Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2476
Parameters: 2 7 7 80 10 50 1000
Length:  62231

Tables:   1   

This is table  1  of  1  ( 65 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12349--12646
44
6.9
44
73
9
213
31
20
21
25
1.98
12436--12768
174
1.9
170
85
7
458
31
20
21
27
1.97
13293--13342
16
3.1
16
80
8
57
52
42
0
6
1.26
14516--14541
3
8.7
3
100
0
52
34
0
0
65
0.93
18227--18274
23
2.1
23
88
0
69
60
4
6
29
1.40
19068--19098
10
2.9
11
95
4
55
9
0
12
77
0.99
21515--21560
19
2.3
21
92
7
78
73
2
4
19
1.10
22960--23245
132
2.2
132
89
1
421
23
22
22
32
1.98
23066--23245
44
4.1
44
68
11
116
23
22
20
32
1.98
29725--29770
19
2.3
21
92
7
78
73
2
4
19
1.10
30956--31002
24
2.0
24
87
8
69
31
10
0
57
1.33
30956--30993
12
3.2
12
82
10
51
34
10
0
55
1.34
31189--31223
15
2.2
16
90
5
54
31
2
0
65
1.07
32993--33039
19
2.5
19
86
6
60
27
19
8
44
1.79
35882--35923
14
2.9
14
82
13
50
61
2
19
16
1.44
37133--37686
89
6.2
89
83
2
666
29
16
25
29
1.97
37166--37714
133
4.1
133
90
1
805
29
16
25
28
1.97
37133--37686
222
2.5
222
84
1
743
29
16
25
29
1.97
39208--39254
24
2.0
24
87
8
69
31
10
0
57
1.33
39208--39245
12
3.2
12
82
10
51
34
10
0
55
1.34
40831--40857
13
2.1
13
100
0
54
0
0
22
77
0.76
46753--46786
17
2.0
17
100
0
68
23
5
17
52
1.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46755--46793
17
2.4
17
86
4
53
25
5
15
53
1.62
48511--48565
21
2.6
21
80
13
76
40
7
9
43
1.64
48543--49063
17
29.8
17
70
11
245
43
11
11
33
1.77
48582--48858
97
2.8
97
80
8
256
44
12
9
33
1.75
48691--49045
36
9.9
36
71
13
134
42
11
12
34
1.78
48999--49052
16
3.2
16
75
14
56
40
9
14
35
1.78
49216--49266
17
3.0
16
77
11
57
72
1
0
25
0.95
49395--49452
10
6.7
9
78
13
52
0
15
1
82
0.74
49393--49450
17
3.5
16
81
13
73
0
17
1
81
0.78
49405--49453
16
3.3
15
84
15
66
0
16
0
83
0.64
49571--49616
23
2.0
23
100
0
92
0
26
4
69
1.07
49742--49812
17
4.0
18
80
14
60
0
29
0
70
0.88
49743--49813
3
23.0
3
78
13
65
0
30
0
69
0.89
49752--49809
28
2.1
28
83
6
73
0
31
0
68
0.89
49782--49810
10
2.9
10
100
0
58
0
37
0
62
0.96
49744--49810
34
2.0
34
85
5
91
0
31
0
68
0.90
49869--49918
10
5.2
10
80
7
59
0
30
0
70
0.88
49873--49915
19
2.3
19
88
11
63
0
30
0
69
0.88
50169--50284
30
3.9
29
75
15
85
43
3
21
31
1.69
50183--50284
30
3.4
30
81
8
127
44
3
21
30
1.70
50555--50772
54
4.1
55
88
8
324
37
17
16
28
1.92
50751--50785
14
2.5
14
90
0
52
60
2
17
20
1.49
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50874--51121
85
2.8
87
81
10
308
36
18
18
26
1.94
51034--51067
16
2.1
16
88
0
50
64
5
11
17
1.45
50874--51128
91
2.9
88
83
9
324
36
18
18
26
1.94
51051--51369
123
2.6
123
94
1
548
36
21
14
26
1.92
51209--52011
191
4.2
192
98
1
1531
35
20
13
30
1.92
51209--52011
381
2.1
385
97
1
1533
35
20
13
30
1.92
51838--52005
70
2.4
68
80
5
167
33
22
14
30
1.93
60031--60511
17
28.3
16
67
19
146
43
11
11
34
1.76
60080--60249
94
1.8
93
83
6
227
44
10
8
37
1.68
60303--60332
16
1.9
16
93
6
53
40
13
13
33
1.83
60260--60369
35
3.1
34
76
11
89
40
11
11
35
1.79
61534--61593
14
4.2
14
76
17
61
71
0
28
0
0.86
61545--61596
16
3.1
16
83
5
59
76
0
23
0
0.78
61532--61596
25
2.6
24
82
7
67
72
0
27
0
0.85
61673--61706
18
1.9
18
88
5
52
70
20
8
0
1.13
61726--61766
22
1.9
22
95
5
75
73
0
26
0
0.84
61730--61765
12
2.8
13
83
8
56
72
0
27
0
0.85
61895--61946
8
6.6
8
75
4
52
80
1
15
1
0.88
61896--61946
15
3.3
15
82
17
61
80
1
15
1
0.89
61897--61948
21
2.4
22
78
12
54
78
1
17
1
0.93
61898--61948
22
2.3
21
86
6
66
78
1
17
1
0.94

Tables:   1

The End!