Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2651
Parameters: 2 7 7 80 10 50 1000
Length:  82942

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6038--6140
6
17.0
6
69
13
59
6
19
2
70
1.22
7213--7264
14
4.5
11
80
15
52
15
5
5
73
1.22
8839--8903
20
3.3
19
73
16
51
38
16
21
23
1.93
9404--9438
13
2.7
13
90
0
52
45
0
11
42
1.40
10048--10091
22
2.0
22
95
0
79
34
4
36
25
1.76
15242--15288
20
2.3
20
81
0
58
23
12
34
29
1.92
17162--17221
6
9.8
6
76
20
54
1
20
0
78
0.84
17159--17222
15
4.5
15
88
5
80
1
21
0
76
0.87
19299--19341
12
3.9
11
87
9
52
11
6
6
74
1.21
19311--19354
12
3.6
12
87
6
70
13
2
6
77
1.07
19311--19354
13
3.5
13
90
3
72
13
2
6
77
1.07
21020--21066
23
2.1
23
84
7
62
51
12
4
31
1.59
27516--27551
6
6.0
6
93
0
54
38
27
0
33
1.57
27560--27604
20
2.2
20
84
4
54
8
26
0
64
1.23
27540--27607
28
2.5
28
82
2
84
14
25
0
60
1.35
28417--28488
29
2.5
29
84
13
103
11
11
2
75
1.16
28526--28574
14
3.4
14
80
2
62
16
4
4
75
1.11
28538--28574
15
2.4
15
90
4
56
16
5
2
75
1.10
32099--32148
13
3.8
13
84
10
75
20
12
0
68
1.21
32099--32151
27
2.0
26
92
3
88
22
13
0
64
1.28
32189--32231
13
3.6
12
84
6
52
13
4
6
74
1.19
32189--32221
13
2.5
13
95
0
57
15
6
3
75
1.11
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33226--33272
23
2.1
23
84
7
62
51
12
4
31
1.59
34652--34715
23
2.8
23
92
4
103
23
12
20
43
1.85
39508--39560
23
2.4
22
76
20
56
9
18
1
69
1.25
39555--39606
27
1.9
27
88
0
77
7
23
1
67
1.27
43961--44029
14
5.1
13
71
11
50
75
2
14
7
1.13
44988--45055
18
3.6
18
70
14
55
51
2
27
17
1.60
45031--45136
48
2.2
47
85
9
135
59
1
24
14
1.45
46807--46853
20
2.3
20
85
0
67
29
36
12
21
1.91
50300--50348
10
4.9
10
78
9
55
26
16
30
26
1.97
50302--50348
20
2.3
20
89
7
69
25
17
31
25
1.97
52204--52284
12
6.8
12
69
17
53
12
24
1
61
1.38
52219--52274
18
3.0
20
68
26
59
10
26
0
62
1.28
52314--52360
15
3.1
15
84
9
60
12
17
0
70
1.17
53399--53451
23
2.4
22
75
9
54
9
18
1
69
1.25
66519--66559
17
2.4
18
80
8
50
14
24
4
56
1.58
66490--66543
24
2.2
25
78
15
60
11
22
3
62
1.43
74379--74431
21
2.5
21
90
3
79
33
33
1
30
1.69
77054--77106
23
2.4
22
76
20
56
9
18
1
69
1.25
79055--79120
20
3.1
21
78
8
62
33
33
3
30
1.73
82146--82224
18
4.2
18
68
17
52
8
24
1
65
1.28

Tables:   1

The End!