTGAAAAGTCG
1 AAAAGTCGAAATGCCGAAAAGCCG
25996281 AAA
1 AAA
25996284 GTTTGGCTAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.47, C:0.16, G:0.24, T:0.14
Consensus pattern (24 bp):
AAAAGTCGAAATGCCGAAAAGCCG
Found at i:25996543 original size:29 final size:29
Alignment explanation
Indices: 25996510--25996593 Score: 96
Period size: 29 Copynumber: 2.9 Consensus size: 29
25996500 ATATGAATGG
*
25996510 GCCTAACGGGCCATATAAATGTGATTTAA
1 GCCTAATGGGCCATATAAATGTGATTTAA
* * * **
25996539 GCCTAATGGGCCATATACAGGTAATTTGG
1 GCCTAATGGGCCATATAAATGTGATTTAA
* *
25996568 GCCTAATGGGCCATATGAATATGATT
1 GCCTAATGGGCCATATAAATGTGATT
25996594 GGGCTTAGTG
Statistics
Matches: 44, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
29 44 1.00
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.29
Consensus pattern (29 bp):
GCCTAATGGGCCATATAAATGTGATTTAA
Found at i:26005436 original size:13 final size:13
Alignment explanation
Indices: 26005418--26005442 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26005408 TGTGGGTTCA
26005418 CACGGCCATGTCG
1 CACGGCCATGTCG
26005431 CACGGCCATGTC
1 CACGGCCATGTC
26005443 TTGCTTCGTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.40, G:0.28, T:0.16
Consensus pattern (13 bp):
CACGGCCATGTCG
Found at i:26009386 original size:327 final size:326
Alignment explanation
Indices: 26008776--26009430 Score: 1283
Period size: 327 Copynumber: 2.0 Consensus size: 326
26008766 AACCAAGAGT
26008776 ACTAGTAATTACCTTCTTTTATTATCTAGCCTAAAAATTAAGGGATTTGGTTATCTAAACTAATT
1 ACTAGTAATTACCTTCTTTTATTATCTAGCCTAAAAATTAAGGGATTTGGTTATCTAAACTAATT
*
26008841 AACTAAACTAAGAGTGCACCGAGAGAAGATTGGAAAAAAGCTTTTGGGAAAGCTCAATTGATTAA
66 AACTAAACTAAGAGTGCACCGAGAGAAGATTGGAAAAAAGCTTTTGGGAAAACTCAATTGATTAA
26008906 GACAATAACCAAGGAAAAATCCACCTAGATTTCACTTGTTATTTGACTCTGAATCAGATGATTTA
131 GACAATAACCAAGGAAAAATCCACCTAGATTTCACTTGTTATTTGACTCTGAATCAGATGATTTA
26008971 TTCATTTGACTTGATCCATAGAAATCCCTAAATTATATTATTATCTCTCTCGAGACTAATAACGT
196 TTCATTTGACTTGATCCATAGAAATCCCTAAATTATATTATTATCTCTCTCGAGACTAATAACGT
26009036 CTAACCCTAGGTTGATTAATTGAAATCTCTTTCTAATTAACACCTAGTGTTGCATTAACTCGATC
261 CTAACCCTAGGTTGATTAATTGAAATCTCTTTCTAATTAACACCTAGTGTTGCATTAACTCGATC
26009101 A
326 A
26009102 ACTAGTAATTACCTTCTTTTTATTATCTAGCCTAAAAATTAAGGGATTTGGTTATCTAAACTAAT
1 ACTAGTAATTACCTTC-TTTTATTATCTAGCCTAAAAATTAAGGGATTTGGTTATCTAAACTAAT
26009167 TAACTAAACTAAGAGTGCACCGAGAGAAGATTGGAAAAAAGCTTTTGGGAAAACTCAATTGATTA
65 TAACTAAACTAAGAGTGCACCGAGAGAAGATTGGAAAAAAGCTTTTGGGAAAACTCAATTGATTA
26009232 AGACAATAACCAAGGAAAAATCCACCTAGATTTCACTTGTTATTTGACTCTGAATCAGATGATTT
130 AGACAATAACCAAGGAAAAATCCACCTAGATTTCACTTGTTATTTGACTCTGAATCAGATGATTT
*
26009297 ATTCATTTGACTTGATCCATAGAAATCCCTAAATTATATTATTATCTCTCTCGATACTAATAACG
195 ATTCATTTGACTTGATCCATAGAAATCCCTAAATTATATTATTATCTCTCTCGAGACTAATAACG
26009362 TCTAACCCTAGGTTGATTAATTGAAATCTCTTTCTAATTAACACCTAGTGTTGCATTAACTCGAT
260 TCTAACCCTAGGTTGATTAATTGAAATCTCTTTCTAATTAACACCTAGTGTTGCATTAACTCGAT
26009427 CA
325 CA
26009429 AC
1 AC
26009431 GGATCCCCTT
Statistics
Matches: 326, Mismatches: 2, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
326 16 0.05
327 310 0.95
ACGTcount: A:0.35, C:0.17, G:0.13, T:0.34
Consensus pattern (326 bp):
ACTAGTAATTACCTTCTTTTATTATCTAGCCTAAAAATTAAGGGATTTGGTTATCTAAACTAATT
AACTAAACTAAGAGTGCACCGAGAGAAGATTGGAAAAAAGCTTTTGGGAAAACTCAATTGATTAA
GACAATAACCAAGGAAAAATCCACCTAGATTTCACTTGTTATTTGACTCTGAATCAGATGATTTA
TTCATTTGACTTGATCCATAGAAATCCCTAAATTATATTATTATCTCTCTCGAGACTAATAACGT
CTAACCCTAGGTTGATTAATTGAAATCTCTTTCTAATTAACACCTAGTGTTGCATTAACTCGATC
A
Found at i:26012724 original size:127 final size:126
Alignment explanation
Indices: 26012565--26013016 Score: 539
Period size: 127 Copynumber: 3.5 Consensus size: 126
26012555 AGTCCAATGA
* * * * * *
26012565 AAAACCGAAACCCAGCACGGTAGGGCACGATTCCTCGAATTTCCAAACATTGAACATTGCCTTGC
1 AAAATCGAAACCCAGCACGATAGGACACGATTCCTCGAATTTCCAAACACTAAACATTGCCTTGT
** * * * * * *
26012630 TTTAACATTTAGAAAACACGAGTAAAATTCTAAAGGAAAATTCAATCATTTTGAACAAATCG
66 TTTAGTATTTGGAAAACACGAGTGAAATTATAAAGGAATATTCGATTATTTTGAACAAA-CG
* * * * *
26012692 AAAATCGTAACCCAGCACGATTGGACACGATTCCCCGCATTTCCAAACACTAAATATTGCCTTGT
1 AAAATCGAAACCCAGCACGATAGGACACGATTCCTCGAATTTCCAAACACTAAACATTGCCTTGT
* *
26012757 TTTAGTATTTGGAAAACACAAGTGAAATTTTAAAGGAATATTCGATTATTTTGAACAAACCG
66 TTTAGTATTTGGAAAACACGAGTGAAATTATAAAGGAATATTCGATTATTTTGAACAAA-CG
* * * * * * *
26012819 GAAATCGAAACCCAGCACGATTGGACACTATTCC-CCACATTTCCAAACACTGAATATTTCCTTG
1 AAAATCGAAACCCAGCACGATAGGACACGATTCCTCGA-ATTTCCAAACACTAAACATTGCCTTG
*
26012883 TTTTAGTATTTGGAAAACACGAGTGAAATTATAAAAGGAATATTCGATTATTTTGAACGAACG
65 TTTTAGTATTTGGAAAACACGAGTGAAATTAT-AAAGGAATATTCGATTATTTTGAACAAACG
* * *
26012946 AGAAATCGAAACCTAGTACGATAGGGCACGATTCCTCGAATTTCCAAACA-TCAAACATTGCCTT
1 A-AAATCGAAACCCAGCACGATAGGACACGATTCCTCGAATTTCCAAACACT-AAACATTGCCTT
26013010 CGTTTTA
64 -GTTTTA
26013017 AAGAATTTTC
Statistics
Matches: 278, Mismatches: 41, Indels: 10
0.84 0.12 0.03
Matches are distributed among these distances:
126 1 0.00
127 194 0.70
128 75 0.27
129 8 0.03
ACGTcount: A:0.37, C:0.21, G:0.15, T:0.27
Consensus pattern (126 bp):
AAAATCGAAACCCAGCACGATAGGACACGATTCCTCGAATTTCCAAACACTAAACATTGCCTTGT
TTTAGTATTTGGAAAACACGAGTGAAATTATAAAGGAATATTCGATTATTTTGAACAAACG
Found at i:26017800 original size:10 final size:10
Alignment explanation
Indices: 26017779--26017830 Score: 59
Period size: 10 Copynumber: 5.1 Consensus size: 10
26017769 AATTAAATTC
26017779 TAAAAGATAAA
1 TAAAA-ATAAA
26017790 TAAAAATAAA
1 TAAAAATAAA
* *
26017800 TAAATATAAT
1 TAAAAATAAA
*
26017810 TAAATATAAA
1 TAAAAATAAA
*
26017820 TGAAAATAAA
1 TAAAAATAAA
26017830 T
1 T
26017831 CCTAAAATTA
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
10 31 0.86
11 5 0.14
ACGTcount: A:0.69, C:0.00, G:0.04, T:0.27
Consensus pattern (10 bp):
TAAAAATAAA
Found at i:26028687 original size:16 final size:16
Alignment explanation
Indices: 26028663--26028696 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
26028653 AATGCCGAAG
*
26028663 TTTCAGCTTTTTGACT
1 TTTCAGCTTTTCGACT
*
26028679 TTTCGGCTTTTCGACT
1 TTTCAGCTTTTCGACT
26028695 TT
1 TT
26028697 CGTCGATTCG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.09, C:0.21, G:0.15, T:0.56
Consensus pattern (16 bp):
TTTCAGCTTTTCGACT
Found at i:26036125 original size:8 final size:8
Alignment explanation
Indices: 26036116--26036152 Score: 67
Period size: 8 Copynumber: 4.8 Consensus size: 8
26036106 TTTATTTTAT
26036116 TTTATTA-
1 TTTATTAC
26036123 TTTATTAC
1 TTTATTAC
26036131 TTTATTAC
1 TTTATTAC
26036139 TTTATTAC
1 TTTATTAC
26036147 TTTATT
1 TTTATT
26036153 TGTTTGGTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
7 7 0.24
8 22 0.76
ACGTcount: A:0.24, C:0.08, G:0.00, T:0.68
Consensus pattern (8 bp):
TTTATTAC
Found at i:26036143 original size:20 final size:18
Alignment explanation
Indices: 26036087--26036144 Score: 57
Period size: 20 Copynumber: 3.2 Consensus size: 18
26036077 AGACAACCCA
26036087 ATTTTTA-TTT-TTCTTT
1 ATTTTTACTTTATTCTTT
* *
26036103 ATTTTTATTTTATTTTATT
1 ATTTTTACTTTATTCT-TT
26036122 ATTTATTACTTTATTACTTT
1 ATTT-TTACTTTATT-CTTT
26036142 ATT
1 ATT
26036145 ACTTTATTTG
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
16 7 0.21
17 3 0.09
18 3 0.09
19 6 0.18
20 14 0.41
21 1 0.03
ACGTcount: A:0.21, C:0.05, G:0.00, T:0.74
Consensus pattern (18 bp):
ATTTTTACTTTATTCTTT
Found at i:26036144 original size:16 final size:15
Alignment explanation
Indices: 26036091--26036152 Score: 67
Period size: 16 Copynumber: 4.1 Consensus size: 15
26036081 AACCCAATTT
26036091 TTATTT-TT-CTTTA
1 TTATTTATTACTTTA
*
26036104 TT-TTTATTTTATTTTA
1 TTATTTA--TTACTTTA
26036120 TTATTTATTACTTTA
1 TTATTTATTACTTTA
26036135 TTACTTTATTACTTTA
1 TTA-TTTATTACTTTA
26036151 TT
1 TT
26036153 TGTTTGGTTA
Statistics
Matches: 41, Mismatches: 2, Indels: 9
0.79 0.04 0.17
Matches are distributed among these distances:
12 3 0.07
13 2 0.05
15 12 0.29
16 20 0.49
17 4 0.10
ACGTcount: A:0.21, C:0.06, G:0.00, T:0.73
Consensus pattern (15 bp):
TTATTTATTACTTTA
Found at i:26038492 original size:42 final size:42
Alignment explanation
Indices: 26038445--26038553 Score: 121
Period size: 42 Copynumber: 2.6 Consensus size: 42
26038435 TAAGATTCCT
* * *
26038445 TATAAGACCATATCCGAGATATGGCCTCGATATG-TGATTTCG
1 TATAAGACCATATCAGGGATATGGCCTCGATATGAT-ATTTCA
* * * *
26038487 TATAAGACCATGTCAGGGACATGACGTCGATATGATATTTCA
1 TATAAGACCATATCAGGGATATGGCCTCGATATGATATTTCA
* *
26038529 TGTAAGACCATATCGGGGATATGGC
1 TATAAGACCATATCAGGGATATGGC
26038554 ATTGAAACGA
Statistics
Matches: 54, Mismatches: 12, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
42 53 0.98
43 1 0.02
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.28
Consensus pattern (42 bp):
TATAAGACCATATCAGGGATATGGCCTCGATATGATATTTCA
Found at i:26041277 original size:49 final size:49
Alignment explanation
Indices: 26041219--26041398 Score: 143
Period size: 49 Copynumber: 3.7 Consensus size: 49
26041209 TGTTGTGTGT
*
26041219 CAGTGTAAGACCTGCCTGGGACATGGCATCGACACCGATAGATGAGAGC
1 CAGTGTAAGACCTGCCTGGGACATGGCATCGACACCGATAGATGAAAGC
* * * * *
26041268 CAGTGTAAGAGCTGTCC-AGAACATGGCATTGAC-CTCGATATATGAAAGC
1 CAGTGTAAGACCTG-CCTGGGACATGGCATCGACAC-CGATAGATGAAAGC
* * * * **** **
26041317 CAGTGTAAGACCTGTCTGAGACACGACATCGACTTTAAT-G-TGCTAGC
1 CAGTGTAAGACCTGCCTGGGACATGGCATCGACACCGATAGATGAAAGC
**
26041364 CAGTGTAAGACCATGTTTGGGACATGGCATCGACA
1 CAGTGTAAGACC-TGCCTGGGACATGGCATCGACA
26041399 TCTTATCCCA
Statistics
Matches: 101, Mismatches: 25, Indels: 11
0.74 0.18 0.08
Matches are distributed among these distances:
47 17 0.17
48 19 0.19
49 63 0.62
50 2 0.02
ACGTcount: A:0.29, C:0.22, G:0.27, T:0.22
Consensus pattern (49 bp):
CAGTGTAAGACCTGCCTGGGACATGGCATCGACACCGATAGATGAAAGC
Found at i:26045887 original size:26 final size:25
Alignment explanation
Indices: 26045856--26045907 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 25
26045846 TTTAAAATAT
26045856 GGTTGACA-AAAAAAATAAAAATAAAA
1 GGTTGACACAAAAAAA-AAAAA-AAAA
*
26045882 GGTTGACACAAAATAAAAAAAAAAA
1 GGTTGACACAAAAAAAAAAAAAAAA
26045907 G
1 G
26045908 TTATGTAAGA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 5 0.21
26 13 0.54
27 6 0.25
ACGTcount: A:0.67, C:0.06, G:0.13, T:0.13
Consensus pattern (25 bp):
GGTTGACACAAAAAAAAAAAAAAAA
Found at i:26064005 original size:116 final size:117
Alignment explanation
Indices: 26063861--26064087 Score: 293
Period size: 117 Copynumber: 1.9 Consensus size: 117
26063851 GAGTTTTTAA
26063861 AACCCACACGGCCCGGACACACGAGCGTG-CCCTTGGCCATAT-GAAATTTCAGACTTAGTTTTA
1 AACCCACACGGCCCGGACACACGAGCGTGTCCC-TGGCCATATGGAAATTTCAGACTTAGTTTTA
* *
26063924 AA-CATTTTAAAGAAATTGACATTGAGTTACACGGCCTGG-CGACACGGCCGTGT
65 AATCATTTTAAA-AAATCGACAGTGAGTTACACGGCCTGGAC-ACACGGCCGTGT
* * * * * *
26063977 AACCCACATGGCCTGGACACAC-AGGCGTGTCCCTGGCCGTGTGGAATTTTTAGACTTAGTTTTA
1 AACCCACACGGCCCGGACACACGA-GCGTGTCCCTGGCCATATGGAAATTTCAGACTTAGTTTTA
**
26064041 AATTTTTTTAAAAAATCGACAGTGAGTTACACGGCCTGGACACACGG
65 AATCATTTTAAAAAATCGACAGTGAGTTACACGGCCTGGACACACGG
26064088 GCTTGTCCTT
Statistics
Matches: 96, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
115 1 0.01
116 32 0.33
117 55 0.57
118 8 0.08
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.25
Consensus pattern (117 bp):
AACCCACACGGCCCGGACACACGAGCGTGTCCCTGGCCATATGGAAATTTCAGACTTAGTTTTAA
ATCATTTTAAAAAATCGACAGTGAGTTACACGGCCTGGACACACGGCCGTGT
Found at i:26070929 original size:6 final size:5
Alignment explanation
Indices: 26070905--26070969 Score: 51
Period size: 6 Copynumber: 11.8 Consensus size: 5
26070895 ATTGAGTCCA
*
26070905 TTTAT TTTAT TTTATT TTTAGT TTTAGT TTTAT TTCTATT TTTAGG TTTAT
1 TTTAT TTTAT TTTA-T TTTA-T TTTA-T TTTAT TT-TA-T TTTA-T TTTAT
26070956 TGTTAT TTT-T TTTA
1 T-TTAT TTTAT TTTA
26070970 GACTTCTTTT
Statistics
Matches: 51, Mismatches: 4, Indels: 10
0.78 0.06 0.15
Matches are distributed among these distances:
4 4 0.08
5 15 0.29
6 29 0.57
7 3 0.06
ACGTcount: A:0.17, C:0.02, G:0.08, T:0.74
Consensus pattern (5 bp):
TTTAT
Found at i:26070937 original size:18 final size:17
Alignment explanation
Indices: 26070905--26070964 Score: 68
Period size: 18 Copynumber: 3.5 Consensus size: 17
26070895 ATTGAGTCCA
26070905 TTTATTTTA-TTTTATT
1 TTTATTTTAGTTTTATT
26070921 TTTAGTTTTAGTTTTATT
1 TTTA-TTTTAGTTTTATT
* *
26070939 TCTATTTTTAGGTTTATT
1 TTTA-TTTTAGTTTTATT
*
26070957 GTTATTTT
1 TTTATTTT
26070965 TTTTAGACTT
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
16 4 0.11
17 9 0.24
18 24 0.65
ACGTcount: A:0.17, C:0.02, G:0.08, T:0.73
Consensus pattern (17 bp):
TTTATTTTAGTTTTATT
Found at i:26070949 original size:24 final size:22
Alignment explanation
Indices: 26070905--26070968 Score: 85
Period size: 24 Copynumber: 2.8 Consensus size: 22
26070895 ATTGAGTCCA
*
26070905 TTTATTTTATTTTATTTTTAGT
1 TTTATTTTATTTTATTTTTAGG
26070927 TTTAGTTTTATTTCTATTTTTAGG
1 TTTA-TTTTATTT-TATTTTTAGG
26070951 TTTATTGTTATTTT-TTTT
1 TTTATT-TTATTTTATTTT
26070969 AGACTTCTTT
Statistics
Matches: 38, Mismatches: 1, Indels: 6
0.84 0.02 0.13
Matches are distributed among these distances:
22 8 0.21
23 11 0.29
24 19 0.50
ACGTcount: A:0.16, C:0.02, G:0.08, T:0.75
Consensus pattern (22 bp):
TTTATTTTATTTTATTTTTAGG
Found at i:26070956 original size:12 final size:12
Alignment explanation
Indices: 26070905--26070968 Score: 57
Period size: 12 Copynumber: 5.7 Consensus size: 12
26070895 ATTGAGTCCA
26070905 TTTA-TTTTA-T
1 TTTATTTTTAGT
26070915 TTTATTTTTAGT
1 TTTATTTTTAGT
*
26070927 TTTAGTTTTA-T
1 TTTATTTTTAGT
*
26070938 TTCTATTTTTAGG
1 TT-TATTTTTAGT
*
26070951 TTTATTGTTA-T
1 TTTATTTTTAGT
26070962 TTT-TTTT
1 TTTATTTT
26070969 AGACTTCTTT
Statistics
Matches: 44, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
10 7 0.16
11 11 0.25
12 24 0.55
13 2 0.05
ACGTcount: A:0.16, C:0.02, G:0.08, T:0.75
Consensus pattern (12 bp):
TTTATTTTTAGT
Found at i:26074895 original size:17 final size:18
Alignment explanation
Indices: 26074870--26074903 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
26074860 AATATAGTAA
*
26074870 AATATAAATTATAAAAAT
1 AATATAAATAATAAAAAT
26074888 AATA-AAATAATAAAAA
1 AATATAAATAATAAAAA
26074904 AAAAAACAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (18 bp):
AATATAAATAATAAAAAT
Found at i:26075262 original size:151 final size:151
Alignment explanation
Indices: 26074956--26075272 Score: 351
Period size: 151 Copynumber: 2.1 Consensus size: 151
26074946 AGACTTTAGC
* *
26074956 ACAAACAAATTTTTTTACAATCAAAAATATAATCTTAAACATTAAATTTAAGTATTAAAAATAAA
1 ACAAACAAATTTTTTTACAATCAAAAATATAATATTAAACATTAAATTAAAGTATTAAAAATAAA
*
26075021 AAAATAAACATAAAATATAAAAATTATTATTACAAACTAAAAAAAAAAAACTTAAAACTATCATA
66 AAAATAAACATAAAATATAAAAATTATTATTACAAACTAAAAAAAAAAAACTTAAAACTATCACA
* * *
26075086 AACTATCTCTAAAACTCCGAC
131 AACTATCCCTAAAACTCCAAA
* *
26075107 ACAAACAAATTTTTTATA-AA-CAAAAATATAATATTAAATATTTAATCTAAAG-ATTAAAAATA
1 ACAAACAAATTTTTT-TACAATCAAAAATATAATATTAAACATTAAAT-TAAAGTATTAAAAATA
* * * * * *
26075169 AATTAGAATATAAATATATAATATACAAATTATTATTAC-AAC-AATAAAAACACA-TTAAAACT
64 AA--A-AA-ATAAACATAAAATATAAAAATTATTATTACAAACTAAAAAAAAAAAACTTAAAACT
* ** * * *
26075231 TTCACAATTTCTCCCTAAAATTCTAAA
125 ATCACAAACTATCCCTAAAACTCCAAA
26075258 ACAAAC-AATTTTTTT
1 ACAAACAAATTTTTTT
26075273 CCTTCCAAAA
Statistics
Matches: 140, Mismatches: 20, Indels: 14
0.80 0.11 0.08
Matches are distributed among these distances:
149 1 0.01
150 43 0.31
151 52 0.37
152 12 0.09
153 5 0.04
154 27 0.19
ACGTcount: A:0.55, C:0.12, G:0.01, T:0.32
Consensus pattern (151 bp):
ACAAACAAATTTTTTTACAATCAAAAATATAATATTAAACATTAAATTAAAGTATTAAAAATAAA
AAAATAAACATAAAATATAAAAATTATTATTACAAACTAAAAAAAAAAAACTTAAAACTATCACA
AACTATCCCTAAAACTCCAAA
Found at i:26079229 original size:355 final size:355
Alignment explanation
Indices: 26078181--26079244 Score: 2067
Period size: 354 Copynumber: 3.0 Consensus size: 355
26078171 TTTTAATAAA
*
26078181 TATCTCCCCCATGCACCAACCTACTAACAGTCCCAATCCAAATGCCTTAATGCATCTGCATAATT
1 TATCTCCCCCATGCACCAACCCACTAACAGTCCCAATCCAAATGCCTTAATGCATCTGCATAATT
26078246 CCTTTATTTTCATTTTTAAAGGGACAAAAATACATATAGCCTTATGATTCGGAACAAAATCTTTG
66 CCTTTATTTTCATTTTTAAAGGGACAAAAATACATATAGCCTTATGATTCGGAACAAAATCTTTG
*
26078311 AAGGGTTACAAAGTCGAGATGTGGATATCCACTAAGAACCAAACCAATAGCCGGCGTGGTTGACC
131 AAGGGTTACAAAGTCGAGATGTGGATATCCACTAAGAACCAAACCAATAGCGGGCGTGGTTGACC
26078376 AACAGCCATTTTACGAAGCACTCAGCTTTCAACCCGTTTTGGATAAGAACTTGGTGGATGTCAAG
196 AACAGCCATTTTACGAAGCACTCAGCTTTCAACCCGTTTTGGATAAGAACTTGGTGGATGTCAAG
26078441 ATCATACCAGTAAATGAACGAAACTCATAATTCTTTCATACTTCATTAATGCGAGAGTACATGTA
261 ATCATACCAGTAAATGAACGAAACTCATAATTCTTTCATACTTCATTAATGCGAGAGTACATGTA
*
26078506 TTTAATAGATGGAAGATAGAGGTTAGCACT
326 TTTAATAGATGGAAGAGAGAGGTTAGCACT
*
26078536 TATCTCCCCCATGCACCAACCCACTAATAGTCCCAATCCAAATGCCTTAATGCATCTGCATAATT
1 TATCTCCCCCATGCACCAACCCACTAACAGTCCCAATCCAAATGCCTTAATGCATCTGCATAATT
26078601 CCTTTATTTTCATTTTTAAAGGGACAAAAATACATATAG-CTTATGATTCGGAACAAAATCTTTG
66 CCTTTATTTTCATTTTTAAAGGGACAAAAATACATATAGCCTTATGATTCGGAACAAAATCTTTG
26078665 AAGGGTTACAAAGTCGAGATGTGGATATCCACTAAGAACCAAACCAATAGCGGGCGTGGTTGACC
131 AAGGGTTACAAAGTCGAGATGTGGATATCCACTAAGAACCAAACCAATAGCGGGCGTGGTTGACC
26078730 AACAGCCATTTTACGAAGCACTCAGCTTTCAACCCGTTTTGGATAAGAACTTGGTGGATGTCAAG
196 AACAGCCATTTTACGAAGCACTCAGCTTTCAACCCGTTTTGGATAAGAACTTGGTGGATGTCAAG
26078795 ATCATACCAGTAAATGAACGAAACTCATAATTCTTTCATACTTCATTAATGCGAGAGTACATGTA
261 ATCATACCAGTAAATGAACGAAACTCATAATTCTTTCATACTTCATTAATGCGAGAGTACATGTA
26078860 TTTAATAGATGGAAGAGAGAGGTTAGCACT
326 TTTAATAGATGGAAGAGAGAGGTTAGCACT
26078890 TATCTCCCCCATGCACCAACCCACTAACAGTCCCAATCCAAATGCCTTAATGCATCTGCATAATT
1 TATCTCCCCCATGCACCAACCCACTAACAGTCCCAATCCAAATGCCTTAATGCATCTGCATAATT
26078955 CCTTTATTTTCATTTTTAAAGGGACAAAAATACATATAGCCTTATGATTCGGAACAAAATCTTTG
66 CCTTTATTTTCATTTTTAAAGGGACAAAAATACATATAGCCTTATGATTCGGAACAAAATCTTTG
*
26079020 AAGGGTTACAAAGTCGAGATGTGGATATCCACCAAGAACCAAACCAATAGCGGGCGTGGTTGACC
131 AAGGGTTACAAAGTCGAGATGTGGATATCCACTAAGAACCAAACCAATAGCGGGCGTGGTTGACC
*
26079085 AATAGCCATTTTACGAAGCACTCAGCTTTCAACCCGTTTTGGATAAGAACTTGGTGGATGTCAAG
196 AACAGCCATTTTACGAAGCACTCAGCTTTCAACCCGTTTTGGATAAGAACTTGGTGGATGTCAAG
26079150 ATCATACCAGTAAATGAACGAAACTCATAATTCTTTCATACTTCATTAATGCGAGAGTACATGTA
261 ATCATACCAGTAAATGAACGAAACTCATAATTCTTTCATACTTCATTAATGCGAGAGTACATGTA
26079215 TTTAATAGATGGAAGAGAGAGGTTAGCACT
326 TTTAATAGATGGAAGAGAGAGGTTAGCACT
26079245 AACTAACTTG
Statistics
Matches: 701, Mismatches: 7, Indels: 2
0.99 0.01 0.00
Matches are distributed among these distances:
354 351 0.50
355 350 0.50
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28
Consensus pattern (355 bp):
TATCTCCCCCATGCACCAACCCACTAACAGTCCCAATCCAAATGCCTTAATGCATCTGCATAATT
CCTTTATTTTCATTTTTAAAGGGACAAAAATACATATAGCCTTATGATTCGGAACAAAATCTTTG
AAGGGTTACAAAGTCGAGATGTGGATATCCACTAAGAACCAAACCAATAGCGGGCGTGGTTGACC
AACAGCCATTTTACGAAGCACTCAGCTTTCAACCCGTTTTGGATAAGAACTTGGTGGATGTCAAG
ATCATACCAGTAAATGAACGAAACTCATAATTCTTTCATACTTCATTAATGCGAGAGTACATGTA
TTTAATAGATGGAAGAGAGAGGTTAGCACT
Found at i:26086992 original size:14 final size:14
Alignment explanation
Indices: 26086973--26087001 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
26086963 CTCTTGAGAT
26086973 TAATCTTTATCGAG
1 TAATCTTTATCGAG
26086987 TAATCTTTATCGAG
1 TAATCTTTATCGAG
26087001 T
1 T
26087002 CAAAGGTGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.28, C:0.14, G:0.14, T:0.45
Consensus pattern (14 bp):
TAATCTTTATCGAG
Found at i:26091869 original size:9 final size:9
Alignment explanation
Indices: 26091852--26091918 Score: 59
Period size: 9 Copynumber: 7.7 Consensus size: 9
26091842 CATCTGGCAA
26091852 AAAAATTAT
1 AAAAATTAT
*
26091861 AAAAGTTAT
1 AAAAATTAT
*
26091870 AAAAATCAAT
1 AAAAAT-TAT
*
26091880 AAAAGTTAT
1 AAAAATTAT
26091889 AAAAATTAT
1 AAAAATTAT
**
26091898 -TCAATTA-
1 AAAAATTAT
26091905 AAAAATTA-
1 AAAAATTAT
26091913 AAAAAT
1 AAAAAT
26091919 AGAAAAAAAT
Statistics
Matches: 46, Mismatches: 10, Indels: 5
0.75 0.16 0.08
Matches are distributed among these distances:
8 16 0.35
9 23 0.50
10 7 0.15
ACGTcount: A:0.64, C:0.03, G:0.03, T:0.30
Consensus pattern (9 bp):
AAAAATTAT
Found at i:26092244 original size:9 final size:9
Alignment explanation
Indices: 26092214--26092286 Score: 58
Period size: 9 Copynumber: 7.7 Consensus size: 9
26092204 TTTCCATATA
26092214 TTTTATAAT
1 TTTTATAAT
*
26092223 TTTTTTACGAT
1 TTTTATA--AT
26092234 TTTTATAAT
1 TTTTATAAT
26092243 TTTTA-ATAT
1 TTTTATA-AT
*
26092252 TTTTATTAAAA
1 TTTTA-T-AAT
*
26092263 TTTAATAAT
1 TTTTATAAT
*
26092272 TTGTATAAT
1 TTTTATAAT
26092281 TTTTAT
1 TTTTAT
26092287 TTTTATCATT
Statistics
Matches: 50, Mismatches: 8, Indels: 12
0.71 0.11 0.17
Matches are distributed among these distances:
8 1 0.02
9 34 0.68
10 1 0.02
11 13 0.26
12 1 0.02
ACGTcount: A:0.33, C:0.01, G:0.03, T:0.63
Consensus pattern (9 bp):
TTTTATAAT
Found at i:26092255 original size:19 final size:18
Alignment explanation
Indices: 26092209--26092285 Score: 64
Period size: 19 Copynumber: 4.0 Consensus size: 18
26092199 CTATATTTCC
26092209 ATATATTTTATAATTTTTTTA
1 ATAT-TTTTATAA--TTTTTA
**
26092230 CGATTTTTATAATTTTTA
1 ATATTTTTATAATTTTTA
**
26092248 ATATTTTTATTAAAATTTA
1 ATATTTTTA-TAATTTTTA
*
26092267 ATAATTTGTATAATTTTTA
1 AT-ATTTTTATAATTTTTA
26092286 TTTTTATCAT
Statistics
Matches: 45, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
18 13 0.29
19 16 0.36
20 14 0.31
21 2 0.04
ACGTcount: A:0.35, C:0.01, G:0.03, T:0.61
Consensus pattern (18 bp):
ATATTTTTATAATTTTTA
Found at i:26101768 original size:92 final size:94
Alignment explanation
Indices: 26101663--26101841 Score: 283
Period size: 92 Copynumber: 1.9 Consensus size: 94
26101653 TTTTATAGCT
* *
26101663 ATTTTGTTAGTAATTTATGATTAGATTATAAATTGTTTGTGTTTAGTTT-A-GTATT-TTGTGAG
1 ATTTTGTCAGTAATTTATGATTAGATTATAAATTGTTTGGGTTTAGTTTAATGT-TTATTGTGAG
26101725 TTTTTATGAATGTAAATTTTTTTTAAAGTC
65 TTTTTATGAATGTAAATTTTTTTTAAAGTC
* * *
26101755 ATTTTGTCAGTAATTTATGGTTAGATTATAAATTGTTTGGGTTTTGTTTAATGTTTATTGTGATT
1 ATTTTGTCAGTAATTTATGATTAGATTATAAATTGTTTGGGTTTAGTTTAATGTTTATTGTGAGT
26101820 TTTTATGAATGTAAATTTTTTT
66 TTTTATGAATGTAAATTTTTTT
26101842 ATTTTTTTAA
Statistics
Matches: 79, Mismatches: 5, Indels: 4
0.90 0.06 0.05
Matches are distributed among these distances:
92 45 0.57
93 3 0.04
94 31 0.39
ACGTcount: A:0.26, C:0.01, G:0.17, T:0.56
Consensus pattern (94 bp):
ATTTTGTCAGTAATTTATGATTAGATTATAAATTGTTTGGGTTTAGTTTAATGTTTATTGTGAGT
TTTTATGAATGTAAATTTTTTTTAAAGTC
Found at i:26101870 original size:111 final size:109
Alignment explanation
Indices: 26101745--26102166 Score: 465
Period size: 111 Copynumber: 3.9 Consensus size: 109
26101735 TGTAAATTTT
* * * * *
26101745 TTTTAAAGTCATTTTGTCAGTAATTTATGGTTAGATTATAAATTGTTTGGGTTTTGTTTAATGTT
1 TTTTAAAGTTATTTTGTTAGTAATTTATGATTAGATTATAAATTGTTTGTGTTTAGTTTAATGTT
*
26101810 TATTGTGATTTTTTATGAATGTAAATTTTTTTATTTTTTTAAATTA
66 TATTGTGATTTGTTATGAATGT--ATTTTTTTATTTTTTTAAATTA
* * * *
26101856 TTTGAAAGTTATTTTGTTAGTAATTTATGATTAGATTATAAATTGTTTCTGTTT-TTTTAGTGTT
1 TTTTAAAGTTATTTTGTTAGTAATTTATGATTAGATTATAAATTGTTTGTGTTTAGTTTAATGTT
*
26101920 T-TTGTGATTTTTTATGAATGTA-------ATTTTTTT-AATTA
66 TATTGTGATTTGTTATGAATGTATTTTTTTATTTTTTTAAATTA
* * * *
26101955 TTTTAAAGTTGTTTT-TTAGTAATTTATTATTAGGTTATAAATTGTTTGTGTTTAGTTTAGTGTT
1 TTTTAAAGTTATTTTGTTAGTAATTTATGATTAGATTATAAATTGTTTGTGTTTAGTTTAATGTT
* * * *
26102019 TATTGTGACTTGTTATAAAT-TTTTTTTTTGTGTTTTTTAAATTA
66 TATTGTGATTTGTTATGAATGTATTTTTTTAT-TTTTTTAAATTA
* * *
26102063 TTTTAAAGTTATTTTGTTAGTAATTTATTATTAGATTATAAATTATTAATTTGTTTAGTTTAATG
1 TTTTAAAGTTATTTTGTTAGTAATTTATGATTAGATTATAAATTGTT--TGTGTTTAGTTTAATG
* * *
26102128 TGTATCGTGATTTGTTAT-AATGTAATTTTATTTGTTTTT
64 TTTATTGTGATTTGTTATGAATGT-ATTTT-TTTATTTTT
26102167 GATTTATTTG
Statistics
Matches: 266, Mismatches: 28, Indels: 33
0.81 0.09 0.10
Matches are distributed among these distances:
98 35 0.13
99 29 0.11
100 23 0.09
106 1 0.00
107 7 0.03
108 19 0.07
109 49 0.18
110 12 0.05
111 78 0.29
112 8 0.03
113 5 0.02
ACGTcount: A:0.26, C:0.01, G:0.14, T:0.59
Consensus pattern (109 bp):
TTTTAAAGTTATTTTGTTAGTAATTTATGATTAGATTATAAATTGTTTGTGTTTAGTTTAATGTT
TATTGTGATTTGTTATGAATGTATTTTTTTATTTTTTTAAATTA
Found at i:26101879 original size:203 final size:205
Alignment explanation
Indices: 26101580--26102124 Score: 682
Period size: 203 Copynumber: 2.7 Consensus size: 205
26101570 GTTATTAATT
*
26101580 ATTATAAATTGTTTGTGTTTAGTTTAGTG-TT-TTGTGATTTTTTTATGAATGTAAA-TTTTTTG
1 ATTATAAATTGTTTGTGTTTAGTTTAGTGTTTATTGTGA-TTTTTTATGAATGTAAATTTTTTTT
* * *
26101642 TTTTTT-AATTATTTTATAGCTATTTTGTTAGTAATTTATGATTAGATTATAAATTGTTTGTGTT
65 TTTTTTAAATTATTTTAAAGTTATTTTGTTAGTAATTTATGATTAGATTATAAATTGTTTCTGTT
26101706 TAGTTTAGT-ATTTTGTGAGTTTTTATGAATGTAA-ATT-TT-TTTTAAAGTCATTTTGTCAGTA
130 TAGTTTAGTGATTTTGTGAGTTTTTATGAATGTAATATTATTATTTTAAAGTCATTTT-TCAGTA
*
26101767 ATTTATGGTTAG
194 ATTTATGATTAG
* * *
26101779 ATTATAAATTGTTTGGGTTTTGTTTAATGTTTATTGTGATTTTTTATGAATGTAAATTTTTTTAT
1 ATTATAAATTGTTTGTGTTTAGTTTAGTGTTTATTGTGATTTTTTATGAATGTAAATTTTTTT-T
*
26101844 TTTTTTAAATTATTTGAAAGTTATTTTGTTAGTAATTTATGATTAGATTATAAATTGTTTCTGTT
65 TTTTTTAAATTATTTTAAAGTTATTTTGTTAGTAATTTATGATTAGATTATAAATTGTTTCTGTT
* * * * ** *
26101909 T-TTTTAGTGTTTTTGTGATTTTTTATGAATGTAATTTTTTTAATTATTTTAAAGTTGTTTTTTA
130 TAGTTTAGTGATTTTGTGAGTTTTTATGAATGTAA---TATT-ATTATTTTAAAGTCATTTTTCA
*
26101973 GTAATTTATTATTAG
191 GTAATTTATGATTAG
* * * * *
26101988 GTTATAAATTGTTTGTGTTTAGTTTAGTGTTTATTGTGACTTGTTATAAAT-T--TTTTTTTTGT
1 ATTATAAATTGTTTGTGTTTAGTTTAGTGTTTATTGTGATTTTTTATGAATGTAAATTTTTTT-T
* * *
26102050 GTTTTTTAAATTATTTTAAAGTTATTTTGTTAGTAATTTATTATTAGATTATAAATTATTAATTT
65 -TTTTTTAAATTATTTTAAAGTTATTTTGTTAGTAATTTATGATTAGATTATAAATTGTT--TCT
26102115 GTTTAGTTTA
127 GTTTAGTTTA
26102125 ATGTGTATCG
Statistics
Matches: 298, Mismatches: 31, Indels: 23
0.85 0.09 0.07
Matches are distributed among these distances:
199 26 0.09
200 19 0.06
201 12 0.04
202 12 0.04
203 78 0.26
206 8 0.03
207 58 0.19
208 1 0.00
209 67 0.22
210 17 0.06
ACGTcount: A:0.26, C:0.01, G:0.14, T:0.59
Consensus pattern (205 bp):
ATTATAAATTGTTTGTGTTTAGTTTAGTGTTTATTGTGATTTTTTATGAATGTAAATTTTTTTTT
TTTTTAAATTATTTTAAAGTTATTTTGTTAGTAATTTATGATTAGATTATAAATTGTTTCTGTTT
AGTTTAGTGATTTTGTGAGTTTTTATGAATGTAATATTATTATTTTAAAGTCATTTTTCAGTAAT
TTATGATTAG
Found at i:26103286 original size:13 final size:13
Alignment explanation
Indices: 26103268--26103317 Score: 50
Period size: 13 Copynumber: 3.7 Consensus size: 13
26103258 TATGAATTAA
26103268 ATATTATTATATT
1 ATATTATTATATT
26103281 ATATTATTATCA-T
1 ATATTATTAT-ATT
26103294 A-ATGTATTATTATT
1 ATAT-TATTA-TATT
26103308 GATATTATTA
1 -ATATTATTA
26103318 ACTAATATAT
Statistics
Matches: 31, Mismatches: 0, Indels: 10
0.76 0.00 0.24
Matches are distributed among these distances:
12 2 0.06
13 18 0.58
14 3 0.10
15 6 0.19
16 2 0.06
ACGTcount: A:0.38, C:0.02, G:0.04, T:0.56
Consensus pattern (13 bp):
ATATTATTATATT
Found at i:26103290 original size:16 final size:16
Alignment explanation
Indices: 26103269--26103315 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 16
26103259 ATGAATTAAA
26103269 TATTATTATATTATAT
1 TATTATTATATTATAT
* * *
26103285 TATTATCATAATGTAT
1 TATTATTATATTATAT
26103301 TATTATTGATATTAT
1 TATTATT-ATATTAT
26103316 TAACTAATAT
Statistics
Matches: 24, Mismatches: 6, Indels: 1
0.77 0.19 0.03
Matches are distributed among these distances:
16 19 0.79
17 5 0.21
ACGTcount: A:0.36, C:0.02, G:0.04, T:0.57
Consensus pattern (16 bp):
TATTATTATATTATAT
Found at i:26104287 original size:21 final size:21
Alignment explanation
Indices: 26104261--26104321 Score: 79
Period size: 21 Copynumber: 2.9 Consensus size: 21
26104251 GGCTTTGCGA
26104261 TCAGGCACTATATGTGTCGTAT
1 TCAGGCACTATATGTGTCGT-T
* *
26104283 T-AGGCACCACATGTGTCGTT
1 TCAGGCACTATATGTGTCGTT
*
26104303 TCAGGCACTTTATGTGTCG
1 TCAGGCACTATATGTGTCG
26104322 CATATTGCTT
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
20 2 0.06
21 30 0.91
22 1 0.03
ACGTcount: A:0.20, C:0.21, G:0.25, T:0.34
Consensus pattern (21 bp):
TCAGGCACTATATGTGTCGTT
Found at i:26105046 original size:15 final size:15
Alignment explanation
Indices: 26105026--26105055 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
26105016 AATGAAGTTA
26105026 TTAGTCAATTTGAAT
1 TTAGTCAATTTGAAT
26105041 TTAGTCAATTTGAAT
1 TTAGTCAATTTGAAT
26105056 GATATCATGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.07, G:0.13, T:0.47
Consensus pattern (15 bp):
TTAGTCAATTTGAAT
Found at i:26105495 original size:13 final size:13
Alignment explanation
Indices: 26105477--26105502 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
26105467 GGACCCTTTA
26105477 GAAATTAATTATC
1 GAAATTAATTATC
26105490 GAAATTAATTATC
1 GAAATTAATTATC
26105503 TCAGTTTAGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.08, G:0.08, T:0.38
Consensus pattern (13 bp):
GAAATTAATTATC
Found at i:26111186 original size:108 final size:110
Alignment explanation
Indices: 26111049--26111248 Score: 262
Period size: 108 Copynumber: 1.8 Consensus size: 110
26111039 TTTATAATAG
* * * * * * *
26111049 TTACTAATAAAATAATTTTTAAATCAATTAAAAAATATTAAAACA-TTACATTTATAACCTAA-C
1 TTACTAACAAAATAACTTTAAAATAAATTAAAAAATAATAAAA-ATTTACATTCATAACCTAATA
* *
26111112 AAATTACAATAAACCCTAAA-CAAACAATTAACCTAATCACGAAAC
65 AAATCACAATAAACACTAAACCAAACAATTAACCTAATCACGAAAC
**
26111157 TTACTAACAAAATAACTTTAAAATAAATTAAAAGTTAATAAAAATTTACATTCATAACCTAATAA
1 TTACTAACAAAATAACTTTAAAATAAATTAAAAAATAATAAAAATTTACATTCATAACCTAATAA
*
26111222 AATCACAATAAACATTAAACCAAACAA
66 AATCACAATAAACACTAAACCAAACAA
26111249 ATAATTTATA
Statistics
Matches: 77, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
107 1 0.01
108 52 0.68
109 17 0.22
110 7 0.09
ACGTcount: A:0.56, C:0.15, G:0.01, T:0.28
Consensus pattern (110 bp):
TTACTAACAAAATAACTTTAAAATAAATTAAAAAATAATAAAAATTTACATTCATAACCTAATAA
AATCACAATAAACACTAAACCAAACAATTAACCTAATCACGAAAC
Found at i:26115910 original size:14 final size:14
Alignment explanation
Indices: 26115891--26115917 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
26115881 GTTGCGTTCG
26115891 TAGTTAAATTAGAT
1 TAGTTAAATTAGAT
26115905 TAGTTAAATTAGA
1 TAGTTAAATTAGA
26115918 CTAAAAATAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.15, T:0.41
Consensus pattern (14 bp):
TAGTTAAATTAGAT
Found at i:26122309 original size:15 final size:15
Alignment explanation
Indices: 26122285--26122363 Score: 65
Period size: 15 Copynumber: 5.1 Consensus size: 15
26122275 AGCCACCCAT
26122285 TTTATT-TTATTTTA
1 TTTATTATTATTTTA
26122299 TTTATTATTATTTT-
1 TTTATTATTATTTTA
26122313 TTATATTATTTATTTTTA
1 TT-TATTA-TTA-TTTTA
* *
26122331 TTTTACTAATA-TTTA
1 -TTTATTATTATTTTA
26122346 TTTATTTATTATTCTTA
1 TTTA-TTATTATT-TTA
26122363 T
1 T
26122364 ATTTAGATTT
Statistics
Matches: 52, Mismatches: 4, Indels: 15
0.73 0.06 0.21
Matches are distributed among these distances:
14 12 0.23
15 20 0.38
16 4 0.08
17 10 0.19
18 4 0.08
19 2 0.04
ACGTcount: A:0.25, C:0.03, G:0.00, T:0.72
Consensus pattern (15 bp):
TTTATTATTATTTTA
Found at i:26122321 original size:22 final size:22
Alignment explanation
Indices: 26122289--26122366 Score: 77
Period size: 22 Copynumber: 3.4 Consensus size: 22
26122279 ACCCATTTTA
*
26122289 TTTTATTTTATTTATTATTATT
1 TTTTATATTATTTATTATTATT
*
26122311 TTTTATATTATTTATTTTTATT
1 TTTTATATTATTTATTATTATT
*
26122333 TTACTAATATTTATTTATTTATTA-T
1 TT--TTATA-TTATTTA-TTATTATT
*
26122358 TCTTATATT
1 TTTTATATT
26122367 TAGATTTTAA
Statistics
Matches: 46, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
22 24 0.52
23 4 0.09
24 4 0.09
25 9 0.20
26 5 0.11
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.72
Consensus pattern (22 bp):
TTTTATATTATTTATTATTATT
Found at i:26122356 original size:36 final size:36
Alignment explanation
Indices: 26122285--26122358 Score: 89
Period size: 37 Copynumber: 2.1 Consensus size: 36
26122275 AGCCACCCAT
* * *
26122285 TTTATTTTATTTTATTTATTATTATTTTTTATATTA
1 TTTATTTTATTTTACTAATTATTATTTATTATATTA
26122321 TTTATTTTTATTTTACTAA-TATTTATTTATT-TATTA
1 TTTA-TTTTATTTTACTAATTA-TTATTTATTATATTA
26122357 TT
1 TT
26122359 CTTATATTTA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
36 13 0.39
37 20 0.61
ACGTcount: A:0.26, C:0.01, G:0.00, T:0.73
Consensus pattern (36 bp):
TTTATTTTATTTTACTAATTATTATTTATTATATTA
Found at i:26122606 original size:22 final size:21
Alignment explanation
Indices: 26122569--26122644 Score: 86
Period size: 22 Copynumber: 3.6 Consensus size: 21
26122559 GCCTCCCATT
26122569 TTATTTTAT-TTATTTATTT-
1 TTATTTTATATTATTTATTTA
26122588 TTATTTGTTATATTATTTATTT-
1 TTA-TT-TTATATTATTTATTTA
*
26122610 TTATTTTACTAATATTTATTTA
1 TTATTTTA-TATTATTTATTTA
26122632 TTATTCTTATATT
1 TTATT-TTATATT
26122645 TAGATTTTAA
Statistics
Matches: 49, Mismatches: 2, Indels: 9
0.82 0.03 0.15
Matches are distributed among these distances:
19 3 0.06
20 5 0.10
21 17 0.35
22 21 0.43
23 3 0.06
ACGTcount: A:0.25, C:0.03, G:0.01, T:0.71
Consensus pattern (21 bp):
TTATTTTATATTATTTATTTA
Found at i:26122653 original size:41 final size:40
Alignment explanation
Indices: 26122566--26122653 Score: 90
Period size: 43 Copynumber: 2.1 Consensus size: 40
26122556 CAAGCCTCCC
* * **
26122566 ATTTTATTTTATTTATTTATTTTTATTTGTTATATTATTT
1 ATTTTATTTTATATATTTATTTTTATTTCTTATATTATAG
26122606 ATTTTTATTTTACTAATATTTATTTATTA-TTCTTATATT-TAG
1 A-TTTTATTTTA-T-ATATTTATTT-TTATTTCTTATATTATAG
26122648 ATTTTA
1 ATTTTA
26122654 AATTTCTTTT
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
40 1 0.03
41 15 0.38
42 3 0.08
43 18 0.45
44 3 0.08
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.69
Consensus pattern (40 bp):
ATTTTATTTTATATATTTATTTTTATTTCTTATATTATAG
Found at i:26122756 original size:278 final size:281
Alignment explanation
Indices: 26122115--26122954 Score: 1514
Period size: 278 Copynumber: 3.0 Consensus size: 281
26122105 GGGAGAAGCG
* *
26122115 AAGGAAAACACACA---CCTGGCACATGGTTGTGTGAAAACTAGGTTAACTTTTAATTGCACACG
1 AAGGAAAACACACATGGCCTGACACATGGTCGTGTGAAAACTAGGTTAACTTTTAATTGCACACG
*
26122177 GGCTGAAAATGCTCCACACAGTCGGTTGTGTTACACGGCCATGTGGCCCAAACCCTAGATTTCCT
66 GGCTGAAAATGCTCCACACGGTCGGTTGTGTTACACGGCCATGTGGCCCAAACCCTAGATTTCCT
26122242 TTCTCAATTTGTCTTTTTCTTCTTCCCCAACCAAGCCACCCATTTTATTTTATTTTATTTATTAT
131 TTCTCAATTTGTCTTTTTCTTCTTCCCCAACCAAGCCACCCATTTTATTTTA-TTTATTTATTAT
*
26122307 TATTTTTTATATTATTTATTTTTATTTTACTAATATTTATTTATTTATTATTCTTATATTTAGAT
195 TATTTGTTATATTATTTATTTTTATTTTACTAATA-TTATTTATTTATTATTCTTATATTTAGAT
26122372 TTTAAATTTCTTTTAATTTTTTT
259 TTTAAATTTCTTTTAATTTTTTT
26122395 AAGGAAAACACACATGGCCTGACACATGGTCGTGTGAAAACTAGGTTAACTTTTAATTGCACACG
1 AAGGAAAACACACATGGCCTGACACATGGTCGTGTGAAAACTAGGTTAACTTTTAATTGCACACG
*
26122460 GGCTGAAAATGCTCCACACGGTCGGTTGTGTTACATGGCCATGTGGCCCAAACCCTAGATTTCCT
66 GGCTGAAAATGCTCCACACGGTCGGTTGTGTTACACGGCCATGTGGCCCAAACCCTAGATTTCCT
* *
26122525 TTCTCAATTTGTCTTTTTCTTCTTCCCCAACCAAGCCTCCCATTTTATTTTATTTATTTATTTTT
131 TTCTCAATTTGTCTTTTTCTTCTTCCCCAACCAAGCCACCCATTTTATTTTATTTATTTATTATT
26122590 ATTTGTTATATTATTTATTTTTATTTTACT-A-A-TATTTATTTATTATTCTTATATTTAGATTT
196 ATTTGTTATATTATTTATTTTTATTTTACTAATATTATTTATTTATTATTCTTATATTTAGATTT
26122652 TAAATTTCTTTTAATTTTTTT
261 TAAATTTCTTTTAATTTTTTT
*
26122673 AAGGAAAACACACATGGCCTGACACATGGTCGTGTGAAAACTAGGTTAACTTTTAATTCCACACG
1 AAGGAAAACACACATGGCCTGACACATGGTCGTGTGAAAACTAGGTTAACTTTTAATTGCACACG
26122738 GGCTGAAAATGCTCCACACGGTCGGTTGTGTTACACGGCCATGTGGCCCAAACCCTAGATTTCCT
66 GGCTGAAAATGCTCCACACGGTCGGTTGTGTTACACGGCCATGTGGCCCAAACCCTAGATTTCCT
26122803 TTCTCAATTTGTCTTTTTCTTCTTCCCCAACCAAGCCACCCATTTTATTTTATTTATTTATTATT
131 TTCTCAATTTGTCTTTTTCTTCTTCCCCAACCAAGCCACCCATTTTATTTTATTTATTTATTATT
*
26122868 ATTTGTTATATTATTTATTTTTATTTTACTAATATTTATTTATTTATTATTCTTATACCTT-GAT
196 ATTTGTTATATTATTTATTTTTATTTTACTAATA-TTATTTATTTATTATTCTTATA-TTTAGAT
26122932 TTTAAATTTCTTTTAATTTTTTT
259 TTTAAATTTCTTTTAATTTTTTT
26122955 TACTATTTCT
Statistics
Matches: 540, Mismatches: 12, Indels: 14
0.95 0.02 0.02
Matches are distributed among these distances:
278 272 0.50
279 1 0.00
280 16 0.03
281 1 0.00
282 88 0.16
283 162 0.30
ACGTcount: A:0.26, C:0.18, G:0.12, T:0.44
Consensus pattern (281 bp):
AAGGAAAACACACATGGCCTGACACATGGTCGTGTGAAAACTAGGTTAACTTTTAATTGCACACG
GGCTGAAAATGCTCCACACGGTCGGTTGTGTTACACGGCCATGTGGCCCAAACCCTAGATTTCCT
TTCTCAATTTGTCTTTTTCTTCTTCCCCAACCAAGCCACCCATTTTATTTTATTTATTTATTATT
ATTTGTTATATTATTTATTTTTATTTTACTAATATTATTTATTTATTATTCTTATATTTAGATTT
TAAATTTCTTTTAATTTTTTT
Found at i:26122884 original size:22 final size:21
Alignment explanation
Indices: 26122852--26122893 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 21
26122842 CCATTTTATT
26122852 TTATTTATTTATTATTATTTG
1 TTATTTATTTATTATTATTTG
*
26122873 TTATATTATTTATTTTTATTT
1 TTAT-TTATTTATTATTATTT
26122894 TACTAATATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.24, C:0.00, G:0.02, T:0.74
Consensus pattern (21 bp):
TTATTTATTTATTATTATTTG
Found at i:26122918 original size:15 final size:15
Alignment explanation
Indices: 26122851--26122918 Score: 57
Period size: 15 Copynumber: 4.1 Consensus size: 15
26122841 CCCATTTTAT
26122851 TTTATTTATTTATTA
1 TTTATTTATTTATTA
*
26122866 -TTATTTGTTATATTA
1 TTTATTTATT-TATTA
26122881 TTTATTTTTATTTTACTAATA
1 TTTA--TTTA-TTTA-T--TA
26122902 TTTATTTATTTATTA
1 TTTATTTATTTATTA
26122917 TT
1 TT
26122919 CTTATACCTT
Statistics
Matches: 43, Mismatches: 2, Indels: 16
0.70 0.03 0.26
Matches are distributed among these distances:
14 8 0.19
15 9 0.21
16 3 0.07
17 1 0.02
18 9 0.21
19 7 0.16
21 6 0.14
ACGTcount: A:0.26, C:0.01, G:0.01, T:0.71
Consensus pattern (15 bp):
TTTATTTATTTATTA
Found at i:26123054 original size:15 final size:15
Alignment explanation
Indices: 26123034--26123094 Score: 56
Period size: 15 Copynumber: 4.2 Consensus size: 15
26123024 GAGTTTATTG
26123034 TTATTATTTTTCGTT
1 TTATTATTTTTCGTT
26123049 TTATTA-TTTTCG-T
1 TTATTATTTTTCGTT
* *
26123062 TTATTTATTTATCTTT
1 TTA-TTATTTTTCGTT
* *
26123078 TTTTTAATTTT-GTT
1 TTATTATTTTTCGTT
26123092 TTA
1 TTA
26123095 GTTGCTTTAT
Statistics
Matches: 36, Mismatches: 7, Indels: 7
0.72 0.14 0.14
Matches are distributed among these distances:
13 4 0.11
14 13 0.36
15 16 0.44
16 3 0.08
ACGTcount: A:0.16, C:0.05, G:0.05, T:0.74
Consensus pattern (15 bp):
TTATTATTTTTCGTT
Found at i:26123066 original size:13 final size:14
Alignment explanation
Indices: 26123034--26123094 Score: 54
Period size: 14 Copynumber: 4.2 Consensus size: 14
26123024 GAGTTTATTG
26123034 TTATTATTTTTCGTT
1 TTATTA-TTTTCGTT
26123049 TTATTATTTTCG-T
1 TTATTATTTTCGTT
*
26123062 TTATTTATTTATCTTT
1 TTA-TTATTT-TCGTT
*
26123078 TTTTTAATTTT-GTT
1 TTATT-ATTTTCGTT
26123092 TTA
1 TTA
26123095 GTTGCTTTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 9
0.75 0.08 0.18
Matches are distributed among these distances:
13 4 0.11
14 16 0.42
15 11 0.29
16 7 0.18
ACGTcount: A:0.16, C:0.05, G:0.05, T:0.74
Consensus pattern (14 bp):
TTATTATTTTCGTT
Found at i:26123079 original size:29 final size:29
Alignment explanation
Indices: 26123037--26123092 Score: 69
Period size: 29 Copynumber: 1.9 Consensus size: 29
26123027 TTTATTGTTA
*
26123037 TTATTTTTCGTTTTATT-ATTTTCGTTTAT
1 TTATTTATCGTTTTATTAATTTT-GTTTAT
* *
26123066 TTATTTATCTTTTTTTTAATTTTGTTT
1 TTATTTATCGTTTTATTAATTTTGTTT
26123093 TAGTTGCTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
29 18 0.78
30 5 0.22
ACGTcount: A:0.14, C:0.05, G:0.05, T:0.75
Consensus pattern (29 bp):
TTATTTATCGTTTTATTAATTTTGTTTAT
Found at i:26125839 original size:14 final size:14
Alignment explanation
Indices: 26125820--26125849 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
26125810 GTTGCGTTCG
26125820 TAGTTAAATTAGAT
1 TAGTTAAATTAGAT
26125834 TAGTTAAATTAGAT
1 TAGTTAAATTAGAT
26125848 TA
1 TA
26125850 AAAACAATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.43, C:0.00, G:0.13, T:0.43
Consensus pattern (14 bp):
TAGTTAAATTAGAT
Found at i:26127080 original size:30 final size:30
Alignment explanation
Indices: 26127041--26127108 Score: 91
Period size: 30 Copynumber: 2.3 Consensus size: 30
26127031 CATGGACTGG
* *
26127041 CACATGGGCGTGTGGCCAACCCATGTGGCT
1 CACACGGGCGTGTGGCCAACCCATGTCGCT
* * *
26127071 CACACGGGCGTGTGGCCAGCTCGTGTCGCT
1 CACACGGGCGTGTGGCCAACCCATGTCGCT
26127101 CACACGGG
1 CACACGGG
26127109 TATGTGTCAA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.15, C:0.32, G:0.35, T:0.18
Consensus pattern (30 bp):
CACACGGGCGTGTGGCCAACCCATGTCGCT
Found at i:26133137 original size:46 final size:46
Alignment explanation
Indices: 26133065--26133193 Score: 213
Period size: 46 Copynumber: 2.8 Consensus size: 46
26133055 TGTAACCCGC
* * *
26133065 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
26133111 CCATGAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
26133157 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
26133194 TGCTCAACCA
Statistics
Matches: 77, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 77 1.00
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:26133212 original size:46 final size:45
Alignment explanation
Indices: 26133070--26133212 Score: 137
Period size: 46 Copynumber: 3.1 Consensus size: 45
26133060 CCCGCCCATA
* ** * *
26133070 AGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTC-GCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCC-T
*** *
26133115 GAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTC-GCATCCAT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCC-T
*
26133161 AAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-ACCATCCT
26133208 AGTGA
1 AGTGA
26133213 CATGTCACTT
Statistics
Matches: 86, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
46 80 0.93
47 1 0.01
48 5 0.06
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.21
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCCT
Found at i:26135590 original size:15 final size:15
Alignment explanation
Indices: 26135561--26135610 Score: 66
Period size: 15 Copynumber: 3.4 Consensus size: 15
26135551 CAAAGATAAC
*
26135561 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
26135575 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
26135590 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
26135605 AAGAAA
1 AAGAAA
26135611 CCCAAGATAC
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
14 8 0.26
15 23 0.74
ACGTcount: A:0.60, C:0.12, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:26135619 original size:15 final size:15
Alignment explanation
Indices: 26135572--26135619 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
26135562 AGAAAACCGA
26135572 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
26135586 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
26135602 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
26135617 ATA
1 ATA
26135620 CGATACTATG
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
15 26 0.96
16 1 0.04
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:26138682 original size:90 final size:90
Alignment explanation
Indices: 26138529--26138695 Score: 291
Period size: 90 Copynumber: 1.9 Consensus size: 90
26138519 GCCCATAAGT
* *
26138529 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAGTGAACTCGGACTCAACTCAAC
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAGTGAACTCGGACTCAACTCAAC
26138594 GAGTTCGGATGCCTAGTTACATCTC
66 GAGTTCGGATGCCTAGTTACATCTC
*
26138619 GAACTCGGACTCAACTCAACGAGTTCGGACATT-GCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCAT-AGTGAACTCGGACTCAACTCAA
26138683 CGAGTTCGGATGC
65 CGAGTTCGGATGC
26138696 TCAACCATCC
Statistics
Matches: 73, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
89 8 0.11
90 65 0.89
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (90 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAGTGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATCTC
Found at i:26138692 original size:45 final size:45
Alignment explanation
Indices: 26138521--26138692 Score: 208
Period size: 45 Copynumber: 3.8 Consensus size: 45
26138511 TGTAACCCGC
* * *
26138521 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATT-GCAT
*
26138567 CCAT-AGTGAACTCGGACTCAACTCAACGAGTTCGG--A-TGCCT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTGCAT
*** *
26138608 AGTTACATCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTGCAT
1 CCATA-A-GT-GAACTCGGACTCAACTCAACGAGTTCGGACATTGCAT
26138656 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
26138693 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 12, Indels: 15
0.80 0.09 0.11
Matches are distributed among these distances:
41 4 0.04
42 1 0.01
43 1 0.01
44 1 0.01
45 87 0.81
46 5 0.05
47 2 0.02
48 6 0.06
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTGCAT
Found at i:26145085 original size:14 final size:14
Alignment explanation
Indices: 26145066--26145099 Score: 68
Period size: 14 Copynumber: 2.4 Consensus size: 14
26145056 TGTTTCATCC
26145066 ACAATATAACGTGA
1 ACAATATAACGTGA
26145080 ACAATATAACGTGA
1 ACAATATAACGTGA
26145094 ACAATA
1 ACAATA
26145100 AAAAGGAAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.53, C:0.15, G:0.12, T:0.21
Consensus pattern (14 bp):
ACAATATAACGTGA
Found at i:26148301 original size:49 final size:48
Alignment explanation
Indices: 26148244--26148341 Score: 187
Period size: 49 Copynumber: 2.0 Consensus size: 48
26148234 ACTTTTTGGC
26148244 TTAACGTACAAGGATAAATTTATTCATTTTTTTAATTAAAGGGGTACAA
1 TTAACGTACAAGGATAAATTTATTCA-TTTTTTAATTAAAGGGGTACAA
26148293 TTAACGTACAAGGATAAATTTATTCATTTTTTAATTAAAGGGGTACAA
1 TTAACGTACAAGGATAAATTTATTCATTTTTTAATTAAAGGGGTACAA
26148341 T
1 T
26148342 GTAATCTGAT
Statistics
Matches: 49, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
48 23 0.47
49 26 0.53
ACGTcount: A:0.39, C:0.08, G:0.14, T:0.39
Consensus pattern (48 bp):
TTAACGTACAAGGATAAATTTATTCATTTTTTAATTAAAGGGGTACAA
Found at i:26148727 original size:61 final size:61
Alignment explanation
Indices: 26148541--26148727 Score: 304
Period size: 61 Copynumber: 3.1 Consensus size: 61
26148531 AAATCAGTTG
*
26148541 AAAAGTTGATAAAAGAGAAAATAC-AAATTCTTTTTGCTCTTAAGAAAATAATTATAAAGGG
1 AAAAGTTGATAAAAGAGAAAA-ACAAAATTCTTTTTGCTCTTAAGAAAATAATTATAAAGGA
* * *
26148602 AAAAGTTAATAAAAGAGAAAAGCAAAATTCTTTTTGGTCTTAAGAAAATAATTATAAAGGA
1 AAAAGTTGATAAAAGAGAAAAACAAAATTCTTTTTGCTCTTAAGAAAATAATTATAAAGGA
* *
26148663 AAAAGTTGATAAAAGAGAAAAACAAAATTCTTTTTGCTCTTAAGTAAATAATTATAAAGAA
1 AAAAGTTGATAAAAGAGAAAAACAAAATTCTTTTTGCTCTTAAGAAAATAATTATAAAGGA
26148724 AAAA
1 AAAA
26148728 AAATAAAGAA
Statistics
Matches: 116, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
60 1 0.01
61 115 0.99
ACGTcount: A:0.52, C:0.06, G:0.13, T:0.28
Consensus pattern (61 bp):
AAAAGTTGATAAAAGAGAAAAACAAAATTCTTTTTGCTCTTAAGAAAATAATTATAAAGGA
Found at i:26149482 original size:18 final size:18
Alignment explanation
Indices: 26149459--26149501 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
26149449 ATTTAAGGTG
26149459 TAATTAATTTAAAATT-TT
1 TAATTAA-TTAAAATTATT
*
26149477 TAATTAATTAAATTTATT
1 TAATTAATTAAAATTATT
26149495 TAATTAA
1 TAATTAA
26149502 AAATATATTC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 7 0.30
18 16 0.70
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (18 bp):
TAATTAATTAAAATTATT
Found at i:26153255 original size:13 final size:13
Alignment explanation
Indices: 26153237--26153263 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
26153227 AGTTGAGTCT
26153237 TACAAAGCTAAAC
1 TACAAAGCTAAAC
26153250 TACAAAGCTAAAC
1 TACAAAGCTAAAC
26153263 T
1 T
26153264 CAATTAACAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.52, C:0.22, G:0.07, T:0.19
Consensus pattern (13 bp):
TACAAAGCTAAAC
Found at i:26156464 original size:46 final size:44
Alignment explanation
Indices: 26156412--26156497 Score: 136
Period size: 46 Copynumber: 1.9 Consensus size: 44
26156402 AGAATAGAAA
*
26156412 TGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAGACAGGAT
1 TGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAGACAGGAT
*
26156458 TGAGCCATGTAAGTCCATATTATATATGGCATTGGAGACA
1 TGAGCCATGTAAGTCCATATTAAATATGGCATTGGAGACA
26156498 AGAATAATTC
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
44 17 0.45
46 21 0.55
ACGTcount: A:0.33, C:0.14, G:0.24, T:0.29
Consensus pattern (44 bp):
TGAGCCATGTAAGTCCATATTAAATATGGCATTGGAGACAGGAT
Found at i:26156511 original size:44 final size:45
Alignment explanation
Indices: 26156414--26156538 Score: 135
Period size: 44 Copynumber: 2.8 Consensus size: 45
26156404 AATAGAAATG
* * * *
26156414 AGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAGACAGGATTG
1 AGCCATGTAAGTCCATATTA-AAATATGGCATTGGAGACAAGAATA
*
26156460 AGCCATGTAAGTCCATATT-ATATATGGCATTGGAGACAAGAATA
1 AGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAAGAATA
** * * *
26156504 ATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 AGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
26156539 CAGGATATTG
Statistics
Matches: 66, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
44 35 0.53
45 1 0.02
46 30 0.45
ACGTcount: A:0.34, C:0.14, G:0.23, T:0.28
Consensus pattern (45 bp):
AGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAAGAATA
Found at i:26167883 original size:22 final size:22
Alignment explanation
Indices: 26167857--26167902 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
26167847 TTTGAAAAAT
*
26167857 TTACATATCAACTTATCGTTTA
1 TTACATATCAACTTACCGTTTA
26167879 TTACATATCAACTTACCGTTTA
1 TTACATATCAACTTACCGTTTA
26167901 TT
1 TT
26167903 GAAGCTCTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.30, C:0.20, G:0.04, T:0.46
Consensus pattern (22 bp):
TTACATATCAACTTACCGTTTA
Found at i:26169610 original size:22 final size:22
Alignment explanation
Indices: 26169585--26169628 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
26169575 GGCAGTGTGA
26169585 CATAGCCATGTGGCCCAACACG
1 CATAGCCATGTGGCCCAACACG
26169607 CATAGCCATGTGGCCCAACACG
1 CATAGCCATGTGGCCCAACACG
26169629 GGCCCTTACA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.27, C:0.36, G:0.23, T:0.14
Consensus pattern (22 bp):
CATAGCCATGTGGCCCAACACG
Found at i:26170167 original size:13 final size:13
Alignment explanation
Indices: 26170149--26170187 Score: 53
Period size: 13 Copynumber: 3.0 Consensus size: 13
26170139 TTTGTTCTTA
26170149 TTATTATTATTAT
1 TTATTATTATTAT
*
26170162 TTATTAATATTAGT
1 TTATTATTATTA-T
26170176 TTATT-TTATTAT
1 TTATTATTATTAT
26170188 GTTTGCTGCT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
12 1 0.04
13 16 0.70
14 6 0.26
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.67
Consensus pattern (13 bp):
TTATTATTATTAT
Found at i:26170167 original size:16 final size:18
Alignment explanation
Indices: 26170146--26170187 Score: 52
Period size: 16 Copynumber: 2.4 Consensus size: 18
26170136 CTTTTTGTTC
26170146 TTATTATTATTA-TTA-T
1 TTATTATTATTAGTTATT
*
26170162 TTATTAATATTAGTTTATT
1 TTATTATTATTAG-TTATT
26170181 TTATTAT
1 TTATTAT
26170188 GTTTGCTGCT
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
16 11 0.52
18 3 0.14
19 7 0.33
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (18 bp):
TTATTATTATTAGTTATT
Found at i:26172657 original size:46 final size:46
Alignment explanation
Indices: 26172607--26172781 Score: 212
Period size: 46 Copynumber: 3.8 Consensus size: 46
26172597 TGGTTGAGCA
*
26172607 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
26172653 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTTA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
26172700 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
26172746 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG
26172782 AGCGGGTTAC
Statistics
Matches: 109, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
45 4 0.04
46 62 0.57
47 29 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.21, C:0.22, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:26172763 original size:93 final size:93
Alignment explanation
Indices: 26172604--26172775 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
26172594 GGATGGTTGA
* * *
26172604 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAGT
26172669 TGAGTCCGAGTTCGTTAGATGTAACTAG
66 TGAGTCCGAGTTCGTTAGATGTAACTAG
* *
26172697 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAGT
26172762 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
26172776 CTTATGAGCG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTTAGATGTAACTAG
Found at i:26174130 original size:6 final size:6
Alignment explanation
Indices: 26174119--26174182 Score: 84
Period size: 6 Copynumber: 11.5 Consensus size: 6
26174109 AGTCCATTGA
26174119 TTTTAT TTTTA- TTTTA- TTTTA- TTTTA- TTTTA- TTTTAT TTTTAT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT
*
26174162 TTTTAT TTTTAT TGTTAT TTT
1 TTTTAT TTTTAT TTTTAT TTT
26174183 CGTAGACTTA
Statistics
Matches: 55, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
5 25 0.45
6 30 0.55
ACGTcount: A:0.17, C:0.00, G:0.02, T:0.81
Consensus pattern (6 bp):
TTTTAT
Found at i:26174133 original size:5 final size:5
Alignment explanation
Indices: 26174118--26174182 Score: 85
Period size: 5 Copynumber: 12.0 Consensus size: 5
26174108 GAGTCCATTG
26174118 ATTTT ATTTTT ATTTT ATTTT ATTTT ATTTT ATTTT ATTTTT ATTTTT
1 ATTTT A-TTTT ATTTT ATTTT ATTTT ATTTT ATTTT A-TTTT A-TTTT
26174166 ATTTTT ATTGTT ATTTT
1 A-TTTT ATT-TT ATTTT
26174183 CGTAGACTTA
Statistics
Matches: 57, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
5 30 0.53
6 27 0.47
ACGTcount: A:0.18, C:0.00, G:0.02, T:0.80
Consensus pattern (5 bp):
ATTTT
Found at i:26174140 original size:10 final size:11
Alignment explanation
Indices: 26174118--26174182 Score: 98
Period size: 10 Copynumber: 5.9 Consensus size: 11
26174108 GAGTCCATTG
26174118 ATTTTATTTTT
1 ATTTTATTTTT
26174129 ATTTTA-TTTT
1 ATTTTATTTTT
26174139 ATTTTA-TTTT
1 ATTTTATTTTT
26174149 ATTTTATTTTT
1 ATTTTATTTTT
26174160 ATTTTTATTTTT
1 A-TTTTATTTTT
26174172 ATTGTTATTTT
1 ATT-TTATTTT
26174183 CGTAGACTTA
Statistics
Matches: 51, Mismatches: 0, Indels: 5
0.91 0.00 0.09
Matches are distributed among these distances:
10 20 0.39
11 13 0.25
12 18 0.35
ACGTcount: A:0.18, C:0.00, G:0.02, T:0.80
Consensus pattern (11 bp):
ATTTTATTTTT
Found at i:26175556 original size:46 final size:46
Alignment explanation
Indices: 26175504--26175624 Score: 154
Period size: 46 Copynumber: 2.6 Consensus size: 46
26175494 TGTCATAGTG
* * * *
26175504 TCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACTCA-TTTCATGTCACGCTACCATGGTA
* *
26175550 TCTTTCAACCATGGTCTTATTCATTTCATGTCACGCTATCATGGTA
1 TCTTTCAACCATGGTCTTACTCATTTCATGTCACGCTACCATGGTA
**
26175596 TCTTTCAACCATGGTCTTACAAATTTCAT
1 TCTTTCAACCATGGTCTTACTCATTTCAT
26175625 ATCAGAGAGC
Statistics
Matches: 65, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
45 4 0.06
46 61 0.94
ACGTcount: A:0.21, C:0.23, G:0.12, T:0.43
Consensus pattern (46 bp):
TCTTTCAACCATGGTCTTACTCATTTCATGTCACGCTACCATGGTA
Found at i:26178255 original size:46 final size:47
Alignment explanation
Indices: 26178111--26178318 Score: 169
Period size: 46 Copynumber: 4.5 Consensus size: 47
26178101 TTTGTGTGCT
* * ** *
26178111 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATTACG-AGAGCC
1 AGTGTAAGACATGTCTGGGACATACATCGGCCTCAAGATGTAGAGCC
* * * * * ** ** *
26178157 AGTGTAAGACCATGTTTGAGACATGGCATCGACATTGAGA-CAAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-ACATCGGCCTCAAGATGTAGAGCC
26178205 AGTGTAAGACATGTCTGGGACATACATCGGCCTCAAGATGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATACATCGGCCTCAAGATGTAGAGCC
* *
26178251 AGTGTAAGACATGTCTGGGACATACATCGG-CTACGAGATGT---GTC
1 AGTGTAAGACATGTCTGGGACATACATCGGCCT-CAAGATGTAGAGCC
*
26178295 AGTGTAAGACCATGTTTGGGACAT
1 AGTGTAAGA-CATGTCTGGGACAT
26178319 GGCATCGGTA
Statistics
Matches: 132, Mismatches: 24, Indels: 13
0.78 0.14 0.08
Matches are distributed among these distances:
44 11 0.08
45 15 0.11
46 59 0.45
47 25 0.19
48 22 0.17
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATACATCGGCCTCAAGATGTAGAGCC
Found at i:26178325 original size:46 final size:45
Alignment explanation
Indices: 26178152--26178473 Score: 222
Period size: 46 Copynumber: 6.8 Consensus size: 45
26178142 CACATTACGA
* * * *
26178152 GAGCCAGTGTAAGACCATGTTTGAGACATGGCATCGACATTGAGACAA
1 GAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGC-TCGAG--AT
* * * *
26178200 GAGCTAGTGTAAGA-CATGTCTGGGACAT-ACATCGGCCTCAAGAT
1 GAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGG-CTCGAGAT
* *
26178244 GTAAGCCAGTGTAAGA-CATGTCTGGGACAT-ACATCGGCTACGAGAT
1 G--AGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCT-CGAGAT
* * *
26178290 GTGTCAGTGTAAGACCATGTTTGGGACATGGCATCGG-TACAGATATAT
1 GAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCT-C-G--AGAT
** * **
26178338 GAGAGCTTGTGTAAGACCATGTTTGGGACATGGCATCAGCCTCGATTT
1 --GAGCCAGTGTAAGACCATGTTTGGGACATGGCATC-GGCTCGAGAT
* * * *
26178386 CGGTAGTCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATGGAT
1 --G-AGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCTCGA--GAT
* *
26178436 GAGCCAGTGAAAGACCATGTTTGGGACATGACATCGGC
1 GAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGC
26178474 ATTATACCCT
Statistics
Matches: 222, Mismatches: 36, Indels: 33
0.76 0.12 0.11
Matches are distributed among these distances:
44 13 0.06
45 18 0.08
46 54 0.24
47 45 0.20
48 26 0.12
49 30 0.14
50 33 0.15
51 2 0.01
52 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (45 bp):
GAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCTCGAGAT
Found at i:26178343 original size:140 final size:141
Alignment explanation
Indices: 26178111--26178472 Score: 380
Period size: 140 Copynumber: 2.5 Consensus size: 141
26178101 TTTGTGTGCT
* *
26178111 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATTACGA-GAGCCAGTGTAAGACCATGTTTG
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTAC--GACGATGAGCCAGTGTAAGACCATGTTTG
* *
26178175 AGACATGGCATC-GACATTGAGACAAGAGCTAGTGTAAGA-CATGTCTGGGACAT-ACATCGGCC
64 GGACATGGCATCGGACA-TGAGACAAGAGCTAGTGTAAGACCATGTCTGGGACATGACATCAGCC
26178237 TCAAGAT-GTAAGCC
128 TCAAGATCGT-AGCC
* * *
26178251 AGTGTAAGACATGTCTGGGACATACATCGGCTACGA-GATGTGTCAGTGTAAGACCATGTTTGGG
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTACGACGATGAGCCAGTGTAAGACCATGTTTGGG
* * * * *
26178315 ACATGGCATCGGTACA-GATATATGAGAGCTTGTGTAAGACCATGTTTGGGACATGGCATCAGCC
66 ACATGGCATCGG-ACATGAGACA--AGAGCTAGTGTAAGACCATGTCTGGGACATGACATCAGCC
* ** *
26178379 TCGATTTCGGTAGTC
128 TCAAGATC-GTAGCC
* * * *
26178394 AGTGTAAGACCATGTCTGGGACATGGCATCGACT-TGATGGATGAGCCAGTGAAAGACCATGTTT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTACGA-CGATGAGCCAGTGTAAGACCATGTTT
*
26178458 GGGACATGACATCGG
63 GGGACATGGCATCGG
26178473 CATTATACCC
Statistics
Matches: 186, Mismatches: 23, Indels: 20
0.81 0.10 0.09
Matches are distributed among these distances:
137 2 0.01
138 37 0.20
139 1 0.01
140 49 0.26
141 13 0.07
142 11 0.06
143 12 0.06
144 18 0.10
145 7 0.04
146 36 0.19
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (141 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCTACGACGATGAGCCAGTGTAAGACCATGTTTGGG
ACATGGCATCGGACATGAGACAAGAGCTAGTGTAAGACCATGTCTGGGACATGACATCAGCCTCA
AGATCGTAGCC
Found at i:26190132 original size:14 final size:14
Alignment explanation
Indices: 26190113--26190147 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
26190103 TGGGGCATTC
*
26190113 GCATACATACGTCT
1 GCATACATACATCT
26190127 GCATACATACATCT
1 GCATACATACATCT
26190141 GCATACA
1 GCATACA
26190148 AAGCTTTTGA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.34, C:0.29, G:0.11, T:0.26
Consensus pattern (14 bp):
GCATACATACATCT
Found at i:26193458 original size:24 final size:24
Alignment explanation
Indices: 26193431--26193479 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
26193421 CAACGCGCAT
26193431 TCTATTATAGCACTTTAGTGCAAC
1 TCTATTATAGCACTTTAGTGCAAC
* * *
26193455 TCTATTATGGCATTTTGGTGCAAC
1 TCTATTATAGCACTTTAGTGCAAC
26193479 T
1 T
26193480 TTGTTAAGGC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.24, C:0.18, G:0.16, T:0.41
Consensus pattern (24 bp):
TCTATTATAGCACTTTAGTGCAAC
Found at i:26199660 original size:13 final size:13
Alignment explanation
Indices: 26199644--26199670 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
26199634 AAGTATTGGA
26199644 CATCTGTTATTGC
1 CATCTGTTATTGC
26199657 CATCTGTTATTGC
1 CATCTGTTATTGC
26199670 C
1 C
26199671 TTAGCTCGGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.26, G:0.15, T:0.44
Consensus pattern (13 bp):
CATCTGTTATTGC
Found at i:26199707 original size:24 final size:24
Alignment explanation
Indices: 26199680--26199727 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
26199670 CTTAGCTCGG
*
26199680 TCTTTTTCCTTGTGCCAGTTATTA
1 TCTTTCTCCTTGTGCCAGTTATTA
26199704 TCTTTCTCCTTGTGCCAGTTATTA
1 TCTTTCTCCTTGTGCCAGTTATTA
26199728 CTCATCTCAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.12, C:0.23, G:0.12, T:0.52
Consensus pattern (24 bp):
TCTTTCTCCTTGTGCCAGTTATTA
Found at i:26199735 original size:24 final size:24
Alignment explanation
Indices: 26199686--26199735 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
26199676 TCGGTCTTTT
*
26199686 TCCTTGTGCCAGTTATTATCTTTC
1 TCCTTGTGCCAGTTATTATCTATC
26199710 TCCTTGTGCCAGTTATTA-CTCATC
1 TCCTTGTGCCAGTTATTATCT-ATC
26199734 TC
1 TC
26199736 ATGTCATGAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
23 2 0.08
24 22 0.92
ACGTcount: A:0.14, C:0.28, G:0.12, T:0.46
Consensus pattern (24 bp):
TCCTTGTGCCAGTTATTATCTATC
Found at i:26205860 original size:50 final size:50
Alignment explanation
Indices: 26205736--26205984 Score: 284
Period size: 50 Copynumber: 4.8 Consensus size: 50
26205726 GATAATAACA
* * ** * *
26205736 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGAT-GG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGA-CCTCTCAT-CTCGG
* *
26205787 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * *
26205837 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* *
26205887 TGCCCATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC---ATC-T-CGG
* *
26205942 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
26205985 TTACCCAAAT
Statistics
Matches: 170, Mismatches: 21, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
49 1 0.01
50 92 0.54
51 33 0.19
53 2 0.01
54 1 0.01
55 2 0.01
56 39 0.23
ACGTcount: A:0.20, C:0.29, G:0.24, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:26205914 original size:100 final size:104
Alignment explanation
Indices: 26205735--26205984 Score: 357
Period size: 100 Copynumber: 2.4 Consensus size: 104
26205725 TGATAATAAC
**
26205735 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGATGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCGTGATGGTGCCCATGCCATG
* *
26205800 TCCCAGACATGGTCTTATAGGGGACCTCTC-ATC-T-CGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
* *
26205837 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGT-CTCGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGAT-GGTGCCCATGCCATG
26205900 TCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCA--ATCTTAAGG
* *
26205942 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
26205985 TTACCCAAAT
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 50 0.38
101 36 0.27
103 3 0.02
104 1 0.01
105 2 0.02
106 40 0.30
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (104 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGATGGTGCCCATGCCATGT
CCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
Found at i:26206100 original size:13 final size:13
Alignment explanation
Indices: 26206079--26206110 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
26206069 GCTTGGATCA
*
26206079 TCATCAAATAAAT
1 TCATAAAATAAAT
26206092 TCATAAAATAAAT
1 TCATAAAATAAAT
26206105 TCATAA
1 TCATAA
26206111 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:26206357 original size:30 final size:30
Alignment explanation
Indices: 26206322--26206379 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
26206312 CCTCGACTCT
*
26206322 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
26206352 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
26206380 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.03, T:0.41
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:26213453 original size:50 final size:50
Alignment explanation
Indices: 26213329--26213577 Score: 284
Period size: 50 Copynumber: 4.8 Consensus size: 50
26213319 GATAATAACA
* * ** * *
26213329 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGAT-GG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGA-CCTCTCAT-CTCGG
* *
26213380 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * *
26213430 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* *
26213480 TGCCCATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC---ATC-T-CGG
* *
26213535 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
26213578 TTACCCAAAT
Statistics
Matches: 170, Mismatches: 21, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
49 1 0.01
50 92 0.54
51 33 0.19
53 2 0.01
54 1 0.01
55 2 0.01
56 39 0.23
ACGTcount: A:0.20, C:0.29, G:0.24, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:26213507 original size:100 final size:104
Alignment explanation
Indices: 26213328--26213577 Score: 357
Period size: 100 Copynumber: 2.4 Consensus size: 104
26213318 TGATAATAAC
**
26213328 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGATGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCGTGATGGTGCCCATGCCATG
* *
26213393 TCCCAGACATGGTCTTATAGGGGACCTCTC-ATC-T-CGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
* *
26213430 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGT-CTCGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGAT-GGTGCCCATGCCATG
26213493 TCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCA--ATCTTAAGG
* *
26213535 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
26213578 TTACCCAAAT
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 50 0.38
101 36 0.27
103 3 0.02
104 1 0.01
105 2 0.02
106 40 0.30
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (104 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGATGGTGCCCATGCCATGT
CCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
Found at i:26213693 original size:13 final size:13
Alignment explanation
Indices: 26213672--26213703 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
26213662 GCTTGGATCA
*
26213672 TCATCAAATAAAT
1 TCATAAAATAAAT
26213685 TCATAAAATAAAT
1 TCATAAAATAAAT
26213698 TCATAA
1 TCATAA
26213704 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:26213951 original size:30 final size:29
Alignment explanation
Indices: 26213916--26213972 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 29
26213906 CCTCGACTCT
*
26213916 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTAC-ATTTTGCCCCTA
* *
26213946 AACTTTTACATAATTACATTTTTCCCC
1 AACTTTTACAAAATTACATTTTGCCCC
26213973 AAGGCTCGGA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 9 0.38
30 15 0.62
ACGTcount: A:0.32, C:0.25, G:0.02, T:0.42
Consensus pattern (29 bp):
AACTTTTACAAAATTACATTTTGCCCCTA
Found at i:26224224 original size:16 final size:16
Alignment explanation
Indices: 26224203--26224233 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
26224193 GGGAAATGTT
*
26224203 AAGTATTTATAATAAA
1 AAGTATATATAATAAA
26224219 AAGTATATATAATAA
1 AAGTATATATAATAA
26224234 CTAATATGTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.58, C:0.00, G:0.06, T:0.35
Consensus pattern (16 bp):
AAGTATATATAATAAA
Found at i:26226743 original size:28 final size:29
Alignment explanation
Indices: 26226707--26226865 Score: 100
Period size: 28 Copynumber: 5.7 Consensus size: 29
26226697 TAAGTACTCA
26226707 CCACAAAGGCTTTCC-TTACAGAGTTTCG
1 CCACAAAGGCTTTCCTTTACAGAGTTTCG
* *
26226735 CCACAAAGGC-ATCCTTTA-AGAGGTTCG
1 CCACAAAGGCTTTCCTTTACAGAGTTTCG
** * * * * *
26226762 CCATGAAGGCTTGCCGTTCCAAAGTTTTG
1 CCACAAAGGCTTTCCTTTACAGAGTTTCG
*
26226791 CCATAAAGG-TTGTCCTTTAACA-AG-TTCG
1 CCACAAAGGCTT-TCCTTT-ACAGAGTTTCG
* * * * *
26226819 CCACAAAGGC-TTACTTTTCAAATTTTTG
1 CCACAAAGGCTTTCCTTTACAGAGTTTCG
*
26226847 CCACAAAGGC-GTCCTTTAC
1 CCACAAAGGCTTTCCTTTAC
26226866 TGGTGTTTTA
Statistics
Matches: 99, Mismatches: 24, Indels: 16
0.71 0.17 0.12
Matches are distributed among these distances:
26 2 0.02
27 25 0.25
28 50 0.51
29 20 0.20
30 2 0.02
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.30
Consensus pattern (29 bp):
CCACAAAGGCTTTCCTTTACAGAGTTTCG
Found at i:26226761 original size:27 final size:28
Alignment explanation
Indices: 26226707--26226764 Score: 75
Period size: 27 Copynumber: 2.1 Consensus size: 28
26226697 TAAGTACTCA
* *
26226707 CCACAAAGGCTTTCCTTACAGAGTTTCG
1 CCACAAAGGCTATCCTTACAGAGGTTCG
26226735 CCACAAAGGC-ATCCTTTA-AGAGGTTCG
1 CCACAAAGGCTATCC-TTACAGAGGTTCG
26226762 CCA
1 CCA
26226765 TGAAGGCTTG
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
27 14 0.52
28 13 0.48
ACGTcount: A:0.28, C:0.29, G:0.19, T:0.24
Consensus pattern (28 bp):
CCACAAAGGCTATCCTTACAGAGGTTCG
Found at i:26226818 original size:57 final size:55
Alignment explanation
Indices: 26226707--26226864 Score: 154
Period size: 56 Copynumber: 2.8 Consensus size: 55
26226697 TAAGTACTCA
* * * * * * * *
26226707 CCACAAAGGCTTTCCTTACAGAGTTTCGCCACAAAGGCATCCTTTAAGAGGTTCG
1 CCACAAAGGCTTACGTTCCAAAGTTTTGCCACAAAGGCGTCCTTTAACAAGTTCG
** * * *
26226762 CCATGAAGGCTTGCCGTTCCAAAGTTTTGCCATAAAGGTTGTCCTTTAACAAGTTCG
1 CCACAAAGGCTT-ACGTTCCAAAGTTTTGCCACAAAGG-CGTCCTTTAACAAGTTCG
* * *
26226819 CCACAAAGGCTTACTTTTCAAATTTTTGCCACAAAGGCGTCCTTTA
1 CCACAAAGGCTTACGTTCCAAAGTTTTGCCACAAAGGCGTCCTTTA
26226865 CTGGTGTTTT
Statistics
Matches: 81, Mismatches: 20, Indels: 4
0.77 0.19 0.04
Matches are distributed among these distances:
55 18 0.22
56 39 0.48
57 24 0.30
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.30
Consensus pattern (55 bp):
CCACAAAGGCTTACGTTCCAAAGTTTTGCCACAAAGGCGTCCTTTAACAAGTTCG
Found at i:26226966 original size:34 final size:34
Alignment explanation
Indices: 26226928--26226995 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
26226918 CCCTCATCAT
*
26226928 TCTAGGACACACAGAGAACTATGTTAGGTAAGAA
1 TCTAGGACACACAGAGAACTACGTTAGGTAAGAA
26226962 TCTAGGACACACAGAGAACTACGTTAGGTAAGAA
1 TCTAGGACACACAGAGAACTACGTTAGGTAAGAA
26226996 CCTTCTTTTA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.41, C:0.16, G:0.24, T:0.19
Consensus pattern (34 bp):
TCTAGGACACACAGAGAACTACGTTAGGTAAGAA
Found at i:26227102 original size:53 final size:53
Alignment explanation
Indices: 26227010--26227118 Score: 155
Period size: 53 Copynumber: 2.1 Consensus size: 53
26227000 CTTTTAGTTG
* * * *
26227010 TTTCAATATGATGTCATAACCCACCAGTTACGGTTTTACATGATATGGTCTTC
1 TTTCAATATGATGTCATAACCCACCAGTTACGATCTTACACGATATGATCTTC
* * *
26227063 TTTCCATATGATGTCCTAACCCACTAGTTACGATCTTACACGATATGATCTTC
1 TTTCAATATGATGTCATAACCCACCAGTTACGATCTTACACGATATGATCTTC
26227116 TTT
1 TTT
26227119 AGTGACATGG
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
53 49 1.00
ACGTcount: A:0.26, C:0.23, G:0.13, T:0.39
Consensus pattern (53 bp):
TTTCAATATGATGTCATAACCCACCAGTTACGATCTTACACGATATGATCTTC
Done.