Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold2096
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 42380
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.31
Found at i:100 original size:29 final size:29
Alignment explanation
Indices: 58--116 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
48 TAACAAACTT
58 TGAAAAATTTCCAGACACTGCCCAATCTG
1 TGAAAAATTTCCAGACACTGCCCAATCTG
87 TGAAAAATTTCCAGACACTGCCCAATCTG
1 TGAAAAATTTCCAGACACTGCCCAATCTG
116 T
1 T
117 ACTAGTCGCT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.34, C:0.27, G:0.14, T:0.25
Consensus pattern (29 bp):
TGAAAAATTTCCAGACACTGCCCAATCTG
Found at i:1443 original size:39 final size:40
Alignment explanation
Indices: 1398--1620 Score: 240
Period size: 40 Copynumber: 5.7 Consensus size: 40
1388 GCTCCTCGTT
* * * *
1398 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
1438 C-AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
1477 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
1517 CAAAGGCCTTCGGG-CTTAACCCGGAATT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
1555 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
1596 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
1621 CAGCATTCAA
Statistics
Matches: 157, Mismatches: 20, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
37 2 0.01
38 20 0.13
39 57 0.36
40 67 0.43
41 11 0.07
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:1501 original size:79 final size:78
Alignment explanation
Indices: 1398--1620 Score: 252
Period size: 79 Copynumber: 2.8 Consensus size: 78
1388 GCTCCTCGTT
* * *
1398 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACTTAACCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAAGCCTTCGGGACTTAACCCGGA
*
1463 TTTAATAACTCGCA
66 ATT-ATAACTCGCA
* * * *
1477 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGG-CTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAA-GCCTTCGGGACTTAACCCGG
* *
1541 AATTGTATCTCGCA
65 AATTATAACTCGCA
* * * * * *
1555 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCA-CACAAAGCCTTCGGGACTTAACCCG
1619 GA
64 GA
1621 CAGCATTCAA
Statistics
Matches: 120, Mismatches: 20, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
77 3 0.03
78 42 0.35
79 66 0.55
80 9 0.08
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (78 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAAGCCTTCGGGACTTAACCCGGA
ATTATAACTCGCA
Found at i:1629 original size:41 final size:41
Alignment explanation
Indices: 1552--1629 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
1542 ATTGTATCTC
* * *
1552 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
1593 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
1630 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:9346 original size:39 final size:40
Alignment explanation
Indices: 9301--9524 Score: 233
Period size: 40 Copynumber: 5.7 Consensus size: 40
9291 GCTCCTCGTT
* * * *
9301 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
9341 C-AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
9380 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
9420 CAAAGGCCTTCGGG-CTTAACCCGGAACTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
** * * * *
9459 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
9500 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
9525 CAGCATTCAA
Statistics
Matches: 157, Mismatches: 20, Indels: 14
0.82 0.10 0.07
Matches are distributed among these distances:
38 2 0.01
39 66 0.42
40 78 0.50
41 11 0.07
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:9390 original size:79 final size:78
Alignment explanation
Indices: 9301--9525 Score: 247
Period size: 79 Copynumber: 2.8 Consensus size: 78
9291 GCTCCTCGTT
* * *
9301 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACTTAACCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAAGCCTTCGGGACTTAACCCGGA
*
9366 TTTAATAACTCGCA
66 CTT-ATAACTCGCA
* * * *
9380 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGG-CTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAA-GCCTTCGGGACTTAACCCGG
* *
9444 AACTTGTATCTCGCA
65 -ACTTATAACTCGCA
* * * * * *
9459 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCA-CACAAAGCCTTCGGGACTTAACCCG
9523 GAC
64 GAC
9526 AGCATTCAAT
Statistics
Matches: 121, Mismatches: 20, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
78 3 0.02
79 91 0.75
80 27 0.22
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.25
Consensus pattern (78 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAAGCCTTCGGGACTTAACCCGGA
CTTATAACTCGCA
Found at i:9533 original size:41 final size:41
Alignment explanation
Indices: 9456--9533 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
9446 CTTGTATCTC
* * *
9456 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
9497 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
9534 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:11259 original size:33 final size:33
Alignment explanation
Indices: 11222--11315 Score: 170
Period size: 33 Copynumber: 2.8 Consensus size: 33
11212 ATAGACCATG
* *
11222 TACAAAATTAGATCAGGGAAAAACTAAACCACA
1 TACAAATTTAGATCGGGGAAAAACTAAACCACA
11255 TACAAATTTAGATCGGGGAAAAACTAAACCACA
1 TACAAATTTAGATCGGGGAAAAACTAAACCACA
11288 TACAAATTTAGATCGGGGAAAAACTAAA
1 TACAAATTTAGATCGGGGAAAAACTAAA
11316 GCCTCGGATT
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 59 1.00
ACGTcount: A:0.51, C:0.16, G:0.15, T:0.18
Consensus pattern (33 bp):
TACAAATTTAGATCGGGGAAAAACTAAACCACA
Found at i:20600 original size:47 final size:47
Alignment explanation
Indices: 20542--20662 Score: 199
Period size: 47 Copynumber: 2.6 Consensus size: 47
20532 GCATTGGAAC
* *
20542 TAAGACAAGGATACCATGTAAGATCATGTTTGGACCATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
20589 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
* *
20636 TAAGA-TAGGATATCATGTAAGACCATG
1 TAAGACAAGGATACCATGTAAGACCATG
20663 CCAAGGCATG
Statistics
Matches: 70, Mismatches: 4, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
46 20 0.29
47 50 0.71
ACGTcount: A:0.35, C:0.14, G:0.25, T:0.26
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
Found at i:20782 original size:55 final size:55
Alignment explanation
Indices: 20642--20835 Score: 225
Period size: 55 Copynumber: 3.6 Consensus size: 55
20632 TTGGTAAGAT
* * *
20642 AGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC-A
1 AGGAAATCATGTAAGACCATGCCAAGGCATGGAATTGATGAGTTCTATAAGGCAA
* *
20696 AGGAAATCATGTAAGACCATGTCAAGACATGGAATTGATGAGTTACTATAAGGCAA
1 AGGAAATCATGTAAGACCATGCCAAGGCATGGAATTGATGAGTT-CTATAAGGCAA
** * *
20752 AGG-TCTCATGTAAGATCATGCCAAGGCATGGAATTGGTGAGTTC-ATAAGGC-A
1 AGGAAATCATGTAAGACCATGCCAAGGCATGGAATTGATGAGTTCTATAAGGCAA
* * * * *
20804 AGGATACCACGTAAGACCATGTCAAGACATGG
1 AGGAAATCATGTAAGACCATGCCAAGGCATGG
20836 CAATGGTAAG
Statistics
Matches: 120, Mismatches: 17, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
52 4 0.03
53 29 0.24
54 40 0.33
55 43 0.36
56 4 0.03
ACGTcount: A:0.36, C:0.16, G:0.25, T:0.23
Consensus pattern (55 bp):
AGGAAATCATGTAAGACCATGCCAAGGCATGGAATTGATGAGTTCTATAAGGCAA
Found at i:23288 original size:49 final size:49
Alignment explanation
Indices: 23211--23397 Score: 196
Period size: 49 Copynumber: 3.8 Consensus size: 49
23201 TAGCCGAAGC
*
23211 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
* * * *** *
23260 AATCTGGTACACTTAGTAGCCTGTACTTAGTACTACACACATGATCACAGT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGA-C-CAAT
* * **
23311 TTTCGGGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
** * * *
23360 TATCCAGTA-ACGTAGTAGCCTGTACATAGTACTACACA
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACA
23398 CGTGACCTCA
Statistics
Matches: 110, Mismatches: 26, Indels: 5
0.78 0.18 0.04
Matches are distributed among these distances:
48 25 0.23
49 46 0.42
50 2 0.02
51 37 0.34
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.28
Consensus pattern (49 bp):
TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
Found at i:23333 original size:100 final size:99
Alignment explanation
Indices: 23216--23398 Score: 303
Period size: 100 Copynumber: 1.8 Consensus size: 99
23206 GAAGCTATCT
** *
23216 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCTGGTACACTTAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCAGTA-ACGTAGTAGCC
*
23281 TGTACTTAGTACTACACACATGATCACAGTTTTCG
65 TGTACATAGTACTACACACATGATCACAGTTTTCG
* *
23316 GGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCAGTAACGTAGTAGCCT
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCAGTAACGTAGTAGCCT
23381 GTACATAGTACTACACAC
66 GTACATAGTACTACACAC
23399 GTGACCTCAC
Statistics
Matches: 77, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
99 28 0.36
100 49 0.64
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (99 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCAGTAACGTAGTAGCCT
GTACATAGTACTACACACATGATCACAGTTTTCG
Found at i:25874 original size:15 final size:15
Alignment explanation
Indices: 25816--25880 Score: 64
Period size: 15 Copynumber: 4.4 Consensus size: 15
25806 TAAAGATAAC
*
25816 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
25830 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
25845 GA-AAATCCCAAAATA
1 AAGAAAT-CCAGAATA
25860 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
25875 AAGAAA
1 AAGAAA
25881 CCCAAGATAC
Statistics
Matches: 42, Mismatches: 4, Indels: 9
0.76 0.07 0.16
Matches are distributed among these distances:
14 13 0.31
15 24 0.57
16 5 0.12
ACGTcount: A:0.63, C:0.14, G:0.12, T:0.11
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:25885 original size:30 final size:30
Alignment explanation
Indices: 25826--25885 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 30
25816 AAGAAAACCG
*
25826 AATAAAGAAATCCAAGATAGAAAATCCCAA
1 AATAAAGAAATCCAAGATAGAAAAACCCAA
25856 AATAAAGAAATCC-AGAATA-AAGAAACCCAA
1 AATAAAGAAATCCAAG-ATAGAA-AAACCCAA
25886 GATACGATAC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
29 4 0.15
30 23 0.85
ACGTcount: A:0.62, C:0.17, G:0.10, T:0.12
Consensus pattern (30 bp):
AATAAAGAAATCCAAGATAGAAAAACCCAA
Found at i:28999 original size:51 final size:49
Alignment explanation
Indices: 28876--29015 Score: 156
Period size: 51 Copynumber: 2.8 Consensus size: 49
28866 GAAGCTATCT
*
28876 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATTC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACACGCGACCAATAATTC
* * * * * * *
28925 AGTACACGTAGTAGCCTGTACTTAGTACTACACACGTGATCACAGT-TTTC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACACGCGA-C-CAATAATTC
* *
28975 GGGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGAC
1 -GGTACGCATAGTAGCCTGCACTTAGTACTACACACGCGAC
29016 ACGTAGTAGC
Statistics
Matches: 73, Mismatches: 15, Indels: 5
0.78 0.16 0.05
Matches are distributed among these distances:
49 33 0.45
50 5 0.07
51 35 0.48
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.26
Consensus pattern (49 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACACGCGACCAATAATTC
Found at i:31293 original size:13 final size:13
Alignment explanation
Indices: 31275--31299 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
31265 TTTAAATGTG
31275 TTTAATGTGTTTT
1 TTTAATGTGTTTT
31288 TTTAATGTGTTT
1 TTTAATGTGTTT
31300 GTTTGTATCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.00, G:0.16, T:0.68
Consensus pattern (13 bp):
TTTAATGTGTTTT
Found at i:31297 original size:22 final size:21
Alignment explanation
Indices: 31256--31299 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 21
31246 TTATTAAGTC
31256 TAATGTGTGTTTAAATGTGTT
1 TAATGTGTGTTTAAATGTGTT
* *
31277 TAATGTGTTTTTTTAATGTGTT
1 TAATGTG-TGTTTAAATGTGTT
31299 T
1 T
31300 GTTTGTATCT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 7 0.35
22 13 0.65
ACGTcount: A:0.20, C:0.00, G:0.20, T:0.59
Consensus pattern (21 bp):
TAATGTGTGTTTAAATGTGTT
Found at i:31433 original size:24 final size:23
Alignment explanation
Indices: 31400--31481 Score: 80
Period size: 24 Copynumber: 3.6 Consensus size: 23
31390 CAAAGGCTGT
*
31400 TACATTATTTAAAGTAGAGCATTA
1 TACATCATTTAAAG-AGAGCATTA
31424 TACATCATTTAAAG-GAGC-TGT-
1 TACATCATTTAAAGAGAGCAT-TA
* *
31445 TACATCATTTAAAGGAGGGAATTA
1 TACATCATTTAAA-GAGAGCATTA
*
31469 TACATCCTTTAAA
1 TACATCATTTAAA
31482 TTAGGCAGTC
Statistics
Matches: 49, Mismatches: 4, Indels: 10
0.78 0.06 0.16
Matches are distributed among these distances:
21 14 0.29
22 6 0.12
23 3 0.06
24 26 0.53
ACGTcount: A:0.39, C:0.12, G:0.15, T:0.34
Consensus pattern (23 bp):
TACATCATTTAAAGAGAGCATTA
Found at i:31450 original size:21 final size:21
Alignment explanation
Indices: 31395--31461 Score: 82
Period size: 21 Copynumber: 3.0 Consensus size: 21
31385 ACATACAAAG
*
31395 GCTGTTACATTATTTAAAGTAGA
1 GCTGTTACATCATTTAAAG--GA
31418 GCAT-TATACATCATTTAAAGGA
1 GC-TGT-TACATCATTTAAAGGA
31440 GCTGTTACATCATTTAAAGGA
1 GCTGTTACATCATTTAAAGGA
31461 G
1 G
31462 GGAATTATAC
Statistics
Matches: 40, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
21 18 0.45
22 5 0.12
23 3 0.08
24 14 0.35
ACGTcount: A:0.36, C:0.12, G:0.18, T:0.34
Consensus pattern (21 bp):
GCTGTTACATCATTTAAAGGA
Found at i:31455 original size:45 final size:45
Alignment explanation
Indices: 31395--31481 Score: 129
Period size: 45 Copynumber: 1.9 Consensus size: 45
31385 ACATACAAAG
* * *
31395 GCTGTTACATTATTTAAAGTAGAGCATTATACATCATTTAAAGGA
1 GCTGTTACATCATTTAAAGGAGAGAATTATACATCATTTAAAGGA
* *
31440 GCTGTTACATCATTTAAAGGAGGGAATTATACATCCTTTAAA
1 GCTGTTACATCATTTAAAGGAGAGAATTATACATCATTTAAA
31482 TTAGGCAGTC
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 37 1.00
ACGTcount: A:0.37, C:0.13, G:0.16, T:0.34
Consensus pattern (45 bp):
GCTGTTACATCATTTAAAGGAGAGAATTATACATCATTTAAAGGA
Found at i:32780 original size:12 final size:13
Alignment explanation
Indices: 32763--32791 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
32753 CAAACTTTTT
32763 AAAAAAACAAAAA
1 AAAAAAACAAAAA
32776 AAAAAAACAAAAA
1 AAAAAAACAAAAA
32789 AAA
1 AAA
32792 CGCCACCCCG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.93, C:0.07, G:0.00, T:0.00
Consensus pattern (13 bp):
AAAAAAACAAAAA
Done.