Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold851
Parameters: 2 7 7 80 10 50 1000
Length:  185800

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13909--13952
22
2.0
22
90
0
70
27
36
4
31
1.77
18508--18563
30
1.9
30
86
13
82
60
7
14
17
1.55
31839--31901
21
3.0
21
86
6
74
34
33
3
28
1.73
31839--31901
10
5.9
11
73
10
51
34
33
3
28
1.73
32212--32258
25
1.9
24
86
4
67
82
2
4
10
0.88
37556--37613
10
5.7
10
76
11
64
29
27
13
29
1.94
37556--37616
20
3.0
20
83
9
79
27
26
13
32
1.93
40559--40605
23
2.1
23
84
7
62
51
12
4
31
1.59
41959--42011
23
2.4
22
75
9
54
9
18
1
69
1.25
42004--42043
18
2.2
18
86
0
53
7
25
2
65
1.32
44672--44721
21
2.3
21
82
3
55
64
2
22
12
1.37
47841--48135
99
3.0
98
91
3
452
26
21
13
37
1.91
48354--48415
22
2.6
24
90
10
92
14
14
22
48
1.80
57197--57249
18
2.9
18
75
13
54
7
24
0
67
1.16
58345--58389
12
3.7
12
82
5
63
73
8
2
15
1.18
58345--58389
13
3.5
13
84
3
65
73
8
2
15
1.18
58345--58394
25
2.0
26
96
4
93
66
8
6
20
1.40
64335--65982
835
2.0
835
99
0
3278
35
16
15
32
1.90
73403--73465
21
3.0
21
88
2
81
33
31
4
30
1.78
80815--80854
18
2.2
18
86
4
53
12
27
0
60
1.33
80926--80986
18
3.4
17
80
11
59
8
19
3
68
1.29
81906--81953
13
3.7
13
91
5
71
18
12
2
66
1.33
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
81906--81954
12
3.8
12
89
5
62
20
12
2
65
1.35
81991--82033
10
3.9
11
87
9
61
16
2
9
72
1.21
81991--82034
12
3.9
12
88
8
58
15
4
9
70
1.30
93681--93798
55
2.1
55
84
6
159
25
22
13
38
1.90
94422--94476
20
2.8
20
88
0
83
29
16
29
25
1.97
97925--97959
18
1.9
18
88
11
54
22
20
0
57
1.41
110100--110132
12
3.0
11
87
12
50
78
0
0
21
0.75
112826--112869
22
2.0
22
95
0
79
34
4
36
25
1.76
118960--119020
12
5.1
12
93
0
104
72
9
1
16
1.19
138486--138543
10
5.7
10
76
11
64
29
27
13
29
1.94
138486--138546
20
3.0
20
83
9
79
27
26
13
32
1.93
139905--139951
13
3.4
13
78
16
58
74
4
4
17
1.14
139944--139993
16
3.5
15
80
20
54
72
6
16
6
1.25
139944--140015
30
2.6
28
81
12
85
69
5
15
9
1.34
140884--140918
18
1.9
18
88
11
54
57
0
20
22
1.41
142989--143046
10
5.7
10
76
11
64
29
27
13
29
1.94
142989--143049
20
3.0
20
83
9
79
27
26
13
32
1.93
148921--149050
6
21.5
6
66
7
66
68
2
20
8
1.27
148923--149005
18
4.4
18
75
11
76
67
3
20
8
1.33
149011--149048
13
2.8
13
82
17
51
73
0
18
7
1.06
149012--149062
21
2.4
21
74
6
50
74
1
17
5
1.11
149389--149440
4
14.0
4
74
22
51
76
1
1
19
0.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
154520--154728
105
2.0
105
100
0
418
35
22
19
22
1.96
155065--155096
4
8.0
4
100
0
64
25
0
0
75
0.81
164863--165070
104
2.0
105
98
0
400
35
22
19
22
1.96
165400--165448
4
12.2
4
89
6
73
24
2
0
73
0.94
169205--169233
12
2.3
13
94
5
51
24
0
3
72
1.00
183115--183150
17
2.1
17
94
0
63
86
5
0
8
0.72
183186--183224
14
2.7
15
96
4
71
61
2
12
23
1.43
184147--184191
18
2.5
17
82
13
54
73
2
13
11
1.19

Tables:   1

The End!