Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold3512
Parameters: 2 7 7 80 10 50 1000
Length:  115983

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3268--3387
57
2.1
56
93
4
206
14
21
16
47
1.82
3958--4190
45
5.2
45
95
0
394
25
21
15
37
1.93
11668--11712
23
1.9
23
86
13
65
64
8
15
11
1.49
22166--22206
17
2.4
18
80
8
50
14
24
4
56
1.58
22137--22190
24
2.2
25
78
15
60
11
22
3
62
1.43
28417--29415
499
2.0
499
99
0
1989
30
15
19
34
1.93
37594--37648
29
2.0
27
82
13
67
60
10
14
14
1.60
40829--40881
23
2.4
22
76
20
56
9
18
1
69
1.25
46981--47019
19
2.2
17
86
9
51
46
2
7
43
1.46
49262--49301
18
2.2
18
90
0
62
70
2
17
10
1.27
56741--56793
26
2.0
26
89
7
81
71
1
3
22
1.12
56741--56800
12
4.5
13
78
17
61
73
1
3
21
1.07
58931--59037
56
1.9
56
86
3
153
25
21
13
40
1.89
59661--59715
20
2.8
20
88
0
83
29
16
29
25
1.97
61842--61890
18
2.6
19
78
18
57
73
2
2
22
1.04
65306--65338
16
2.1
16
88
5
50
27
27
6
39
1.80
68624--68657
13
2.6
13
100
0
68
11
0
5
82
0.83
68618--68664
13
3.7
13
85
5
60
21
4
4
70
1.22
76230--76295
23
2.9
23
95
0
114
33
27
4
34
1.77
81441--81492
23
2.3
22
75
21
54
9
23
1
65
1.32
86312--86400
23
3.9
23
95
0
151
32
25
5
35
1.80
86539--86568
4
7.8
4
92
7
53
23
0
0
76
0.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
88943--88987
23
1.9
23
86
13
65
68
0
22
8
1.16
101190--101248
18
3.2
18
80
7
73
8
16
1
72
1.17
101202--101248
20
2.5
19
86
10
69
8
19
0
72
1.10
102190--102247
17
3.5
17
88
4
91
20
5
0
74
1.01
102173--102260
33
2.7
33
72
16
85
18
7
2
71
1.21
102220--102271
20
2.7
19
82
8
70
13
7
1
76
1.07
107032--107245
106
2.0
106
98
0
410
33
23
12
30
1.91
109717--109769
23
2.4
22
76
20
56
9
18
1
69
1.25
113043--113071
14
2.0
15
93
6
51
75
3
13
6
1.13

Tables:   1

The End!