genome.fa.s770.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1526
Parameters: 2 7 7 80 10 50 1000
Length:  133981

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
239--335	30	3.2	30	72	8	99	28	16	26	27	1.97
13717--13755	8	4.6	8	87	12	60	74	0	12	12	1.08
14920--14962	15	2.8	16	96	3	79	20	11	4	62	1.46
14999--15048	12	4.2	12	85	10	75	18	2	8	72	1.19
16040--16086	23	2.1	23	84	7	62	51	12	4	31	1.59
19770--19801	14	2.3	14	94	0	55	81	0	0	18	0.70
22536--22595	18	3.2	18	78	7	66	8	18	0	73	1.08
23537--23585	18	2.6	19	81	12	66	14	8	2	75	1.12
24319--24350	14	2.3	14	94	0	55	81	0	0	18	0.70
26090--26214	62	2.0	62	84	3	162	20	30	17	32	1.95
33292--33351	10	5.9	10	77	11	50	36	11	25	26	1.90
33303--33352	20	2.5	20	84	15	59	34	14	26	26	1.94
33293--33401	30	3.6	30	76	6	96	33	12	31	22	1.91
35912--35964	23	2.4	22	76	20	56	9	18	1	69	1.25
39374--39420	20	2.3	20	85	7	60	25	29	17	27	1.97
41038--41087	18	2.5	20	87	9	68	74	2	20	4	1.08
44792--44838	23	2.1	23	84	7	62	51	12	4	31	1.59
50160--50200	15	2.6	16	88	7	57	21	12	2	63	1.40
51244--51290	23	2.1	23	84	7	62	51	12	4	31	1.59
52296--52354	23	2.5	25	78	13	70	35	33	5	25	1.78
69476--69538	21	3.0	21	88	2	90	30	3	33	33	1.74
74305--74365	21	3.0	21	78	11	72	29	3	34	32	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76307--76358	20	2.6	20	84	0	68	25	21	15	38	1.92
76315--76378	30	2.1	30	88	5	94	21	20	18	39	1.93
76307--76369	20	3.2	20	72	17	58	23	22	14	39	1.91
77960--77989	11	2.8	11	95	5	53	80	10	0	10	0.92
79089--79217	12	10.8	12	71	12	50	68	3	18	10	1.32
79115--79215	18	5.4	18	74	5	76	71	3	17	6	1.24
79111--79215	6	17.2	6	69	6	68	71	3	18	6	1.23
79200--79247	18	2.7	18	78	18	55	70	0	12	16	1.16
79206--79247	17	2.4	18	80	15	52	71	0	14	14	1.15
81097--81150	20	2.7	20	82	0	63	24	20	18	37	1.94
81097--81170	30	2.5	30	86	8	98	21	20	18	39	1.93
81097--81161	20	3.2	20	71	16	53	23	21	16	38	1.93
82672--82708	19	1.9	19	88	0	56	43	29	8	18	1.79
82764--82789	13	2.0	13	100	0	52	30	0	0	69	0.89
83183--83249	28	2.5	28	79	18	79	10	13	7	68	1.38
85374--85414	17	2.4	18	80	8	50	14	24	4	56	1.58
91706--91733	4	7.0	4	100	0	56	25	0	0	75	0.81
94317--94375	23	2.5	25	78	13	70	35	33	5	25	1.78
101682--101734	23	2.4	22	76	20	56	9	18	1	69	1.25
104893--104946	20	2.7	20	82	0	63	24	20	18	37	1.94
104893--104966	30	2.5	30	86	8	98	21	20	18	39	1.93
104893--104957	20	3.2	20	71	16	53	23	21	16	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106556--106610	18	3.1	18	74	10	60	74	1	14	9	1.14
107620--107654	17	2.1	16	89	5	52	82	2	14	0	0.77
107620--107725	6	17.7	6	67	13	58	73	2	16	6	1.16
107686--107723	13	2.8	13	82	17	51	73	0	18	7	1.06
107606--107723	11	10.0	12	70	18	61	72	2	16	8	1.21
107687--107737	21	2.4	21	74	6	50	74	1	17	5	1.11
107740--107802	33	1.9	33	84	12	85	55	6	25	12	1.60
109578--109631	20	2.7	20	82	0	63	24	20	18	37	1.94
109578--109651	30	2.5	30	86	8	98	21	20	18	39	1.93
109578--109642	20	3.2	20	71	16	53	23	21	16	38	1.93
115619--115715	30	3.2	30	77	2	115	29	15	25	28	1.96
117279--117314	17	2.1	18	89	5	56	63	5	22	8	1.43
118711--118769	20	3.0	20	80	14	68	33	11	28	25	1.91
122663--122713	24	2.2	23	82	10	59	11	23	0	64	1.26
122702--122746	20	2.2	20	80	0	54	8	24	2	64	1.34
128220--128252	17	1.9	17	93	0	57	45	9	3	42	1.51
130195--130242	20	2.4	20	67	0	51	33	18	27	20	1.96
131848--131880	15	2.1	16	88	5	50	9	33	0	57	1.30
131886--131935	13	3.8	13	86	2	73	8	16	0	76	1.02
131879--131935	27	2.2	26	90	3	87	12	15	0	71	1.13
131886--132003	6	19.2	6	70	10	78	6	16	3	73	1.18
133010--133067	12	4.7	12	74	14	55	5	13	3	77	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
133050--133108	21	2.8	21	74	5	57	8	8	5	77	1.10

Tables:   1

The End!