Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1998
Parameters: 2 7 7 80 10 50 1000
Length:  63062

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5190--5437
50
4.8
50
84
5
284
20
29
23
26
1.99
5189--5437
100
2.4
103
86
7
337
20
29
23
26
1.99
5532--5563
13
2.5
13
94
0
55
56
12
0
31
1.37
5775--5831
30
1.9
29
89
3
87
31
24
3
40
1.72
8147--8181
9
3.9
9
84
0
52
48
14
8
28
1.73
8397--8456
30
2.0
31
83
9
79
20
36
0
43
1.52
9519--9581
20
3.3
19
74
19
60
58
1
1
38
1.17
9841--9915
33
2.3
34
76
6
82
40
4
2
53
1.34
10471--10510
16
2.4
16
87
8
53
82
0
12
5
0.82
19148--19182
3
11.7
3
100
0
70
65
0
0
34
0.93
24569--24595
9
3.0
9
100
0
54
44
0
11
44
1.39
24667--24711
3
15.0
3
100
0
90
66
0
0
33
0.92
25037--25088
25
2.1
25
96
0
95
55
7
13
23
1.63
26711--26812
50
2.2
47
81
10
111
30
24
12
32
1.92
26615--26880
138
1.9
138
83
4
349
29
20
17
32
1.95
27926--27997
28
2.6
28
88
0
99
33
12
25
29
1.92
28651--28910
23
11.1
23
77
5
243
25
14
17
42
1.87
28651--28969
141
2.3
142
91
2
509
26
13
17
42
1.86
28651--28982
71
4.7
71
85
2
445
27
13
18
41
1.87
38429--38496
34
2.0
34
100
0
136
23
23
17
35
1.95
40991--41087
48
2.0
48
95
0
176
36
19
17
26
1.94
41358--41384
9
3.0
9
100
0
54
44
0
11
44
1.39
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52120--52187
35
2.0
33
94
5
118
23
22
19
35
1.96
54661--54757
48
2.0
48
95
0
176
36
19
17
26
1.94
55024--55050
9
3.0
9
100
0
54
44
0
11
44
1.39
57547--57593
25
1.9
24
91
4
76
51
10
0
38
1.37
59494--59527
17
2.0
17
94
0
59
32
0
32
35
1.58
59831--59874
21
2.0
22
83
12
56
47
9
13
29
1.74
60312--60341
14
2.1
15
93
6
53
33
20
6
40
1.78
61814--61842
15
1.9
15
100
0
58
41
10
20
27
1.85

Tables:   1

The End!