Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold3176
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 112246
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.32
Found at i:1428 original size:21 final size:22
Alignment explanation
Indices: 1402--1453 Score: 79
Period size: 22 Copynumber: 2.4 Consensus size: 22
1392 GAATGAGAGT
*
1402 GAAAAAGAATT-GAAGAAGAAA
1 GAAAAAGAATTAGAAAAAGAAA
1423 GAAAAAGAATTAGAAAAAGAAA
1 GAAAAAGAATTAGAAAAAGAAA
*
1445 CAAAAAGAA
1 GAAAAAGAA
1454 GGAAAAGACG
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
21 11 0.39
22 17 0.61
ACGTcount: A:0.71, C:0.02, G:0.19, T:0.08
Consensus pattern (22 bp):
GAAAAAGAATTAGAAAAAGAAA
Found at i:1449 original size:10 final size:10
Alignment explanation
Indices: 1402--1459 Score: 53
Period size: 10 Copynumber: 5.5 Consensus size: 10
1392 GAATGAGAGT
*
1402 GAAAAAGAATT
1 GAAAAAGAA-A
*
1413 GAAGAAGAAA
1 GAAAAAGAAA
1423 GAAAAAGAATTA
1 GAAAAAGAA--A
1435 GAAAAAGAAA
1 GAAAAAGAAA
* *
1445 CAAAAAGAAG
1 GAAAAAGAAA
1455 GAAAA
1 GAAAA
1460 GACGTGGAAA
Statistics
Matches: 39, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
10 21 0.54
11 8 0.21
12 10 0.26
ACGTcount: A:0.71, C:0.02, G:0.21, T:0.07
Consensus pattern (10 bp):
GAAAAAGAAA
Found at i:18944 original size:19 final size:22
Alignment explanation
Indices: 18907--18946 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
18897 ATGATGATTA
18907 AAATAAAGAAAATATCCTCACC
1 AAATAAAGAAAATATCCTCACC
18929 AAATAAA-AAAA-A-CCTCAC
1 AAATAAAGAAAATATCCTCAC
18947 AATTCACATC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.33
20 1 0.06
21 4 0.22
22 7 0.39
ACGTcount: A:0.60, C:0.23, G:0.03, T:0.15
Consensus pattern (22 bp):
AAATAAAGAAAATATCCTCACC
Found at i:19382 original size:25 final size:23
Alignment explanation
Indices: 19335--19395 Score: 59
Period size: 23 Copynumber: 2.6 Consensus size: 23
19325 AGACCGTATG
*
19335 CAATTTTTTTTTCAAATTCTTTTTT
1 CAATTTTTTTTTTAAA--CTTTTTT
** *
19360 CAATTTTTTTTTTTGATTTTTTT
1 CAATTTTTTTTTTAAACTTTTTT
*
19383 CGATTTTTTTTTT
1 CAATTTTTTTTTT
19396 GAATCTACAA
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
23 18 0.58
25 13 0.42
ACGTcount: A:0.15, C:0.08, G:0.03, T:0.74
Consensus pattern (23 bp):
CAATTTTTTTTTTAAACTTTTTT
Found at i:19395 original size:13 final size:13
Alignment explanation
Indices: 19338--19382 Score: 54
Period size: 13 Copynumber: 3.5 Consensus size: 13
19328 CCGTATGCAA
*
19338 TTTTTTTTTCAAA
1 TTTTTTTTTCAAT
*
19351 TTCTTTTTTCAAT
1 TTTTTTTTTCAAT
**
19364 TTTTTTTTTTGAT
1 TTTTTTTTTCAAT
19377 TTTTTT
1 TTTTTT
19383 CGATTTTTTT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
13 27 1.00
ACGTcount: A:0.13, C:0.07, G:0.02, T:0.78
Consensus pattern (13 bp):
TTTTTTTTTCAAT
Found at i:24120 original size:20 final size:20
Alignment explanation
Indices: 24097--24143 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
24087 GGGTTAAGAT
*
24097 TGAGCTGAATTGAGCTTGAA
1 TGAGCTGAATTGAGCTCGAA
* * *
24117 TGAGTTGACTTGAGCTCGAG
1 TGAGCTGAATTGAGCTCGAA
24137 TGAGCTG
1 TGAGCTG
24144 GAAACGAGCT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.23, C:0.13, G:0.34, T:0.30
Consensus pattern (20 bp):
TGAGCTGAATTGAGCTCGAA
Found at i:25789 original size:15 final size:16
Alignment explanation
Indices: 25765--25797 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
25755 CTCGATTGCT
25765 TTCTCCTTTTC-ACTC
1 TTCTCCTTTTCAACTC
*
25780 TTCTCTTTTTCAACTC
1 TTCTCCTTTTCAACTC
25796 TT
1 TT
25798 TTCTAACTCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 10 0.62
16 6 0.38
ACGTcount: A:0.09, C:0.33, G:0.00, T:0.58
Consensus pattern (16 bp):
TTCTCCTTTTCAACTC
Found at i:28558 original size:20 final size:20
Alignment explanation
Indices: 28535--28581 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
28525 GGGTTAAGAT
*
28535 TGAGCTGAATTGAGCTTGAA
1 TGAGCTGAATTGAGCTCGAA
* * *
28555 TGAGTTGACTTGAGCTCGAG
1 TGAGCTGAATTGAGCTCGAA
28575 TGAGCTG
1 TGAGCTG
28582 GAAACGAGCT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.23, C:0.13, G:0.34, T:0.30
Consensus pattern (20 bp):
TGAGCTGAATTGAGCTCGAA
Found at i:30971 original size:14 final size:14
Alignment explanation
Indices: 30948--30978 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
30938 GACATGATTT
*
30948 AATTACAAAAAAAA
1 AATTAAAAAAAAAA
30962 AATTAAAAAAAAAA
1 AATTAAAAAAAAAA
30976 AAT
1 AAT
30979 AAATACCTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.81, C:0.03, G:0.00, T:0.16
Consensus pattern (14 bp):
AATTAAAAAAAAAA
Found at i:30972 original size:13 final size:13
Alignment explanation
Indices: 30948--30981 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
30938 GACATGATTT
30948 AATTACAAAAAAAA
1 AATTA-AAAAAAAA
30962 AATTAAAAAAAAA
1 AATTAAAAAAAAA
*
30975 AAATAAA
1 AATTAAA
30982 TACCTTACCA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.82, C:0.03, G:0.00, T:0.15
Consensus pattern (13 bp):
AATTAAAAAAAAA
Found at i:31334 original size:15 final size:16
Alignment explanation
Indices: 31296--31338 Score: 54
Period size: 15 Copynumber: 2.8 Consensus size: 16
31286 CACAAGACTT
*
31296 TTCACTTTTTTTTTTC
1 TTCACTTTTTTTTTGC
*
31312 TTGA-TTTTTTTTTGC
1 TTCACTTTTTTTTTGC
31327 -TCACTTTTTTTT
1 TTCACTTTTTTTT
31339 CTTTTCTTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
14 2 0.09
15 18 0.78
16 3 0.13
ACGTcount: A:0.07, C:0.14, G:0.05, T:0.74
Consensus pattern (16 bp):
TTCACTTTTTTTTTGC
Found at i:32894 original size:20 final size:20
Alignment explanation
Indices: 32871--32917 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
32861 GGGTTAAGAT
*
32871 TGAGCTGAATTGAGCTTGAA
1 TGAGCTGAATTGAGCTCGAA
* * *
32891 TGAGTTGACTTGAGCTCGAG
1 TGAGCTGAATTGAGCTCGAA
32911 TGAGCTG
1 TGAGCTG
32918 GAACGAGCTA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.23, C:0.13, G:0.34, T:0.30
Consensus pattern (20 bp):
TGAGCTGAATTGAGCTCGAA
Found at i:35222 original size:17 final size:18
Alignment explanation
Indices: 35200--35240 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 18
35190 CATTTCTTTT
35200 TCTTTTGAATCACTC-TC
1 TCTTTTGAATCACTCATC
**
35217 TCTTTTTTATCACTCATC
1 TCTTTTGAATCACTCATC
35235 T-TTTTG
1 TCTTTTG
35241 TTTTTCTTCT
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
17 17 0.85
18 3 0.15
ACGTcount: A:0.15, C:0.24, G:0.05, T:0.56
Consensus pattern (18 bp):
TCTTTTGAATCACTCATC
Found at i:37484 original size:12 final size:11
Alignment explanation
Indices: 37466--37522 Score: 62
Period size: 12 Copynumber: 5.0 Consensus size: 11
37456 AGACCGTATG
37466 CAATTTTTTTT
1 CAATTTTTTTT
37477 CAAATTTTTTTTT
1 C-AA-TTTTTTTT
37490 CAATTTTTTTCT
1 CAATTTTTTT-T
*
37502 CGATTTTTTTT
1 CAATTTTTTTT
*
37513 -GATTTTTTTT
1 CAATTTTTTTT
37523 GAATCTACAA
Statistics
Matches: 42, Mismatches: 1, Indels: 7
0.84 0.02 0.14
Matches are distributed among these distances:
10 10 0.24
11 9 0.21
12 14 0.33
13 9 0.21
ACGTcount: A:0.16, C:0.09, G:0.04, T:0.72
Consensus pattern (11 bp):
CAATTTTTTTT
Found at i:37498 original size:24 final size:24
Alignment explanation
Indices: 37466--37512 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
37456 AGACCGTATG
37466 CAATTTTTTT-TCAAATTTTTTTTT
1 CAATTTTTTTCTC-AATTTTTTTTT
*
37490 CAATTTTTTTCTCGATTTTTTTT
1 CAATTTTTTTCTCAATTTTTTTT
37513 GATTTTTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 19 0.90
25 2 0.10
ACGTcount: A:0.17, C:0.11, G:0.02, T:0.70
Consensus pattern (24 bp):
CAATTTTTTTCTCAATTTTTTTTT
Found at i:40950 original size:13 final size:13
Alignment explanation
Indices: 40932--40957 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
40922 ACCTGAAAGC
40932 AATTTAATTCATA
1 AATTTAATTCATA
40945 AATTTAATTCATA
1 AATTTAATTCATA
40958 TTAGGACACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.08, G:0.00, T:0.46
Consensus pattern (13 bp):
AATTTAATTCATA
Found at i:41371 original size:20 final size:21
Alignment explanation
Indices: 41346--41384 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
41336 TCAAACAAGC
41346 AAATGAGCTCAA-TGAGCTGG
1 AAATGAGCTCAATTGAGCTGG
*
41366 AAATGAGCTGAATTGAGCT
1 AAATGAGCTCAATTGAGCT
41385 CAACGAGCTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.36, C:0.13, G:0.28, T:0.23
Consensus pattern (21 bp):
AAATGAGCTCAATTGAGCTGG
Found at i:46204 original size:21 final size:21
Alignment explanation
Indices: 46154--46218 Score: 85
Period size: 21 Copynumber: 3.0 Consensus size: 21
46144 GTCCTTTTGA
*
46154 ACCATTACCAATTCGTACCAAAT
1 ACCA-TACCATTTCGTACC-AAT
*
46177 ACCATACCATTTCATACCAAT
1 ACCATACCATTTCGTACCAAT
*
46198 TCCATACCATTTCGTACCAAT
1 ACCATACCATTTCGTACCAAT
46219 CCCAAATACC
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
21 22 0.58
22 12 0.32
23 4 0.11
ACGTcount: A:0.35, C:0.32, G:0.03, T:0.29
Consensus pattern (21 bp):
ACCATACCATTTCGTACCAAT
Found at i:55977 original size:18 final size:17
Alignment explanation
Indices: 55954--56005 Score: 54
Period size: 18 Copynumber: 3.0 Consensus size: 17
55944 AAACCAGTAA
55954 AAAAATTCAAAAAAATT
1 AAAAATTCAAAAAAATT
*
55971 GAAAAATACAAAATCAAA-T
1 -AAAAATTCAAAA--AAATT
55990 AAAAATT-AAAAAAATT
1 AAAAATTCAAAAAAATT
56006 TCAGTGGGTT
Statistics
Matches: 29, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
15 3 0.10
16 1 0.03
17 4 0.14
18 17 0.59
19 1 0.03
20 3 0.10
ACGTcount: A:0.71, C:0.06, G:0.02, T:0.21
Consensus pattern (17 bp):
AAAAATTCAAAAAAATT
Found at i:68941 original size:13 final size:13
Alignment explanation
Indices: 68923--68971 Score: 71
Period size: 14 Copynumber: 3.6 Consensus size: 13
68913 TCAAGTTGTG
68923 AAAAAAAATTTGAA
1 AAAAAAAATTTG-A
68937 AAAAAAAATTCTGA
1 AAAAAAAATT-TGA
*
68951 AAAAAAAAATTGA
1 AAAAAAAATTTGA
68964 AAAAAAAA
1 AAAAAAAA
68972 GAGAGCTAGT
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
13 11 0.33
14 20 0.61
15 2 0.06
ACGTcount: A:0.76, C:0.02, G:0.06, T:0.16
Consensus pattern (13 bp):
AAAAAAAATTTGA
Found at i:68943 original size:15 final size:14
Alignment explanation
Indices: 68923--68971 Score: 82
Period size: 15 Copynumber: 3.5 Consensus size: 14
68913 TCAAGTTGTG
68923 AAAAAAAATTTGAA
1 AAAAAAAATTTGAA
68937 AAAAAAAATTCTGAA
1 AAAAAAAATT-TGAA
68952 AAAAAAAA-TTGAA
1 AAAAAAAATTTGAA
68965 AAAAAAA
1 AAAAAAA
68972 GAGAGCTAGT
Statistics
Matches: 34, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
13 11 0.32
14 11 0.32
15 12 0.35
ACGTcount: A:0.76, C:0.02, G:0.06, T:0.16
Consensus pattern (14 bp):
AAAAAAAATTTGAA
Found at i:86827 original size:12 final size:11
Alignment explanation
Indices: 86780--86853 Score: 60
Period size: 11 Copynumber: 6.7 Consensus size: 11
86770 GTAATTGAAC
*
86780 AAAAAAAATCA
1 AAAAAAAATGA
86791 AAAAAAAA-GA
1 AAAAAAAATGA
** * *
86801 AGAGGAAATTCA
1 A-AAAAAAATGA
86813 AAAAAAAATGA
1 AAAAAAAATGA
**
86824 AAAAAATTTGA
1 AAAAAAAATGA
*
86835 AAAAAAATTGA
1 AAAAAAAATGA
86846 AAAAAAAA
1 AAAAAAAA
86854 ATTCGAAGTA
Statistics
Matches: 48, Mismatches: 13, Indels: 4
0.74 0.20 0.06
Matches are distributed among these distances:
10 2 0.04
11 44 0.92
12 2 0.04
ACGTcount: A:0.76, C:0.03, G:0.09, T:0.12
Consensus pattern (11 bp):
AAAAAAAATGA
Found at i:92371 original size:4 final size:4
Alignment explanation
Indices: 92362--92389 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
92352 AAGTTTTATT
92362 TTTA TTTA TTTA TTTA TTTA TTTA TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA
92390 CTTAGTTTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (4 bp):
TTTA
Found at i:95021 original size:19 final size:18
Alignment explanation
Indices: 94985--95024 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
94975 TTTCCACTCG
*
94985 TTTCTTTTTCAACTTCTC
1 TTTCTTTTTCAACATCTC
*
95003 TTTCTTTTTCCACAATCTC
1 TTTCTTTTTCAAC-ATCTC
95022 TTT
1 TTT
95025 GTTTGTTGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 12 0.63
19 7 0.37
ACGTcount: A:0.12, C:0.28, G:0.00, T:0.60
Consensus pattern (18 bp):
TTTCTTTTTCAACATCTC
Found at i:102939 original size:45 final size:42
Alignment explanation
Indices: 102875--102963 Score: 126
Period size: 45 Copynumber: 2.0 Consensus size: 42
102865 CATAGAGTGC
*
102875 GTTCATCATATACCAGGTTCTTATCATCATTGATAGTGGGTCGAG
1 GTTCATCATATACCAGGTTCCTAT-ATC-TTGATA-TGGGTCGAG
102920 GTTCATCATA-ACCAAGGTTCCTATATCTTGATATGGGTCGAG
1 GTTCATCATATACC-AGGTTCCTATATCTTGATATGGGTCGAG
102962 GT
1 GT
102964 CTTTCTTTGT
Statistics
Matches: 42, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
42 11 0.26
43 6 0.14
44 6 0.14
45 19 0.45
ACGTcount: A:0.25, C:0.18, G:0.22, T:0.35
Consensus pattern (42 bp):
GTTCATCATATACCAGGTTCCTATATCTTGATATGGGTCGAG
Found at i:103294 original size:9 final size:10
Alignment explanation
Indices: 103270--103307 Score: 58
Period size: 10 Copynumber: 3.7 Consensus size: 10
103260 TAGTTTCTCG
*
103270 AAAAAACTTC
1 AAAAAAATTC
103280 AAAAAAAATTC
1 -AAAAAAATTC
103291 AAAAAAATTC
1 AAAAAAATTC
103301 AAAAAAA
1 AAAAAAA
103308 ATTAGTTTCC
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
10 17 0.65
11 9 0.35
ACGTcount: A:0.74, C:0.11, G:0.00, T:0.16
Consensus pattern (10 bp):
AAAAAAATTC
Found at i:103296 original size:21 final size:21
Alignment explanation
Indices: 103270--103310 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
103260 TAGTTTCTCG
*
103270 AAAAAACTTCAAAAAAAATTC
1 AAAAAAATTCAAAAAAAATTC
103291 AAAAAAATTCAAAAAAAATT
1 AAAAAAATTCAAAAAAAATT
103311 AGTTTCCATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.71, C:0.10, G:0.00, T:0.20
Consensus pattern (21 bp):
AAAAAAATTCAAAAAAAATTC
Found at i:103308 original size:11 final size:11
Alignment explanation
Indices: 103270--103310 Score: 66
Period size: 11 Copynumber: 3.8 Consensus size: 11
103260 TAGTTTCTCG
*
103270 AAAAAACTTCA
1 AAAAAAATTCA
103281 AAAAAAATTC-
1 AAAAAAATTCA
103291 AAAAAAATTCA
1 AAAAAAATTCA
103302 AAAAAAATT
1 AAAAAAATT
103311 AGTTTCCATT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
10 10 0.36
11 18 0.64
ACGTcount: A:0.71, C:0.10, G:0.00, T:0.20
Consensus pattern (11 bp):
AAAAAAATTCA
Found at i:103368 original size:14 final size:13
Alignment explanation
Indices: 103349--103383 Score: 61
Period size: 13 Copynumber: 2.6 Consensus size: 13
103339 TCAAGTTGAA
103349 AAAAAAAATTCGTG
1 AAAAAAAATT-GTG
103363 AAAAAAAATTGTG
1 AAAAAAAATTGTG
103376 AAAAAAAA
1 AAAAAAAA
103384 AGAAGACTAG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 11 0.52
14 10 0.48
ACGTcount: A:0.69, C:0.03, G:0.11, T:0.17
Consensus pattern (13 bp):
AAAAAAAATTGTG
Found at i:103384 original size:14 final size:15
Alignment explanation
Indices: 103348--103384 Score: 60
Period size: 14 Copynumber: 2.6 Consensus size: 15
103338 ATCAAGTTGA
103348 AAAAAAAAATTCGTG
1 AAAAAAAAATTCGTG
103363 -AAAAAAAATT-GTG
1 AAAAAAAAATTCGTG
103376 AAAAAAAAA
1 AAAAAAAAA
103385 GAAGACTAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 3 0.14
14 18 0.86
ACGTcount: A:0.70, C:0.03, G:0.11, T:0.16
Consensus pattern (15 bp):
AAAAAAAAATTCGTG
Done.