genome.fa.s746.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold410
Parameters: 2 7 7 80 10 50 1000
Length:  78173

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
554--584	14	2.2	14	100	0	62	32	45	16	6	1.72
5666--5697	14	2.3	14	100	0	64	31	46	15	6	1.71
9518--9809	42	6.9	42	79	9	301	18	28	33	19	1.95
10018--10096	24	3.3	24	85	5	106	6	37	35	20	1.78
10101--11248	85	13.5	86	83	3	1102	16	31	34	17	1.92
10114--11248	256	4.4	252	84	5	1213	16	31	34	17	1.92
10101--11248	43	26.9	43	79	5	1102	16	31	34	17	1.92
19175--19466	42	6.9	42	80	9	319	17	28	34	19	1.95
19675--19753	24	3.3	24	85	5	106	6	37	35	20	1.78
19771--20915	43	27.2	43	78	8	841	15	31	34	18	1.92
19758--20770	43	23.9	43	78	5	1003	16	32	33	17	1.93
19758--20915	85	13.7	84	79	7	690	15	31	34	18	1.92
19771--20801	256	4.1	253	83	5	1051	16	32	33	17	1.93
19829--20564	299	2.5	299	92	1	1201	16	32	32	17	1.93
20698--20777	35	2.3	34	89	6	124	7	35	37	20	1.81
20709--20896	78	2.4	77	77	14	211	11	31	38	18	1.87
20744--20915	42	4.2	43	78	12	207	12	28	40	18	1.87
20765--20837	36	2.0	37	89	2	112	9	27	43	19	1.81
28472--28565	48	2.0	48	87	8	138	19	12	27	40	1.88
30390--31619	614	2.0	614	100	0	2460	25	20	23	30	1.98
33855--33948	48	2.0	48	87	8	138	19	12	27	40	1.88
34820--35111	42	6.9	42	80	9	310	17	28	33	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35320--35398	24	3.3	24	85	5	106	6	37	35	20	1.78
35403--36413	43	23.9	43	78	6	994	16	32	33	17	1.93
35403--36413	85	12.0	86	82	3	994	16	32	33	17	1.93
35416--36442	256	4.1	253	84	5	1054	16	32	33	17	1.93
35474--36413	299	3.2	299	87	4	1209	16	32	33	17	1.93
36342--36420	34	2.3	34	93	2	131	7	35	37	18	1.80
36457--36549	42	2.2	44	90	3	145	12	27	39	19	1.88
44452--44743	42	6.9	42	80	9	319	17	28	34	19	1.95
44952--45030	24	3.3	24	85	5	106	6	37	35	20	1.78
45035--46045	43	23.9	43	78	6	994	16	32	33	17	1.93
45035--46045	85	12.0	86	82	3	994	16	32	33	17	1.93
45048--46075	256	4.1	253	84	5	1056	16	32	33	17	1.93
45106--46045	299	3.2	299	87	4	1209	16	32	33	17	1.93
45974--46052	34	2.3	34	93	2	131	7	35	37	18	1.80
46051--46099	24	2.0	24	92	0	80	10	22	48	18	1.77
46086--46178	42	2.2	44	90	3	145	12	27	39	19	1.88
54077--54368	42	6.9	42	80	9	310	17	28	33	19	1.95
54577--54655	24	3.3	24	85	5	106	6	37	35	20	1.78
54660--55806	85	13.5	86	82	3	1091	16	31	34	17	1.92
54673--55806	256	4.4	252	83	5	1202	16	31	34	17	1.92
54660--55806	43	26.9	43	79	5	1091	16	31	34	17	1.92
60468--60499	14	2.3	14	100	0	64	31	46	15	6	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65593--65624	14	2.3	14	100	0	64	31	46	15	6	1.71
69463--69754	42	6.9	42	78	9	292	18	28	33	19	1.95
69963--70041	24	3.3	24	85	5	106	6	37	35	20	1.78
70059--71197	43	27.2	43	77	8	828	15	31	34	17	1.92
70046--71057	43	23.9	43	78	6	1003	16	32	33	17	1.93
70046--71197	85	13.7	84	79	7	743	15	31	34	18	1.92
70059--71088	256	4.1	254	84	5	1062	16	31	33	17	1.93
70117--70852	299	2.5	299	92	1	1201	16	32	33	18	1.93
70986--71064	34	2.3	34	93	2	131	7	35	37	18	1.80
70945--71181	77	3.1	76	79	7	257	12	31	37	18	1.88

Tables:   1

The End!