Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1976
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 47311
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.32
Found at i:9790 original size:39 final size:39
Alignment explanation
Indices: 9713--9816 Score: 104
Period size: 39 Copynumber: 2.6 Consensus size: 39
9703 TAGCTCCTCG
* * *
9713 TTCAAGTGCCTTCGGGACATAGCCCGGTTATAGTAACTCA
1 TTCAA-TGCCTTCGGGACTTAACCCGGTTATAGAAACTCA
* *
9753 TTCAATGCCTTCGGGACTTAACCCGGATTTTA-AAACTCG
1 TTCAATGCCTTCGGGACTTAACCCGG-TTATAGAAACTCA
**
9792 CACGAATGCCTTC-GGACTTAACCCG
1 TTC-AATGCCTTCGGGACTTAACCCG
9817 AATCTCGGCC
Statistics
Matches: 55, Mismatches: 7, Indels: 5
0.82 0.10 0.07
Matches are distributed among these distances:
39 37 0.67
40 18 0.33
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (39 bp):
TTCAATGCCTTCGGGACTTAACCCGGTTATAGAAACTCA
Found at i:9868 original size:65 final size:66
Alignment explanation
Indices: 9759--9882 Score: 180
Period size: 65 Copynumber: 1.9 Consensus size: 66
9749 CTCATTCAAT
* * *
9759 GCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTC-GGACTTAACCCGAATCTC
1 GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAAGGCCTTCGGGACTTAACCCGAATCTC
9823 G
66 G
* *
9824 GCCTTCGGGACTTAACCCGGA-ATTAGTATCTCGCACAAAGGCCTTCGGGACTTAACCCG
1 GCCTTCGGGACTTAACCCGGATATTA-AAACTCGCACAAAGGCCTTCGGGACTTAACCCG
9883 GAATTAATAA
Statistics
Matches: 52, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
64 3 0.06
65 37 0.71
66 12 0.23
ACGTcount: A:0.24, C:0.31, G:0.22, T:0.23
Consensus pattern (66 bp):
GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAAGGCCTTCGGGACTTAACCCGAATCTC
G
Found at i:9878 original size:40 final size:39
Alignment explanation
Indices: 9823--9964 Score: 146
Period size: 40 Copynumber: 3.6 Consensus size: 39
9813 CCCGAATCTC
9823 GGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACAAA
1 GGCCTTCGGGACTTAACCCGGAATTAGTA-CTCGCACAAA
*
9863 GGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACAAA
1 GGCCTTCGGGACTTAACCCGGAATTAGT-ACTCGCACAAA
** ** *
9903 TACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACAAA
1 GGCCTTCGGGA-CTTAACCCGGAAT-TAGT-AC-TCGCACAAA
*
9944 -GCCTTCGGGACTTAGCCCGGA
1 GGCCTTCGGGACTTAACCCGGA
9965 CAGCATTCAA
Statistics
Matches: 86, Mismatches: 10, Indels: 11
0.80 0.09 0.10
Matches are distributed among these distances:
39 5 0.06
40 69 0.80
41 12 0.14
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.23
Consensus pattern (39 bp):
GGCCTTCGGGACTTAACCCGGAATTAGTACTCGCACAAA
Found at i:32765 original size:47 final size:47
Alignment explanation
Indices: 32647--33241 Score: 911
Period size: 47 Copynumber: 12.3 Consensus size: 47
32637 AGACAGTGTA
32647 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
32694 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTC
1 --TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
32743 TATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAGGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
32790 TATATATGTGATAAGACCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
32837 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 --TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
32886 TATATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
32933 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAACGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
32980 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAACGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
33027 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTGAAGGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAA--T----GTG-A----AA-GTG
33086 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
33133 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * * * * * *
33180 TATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
33227 TATAAATGTGATAAG
1 TATATATGTGATAAG
33242 TCCCGAAGGG
Statistics
Matches: 510, Mismatches: 22, Indels: 30
0.91 0.04 0.05
Matches are distributed among these distances:
47 365 0.72
48 2 0.00
49 93 0.18
52 1 0.00
53 6 0.01
54 1 0.00
57 1 0.00
58 1 0.00
59 40 0.08
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.30
Consensus pattern (47 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
Found at i:32902 original size:143 final size:141
Alignment explanation
Indices: 32647--33241 Score: 911
Period size: 143 Copynumber: 4.1 Consensus size: 141
32637 AGACAGTGTA
32647 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGG
* * *
32712 CCTAATGGCCGATGTGATGAATGTGAAAGTCTATATATGTGATAAGGCCTAATGGCTGATGTGAT
64 CCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCTAATGGCCGATGTGAT
*
32777 GAATGTGAAGGTG
129 GAATGTGAAAGTG
*
32790 TATATATGTGATAAGACCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGG
32855 CCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCTAATGGCCGATGTGAT
64 CCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCTAATGGCCGATGTGAT
32920 GAATGTGAAAGTG
129 GAATGTGAAAGTG
*
32933 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAACGTGTATATATGTGATAAGGCC
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* *
32998 TAATGGCCGATGTGATGAATGTGAACGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
66 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCTAATGGCCGATGTGATGA
33063 ATGTGAAAGTGTATGTGAAGGTG
131 A--T----GTG-A----AA-GTG
33086 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* * * * * *
33151 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
66 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCTAATGGCCGATGTGATGA
33216 ATGTGAAAGTG
131 ATGTGAAAGTG
*
33227 TATAAATGTGATAAG
1 TATATATGTGATAAG
33242 TCCCGAAGGG
Statistics
Matches: 421, Mismatches: 19, Indels: 26
0.90 0.04 0.06
Matches are distributed among these distances:
141 99 0.24
142 2 0.00
143 184 0.44
146 1 0.00
147 6 0.01
148 1 0.00
151 1 0.00
152 2 0.00
153 125 0.30
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.30
Consensus pattern (141 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCTAATGGCCGATGTGATGA
ATGTGAAAGTG
Found at i:33088 original size:59 final size:58
Alignment explanation
Indices: 33016--33182 Score: 239
Period size: 59 Copynumber: 3.0 Consensus size: 58
33006 GATGTGATGA
33016 ATGTGAACGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 ATGTGAA-GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
33075 ATGTGAAGGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA--T----GTG-
1 ATGTGAA-GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
33127 A----AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 ATGTGAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
33181 AT
1 AT
33183 ATATGTGACA
Statistics
Matches: 99, Mismatches: 1, Indels: 20
0.82 0.01 0.17
Matches are distributed among these distances:
47 40 0.40
48 2 0.02
49 1 0.01
52 1 0.01
53 6 0.06
54 1 0.01
57 1 0.01
59 47 0.47
ACGTcount: A:0.31, C:0.08, G:0.31, T:0.31
Consensus pattern (58 bp):
ATGTGAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
Found at i:33090 original size:106 final size:106
Alignment explanation
Indices: 32969--33182 Score: 410
Period size: 106 Copynumber: 2.0 Consensus size: 106
32959 GATGTGATGA
*
32969 ATGTGAACGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAACGTGTATATAT
1 ATGTGAACGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
33034 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
66 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
*
33075 ATGTGAAGGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAACGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
33140 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
66 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
33181 AT
1 AT
33183 ATATGTGACA
Statistics
Matches: 106, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
106 106 1.00
ACGTcount: A:0.31, C:0.08, G:0.30, T:0.30
Consensus pattern (106 bp):
ATGTGAACGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
Found at i:33410 original size:37 final size:37
Alignment explanation
Indices: 33360--33460 Score: 202
Period size: 37 Copynumber: 2.7 Consensus size: 37
33350 CCGAGCTCTA
33360 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
33397 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
33434 AAGACCCGATGACTACGTGTGGAGATT
1 AAGACCCGATGACTACGTGTGGAGATT
33461 TCGTCTGAGC
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 64 1.00
ACGTcount: A:0.26, C:0.19, G:0.32, T:0.24
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
Found at i:34797 original size:40 final size:40
Alignment explanation
Indices: 34753--35159 Score: 611
Period size: 40 Copynumber: 10.2 Consensus size: 40
34743 GGCTAAATCT
34753 CGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTC
1 CGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTC
34793 CGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTC
1 CGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTC
*
34833 CGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTT
1 CGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTC
*
34873 CGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTT
1 CGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTC
* * *
34913 CGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAATCC
1 CGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTC
34953 CGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTC
1 CGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTC
* * *
34993 CGAAGAGCATTCGTGCTAGTGATATATCCAGG-CTAAATCC
1 CGAAGAGCATTCGTGCTAGTGATGTATCC-GGACTAAGTTC
35033 CGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTC
1 CGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTC
* ***
35073 CGAAGAGCATTCGTGCTAGTGATATATCCGTG-CTAAACCC
1 CGAAGAGCATTCGTGCTAGTGATGTATCCG-GACTAAGTTC
* * * * * * *
35113 CAAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAGGTCC
1 CGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTC
35153 CGAAGAG
1 CGAAGAG
35160 TAATCATGCT
Statistics
Matches: 338, Mismatches: 25, Indels: 8
0.91 0.07 0.02
Matches are distributed among these distances:
39 3 0.01
40 332 0.98
41 3 0.01
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
CGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTC
Found at i:38809 original size:47 final size:47
Alignment explanation
Indices: 38756--39344 Score: 936
Period size: 47 Copynumber: 12.4 Consensus size: 47
38746 CAGCCAAGAC
38756 AGTGTAATATATGTGATAAGG-CTAATGGCCGATGTGATGAATGTGAA
1 AGTGT-ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
38803 AGTGTAATATATGTGATAAGGCCTAATGG-CGATGTGATGAATGTGAA
1 AGTGT-ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
38850 AGTCTATATATTGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-A
1 AGTGTATATA-TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
38897 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
38944 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
38991 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
39038 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
39085 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-A
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
39131 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * *
39178 AGTGTATGTGAAGTGTATTATGTGATAGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATAT-ATGTG-A-TA----A-GGCCTAATGGCCGATGTGATGAATGTGAA
39233 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-A
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * * *
39279 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
39326 AGTGTATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
39345 TCCCGAAGGG
Statistics
Matches: 510, Mismatches: 18, Indels: 28
0.92 0.03 0.05
Matches are distributed among these distances:
46 125 0.25
47 310 0.61
48 28 0.05
49 1 0.00
50 2 0.00
52 2 0.00
53 1 0.00
54 5 0.01
55 36 0.07
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:39211 original size:55 final size:55
Alignment explanation
Indices: 39125--39285 Score: 205
Period size: 55 Copynumber: 3.0 Consensus size: 55
39115 GATGTGATGA
39125 ATGTGAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 ATGTGAAGTGTAT-TATGTGAT-A-GCCTAATGGCCGATGTGATGAATGTGAAAGTGT
39183 ATGTGAAGTGTATTATGTGATAGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 ATGTGAAGTGTATTATGTGATAGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
* * *
39238 ATAT-ATGTG-A-TA----A-GGCCTAATGGCCGATGTGATGAATGTG-AAGTGT
1 ATGTGAAGTGTATTATGTGATAGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
39284 AT
1 AT
39286 ATATGTGACA
Statistics
Matches: 100, Mismatches: 3, Indels: 12
0.87 0.03 0.10
Matches are distributed among these distances:
46 8 0.08
47 26 0.26
48 1 0.01
52 2 0.02
53 1 0.01
54 4 0.04
55 36 0.36
56 1 0.01
57 8 0.08
58 13 0.13
ACGTcount: A:0.30, C:0.07, G:0.30, T:0.32
Consensus pattern (55 bp):
ATGTGAAGTGTATTATGTGATAGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
Found at i:39324 original size:102 final size:101
Alignment explanation
Indices: 39104--39287 Score: 298
Period size: 102 Copynumber: 1.8 Consensus size: 101
39094 ATGTGATAAG
*
39104 GCCTAATGGCCGATGTGATGAATGTGAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 GCCTAATGACCGATGTGATGAATGTGAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
* * * *
39169 GAATGTGAAAGTGTATGTGAAGTGTATTATGTGATA
66 GAATGTGAAAGTGTATATGAAGTGTATCAGGCGATA
*
39205 GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGA
1 GCCTAATGACCGATGTGATGAATGTG-AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGA
39270 TGAATGTG-AAGTGTATAT
65 TGAATGTGAAAGTGTATAT
39288 ATGTGACAGG
Statistics
Matches: 81, Mismatches: 1, Indels: 2
0.96 0.01 0.02
Matches are distributed among these distances:
101 35 0.43
102 46 0.57
ACGTcount: A:0.30, C:0.09, G:0.30, T:0.31
Consensus pattern (101 bp):
GCCTAATGACCGATGTGATGAATGTGAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
GAATGTGAAAGTGTATATGAAGTGTATCAGGCGATA
Found at i:39513 original size:37 final size:37
Alignment explanation
Indices: 39463--39560 Score: 175
Period size: 35 Copynumber: 2.7 Consensus size: 37
39453 CCGAGCTCTA
39463 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
39500 AAGACCCGATGACT--GTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
39535 AAGACCCGATGACTACGTGT-GAGATT
1 AAGACCCGATGACTACGTGTGGAGATT
39561 TCGTCTGAGC
Statistics
Matches: 59, Mismatches: 0, Indels: 5
0.92 0.00 0.08
Matches are distributed among these distances:
35 35 0.59
36 6 0.10
37 18 0.31
ACGTcount: A:0.26, C:0.18, G:0.32, T:0.24
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
Found at i:40878 original size:40 final size:41
Alignment explanation
Indices: 40767--40878 Score: 117
Period size: 38 Copynumber: 2.8 Consensus size: 41
40757 TATTAACACC
* * *
40767 AGCACGAATGCTCTTTGGG-TTTA-GCATGGATATATCACT
1 AGCACGAATGCTCTTCGGGATTTAGGCCTGGATACATCACT
* * *
40806 AGCACGAATGCTCTTCGGAACTTAGTCC-GGATACATCAC-
1 AGCACGAATGCTCTTCGGGATTTAGGCCTGGATACATCACT
*
40845 A-CTCGAATGCTCTTCGGGATTTAGCGCCTGGATA
1 AGCACGAATGCTCTTCGGGATTTAG-GCCTGGATA
40879 TCCTAGACAC
Statistics
Matches: 59, Mismatches: 10, Indels: 7
0.78 0.13 0.09
Matches are distributed among these distances:
38 20 0.34
39 20 0.34
40 18 0.31
41 1 0.02
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.29
Consensus pattern (41 bp):
AGCACGAATGCTCTTCGGGATTTAGGCCTGGATACATCACT
Found at i:40892 original size:40 final size:39
Alignment explanation
Indices: 40769--40900 Score: 96
Period size: 38 Copynumber: 3.4 Consensus size: 39
40759 TTAACACCAG
* *
40769 CACGAATGCTCTTTGGG-TTTA-GCATGGATATATCACTAG-
1 CACGAATGCTCTTCGGGATTTAGGCCTGG--ATATC-CTAGA
* * * * *
40808 CACGAATGCTCTTCGGAACTTAGTCC-GGATA-CATCACA
1 CACGAATGCTCTTCGGGATTTAGGCCTGGATATCCT-AGA
*
40846 CTCGAATGCTCTTCGGGATTTAGCGCCTGGATATCCTAGA
1 CACGAATGCTCTTCGGGATTTAG-GCCTGGATATCCTAGA
40886 CACGAATTGCT-TTCG
1 CACGAA-TGCTCTTCG
40901 TTTGTCCGAT
Statistics
Matches: 71, Mismatches: 14, Indels: 15
0.71 0.14 0.15
Matches are distributed among these distances:
36 1 0.01
37 2 0.03
38 23 0.32
39 17 0.24
40 21 0.30
41 7 0.10
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (39 bp):
CACGAATGCTCTTCGGGATTTAGGCCTGGATATCCTAGA
Found at i:41045 original size:41 final size:40
Alignment explanation
Indices: 40930--41129 Score: 314
Period size: 41 Copynumber: 4.9 Consensus size: 40
40920 CTCTTTCGGA
*
40930 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCG-AAC
1 TTAGTCCGGATACATCACTAGCACGAATGCTCTTCGAAAC
40969 TTAGTCCGGATACATCACTAGCACGAATGCTCTCTTCGAAAC
1 TTAGTCCGGATACATCACTAGCACGAATG--CTCTTCGAAAC
*
41011 TTAGTCCGGATACAATCACATAGCACG-ATGCTCTTCGGAAC
1 TTAGTCCGGATAC-ATCAC-TAGCACGAATGCTCTTCGAAAC
*
41052 TTAGTCCGGATACATCACTAGCACGATATGCTCTTCGGAAC
1 TTAGTCCGGATACATCACTAGCACGA-ATGCTCTTCGAAAC
41093 TTAGTCCGGATACATCACTAGCACGAATGCTCTTCGA
1 TTAGTCCGGATACATCACTAGCACGAATGCTCTTCGA
41130 GATTTAGCAC
Statistics
Matches: 151, Mismatches: 3, Indels: 13
0.90 0.02 0.08
Matches are distributed among these distances:
39 35 0.23
40 15 0.10
41 70 0.46
42 16 0.11
43 8 0.05
44 7 0.05
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (40 bp):
TTAGTCCGGATACATCACTAGCACGAATGCTCTTCGAAAC
Found at i:42463 original size:37 final size:37
Alignment explanation
Indices: 42413--42511 Score: 168
Period size: 36 Copynumber: 2.7 Consensus size: 37
42403 GCTCAGACGA
42413 AATCTCCACACGTAGTCATCGGGGTCTTA-CCGGACAT
1 AATCTCCACACGTAGTCATC-GGGTCTTACCCGGACAT
42450 AATCTCCACACGTAGTCATCGGGTC-TACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
42486 AATCTCCACA-GTAGTCATCGGGTCTT
1 AATCTCCACACGTAGTCATCGGGTCTT
42512 TAGAGCTCGG
Statistics
Matches: 60, Mismatches: 0, Indels: 5
0.92 0.00 0.08
Matches are distributed among these distances:
35 16 0.27
36 24 0.40
37 20 0.33
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.25
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
Found at i:42695 original size:47 final size:47
Alignment explanation
Indices: 42627--43211 Score: 569
Period size: 47 Copynumber: 12.3 Consensus size: 47
42617 CCTATCGGCT
* * *
42627 TATCACAT-TATACA-TTCTCACATCCATCACGTTGG-CACCTCGGCCC
1 TATCACATATATACACTT-TCACATCCATCACATCGGCCA-CTAGGCCC
* * *
42673 TGTCACATATATACACTTTCACATTCCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACA-TCCATCACATCGGCCACTAGGCCC
* *
42721 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
1 TATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCC----C
* * * * *
42772 AATATATACACTTCACATACACTTTCACATTTCATCACATC-GCCATTAGGCCT
1 ----TAT-CACAT-ATATACACTTTCACA-TCCATCACATCGGCCACTAGGCCC
* * *
42825 TATCACATATATACAC--GCACATTCATCACATCGGCCATTAGG-CC
1 TATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCC
* * * *
42869 TATCACATATATACACGTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCC
* * *
42916 TATCACATATATACACTTTTCACATTCATCACATCGGGCCATTA-GCCT
1 TATCACATATATACAC-TTTCACATCCATCACATC-GGCCACTAGGCCC
* * * *
42964 TGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCC
* * *
43011 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCC
* * * *
43058 TATC-CATATATACACCTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCC
* * * *
43104 TATCACATATATAGAC-TTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCC
* * *
43150 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCAC--ATATATACACTTTCACATCCATCACATCGGCCACTAGGCCC
43199 TATCACATATATA
1 TATCACATATATA
43212 TACACTGTCT
Statistics
Matches: 489, Mismatches: 24, Indels: 51
0.87 0.04 0.09
Matches are distributed among these distances:
44 28 0.06
45 13 0.03
46 121 0.25
47 146 0.30
48 89 0.18
49 49 0.10
55 3 0.01
56 4 0.01
57 25 0.05
58 11 0.02
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.31
Consensus pattern (47 bp):
TATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCC
Found at i:42800 original size:95 final size:94
Alignment explanation
Indices: 42675--43211 Score: 827
Period size: 95 Copynumber: 5.6 Consensus size: 94
42665 CTCGGCCCTG
42675 TCACATATATACACTTTCACATTCCATCACATCGGCCATTAGGCCTTATCACATATATACACTTT
1 TCACATATATACACTTTCACATT-CATCACATCGGCCATTAGGCCTTATCACATATATACACTTT
42740 CACATTCATCACATCGGCCATTAGGCCTTA
65 CACATTCATCACATCGGCCATTAGGCCTTA
*
42770 TCAATATATACACTTCACATACACTTTCACATTTCATCACATC-GCCATTAGGCCTTATCACATA
1 TC-------ACA--T-ATATACACTTTCACA-TTCATCACATCGGCCATTAGGCCTTATCACATA
*
42834 TATACAC--GCACATTCATCACATCGGCCATTAGGCC-TA
55 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
*
42871 TCACATATATACACGTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTT
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC-TTT
*
42936 CACATTCATCACATCGGGCCATTA-GCCTTG
65 CACATTCATCACATC-GGCCATTAGGCCTTA
42966 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTC
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTC
43031 ACATTCATCACATCGGCCATTAGGCCTTA
66 ACATTCATCACATCGGCCATTAGGCCTTA
* *
43060 TC-CATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAGAC-TTC
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTC
43123 ACATTCATCACATCGGCCATTAGGCCTTA
66 ACATTCATCACATCGGCCATTAGGCCTTA
43152 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
1 TCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
43212 TACACTGTCT
Statistics
Matches: 410, Mismatches: 11, Indels: 42
0.89 0.02 0.09
Matches are distributed among these distances:
90 11 0.03
91 41 0.10
92 35 0.09
93 65 0.16
94 46 0.11
95 124 0.30
101 4 0.01
102 30 0.07
104 29 0.07
105 23 0.06
106 2 0.00
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.31
Consensus pattern (94 bp):
TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTC
ACATTCATCACATCGGCCATTAGGCCTTA
Found at i:42836 original size:58 final size:57
Alignment explanation
Indices: 42731--43211 Score: 225
Period size: 46 Copynumber: 9.9 Consensus size: 57
42721 TATCACATAT
42731 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAATATATACACTTCAC
1 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAATATATACACTTCAC
*
42788 ATACACTTTCACATTTCATCACATC-GCCATTAGGCCTTATCACATATATACA---CGC
1 ATACACTTTCACA-TTCATCACATCGGCCATTAGGCCTTATCA-ATATATACACTTCAC
*
42843 --ACA---T-----TCATCACATCGGCCATTAGGCCT-ATC-ACATAT--A------
1 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAATATATACACTTCAC
*
42880 -TACACGTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT--A---CAC
1 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA-ATATATACACTTCAC
* *
42932 -T----TTTCACATTCATCACATCGGGCCATTA-GCCTTGTC-------ACA--T-AT
1 ATACACTTTCACATTCATCACATC-GGCCATTAGGCCTTATCAATATATACACTTCAC
*
42974 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC-------ACA--T-AT
1 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAATATATACACTTCAC
*
43021 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC--CATAT--A--T-AC
1 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAATATATACACTTCAC
*
43071 --AC-C-TTCACATTCATCACATCGGCCATTAGGCCTTATC-------ACA--T-AT
1 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAATATATACACTTCAC
* *
43114 ATAGAC-TTCACATTCATCACATCGGCCATTAGGCCTTATC-ACATAT--A--T---
1 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAATATATACACTTCAC
43162 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
1 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA-ATATATA
43212 TACACTGTCT
Statistics
Matches: 364, Mismatches: 12, Indels: 101
0.76 0.03 0.21
Matches are distributed among these distances:
38 3 0.01
40 1 0.00
41 1 0.00
42 7 0.02
43 4 0.01
44 13 0.04
45 13 0.04
46 100 0.27
47 76 0.21
48 31 0.09
49 48 0.13
50 6 0.02
51 5 0.01
52 1 0.00
53 3 0.01
55 2 0.01
57 30 0.08
58 20 0.05
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.31
Consensus pattern (57 bp):
ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAATATATACACTTCAC
Found at i:42898 original size:46 final size:47
Alignment explanation
Indices: 42788--43211 Score: 709
Period size: 46 Copynumber: 9.1 Consensus size: 47
42778 TACACTTCAC
42788 ATACACTTTCACATTTCATCACATC-GCCATTAGGCCTTATCACATAT
1 ATACACTTTCACA-TTCATCACATCGGCCATTAGGCCTTATCACATAT
*
42835 ATACAC--GCACATTCATCACATCGGCCATTAGGCC-TATCACATAT
1 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
*
42879 ATACACGTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
1 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
*
42926 ATACACTTTTCACATTCATCACATCGGGCCATTA-GCCTTGTCACATAT
1 ATACAC-TTTCACATTCATCACATC-GGCCATTAGGCCTTATCACATAT
42974 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
1 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
43021 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC-CATAT
1 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
*
43067 ATACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
1 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
*
43114 ATAGAC-TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
1 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATAT
43162 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
1 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
43209 ATA
1 ATA
43212 TACACTGTCT
Statistics
Matches: 358, Mismatches: 8, Indels: 22
0.92 0.02 0.06
Matches are distributed among these distances:
44 27 0.08
45 15 0.04
46 116 0.32
47 111 0.31
48 45 0.13
49 44 0.12
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.31
Consensus pattern (47 bp):
ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
Found at i:43080 original size:188 final size:185
Alignment explanation
Indices: 42675--43211 Score: 821
Period size: 188 Copynumber: 2.8 Consensus size: 185
42665 CTCGGCCCTG
*
42675 TCACATATATACACTTTCACATTCCATCACATCGGCCATTAGGCCTTATCACATATATACACTTT
1 TCACATATATACACCTTCACATT-CATCACATCGGCCATTAGGCCTTATCACATATATACACTTT
*
42740 CACATTCATCACATCGGCCATTAGGCCTTATCAATATATACACTTCACATACACTTTCACATTTC
65 CACATTCATCACATCGGCCATTAGGCCTTATC-------ACA--T-ATATACACTTTCACA-TTC
42805 ATCACATC-GCCATTAGGCCTTATCACATATATACACGCACATTCATCACATCGGCCATTAGGCC
119 ATCACATCGGCCATTAGGCCTTATCACATATATACACGCACATTCATCACATCGGCCATTAGGCC
42869 TA
184 TA
*
42871 TCACATATATACACGTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTT
1 TCACATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC-TTT
*
42936 CACATTCATCACATCGGGCCATTA-GCCTTGTCACATATATACACTTTCACATTCATCACATCGG
65 CACATTCATCACATC-GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGG
*
43000 CCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
129 CCATTAGGCCTTATCACATATATACAC--GCACATTCATCACATCGGCCATTAGGCC-TA
*
43060 TC-CATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAGAC-TTC
1 TCACATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTC
43123 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGG
66 ACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACATCGG
43188 CCATTAGGCCTTATCACATATATA
129 CCATTAGGCCTTATCACATATATA
43212 TACACTGTCT
Statistics
Matches: 325, Mismatches: 7, Indels: 26
0.91 0.02 0.07
Matches are distributed among these distances:
185 19 0.06
186 68 0.21
187 1 0.00
188 137 0.42
189 7 0.02
195 38 0.12
196 47 0.14
197 8 0.02
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.31
Consensus pattern (185 bp):
TCACATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTC
ACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCC
ATTAGGCCTTATCACATATATACACGCACATTCATCACATCGGCCATTAGGCCTA
Found at i:46900 original size:40 final size:40
Alignment explanation
Indices: 46780--47182 Score: 559
Period size: 40 Copynumber: 10.2 Consensus size: 40
46770 CGCATGATTA
* * * * *
46780 CTCTTCGG-ACCTAGCCCGGATATAACACCAGCACGAATG
1 CTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATG
* *** * *
46819 CTCTTTGGGGTTTAG--CAGATATATCACTAGCA-GAATG
1 CTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATG
46856 CTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATG
1 CTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATG
* * *
46896 CTCTTCGGGATTTAG-CCTGGATATATCACTAGCACGATATG
1 CTCTTCGGAACTTAGTCC-GGATACATCACTAGCACGA-ATG
46937 CTCTTCGGAACTTAGTCCGGATACATCA-TAGCACGAATG
1 CTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATG
* * *
46976 CTCTTCGGGATTTAGCCCGGATACATCACTTAGCACGAATG
1 CTCTTCGGAACTTAGTCCGGATACATCAC-TAGCACGAATG
*
47017 CTCTTCGAAACTTAGTCCGGATACATCACTAGCACGAATG
1 CTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATG
*
47057 CTCTTCGAAACTTAGTCCGGATACATCACTAGCACGAATG
1 CTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATG
47097 CTC-TCGGAACTTAGTCCGGATACATCACTAGCACGAATG
1 CTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATG
47136 CTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATG
1 CTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATG
47176 CTCTTCG
1 CTCTTCG
47183 AGATTTAGCC
Statistics
Matches: 327, Mismatches: 27, Indels: 19
0.88 0.07 0.05
Matches are distributed among these distances:
37 16 0.05
38 14 0.04
39 90 0.28
40 144 0.44
41 61 0.19
42 2 0.01
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (40 bp):
CTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATG
Found at i:47195 original size:79 final size:80
Alignment explanation
Indices: 46780--47182 Score: 559
Period size: 79 Copynumber: 5.1 Consensus size: 80
46770 CGCATGATTA
* * * * * * *** * *
46780 CTCTTCGG-ACCTAGCCCGGATATAACACCAGCACGAATGCTCTTTGGGGTTTAG--CAGATATA
1 CTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACA
46842 TCACTAGCA-GAATG
66 TCACTAGCACGAATG
* * *
46856 CTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGGATTTAG-CCTGGATAT
1 CTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCC-GGATAC
46920 ATCACTAGCACGATATG
65 ATCACTAGCACGA-ATG
* * *
46937 CTCTTCGGAACTTAGTCCGGATACATCA-TAGCACGAATGCTCTTCGGGATTTAGCCCGGATACA
1 CTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACA
47001 TCACTTAGCACGAATG
66 TCAC-TAGCACGAATG
* *
47017 CTCTTCGAAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGAAACTTAGTCCGGATACA
1 CTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACA
47082 TCACTAGCACGAATG
66 TCACTAGCACGAATG
47097 CTC-TCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACA
1 CTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACA
47161 TCACTAGCACGAATG
66 TCACTAGCACGAATG
47176 CTCTTCG
1 CTCTTCG
47183 AGATTTAGCC
Statistics
Matches: 302, Mismatches: 16, Indels: 14
0.91 0.05 0.04
Matches are distributed among these distances:
76 8 0.03
77 39 0.13
78 1 0.00
79 92 0.30
80 85 0.28
81 77 0.25
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (80 bp):
CTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACA
TCACTAGCACGAATG
Done.