Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold3549
Parameters: 2 7 7 80 10 50 1000
Length:  67938

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2971--3297
46
7.0
47
89
9
469
30
9
29
30
1.88
5171--5270
42
2.4
42
95
5
177
22
15
36
27
1.93
5636--5810
40
4.5
38
80
10
178
26
22
26
24
2.00
5636--5824
79
2.4
80
82
6
219
25
22
26
24
2.00
9042--9463
47
9.1
47
92
3
678
31
9
30
28
1.88
9042--9463
92
4.5
94
92
4
678
31
9
30
28
1.88
9582--9660
37
2.1
37
88
4
115
25
18
30
25
1.98
12866--12921
30
1.9
28
82
13
69
60
10
14
14
1.58
18330--18377
25
1.9
25
91
8
80
43
12
22
20
1.86
21899--22082
40
4.6
40
81
6
187
23
20
27
28
1.99
21899--22079
80
2.3
81
83
9
212
23
20
27
28
1.99
21979--22129
40
3.8
39
80
6
126
25
21
27
25
1.99
24364--24402
17
2.2
18
86
4
53
66
0
20
12
1.24
24364--24402
18
2.2
18
86
9
53
66
0
20
12
1.24
26894--26934
21
2.0
21
85
0
55
9
24
0
65
1.22
30889--30938
21
2.4
21
83
3
57
8
22
2
68
1.26
30901--30951
21
2.3
23
83
12
63
7
21
0
70
1.12
38993--39026
13
2.5
13
90
4
50
5
14
5
73
1.21
42607--42797
50
3.8
50
85
4
242
30
14
13
41
1.84
62264--62309
24
1.9
24
82
8
58
69
0
19
10
1.17

Tables:   1

The End!