Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1271
Parameters: 2 7 7 80 10 50 1000
Length:  84794

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2515--2541
14
1.9
14
100
0
54
81
0
18
0
0.69
13446--13480
17
2.1
17
88
0
52
48
28
5
17
1.69
21423--21485
10
6.1
11
72
18
55
36
4
0
58
1.19
23565--23617
21
2.5
21
90
0
79
30
35
9
24
1.87
24732--24777
22
2.1
21
84
4
56
50
2
10
36
1.50
25054--25103
24
2.1
24
81
7
57
62
2
8
28
1.35
26480--26534
28
1.9
29
92
3
94
43
45
0
10
1.39
26531--26572
21
2.0
21
100
0
84
61
4
0
33
1.17
26620--26677
9
6.4
9
83
0
71
27
8
22
41
1.83
26620--26677
27
2.1
27
87
0
80
27
8
22
41
1.83
28385--28434
11
4.5
11
76
0
55
66
12
4
18
1.39
28385--28434
22
2.3
22
89
0
73
66
12
4
18
1.39
30430--30466
19
1.9
19
100
0
74
37
13
5
43
1.67
33950--34071
56
2.2
57
81
10
151
35
13
15
35
1.87
37848--37872
12
2.1
12
100
0
50
24
16
28
32
1.96
40177--40217
18
2.3
18
95
0
73
46
2
14
36
1.58
40579--40690
54
2.1
54
94
0
197
38
6
16
39
1.73
50660--50770
35
3.2
34
85
2
107
22
30
27
18
1.98
50678--50782
35
3.0
35
92
0
174
22
28
31
17
1.96
53736--53769
4
8.5
4
93
0
59
47
23
2
26
1.66
60356--60495
35
4.0
35
97
0
253
16
32
29
21
1.95
64094--64127
15
2.3
15
94
0
59
52
5
23
17
1.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
65416--65499
40
2.1
40
100
0
168
11
11
38
38
1.79
66375--66415
21
2.0
21
90
9
66
12
17
21
48
1.79
68478--68511
14
2.4
14
90
0
50
47
2
0
50
1.16
79001--79039
20
2.0
20
85
14
55
61
0
2
35
1.10
80062--80715
218
3.0
218
97
0
1258
28
10
19
41
1.85
82124--82207
31
2.7
31
88
0
132
38
14
9
38
1.78
82388--82486
31
3.2
31
82
0
117
22
24
25
28
1.99

Tables:   1

The End!