Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold3185
Parameters: 2 7 7 80 10 50 1000
Length:  114188

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1524--1566
17
2.6
16
78
10
50
72
2
0
25
0.97
1533--1568
18
2.0
18
89
10
56
75
2
0
22
0.94
14694--14740
20
2.3
20
85
0
67
29
36
12
21
1.91
19718--19743
13
2.0
13
100
0
52
46
7
0
46
1.31
21413--21468
18
3.2
16
79
16
58
12
25
1
60
1.42
21470--21772
152
2.0
151
94
0
525
35
23
22
19
1.96
24507--24538
16
2.0
16
100
0
64
12
12
25
50
1.75
26043--26070
12
2.3
12
100
0
56
78
7
0
14
0.95
27001--27060
18
3.2
18
78
7
66
73
3
16
6
1.18
28735--28776
18
2.3
18
100
0
84
19
33
35
11
1.88
29112--29143
16
2.0
16
100
0
64
12
12
25
50
1.75
29330--29477
72
2.0
73
83
3
183
25
16
29
29
1.96
30816--30853
10
3.8
10
83
13
51
26
15
28
28
1.96
30818--30864
20
2.3
20
88
0
67
23
14
34
27
1.94
32109--32146
19
2.0
19
100
0
76
36
21
21
21
1.95
33956--33980
12
2.1
12
100
0
50
24
28
0
48
1.52
34948--35012
32
2.1
30
83
13
78
4
15
4
75
1.13
34993--35051
12
4.8
12
71
20
50
16
8
3
71
1.25
35005--35062
12
4.5
13
78
19
59
15
5
5
74
1.18
37395--37456
10
5.9
10
74
10
52
33
32
3
30
1.74
37395--37457
21
3.0
21
88
2
90
33
33
3
30
1.74
41704--41742
11
3.7
11
80
13
55
82
5
0
12
0.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41704--41743
12
3.7
12
75
25
52
82
5
0
12
0.82
41705--41743
20
2.0
20
100
0
78
82
5
0
12
0.83
41787--41838
14
3.6
14
94
5
86
61
5
11
21
1.50
41786--41839
16
3.5
16
85
7
76
62
5
11
20
1.47
57926--57984
12
5.2
12
91
8
97
71
8
0
20
1.12
57930--57981
11
4.7
11
92
7
88
76
7
0
15
0.99
57931--57980
21
2.3
21
96
3
91
76
8
0
16
1.02
58021--58060
16
2.6
16
96
4
73
62
5
12
20
1.48
64851--64875
12
2.1
12
100
0
50
24
28
0
48
1.52
67000--67066
11
5.7
11
74
17
55
71
4
7
16
1.25
67000--67090
38
2.5
37
82
7
105
73
5
8
12
1.23
67047--67125
28
2.9
27
78
16
81
69
5
16
8
1.32
71847--71881
11
3.2
11
83
0
52
17
8
2
71
1.23
71785--71866
30
2.8
28
78
14
85
8
15
4
70
1.29
71859--71905
13
3.5
13
77
11
58
17
4
4
74
1.14
73379--73416
10
3.8
10
83
13
51
26
15
28
28
1.96
73381--73437
20
2.8
20
83
2
69
26
14
33
26
1.94
79719--82574
954
3.0
958
97
1
5304
23
16
17
42
1.88
82615--82707
6
15.0
6
70
8
62
5
20
2
72
1.15
83658--83705
10
5.1
9
78
9
51
16
4
2
77
1.03
84814--84839
13
2.0
13
100
0
52
46
7
0
46
1.31
86496--86543
17
2.8
17
75
15
53
10
12
6
70
1.32
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
88712--88755
22
2.0
22
95
0
79
34
4
36
25
1.76
90176--90213
12
3.0
12
88
11
58
71
7
2
18
1.23
90176--90214
13
3.0
13
88
0
60
71
7
2
17
1.21
90254--90310
16
3.6
16
92
4
98
63
5
12
19
1.47
90257--90310
15
3.5
15
97
2
99
64
5
11
18
1.44
97255--97303
24
2.0
24
100
0
98
46
8
8
36
1.63
110085--110237
46
3.2
49
87
9
221
30
30
7
32
1.84

Tables:   1

The End!