Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1657
Parameters: 2 7 7 80 10 50 1000
Length:  128431

Tables:   1   

This is table  1  of  1  ( 64 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
725--776
15
3.6
14
92
5
77
63
5
11
19
1.47
724--777
14
3.6
14
87
7
72
64
5
11
18
1.44
3329--3394
18
3.5
18
69
15
53
65
1
25
7
1.28
3330--3381
27
1.9
27
84
0
68
65
1
25
7
1.30
12867--12914
25
1.9
25
86
0
69
10
4
4
81
0.97
12886--12914
15
1.9
15
100
0
58
10
0
6
82
0.83
13227--13289
21
3.0
21
86
6
83
31
3
31
33
1.74
13238--13270
11
3.1
11
82
8
50
33
0
36
30
1.58
15167--15239
12
5.8
12
73
12
56
72
5
8
13
1.25
15167--15252
40
2.2
39
85
6
111
73
5
9
11
1.25
20245--20298
20
2.7
20
82
0
63
24
20
18
37
1.94
20245--20318
30
2.5
30
86
8
98
21
20
18
39
1.93
20245--20309
20
3.2
20
71
16
53
23
21
16
38
1.93
21902--21934
12
2.8
12
90
0
57
78
6
6
9
1.08
21902--21947
12
3.7
13
81
13
53
80
4
4
10
0.99
24223--24256
12
2.8
12
95
4
59
79
0
8
11
0.94
24223--24260
14
2.9
13
92
7
60
73
0
10
15
1.09
26483--26527
23
1.9
24
86
4
65
60
4
22
13
1.51
29119--29162
20
2.2
20
91
0
70
22
9
36
31
1.86
30834--30939
48
2.2
48
85
9
137
14
24
1
59
1.45
35726--35847
18
6.6
18
76
8
102
70
4
18
7
1.27
35722--35847
6
20.7
6
70
5
83
70
3
18
7
1.26
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35808--35845
13
2.8
13
82
17
51
73
0
18
7
1.06
35809--35859
21
2.4
21
74
6
50
74
1
17
5
1.11
35862--35924
33
1.9
33
84
12
85
55
6
25
12
1.60
37699--37752
20
2.7
20
82
0
63
24
20
18
37
1.94
37699--37772
30
2.5
30
86
8
98
21
20
18
39
1.93
37699--37763
20
3.2
20
71
16
53
23
21
16
38
1.93
42460--42522
21
3.0
21
88
2
90
30
3
33
33
1.74
43794--43845
14
3.8
13
87
12
77
21
9
0
69
1.17
43794--43848
28
2.0
28
96
0
101
23
10
0
65
1.24
43888--43921
11
3.0
11
83
8
50
20
2
5
70
1.21
48195--48241
23
2.1
23
84
7
62
51
12
4
31
1.59
49580--49606
4
6.8
4
100
0
54
77
0
0
22
0.76
55004--55080
30
2.6
30
97
0
145
55
12
5
25
1.58
57230--57287
24
2.4
25
80
8
66
17
32
29
20
1.95
60500--60524
10
2.5
10
100
0
50
28
12
32
28
1.92
63477--63527
23
2.3
23
83
10
61
7
13
9
68
1.38
63553--63596
14
3.1
14
81
12
63
2
22
0
75
0.92
65576--65626
13
4.0
13
87
5
68
78
3
3
13
1.03
65580--65629
25
2.0
25
92
0
82
78
2
6
14
1.03
65581--65629
12
4.0
12
89
5
71
77
2
6
14
1.05
73588--73612
12
2.1
12
100
0
50
76
8
0
16
1.02
74695--74808
6
18.5
6
68
10
61
71
4
17
6
1.23
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
74684--74824
15
9.2
15
70
17
60
70
3
17
7
1.25
74681--74800
12
10.0
12
68
19
54
70
3
18
8
1.27
75913--75959
20
2.3
20
85
0
67
29
36
12
21
1.91
85327--85433
56
1.9
56
86
3
153
25
21
12
41
1.87
86057--86111
20
2.8
20
88
0
83
29
16
29
25
1.97
87513--87559
23
2.1
23
84
7
62
51
12
4
31
1.59
92209--92233
11
2.3
11
100
0
50
76
8
0
16
1.02
92226--92283
26
2.2
25
82
14
73
74
5
15
5
1.18
93317--93346
11
2.7
11
94
0
51
83
3
13
0
0.77
93317--93423
6
17.7
6
70
8
74
71
2
18
6
1.20
93321--93423
18
5.6
18
73
6
82
71
2
18
6
1.20
93384--93421
13
2.8
13
82
17
51
73
0
18
7
1.06
93329--93435
24
4.9
21
68
20
51
71
2
19
6
1.21
93438--93500
33
1.9
33
84
12
85
53
6
26
12
1.62
99626--99663
17
2.2
18
85
4
51
63
2
23
10
1.39
103568--103632
20
3.3
19
73
16
51
38
16
21
23
1.93
105117--105157
15
2.7
15
100
0
82
17
12
4
65
1.42
106211--106257
23
2.1
23
84
7
62
51
12
4
31
1.59
122023--122057
18
1.9
18
88
11
54
22
20
0
57
1.41
128177--128234
1
58.0
1
100
0
116
0
0
0
100
0.00

Tables:   1

The End!