Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1252
Parameters: 2 7 7 80 10 50 1000
Length:  134262

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
659--711
23
2.4
22
76
20
56
9
18
1
69
1.25
11985--12025
15
2.7
16
74
11
50
7
26
0
65
1.18
12179--12217
15
2.4
15
87
12
51
10
20
2
66
1.33
13036--13102
28
2.4
28
92
2
109
10
10
2
76
1.13
13147--13175
12
2.5
12
94
5
51
13
3
6
75
1.13
16369--16409
15
2.7
16
74
11
50
7
26
0
65
1.18
16564--16602
15
2.4
15
87
12
51
10
20
2
66
1.33
17420--17484
26
2.4
27
89
2
96
10
10
3
75
1.15
17529--17571
13
3.4
12
87
9
59
13
4
6
74
1.19
17529--17571
12
3.3
14
84
15
65
13
4
6
74
1.19
26830--26876
23
2.1
23
84
7
62
51
12
4
31
1.59
32130--32169
16
2.6
16
96
4
73
20
12
5
62
1.48
32205--32238
11
2.9
12
82
8
52
17
5
2
73
1.16
32209--32241
11
3.0
11
90
0
57
18
3
6
72
1.18
38424--38656
45
5.2
45
95
0
394
26
21
15
37
1.92
41153--41227
30
2.5
30
100
0
150
34
10
16
38
1.83
42496--42548
23
2.4
22
76
20
56
9
18
1
69
1.25
47182--47225
22
2.0
22
95
0
79
34
4
36
25
1.76
53088--53136
10
4.9
10
78
9
55
26
30
16
26
1.97
53088--53134
20
2.3
20
89
7
69
25
31
17
25
1.97
63374--63413
11
3.5
11
89
3
53
72
2
5
20
1.15
63374--63406
12
2.8
12
100
0
66
69
0
6
24
1.10
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
63371--63418
11
4.2
11
84
7
51
64
4
4
27
1.30
63455--63496
15
2.7
15
96
3
75
64
4
11
19
1.44
72611--72657
20
2.3
20
81
0
58
19
12
36
31
1.89
80564--80598
9
3.8
9
88
3
52
11
8
8
71
1.31
88440--88492
23
2.4
22
76
20
56
69
1
18
9
1.25
101363--101403
21
2.0
21
90
0
64
31
34
4
29
1.79
103479--103503
12
2.1
12
100
0
50
48
12
8
32
1.69
120372--120427
21
2.6
21
85
2
67
32
33
5
28
1.80
121201--121253
23
2.4
22
76
20
56
9
18
1
69
1.25
124861--124957
30
3.2
30
75
2
106
27
26
16
28
1.97
126741--126771
12
2.5
12
94
5
53
90
3
0
6
0.55
127642--127703
5
12.0
5
76
19
56
77
1
19
1
0.94
127642--127703
26
2.4
26
78
10
74
77
1
19
1
0.94
127632--127701
37
1.9
36
88
8
106
77
1
18
2
0.97
127635--127703
15
4.6
14
76
18
59
76
1
18
2
0.98
127642--127701
21
2.8
21
77
7
68
78
1
18
1
0.92
127642--127690
6
8.2
6
81
18
50
77
2
20
0
0.87
127751--127781
12
2.6
12
100
0
62
45
12
16
25
1.83
127784--127815
12
2.8
12
95
4
57
78
0
15
6
0.95

Tables:   1

The End!