Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1422
Parameters: 2 7 7 80 10 50 1000
Length:  54696

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
287--374
31
3.0
30
79
12
85
47
2
17
32
1.60
303--394
29
3.1
29
82
6
87
46
3
19
30
1.66
679--1093
54
7.9
52
82
12
478
38
18
15
27
1.91
1061--2380
71
19.5
69
87
11
1790
34
18
16
30
1.93
1061--2557
399
3.7
407
87
10
1971
34
18
16
30
1.93
1885--2516
127
4.9
125
80
15
613
36
18
14
30
1.91
14265--14311
16
2.9
16
81
12
60
55
10
6
27
1.58
14380--14415
17
2.2
17
90
5
56
47
8
8
36
1.64
14610--14647
20
1.9
20
88
0
58
42
7
13
36
1.73
15082--15147
11
5.8
11
73
18
55
0
30
0
69
0.88
15637--15752
30
3.9
29
79
11
101
43
3
21
31
1.69
15651--15752
30
3.4
30
84
2
134
44
3
21
30
1.70
19719--19744
7
3.7
7
100
0
52
69
0
0
30
0.89
24877--24925
24
2.1
24
85
7
66
48
6
12
32
1.65
26936--27060
18
6.9
18
88
0
187
29
23
14
32
1.94
26932--27060
54
2.4
54
96
0
231
30
23
13
32
1.93
33208--33246
18
2.0
20
85
9
55
71
0
10
17
1.12
33853--33890
18
2.1
19
85
14
53
36
13
10
39
1.79
40871--40897
11
2.5
11
100
0
54
85
0
0
14
0.61
41484--41554
3
23.3
3
71
8
54
30
2
5
60
1.34
41497--41557
23
2.8
22
85
5
70
32
3
8
55
1.45
41520--41565
23
2.0
23
83
8
58
30
2
10
56
1.46
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41797--41833
19
1.9
19
88
0
56
40
2
5
51
1.39
53798--54362
88
6.4
87
78
6
511
27
16
26
29
1.97
53793--54332
132
4.1
132
96
2
968
26
16
26
30
1.97
53821--54362
44
12.4
42
77
9
187
27
16
26
28
1.97

Tables:   1

The End!