Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold540
Parameters: 2 7 7 80 10 50 1000
Length:  39918

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6193--6237
18
2.5
18
82
13
65
6
15
4
73
1.21
7148--7174
14
1.9
14
100
0
54
25
7
0
66
1.17
7211--7240
12
2.5
12
94
0
51
13
3
6
76
1.11
10958--11001
23
1.9
23
86
9
63
9
18
4
68
1.34
13944--13973
12
2.4
13
94
5
53
76
6
3
13
1.11
14965--15009
18
2.5
17
82
13
54
73
4
15
6
1.21
23273--23325
23
2.4
22
76
20
56
9
18
1
69
1.25
28290--28338
10
4.6
11
85
7
66
81
6
0
12
0.86
28290--28338
21
2.4
21
96
3
91
81
6
0
12
0.86
29811--29856
20
2.3
20
84
0
56
23
19
17
39
1.92
29803--29876
30
2.5
30
84
8
80
22
20
18
37
1.94
31462--31500
12
3.3
12
82
7
53
74
5
5
15
1.17
31479--31539
14
4.6
13
76
17
56
73
6
13
6
1.22
31480--31558
28
2.8
28
83
12
92
70
5
13
10
1.30
32573--32602
11
2.7
11
94
0
51
83
3
13
0
0.77
32573--32681
6
18.0
6
71
8
78
72
2
18
6
1.18
32577--32681
18
5.7
18
73
7
86
72
2
18
6
1.19
32639--32687
14
3.5
15
75
16
59
75
0
18
6
1.00
32559--32677
12
10.0
12
72
19
72
70
2
18
8
1.24
32703--32765
33
1.9
33
84
12
85
53
6
26
12
1.62
34542--34595
20
2.7
20
82
0
63
24
20
18
37
1.94
34542--34615
30
2.5
30
86
8
98
21
20
18
39
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34542--34606
20
3.2
20
71
16
53
23
21
16
38
1.93
38308--38356
20
2.5
20
86
6
64
32
2
12
53
1.50
39216--39259
22
2.0
22
86
8
63
29
27
6
36
1.83

Tables:   1

The End!