Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Scaffold2805

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 39673
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.31


Found at i:1862 original size:14 final size:14

Alignment explanation


    Indices: 1843--1873  Score: 53
    Period size: 14  Copynumber: 2.2  Consensus size: 14

       1833 AAGTCTTGGT

                          
       1843 ATCCTGCCCAAGCC
          1 ATCCTGCCCAAGCC

                    *     
       1857 ATCCTGCCGAAGCC
          1 ATCCTGCCCAAGCC

               
       1871 ATC
          1 ATC

       1874 TCTAATGAGG


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  14   16  1.00

ACGTcount: A:0.23, C:0.45, G:0.16, T:0.16


Consensus pattern (14 bp):   
ATCCTGCCCAAGCC

Found at i:4252 original size:14 final size:14

Alignment explanation


    Indices: 4233--4263  Score: 53
    Period size: 14  Copynumber: 2.2  Consensus size: 14

       4223 AAGTCTTGGT

                          
       4233 ATCCTGCCCAAGCC
          1 ATCCTGCCCAAGCC

                    *     
       4247 ATCCTGCCGAAGCC
          1 ATCCTGCCCAAGCC

               
       4261 ATC
          1 ATC

       4264 TCTAATGAGG


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  14   16  1.00

ACGTcount: A:0.23, C:0.45, G:0.16, T:0.16


Consensus pattern (14 bp):   
ATCCTGCCCAAGCC

Found at i:24810 original size:14 final size:14

Alignment explanation


    Indices: 24791--24821  Score: 62
    Period size: 14  Copynumber: 2.2  Consensus size: 14

      24781 AAGTCTTGGT

                          
      24791 ATCCTGCCCAAGCC
          1 ATCCTGCCCAAGCC

                          
      24805 ATCCTGCCCAAGCC
          1 ATCCTGCCCAAGCC

               
      24819 ATC
          1 ATC

      24822 TCTAATGAGG


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   17  1.00

ACGTcount: A:0.23, C:0.48, G:0.13, T:0.16


Consensus pattern (14 bp):   
ATCCTGCCCAAGCC
Done.