genome.fa.s745.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2558
Parameters: 2 7 7 80 10 50 1000
Length:  129476

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5541--5576	4	8.8	4	87	6	54	22	0	2	75	0.94
7466--7517	24	2.2	24	89	0	77	55	9	1	32	1.43
9432--9483	24	2.2	24	89	0	77	55	9	1	32	1.43
10266--10301	14	2.5	14	90	4	54	47	5	16	30	1.70
11010--11039	14	2.1	14	100	0	60	36	13	26	23	1.92
13354--13405	18	2.9	18	70	0	59	40	3	42	13	1.62
21516--21701	50	3.6	50	78	4	174	23	27	20	27	1.99
23836--23979	72	2.0	72	94	0	252	38	5	15	40	1.71
27361--27507	40	3.7	40	83	5	120	25	27	21	25	2.00
27407--27587	80	2.3	80	83	9	219	27	27	20	23	1.99
27404--27587	40	4.6	40	81	7	196	28	27	20	23	1.99
35188--35334	40	3.7	40	83	5	120	25	27	21	25	2.00
35231--35359	40	3.3	39	84	4	170	28	27	20	24	1.99
35234--35412	78	2.3	80	82	9	208	27	27	21	24	1.99
46752--46935	40	4.6	40	81	6	187	23	21	27	27	1.99
46832--46982	40	3.8	39	80	6	117	24	22	28	24	1.99
55615--56125	253	2.0	253	100	0	1022	35	7	16	40	1.77
64821--64882	32	1.9	32	87	6	90	24	19	25	30	1.98
65229--65265	17	2.0	19	85	15	51	27	10	16	45	1.80
69626--69776	28	5.4	28	93	1	232	34	27	11	27	1.91
77647--77800	28	5.5	28	96	0	274	34	25	11	28	1.90
77648--77825	56	3.2	56	91	1	277	34	25	11	28	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
86971--86996	10	2.6	10	100	0	52	15	30	0	53	1.42
95194--95245	23	2.4	22	81	15	63	67	1	21	9	1.29
98364--98765	27	14.9	27	84	0	464	41	21	18	18	1.90
99116--99318	28	7.3	28	88	0	264	24	26	23	26	2.00
100060--100135	9	8.4	9	82	5	100	40	19	13	26	1.88
100180--100223	20	2.2	20	84	8	54	25	0	6	68	1.14
100237--100280	18	2.4	18	88	0	61	13	2	43	40	1.57
100739--100886	75	2.0	75	86	5	210	45	9	13	31	1.76
111032--112397	683	2.0	683	89	2	2091	33	16	21	27	1.95
119856--119897	19	2.2	19	83	8	50	52	11	19	16	1.74
120230--120262	17	2.0	17	88	5	50	45	0	0	54	0.99
120283--120361	37	2.1	37	84	9	99	40	3	3	51	1.38
120240--120374	68	2.0	69	88	1	200	40	3	3	52	1.37
121253--121301	13	3.8	13	78	21	50	12	8	2	77	1.07
121253--121301	19	2.6	19	83	6	64	12	8	2	77	1.07
121565--121594	7	4.3	7	95	0	51	13	0	30	56	1.37
121555--121594	14	2.9	14	88	0	53	15	0	30	55	1.41
123166--123349	40	4.6	40	82	6	196	23	20	27	28	1.99
123166--123346	80	2.3	81	83	9	221	23	20	27	27	1.99
123234--123396	40	4.1	39	82	7	141	26	20	26	26	1.99

Tables:   1

The End!