Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1285
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 49693
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.32
Found at i:968 original size:40 final size:40
Alignment explanation
Indices: 885--1058 Score: 217
Period size: 40 Copynumber: 4.3 Consensus size: 40
875 TTGAATGCTG
* * * * * *
885 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
925 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
965 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1005 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1045 TCCGGGTTAAGTCC
1 TCCGGGTTAAGTCC
1059 GATCCGGGTT
Statistics
Matches: 119, Mismatches: 12, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
39 1 0.01
40 110 0.92
41 8 0.07
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:1065 original size:16 final size:16
Alignment explanation
Indices: 1044--1074 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
1034 GAGTTATTAA
1044 ATCCGGGTTAAGTCCG
1 ATCCGGGTTAAGTCCG
*
1060 ATCCGGGTTATGTCC
1 ATCCGGGTTAAGTCC
1075 CGAAGGCATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.16, C:0.26, G:0.29, T:0.29
Consensus pattern (16 bp):
ATCCGGGTTAAGTCCG
Found at i:1143 original size:95 final size:95
Alignment explanation
Indices: 964--1148 Score: 230
Period size: 95 Copynumber: 1.9 Consensus size: 95
954 GAGATACTAA
* * *
964 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
** * *
1029 CGTGCGAGTTATTAAATCCGGGTTAAGTCCG
66 CGAACGAGTGACTAAATCC-GGTTAAGTCCG
* * *
1060 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
* *
1124 TGAACGAG-GAGCTATATCCGGTTAA
66 CGAACGAGTGA-CTAAATCCGGTTAA
1149 ATCCCGAAGG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
94 7 0.09
95 45 0.59
96 24 0.32
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (95 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
CGAACGAGTGACTAAATCCGGTTAAGTCCG
Found at i:8858 original size:40 final size:40
Alignment explanation
Indices: 8775--9037 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
8765 TTGAATGCTG
* * * * * *
8775 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
8815 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
8855 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
8895 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* *
8935 TCCGGGTTAAGTCCCGAAGGCAGTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
8975 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
9014 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
9038 TGAACGAGGA
Statistics
Matches: 199, Mismatches: 21, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 35 0.18
40 156 0.78
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:9057 original size:79 final size:80
Alignment explanation
Indices: 8814--9072 Score: 238
Period size: 80 Copynumber: 3.3 Consensus size: 80
8804 AAGTGAATAT
* * * * * * *
8814 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAG
** * *
8878 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
8894 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCAGT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
** ** *
8959 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * * *
8974 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
* *
9038 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
9053 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
9073 TACGTGATTT
Statistics
Matches: 154, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
78 14 0.09
79 47 0.31
80 93 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.25
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
CGAACGAGGAGCTAA
Found at i:12131 original size:12 final size:12
Alignment explanation
Indices: 12114--12155 Score: 50
Period size: 12 Copynumber: 3.4 Consensus size: 12
12104 AAAGACAATT
12114 AATAATTAATAA
1 AATAATTAATAA
*
12126 AATAA-TATTTAA
1 AATAATTA-ATAA
12138 AATAATTAATTAA
1 AATAATTAA-TAA
12151 AATAA
1 AATAA
12156 ATTGACAAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
11 2 0.08
12 13 0.52
13 10 0.40
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (12 bp):
AATAATTAATAA
Found at i:18189 original size:29 final size:29
Alignment explanation
Indices: 18142--18204 Score: 99
Period size: 29 Copynumber: 2.2 Consensus size: 29
18132 TGAAAGGAGG
* *
18142 CACTATTGATTTTTGTTTTTCAGAATTTA
1 CACTATTGATTTCTATTTTTCAGAATTTA
18171 CACTATTGATTTCTATTTTTCAGAATTTA
1 CACTATTGATTTCTATTTTTCAGAATTTA
*
18200 TACTA
1 CACTA
18205 ACTCAAAGCA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.27, C:0.13, G:0.08, T:0.52
Consensus pattern (29 bp):
CACTATTGATTTCTATTTTTCAGAATTTA
Found at i:18424 original size:49 final size:49
Alignment explanation
Indices: 18350--18447 Score: 169
Period size: 49 Copynumber: 2.0 Consensus size: 49
18340 GTTTGGAACT
*
18350 AGTTTCGATTTTCCAACCAAGTGGTCAATACCTAGTAAGAATGTATGCC
1 AGTTTCGATTTTCCAACCAACTGGTCAATACCTAGTAAGAATGTATGCC
* *
18399 AGTTTTGATTTTCCAACCGACTGGTCAATACCTAGTAAGAATGTATGCC
1 AGTTTCGATTTTCCAACCAACTGGTCAATACCTAGTAAGAATGTATGCC
18448 TGCGAAAACA
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
49 46 1.00
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.32
Consensus pattern (49 bp):
AGTTTCGATTTTCCAACCAACTGGTCAATACCTAGTAAGAATGTATGCC
Found at i:27155 original size:40 final size:40
Alignment explanation
Indices: 27098--27274 Score: 191
Period size: 40 Copynumber: 4.5 Consensus size: 40
27088 CGAATGATAA
* *
27098 CCGGGCTAAGTCCCGAAGGTATTTGTCCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTCCGAGTGACTATA-T
* * * *
27138 CTGGGCTAAGTTCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTCCGAGTGACTATAT
* * * *
27178 CCGGGCTAGGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTCCGAGTGACTATAT
**
27218 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGT-AGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTCCGAGTGA-CTATAT
*
27258 CC-GGCTAAAT-CCGAAGG
1 CCGGGCTAAGTCCCGAAGG
27275 TACTTGGTTT
Statistics
Matches: 121, Mismatches: 14, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
38 7 0.06
39 8 0.07
40 105 0.87
41 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTCCGAGTGACTATAT
Found at i:27234 original size:80 final size:80
Alignment explanation
Indices: 27098--27274 Score: 218
Period size: 80 Copynumber: 2.2 Consensus size: 80
27088 CGAATGATAA
* * * * *
27098 CCGGGCTAAGTCCCGAAGGTATTTGTCCTAGTGACTAATTCTGGGCTAAGTTCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTCCGAGTGACTAATACCGGGCTAAGTCCCGAAGGCATTTG
*
27163 TGCGAGTTA-CTATAT
66 AGCGAG-TAGCTATAT
* * *
27178 CCGGGCTAGGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTCCGAGTGACTAAT-ACCGGGCTAAGTCCCGAAGGCATTT
27242 GAGCGAGTAGCTATAT
65 GAGCGAGTAGCTATAT
*
27258 CC-GGCTAAAT-CCGAAGG
1 CCGGGCTAAGTCCCGAAGG
27275 TACTTGGTTT
Statistics
Matches: 84, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
78 7 0.08
79 10 0.12
80 67 0.80
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTCCGAGTGACTAATACCGGGCTAAGTCCCGAAGGCATTTG
AGCGAGTAGCTATAT
Found at i:35339 original size:40 final size:40
Alignment explanation
Indices: 35295--35471 Score: 236
Period size: 40 Copynumber: 4.5 Consensus size: 40
35285 CGAATGATAA
* * *
35295 CCGGGCTAAGTCCCGAATGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
35335 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
35375 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
35415 CCGGGCTAAGT-CCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* * *
35454 -CTGGCTAAATCTCGAAGG
1 CCGGGCTAAGTCCCGAAGG
35472 TACTTGGTTT
Statistics
Matches: 125, Mismatches: 9, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
38 10 0.08
39 29 0.23
40 85 0.68
41 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:43708 original size:81 final size:82
Alignment explanation
Indices: 43571--43738 Score: 204
Period size: 81 Copynumber: 2.1 Consensus size: 82
43561 ATGATAACCG
* * *
43571 GGCTAAGTCCCCGAATGCATTTGTGCTAGTGACTAATTCCGGGCTAAAGTCCCGAAGGCATTGTG
1 GGCTAAGTCCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAAGTCCCGAAGGCATT-TG
43636 -GCGAGTTA-CTATATACC
65 AGCGAG-TAGCTATATACC
* *
43653 GGCTAGGT-CCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCT-AAGTCCGCGAAGGCATTT
1 GGCTAAGTCCCCGAAGGCATTTGTGCGAGTGACTAAT-ACCGGGCTAAAGTCC-CGAAGGCATTT
*
43715 GAGCGAGTAGCTATAT-CT
64 GAGCGAGTAGCTATATACC
43733 GGCTAA
1 GGCTAA
43739 ATCTCGAAGG
Statistics
Matches: 75, Mismatches: 7, Indels: 10
0.82 0.08 0.11
Matches are distributed among these distances:
80 18 0.24
81 50 0.67
82 7 0.09
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (82 bp):
GGCTAAGTCCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAAGTCCCGAAGGCATTTGA
GCGAGTAGCTATATACC
Found at i:43729 original size:41 final size:41
Alignment explanation
Indices: 43567--43730 Score: 194
Period size: 41 Copynumber: 4.0 Consensus size: 41
43557 CCGAATGATA
* * *
43567 ACCGGGCTAAGTCCCCGAATGCATTTGTGCTAGTGACTA-AT
1 ACCGGGCTAAGT-CCCGAAGGCATTTGTGCGAGTTACTATAT
*
43608 TCCGGGCTAAAGTCCCGAAGGCA-TTGTGGCGAGTTACTATAT
1 ACCGGGCT-AAGTCCCGAAGGCATTTGT-GCGAGTTACTATAT
*
43650 ACC-GGCTAGGTCCCGAAGGCATTTGTGCGAGTTACTATA-
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
43689 ACCGGGCTAAGTCCGCGAAGGCATTTGAGCGAG-TAGCTATAT
1 ACCGGGCTAAGTCC-CGAAGGCATTTGTGCGAGTTA-CTATAT
43731 CTGGCTAAAT
Statistics
Matches: 107, Mismatches: 8, Indels: 15
0.82 0.06 0.12
Matches are distributed among these distances:
39 3 0.03
40 41 0.38
41 55 0.51
42 8 0.07
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (41 bp):
ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:45918 original size:37 final size:37
Alignment explanation
Indices: 45865--45967 Score: 165
Period size: 38 Copynumber: 2.8 Consensus size: 37
45855 GAAATAGTCC
45865 CCACACGTAGTTATCGGGTCTTACCCGGACA-AATCT
1 CCACACGTAGTTATCGGGTCTTACCCGGACATAATCT
*
45901 CCACAACGTAGTCATCGGGTTCTTACCCGGACATAATCT
1 CCAC-ACGTAGTTATCGGG-TCTTACCCGGACATAATCT
45940 CCACACGTAGTTATC-GGTCTTACCCGGA
1 CCACACGTAGTTATCGGGTCTTACCCGGA
45968 ATATATTTCC
Statistics
Matches: 62, Mismatches: 2, Indels: 6
0.89 0.03 0.09
Matches are distributed among these distances:
36 15 0.24
37 15 0.24
38 23 0.37
39 9 0.15
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.25
Consensus pattern (37 bp):
CCACACGTAGTTATCGGGTCTTACCCGGACATAATCT
Found at i:46163 original size:47 final size:48
Alignment explanation
Indices: 46106--46319 Score: 299
Period size: 47 Copynumber: 4.4 Consensus size: 48
46096 CACAATATAC
* * *
46106 ATACACATCTCCTACGTATTTCACACTAGCCATTC-GCTTTACCACAT
1 ATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACAT
46153 ATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAACAT
1 ATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACC-ACAT
* * *
46202 ATAAATATCTTCATATATATTTCACAATTAGCCATTCGGCTTTACCACAT
1 ATACATATC-TCATACATATTTCAC-ACTAGCCATTCGGCTTTACCACAT
* *
46252 GT--ATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACAT
1 ATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACAT
46298 ATACATATCTCATAACATATTT
1 ATACATATCTCAT-ACATATTT
46320 TTTATTCAAC
Statistics
Matches: 151, Mismatches: 9, Indels: 12
0.88 0.05 0.07
Matches are distributed among these distances:
46 25 0.17
47 46 0.30
48 22 0.15
49 20 0.13
50 19 0.13
51 19 0.13
ACGTcount: A:0.32, C:0.27, G:0.06, T:0.36
Consensus pattern (48 bp):
ATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACAT
Found at i:46259 original size:97 final size:94
Alignment explanation
Indices: 46122--46311 Score: 292
Period size: 97 Copynumber: 2.0 Consensus size: 94
46112 ATCTCCTACG
46122 TATTTCACACTAGCCATTCGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATT
1 TATTTCACACTAGCCATTCGCTTTACCACATATA-ATATCTCATACATATTTCACACTAGCCATT
46187 CGGCTTTACCAACATATAAATATCTTCATATA
65 CGGCTTTACC-ACATATAAATATC-TCATATA
* * *
46219 TATTTCACAATTAGCCATTCGGCTTTACCACATGT-ATATCTCATACATATTTCACATTAGCCAT
1 TATTTCAC-ACTAGCCATTC-GCTTTACCACATATAATATCTCATACATATTTCACACTAGCCAT
*
46283 TCGGCTTTACCACATATACATATCTCATA
64 TCGGCTTTACCACATATAAATATCTCATA
46312 ACATATTTTT
Statistics
Matches: 87, Mismatches: 4, Indels: 6
0.90 0.04 0.06
Matches are distributed among these distances:
95 5 0.06
96 12 0.14
97 47 0.54
98 10 0.11
99 13 0.15
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.36
Consensus pattern (94 bp):
TATTTCACACTAGCCATTCGCTTTACCACATATAATATCTCATACATATTTCACACTAGCCATTC
GGCTTTACCACATATAAATATCTCATATA
Found at i:46339 original size:52 final size:47
Alignment explanation
Indices: 46132--46357 Score: 231
Period size: 52 Copynumber: 4.6 Consensus size: 47
46122 TATTTCACAC
* * *
46132 TAGCCATTC-GCTTTACCACATATACATATCTCATACATATTTCACAC
1 TAGCCATTCGGCTTTACCACATATA-ATATCTCATACATATTTAAAAT
* *
46179 TAGCCATTCGGCTTTACCAACATATAAATATCTTCATATATATTTCACAAT
1 TAGCCATTCGGCTTTACC-ACATAT-AATATC-TCATACATATTT-AAAAT
* * *
46230 TAGCCATTCGGCTTTACCACATGT-ATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATAATATCTCATACATATTTAAAAT
***
46276 TAGCCATTCGGCTTTACCACATATACATATCTCATAACATATTTTTTAT
1 TAGCCATTCGGCTTTACCACATATA-ATATCTCAT-ACATATTTAAAAT
*
46325 TCAACGCCATTCGGCTTTACCACACATATATAT
1 T--A-GCCATTCGGCTTTACCACATATA-ATAT
46358 ATTTATCTTG
Statistics
Matches: 152, Mismatches: 16, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
46 25 0.16
47 20 0.13
48 22 0.14
49 22 0.14
50 17 0.11
51 20 0.13
52 26 0.17
ACGTcount: A:0.31, C:0.26, G:0.07, T:0.36
Consensus pattern (47 bp):
TAGCCATTCGGCTTTACCACATATAATATCTCATACATATTTAAAAT
Done.