Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1600
Parameters: 2 7 7 80 10 50 1000
Length:  53433

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
79--123
21
2.1
21
83
0
54
57
11
4
26
1.52
12846--12942
30
3.2
30
72
8
99
28
16
26
27
1.97
15086--15116
12
2.6
12
100
0
62
25
16
12
45
1.83
15177--15226
6
8.2
6
81
16
50
2
20
2
76
0.99
15166--15236
37
1.9
37
86
11
101
2
18
2
76
1.04
15162--15222
16
3.8
16
77
14
63
3
19
1
75
1.03
16147--16184
17
2.2
17
86
9
51
5
7
5
81
0.98
16164--16204
12
3.2
13
86
13
59
12
4
7
75
1.16
16164--16204
11
3.2
14
80
19
54
12
4
7
75
1.16
17910--18006
30
3.2
30
72
8
99
28
16
26
27
1.97
20743--20770
9
3.1
9
100
0
56
67
10
10
10
1.42
22020--22071
27
1.9
27
84
0
68
65
1
25
7
1.30
25725--25775
10
5.1
10
75
17
52
27
13
31
27
1.94
25727--25775
20
2.5
20
86
0
71
26
14
32
26
1.94
30766--30816
11
4.9
10
81
9
50
74
5
1
17
1.11
30768--30815
10
4.7
10
82
10
53
75
6
2
16
1.11
30788--30816
11
2.6
11
100
0
58
79
6
0
13
0.93
31729--31788
21
2.9
21
85
5
77
73
0
20
6
1.05
31740--31799
15
4.1
14
80
8
66
76
1
16
5
1.04
35441--35478
17
2.2
18
85
4
51
63
2
23
10
1.39
35460--35514
12
4.6
12
73
15
51
63
0
23
12
1.29
40657--40737
40
2.0
40
97
0
153
22
13
38
25
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44140--44183
21
2.1
21
91
0
70
84
4
4
6
0.88
44160--44188
14
2.1
14
100
0
58
72
6
6
13
1.26

Tables:   1

The End!