genome.fa.s743.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold3507_ERROPOS4234955
Parameters: 2 7 7 80 10 50 1000
Length:  199999

Tables:   1   

This is table  1  of  1  ( 87 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
315--385	21	3.4	21	66	23	60	47	11	11	29	1.74
1148--1203	10	6.0	10	72	16	57	46	1	7	44	1.41
1161--1238	32	2.6	29	82	13	95	52	0	6	41	1.27
1295--1322	3	9.3	3	100	0	56	67	0	0	32	0.91
2293--2374	34	2.4	34	89	0	119	20	17	50	12	1.78
2634--2971	82	4.1	82	88	0	469	26	13	14	45	1.82
3325--3670	82	4.2	82	84	1	417	28	12	12	47	1.77
13386--13428	20	2.1	21	91	4	70	39	9	6	44	1.64
14280--14316	20	1.9	19	89	10	58	29	27	10	32	1.90
14712--14752	16	2.6	16	100	0	82	14	43	24	17	1.86
14852--14895	17	2.6	17	100	0	88	25	43	22	9	1.82
17194--17568	82	4.6	81	85	4	448	26	12	13	47	1.78
17195--17568	163	2.3	164	84	3	468	26	12	13	47	1.78
27408--27674	40	6.7	40	95	0	471	29	20	28	22	1.98
36969--37308	82	4.1	82	86	0	439	26	12	14	46	1.79
46826--46876	18	2.9	17	82	5	57	31	27	7	33	1.85
47088--47218	27	4.7	27	74	8	111	30	27	19	22	1.98
47141--47217	15	5.4	14	75	9	66	33	29	16	19	1.94
48970--48994	12	2.1	12	100	0	50	44	16	8	32	1.76
50387--50440	15	3.5	15	75	5	54	27	27	22	22	1.99
50441--50507	15	4.5	15	79	7	64	25	35	14	23	1.94
50467--50506	14	2.7	14	88	7	53	22	30	20	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50540--50602	30	2.1	30	84	0	81	28	34	12	23	1.92
50455--50579	59	2.1	58	80	5	135	29	33	14	22	1.93
55161--55345	79	2.3	82	82	7	220	24	27	23	24	2.00
55142--55345	40	5.1	40	80	8	220	24	27	23	25	2.00
58970--59047	37	2.1	36	88	2	111	25	32	17	24	1.97
59166--59835	47	14.1	47	92	1	1079	29	29	9	32	1.88
62385--62500	39	2.9	40	84	2	162	25	29	22	23	1.99
62921--62999	29	2.7	29	84	5	97	26	32	16	24	1.96
62981--63083	43	2.4	43	98	0	197	25	35	16	22	1.94
64948--65026	37	2.1	37	90	0	122	25	31	18	24	1.98
65189--65267	37	2.1	37	90	0	122	25	31	18	24	1.98
64888--65369	241	2.0	241	99	0	955	29	22	19	28	1.98
65386--65724	47	7.1	47	89	3	489	28	30	9	32	1.88
65386--65721	96	3.5	96	91	1	514	28	30	9	31	1.88
65388--65721	143	2.3	144	91	2	530	28	30	9	31	1.88
69800--69854	28	2.0	28	96	0	101	32	5	18	43	1.73
73078--73183	40	2.7	40	85	5	126	29	16	23	31	1.96
74855--75026	67	2.6	66	81	7	170	31	16	29	22	1.96
74879--75062	67	2.8	64	78	8	194	29	16	30	23	1.96
81510--81563	27	2.0	27	100	0	108	33	7	11	48	1.67
82221--82299	37	2.1	37	90	0	122	25	31	18	24	1.98
82418--82734	47	6.7	47	94	1	544	29	30	8	32	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
84425--84449	13	1.9	13	100	0	50	36	16	16	32	1.90
85293--85460	85	2.0	85	100	0	336	27	11	26	34	1.91
85414--85538	63	2.0	63	95	0	223	27	10	27	35	1.89
86078--86194	38	3.1	38	89	1	171	17	22	27	33	1.96
88257--88432	46	3.8	46	80	4	201	28	29	21	21	1.98
88265--88435	93	1.8	93	91	0	279	27	29	21	21	1.98
89919--90190	40	6.8	40	85	2	341	25	27	21	24	1.99
89899--90186	120	2.4	120	91	0	461	26	28	21	23	1.99
92062--92103	18	2.3	18	95	0	75	38	26	4	30	1.77
95455--95497	20	2.2	20	95	0	77	32	18	6	41	1.77
100839--100884	23	2.0	23	83	8	58	60	10	0	28	1.30
106291--106338	21	2.5	18	81	18	53	16	27	0	56	1.41
109421--109478	23	2.5	23	91	0	89	41	22	18	17	1.90
109463--109526	27	2.4	27	81	5	76	37	23	21	17	1.94
110991--111067	27	2.9	27	80	0	82	28	16	11	42	1.84
115884--115975	44	2.1	44	83	2	114	31	18	23	26	1.97
121363--121644	49	5.7	49	83	5	368	29	26	18	24	1.98
121363--121645	151	1.9	148	87	3	415	29	26	18	25	1.98
127196--127379	40	4.6	40	82	6	196	23	20	27	28	1.99
127196--127376	80	2.3	81	83	9	221	23	20	27	27	1.99
127277--127426	40	3.8	38	80	10	131	25	22	28	24	1.99
135541--135618	36	2.1	37	88	2	113	25	30	19	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
135737--136388	46	14.1	47	88	7	980	29	28	8	32	1.87
135750--136386	47	13.8	46	88	7	758	29	29	9	32	1.88
135750--136389	94	7.0	90	89	7	875	29	29	9	32	1.88
138712--138761	24	2.0	26	81	11	61	30	30	8	32	1.86
138927--139038	39	2.9	39	84	6	138	25	30	21	22	1.99
139042--139152	40	2.8	40	79	14	115	23	30	22	23	1.99
139513--139615	43	2.4	43	98	0	197	27	35	14	22	1.93
141358--141436	37	2.1	37	90	0	122	25	31	18	24	1.98
141555--142172	47	13.1	47	90	3	940	28	29	9	32	1.89
149186--149370	79	2.3	82	83	7	229	24	27	22	24	2.00
149167--149370	40	5.1	40	81	8	229	24	27	22	25	2.00
157289--157399	30	3.7	30	80	4	80	30	21	23	24	1.99
164770--164804	15	2.3	15	100	0	70	31	5	42	20	1.75
191233--191258	11	2.4	11	100	0	52	34	19	0	46	1.50
193770--193820	10	4.9	11	84	15	65	25	0	0	74	0.82
193771--193820	5	9.8	5	77	18	50	24	0	0	76	0.80
196702--196733	9	3.4	9	91	8	55	65	0	0	34	0.93
196704--196732	10	3.0	10	95	5	51	62	0	0	37	0.96
197149--197309	68	2.3	70	82	9	179	40	3	4	50	1.42
197265--197314	23	2.2	23	88	0	73	48	2	2	48	1.24
197420--197466	26	2.0	25	84	16	64	42	8	12	36	1.74

Tables:   1

The End!