Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1749
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 50223
ACGTcount: A:0.36, C:0.16, G:0.19, T:0.29
Found at i:895 original size:26 final size:25
Alignment explanation
Indices: 846--912 Score: 93
Period size: 26 Copynumber: 2.7 Consensus size: 25
836 TTAACAGAAC
*
846 AAAAAATAAA--AAAAAAAAATAAA
1 AAAAAATAAATTAAAAAAAAAAAAA
869 AAAAAATAAATTAAACAAAAAAAAAA
1 AAAAAATAAATTAAA-AAAAAAAAAA
*
895 AAAAATTAAATTAAAAAA
1 AAAAAATAAATTAAAAAA
913 TATGTATCAA
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
23 10 0.26
25 6 0.15
26 23 0.59
ACGTcount: A:0.85, C:0.01, G:0.00, T:0.13
Consensus pattern (25 bp):
AAAAAATAAATTAAAAAAAAAAAAA
Found at i:912 original size:1 final size:1
Alignment explanation
Indices: 846--899 Score: 54
Period size: 1 Copynumber: 54.0 Consensus size: 1
836 TTAACAGAAC
* * * ** *
846 AAAAAATAAAAAAAAAAAATAAAAAAAAATAAATTAAACAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
900 TTAAATTAAA
Statistics
Matches: 43, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
1 43 1.00
ACGTcount: A:0.89, C:0.02, G:0.00, T:0.09
Consensus pattern (1 bp):
A
Found at i:1006 original size:20 final size:20
Alignment explanation
Indices: 981--1025 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
971 AAGAAAGTAT
*
981 AAAAAAACAA-CAAAAAATA
1 AAAAAAAAAACCAAAAAATA
**
1000 AAAAAAAAAACCGTAAAATA
1 AAAAAAAAAACCAAAAAATA
1020 AAAAAA
1 AAAAAA
1026 TGAGAAAAGA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 9 0.41
20 13 0.59
ACGTcount: A:0.82, C:0.09, G:0.02, T:0.07
Consensus pattern (20 bp):
AAAAAAAAAACCAAAAAATA
Found at i:1057 original size:33 final size:32
Alignment explanation
Indices: 1020--1081 Score: 79
Period size: 32 Copynumber: 1.9 Consensus size: 32
1010 CCGTAAAATA
*
1020 AAAAAATGAGAAAAGAAAAAAATAAAAAAACCC
1 AAAAAATGAGAAAA-AAAAAAAGAAAAAAACCC
* * *
1053 AAAAAATTAGTAAAAAAATAAGAAAAAAA
1 AAAAAATGAGAAAAAAAAAAAGAAAAAAA
1082 GAAATCTATA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
32 13 0.52
33 12 0.48
ACGTcount: A:0.77, C:0.05, G:0.08, T:0.10
Consensus pattern (32 bp):
AAAAAATGAGAAAAAAAAAAAGAAAAAAACCC
Found at i:1965 original size:1 final size:1
Alignment explanation
Indices: 1607--1956 Score: 538
Period size: 1 Copynumber: 350.0 Consensus size: 1
1597 AACATAAAGT
* * * *
1607 AAAAAAAAAAACAAAATAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * *
1672 ACAAAAAAAATAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
*
1737 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
** * *
1802 AATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAACAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * ** *
1867 AAAAAAAAAACAAAAAAAACAAAAAAAAAAAAAAAATTAAAAAAAAAAAAAAATAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
*
1932 AAAAAAATAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAA
1957 CATAAAAAAT
Statistics
Matches: 317, Mismatches: 32, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
1 317 1.00
ACGTcount: A:0.95, C:0.02, G:0.00, T:0.03
Consensus pattern (1 bp):
A
Found at i:2693 original size:16 final size:14
Alignment explanation
Indices: 2673--2711 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 14
2663 GAAAACACGC
*
2673 AAAAAAACATAAAA
1 AAAAAAAAATAAAA
2687 AACAAAAATAATAAAA
1 AA-AAAAA-AATAAAA
2703 AAAAAAAAA
1 AAAAAAAAA
2712 ATTTTACACA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
14 4 0.18
15 10 0.45
16 8 0.36
ACGTcount: A:0.87, C:0.05, G:0.00, T:0.08
Consensus pattern (14 bp):
AAAAAAAAATAAAA
Found at i:4131 original size:10 final size:10
Alignment explanation
Indices: 4116--4148 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
4106 GGAACGGAAA
4116 AAAAAAAAAC
1 AAAAAAAAAC
4126 -AAAAAAAAC
1 AAAAAAAAAC
*
4135 AAATAAAAAC
1 AAAAAAAAAC
4145 AAAA
1 AAAA
4149 CCAAAAAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
9 9 0.45
10 11 0.55
ACGTcount: A:0.88, C:0.09, G:0.00, T:0.03
Consensus pattern (10 bp):
AAAAAAAAAC
Found at i:4148 original size:24 final size:24
Alignment explanation
Indices: 4115--4170 Score: 76
Period size: 24 Copynumber: 2.3 Consensus size: 24
4105 GGGAACGGAA
4115 AAAAAAAAAACAAAAAAAACAAAT
1 AAAAAAAAAACAAAAAAAACAAAT
* * **
4139 AAAAACAAAACCAAAAAAATTAAT
1 AAAAAAAAAACAAAAAAAACAAAT
4163 AAAAAAAA
1 AAAAAAAA
4171 TAAACATCAA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.84, C:0.09, G:0.00, T:0.07
Consensus pattern (24 bp):
AAAAAAAAAACAAAAAAAACAAAT
Found at i:4167 original size:25 final size:25
Alignment explanation
Indices: 4114--4176 Score: 74
Period size: 24 Copynumber: 2.5 Consensus size: 25
4104 GGGGAACGGA
4114 AAAAAAAAAAACAAAAAAAACAAAT
1 AAAAAAAAAAACAAAAAAAACAAAT
* * **
4139 -AAAAACAAAACCAAAAAAATTAAT
1 AAAAAAAAAAACAAAAAAAACAAAT
4163 AAAAAAAATAAACA
1 AAAAAAAA-AAACA
4177 TCAAAAATAA
Statistics
Matches: 30, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
24 20 0.67
25 6 0.20
26 4 0.13
ACGTcount: A:0.83, C:0.10, G:0.00, T:0.08
Consensus pattern (25 bp):
AAAAAAAAAAACAAAAAAAACAAAT
Found at i:4174 original size:9 final size:9
Alignment explanation
Indices: 4113--4148 Score: 56
Period size: 9 Copynumber: 4.0 Consensus size: 9
4103 AGGGGAACGG
4113 AAAA-AAAA
1 AAAACAAAA
4121 AAAACAAAA
1 AAAACAAAA
4130 AAAACAAATA
1 AAAACAAA-A
4140 AAAACAAAA
1 AAAACAAAA
4149 CCAAAAAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
8 4 0.15
9 13 0.50
10 9 0.35
ACGTcount: A:0.89, C:0.08, G:0.00, T:0.03
Consensus pattern (9 bp):
AAAACAAAA
Found at i:6516 original size:1 final size:1
Alignment explanation
Indices: 6510--6572 Score: 117
Period size: 1 Copynumber: 63.0 Consensus size: 1
6500 ACTCTAGACG
*
6510 AAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
6573 GAGGAACTCA
Statistics
Matches: 60, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
1 60 1.00
ACGTcount: A:0.98, C:0.02, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:12319 original size:1 final size:1
Alignment explanation
Indices: 12160--12301 Score: 203
Period size: 1 Copynumber: 142.0 Consensus size: 1
12150 AAATTGATAG
* *
12160 AAAAAAAAAAAAAAAGAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * * * * *
12225 AAAAAAAAAAAAAAGAAAAAAAAAACAAAAAAAAAAAAATAAAATAAAAACAAAAACAACAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
12290 AAAAAAAAAAAA
1 AAAAAAAAAAAA
12302 CCAAACATGA
Statistics
Matches: 123, Mismatches: 18, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
1 123 1.00
ACGTcount: A:0.94, C:0.03, G:0.01, T:0.02
Consensus pattern (1 bp):
A
Found at i:18028 original size:20 final size:19
Alignment explanation
Indices: 17992--18042 Score: 57
Period size: 20 Copynumber: 2.6 Consensus size: 19
17982 ACATGTATTA
17992 AATTAAGACAAACTTAATT
1 AATTAAGACAAACTTAATT
* *
18011 AATTCAAGACATATTTAATTT
1 AATT-AAGACAAACTTAA-TT
*
18032 AACTAAGACAA
1 AATTAAGACAA
18043 GACAAATTAA
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
19 4 0.15
20 17 0.65
21 5 0.19
ACGTcount: A:0.51, C:0.12, G:0.06, T:0.31
Consensus pattern (19 bp):
AATTAAGACAAACTTAATT
Found at i:20398 original size:19 final size:20
Alignment explanation
Indices: 20365--20403 Score: 71
Period size: 19 Copynumber: 2.0 Consensus size: 20
20355 GCAAGCTGAT
20365 TTTAGCTCGGTTTTAGCTCC
1 TTTAGCTCGGTTTTAGCTCC
20385 TTTAGCTC-GTTTTAGCTCC
1 TTTAGCTCGGTTTTAGCTCC
20404 AACCAGCTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.10, C:0.26, G:0.18, T:0.46
Consensus pattern (20 bp):
TTTAGCTCGGTTTTAGCTCC
Found at i:20400 original size:10 final size:10
Alignment explanation
Indices: 20364--20402 Score: 53
Period size: 11 Copynumber: 3.9 Consensus size: 10
20354 TGCAAGCTGA
20364 TTTTAGCTCGG
1 TTTTAGCTC-G
20375 TTTTAGCTC-
1 TTTTAGCTCG
*
20384 CTTTAGCTCG
1 TTTTAGCTCG
20394 TTTTAGCTC
1 TTTTAGCTC
20403 CAACCAGCTC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
9 8 0.32
10 8 0.32
11 9 0.36
ACGTcount: A:0.10, C:0.23, G:0.18, T:0.49
Consensus pattern (10 bp):
TTTTAGCTCG
Found at i:20430 original size:20 final size:20
Alignment explanation
Indices: 20407--20446 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
20397 TAGCTCCAAC
**
20407 CAGCTCATTTGAGCTCAATT
1 CAGCTCATTCAAGCTCAATT
20427 CAGCTCATTCAAGCTCAATT
1 CAGCTCATTCAAGCTCAATT
20447 TAGTTTCTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.28, G:0.12, T:0.33
Consensus pattern (20 bp):
CAGCTCATTCAAGCTCAATT
Found at i:21915 original size:12 final size:12
Alignment explanation
Indices: 21898--21922 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
21888 CCTTATACAC
21898 ATTACACATTGA
1 ATTACACATTGA
21910 ATTACACATTGA
1 ATTACACATTGA
21922 A
1 A
21923 ATCAGATTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.16, G:0.08, T:0.32
Consensus pattern (12 bp):
ATTACACATTGA
Found at i:27070 original size:40 final size:40
Alignment explanation
Indices: 26987--27249 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
26977 TTGAATGCTG
* * * * * *
26987 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
27027 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
27067 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
27107 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* *
27147 TCCGGGTTAAGTCCCGAAGGCAGTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
27187 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
27226 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
27250 TGAACGAGGA
Statistics
Matches: 199, Mismatches: 21, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 35 0.18
40 156 0.78
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:27269 original size:79 final size:80
Alignment explanation
Indices: 27026--27284 Score: 238
Period size: 80 Copynumber: 3.3 Consensus size: 80
27016 AAGTGAATAT
* * * * * * *
27026 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAG
** * *
27090 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
27106 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCAGT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
** ** *
27171 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * * *
27186 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
* *
27250 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
27265 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
27285 TACGTGATTT
Statistics
Matches: 154, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
78 14 0.09
79 47 0.31
80 93 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.25
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
CGAACGAGGAGCTAA
Found at i:34581 original size:40 final size:40
Alignment explanation
Indices: 34498--34760 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
34488 TTGAATGCTG
* * * * * *
34498 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
34538 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
34578 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
34618 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* *
34658 TCCGGGTTAAGTCCCGAAGGCAGTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
34698 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
34737 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
34761 TGAACGAGGA
Statistics
Matches: 199, Mismatches: 21, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 35 0.18
40 156 0.78
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:34780 original size:79 final size:80
Alignment explanation
Indices: 34537--34795 Score: 238
Period size: 80 Copynumber: 3.3 Consensus size: 80
34527 AAGTGAATAT
* * * * * * *
34537 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAG
** * *
34601 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
34617 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCAGT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
** ** *
34682 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * * *
34697 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
* *
34761 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
34776 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
34796 TACGTGATTT
Statistics
Matches: 154, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
78 14 0.09
79 47 0.31
80 93 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.25
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
CGAACGAGGAGCTAA
Found at i:39417 original size:47 final size:45
Alignment explanation
Indices: 39304--39528 Score: 158
Period size: 46 Copynumber: 4.9 Consensus size: 45
39294 AGGTTATTGT
*
39304 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCATATTATGA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGG-CATATGATGA
* * *
39350 GAGCCAGTGTAAGACCATGTCTTGGATATGGCATCGGCAT-TGA-GA
1 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATATGATGA
* *
39395 CGAGTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCAAGACAT-A
1 -GA--GCTAGTGTAAGACATGTCTGGGACATGCATCGGCAT-ATG--ATGA
* *** * *
39445 -AGCTAGTGTAAGACAAGTCTCAAACATGCATCGAC-TACGA-GA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCATATGATGA
* *
39487 G-GTGTCAGTGTAAGACCATGTCTGGGACAATGCATCGACATA
1 GAG-CT-AGTGTAAGA-CATGTCTGGGAC-ATGCATCGGCATA
39529 GATATGCCAG
Statistics
Matches: 142, Mismatches: 20, Indels: 33
0.73 0.10 0.17
Matches are distributed among these distances:
42 3 0.02
43 1 0.01
44 11 0.08
45 11 0.08
46 65 0.46
47 29 0.20
48 20 0.14
50 2 0.01
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.23
Consensus pattern (45 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCATATGATGA
Done.