Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2471
Parameters: 2 7 7 80 10 50 1000
Length:  54870

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5674--5897
40
5.7
40
86
7
264
25
22
27
25
2.00
5674--5897
79
2.8
80
84
6
285
25
22
27
25
2.00
5727--5904
39
4.5
38
91
3
212
25
21
27
24
2.00
5727--5897
78
2.2
78
87
6
238
25
22
27
25
2.00
5727--5930
79
2.6
79
83
5
218
26
21
26
25
1.99
7502--7535
17
2.0
17
94
0
59
47
11
2
38
1.55
10226--10260
15
2.3
15
90
5
52
57
5
2
34
1.37
10523--10566
19
2.3
19
92
0
70
50
2
13
34
1.55
11565--11598
15
2.3
15
100
0
68
35
26
0
38
1.57
15298--15355
29
2.0
29
93
0
98
34
20
3
41
1.69
17704--17732
14
2.1
14
100
0
58
27
13
6
51
1.66
22402--22430
14
2.1
14
100
0
58
51
6
13
27
1.66
24294--24337
19
2.3
19
96
0
79
52
0
13
34
1.41
25338--25371
15
2.3
15
100
0
68
35
26
0
38
1.57
25991--26028
12
3.3
12
89
7
53
68
5
5
21
1.29
28429--28469
10
4.0
10
87
3
55
34
0
19
46
1.50
37703--37733
15
2.1
15
100
0
62
19
12
0
67
1.22
45832--45893
32
1.9
32
96
0
115
38
22
9
29
1.86
47566--47745
95
1.9
96
81
12
219
31
8
29
30
1.88
47545--47773
49
4.7
48
77
16
188
31
7
29
31
1.86

Tables:   1

The End!