genome.fa.s766.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2792_ERROPOS1793843
Parameters: 2 7 7 80 10 50 1000
Length:  513059

Tables:   1   2   

This is table  2  of  2  ( 213 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
249312--250038	176	4.1	176	85	5	970	49	24	0	25	1.56
249316--250071	23	34.2	23	81	6	689	49	23	1	25	1.57
250605--250644	18	2.3	18	86	4	55	10	10	2	77	1.08
251339--251410	3	23.0	3	78	16	67	30	2	2	63	1.22
251459--251492	16	2.1	17	88	5	52	17	2	5	73	1.16
256247--256428	46	4.0	46	98	0	346	35	9	27	26	1.88
263963--264101	46	3.0	46	97	0	260	35	9	27	28	1.88
266249--266611	123	2.9	123	92	1	582	32	22	15	30	1.95
266748--266812	28	2.3	28	75	0	67	40	13	18	27	1.89
267648--267787	55	2.5	55	86	4	210	50	17	9	22	1.74
268776--268824	21	2.4	20	79	3	53	57	16	2	24	1.50
269006--269236	55	4.2	55	83	0	264	47	17	9	26	1.77
270623--270679	27	2.2	26	81	6	69	66	3	1	28	1.18
283487--283523	14	2.4	16	91	8	60	83	2	13	0	0.74
286347--286772	114	3.7	114	78	4	457	30	19	23	26	1.98
286563--286965	188	2.1	188	94	0	698	32	18	22	27	1.97
286745--287095	113	3.1	112	79	8	406	31	19	22	26	1.98
287117--287166	17	3.0	17	94	2	84	34	0	16	50	1.45
287206--287282	7	11.0	7	73	5	57	18	1	35	45	1.58
289206--289245	11	3.7	11	90	3	64	35	10	27	27	1.89
290586--290884	17	16.6	17	70	24	161	43	11	1	42	1.51
290603--290766	40	3.7	40	73	24	157	43	10	1	43	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
290577--290726	57	2.6	57	95	2	266	44	11	1	42	1.48
290606--290917	97	3.2	97	93	4	518	42	10	2	44	1.52
290703--290827	57	2.1	60	92	5	211	44	12	1	42	1.51
290598--290900	101	3.0	100	93	5	533	42	10	1	44	1.50
290752--290867	44	2.7	43	90	5	184	43	11	1	43	1.50
290796--290917	57	2.1	57	92	0	199	41	10	2	45	1.52
290889--290959	13	5.5	13	86	0	106	39	7	2	50	1.44
290889--290960	26	2.8	26	100	0	144	40	6	2	50	1.44
291106--291255	73	2.1	73	100	0	300	50	1	6	41	1.37
291107--291223	38	3.2	38	67	16	118	53	1	7	36	1.40
291296--291618	19	17.5	19	66	25	110	47	20	0	31	1.57
291311--291432	18	6.4	18	67	25	74	44	18	1	35	1.60
291292--291690	26	16.1	26	84	10	516	46	20	0	32	1.56
291682--291735	9	5.7	10	79	20	55	42	20	0	37	1.52
291656--291721	18	3.6	18	84	10	89	46	18	0	34	1.49
291597--291735	18	8.0	18	67	30	65	44	20	0	34	1.52
297184--297254	21	3.4	21	80	0	79	33	18	45	2	1.64
297478--297511	14	2.4	14	95	0	59	17	8	20	52	1.71
297580--297867	126	2.3	125	84	3	362	29	20	20	29	1.98
297580--297868	42	6.9	40	81	8	256	29	20	20	29	1.98
297565--297868	84	3.6	82	81	4	320	28	20	21	30	1.98
297667--297869	42	4.8	42	86	3	275	25	22	21	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
314973--315010	18	2.1	19	90	5	60	52	5	21	21	1.66
320428--320745	110	2.9	110	87	2	455	29	17	18	34	1.94
324258--324308	7	7.1	7	80	12	50	82	7	0	9	0.85
324265--324305	13	3.3	13	87	12	52	82	9	0	7	0.83
326915--327441	125	4.2	125	97	0	975	35	19	19	25	1.96
327055--327104	25	2.0	25	84	0	64	36	20	18	26	1.95
326915--327441	249	2.1	250	96	0	975	35	19	19	25	1.96
330331--330647	110	2.9	109	87	3	451	29	17	18	33	1.95
334422--334455	17	2.0	17	94	0	59	44	50	0	5	1.26
339052--339085	17	2.0	17	94	0	59	44	50	0	5	1.26
341420--341451	14	2.3	14	100	0	64	31	6	9	53	1.58
342629--342709	42	1.9	42	94	0	144	19	11	22	46	1.81
343189--343285	48	2.0	48	91	0	158	42	4	20	32	1.71
357615--357670	6	9.0	6	77	14	51	73	0	5	21	1.03
357616--357670	19	3.0	19	79	10	53	72	0	5	21	1.04
364176--364236	20	3.0	20	97	0	113	40	0	4	54	1.22
364199--364239	11	3.9	11	75	12	50	34	0	4	60	1.18
364388--364430	21	2.0	21	90	0	68	20	30	11	37	1.89
375900--376036	42	3.3	42	92	0	211	43	13	27	14	1.84
376089--376283	74	2.6	75	89	1	293	26	8	26	38	1.85
376971--377039	33	2.2	31	82	12	86	36	2	0	60	1.11
377648--377673	11	2.4	11	100	0	52	42	19	0	38	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
380268--380316	21	2.4	20	79	3	53	57	16	2	24	1.50
381756--381782	3	9.0	3	100	0	54	66	0	0	33	0.92
382833--382862	15	1.9	16	93	6	53	6	0	46	46	1.29
382902--383122	55	4.0	55	86	0	280	46	17	9	26	1.79
384448--384525	33	2.2	36	82	17	117	56	0	7	35	1.28
384457--384525	33	2.1	33	100	0	138	53	0	8	37	1.32
387096--387128	13	2.5	13	95	5	57	6	0	48	45	1.27
390222--390271	17	2.7	20	78	18	70	10	0	44	46	1.37
394850--394899	17	2.7	20	78	18	70	10	0	44	46	1.37
399166--399223	3	19.0	3	89	3	80	34	5	0	60	1.19
403641--403698	12	4.8	12	100	0	116	34	24	25	15	1.95
414103--414133	13	2.4	13	94	0	53	35	0	0	64	0.94
414103--414156	16	3.4	16	76	2	56	35	5	1	57	1.33
433373--433483	43	2.6	43	82	5	143	26	21	24	27	1.99
445885--445959	28	2.6	28	71	17	64	57	1	5	36	1.30
446047--446090	23	2.0	22	86	4	61	54	11	4	29	1.56
446129--446158	3	10.0	3	100	0	60	66	0	0	33	0.92
454920--454955	17	2.1	18	89	5	56	50	5	22	22	1.70
476629--476667	19	2.0	20	95	5	71	28	15	10	46	1.78
476838--476866	6	4.8	6	100	0	58	17	13	0	68	1.20
481534--481602	33	2.1	34	94	2	122	34	21	5	37	1.78
484075--484108	16	2.1	16	88	0	50	50	14	17	17	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
486911--486951	21	2.0	21	90	0	64	29	21	29	19	1.98
488855--488888	16	2.1	16	88	0	50	50	14	17	17	1.79
497201--497253	2	26.5	2	80	0	52	11	0	37	50	1.38
509261--509354	30	3.1	30	90	1	143	25	24	6	43	1.78
509271--509348	15	5.2	15	67	11	61	25	21	7	44	1.79

Tables:   1   2

The End!