Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1760
Parameters: 2 7 7 80 10 50 1000
Length:  115295

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4592--4662
15
4.7
14
77
16
54
74
2
19
2
1.07
4592--4646
5
10.6
5
82
5
65
76
3
20
0
0.94
6827--6923
30
3.2
30
74
8
108
27
25
17
28
1.98
9427--9458
11
2.6
13
90
9
50
6
6
6
81
0.99
17245--17341
30
3.2
30
72
8
99
28
16
26
27
1.97
19656--19688
11
3.0
11
91
8
50
15
3
9
72
1.21
21409--21505
30
3.2
30
74
8
108
28
17
25
27
1.98
21892--21970
41
2.0
39
85
9
106
72
5
10
12
1.27
21921--21974
14
4.1
14
80
7
60
74
7
9
9
1.23
24204--24245
17
2.4
18
80
7
52
57
4
23
14
1.56
28582--28699
55
2.1
55
84
6
159
26
21
13
38
1.90
29323--29377
20
2.8
20
88
0
83
29
14
29
27
1.95
40510--40727
121
1.8
119
97
2
418
48
11
6
34
1.64
40786--40829
20
2.2
20
91
0
70
22
9
36
31
1.86
43779--43845
21
3.1
21
82
4
71
34
32
2
29
1.73
44244--44349
48
2.2
48
85
9
137
14
24
1
59
1.45
45437--45492
11
4.7
11
79
14
58
16
8
3
71
1.25
46681--46803
58
2.2
56
82
12
141
32
10
13
43
1.79
50308--50332
9
2.8
9
100
0
50
84
8
0
8
0.79
51349--51393
24
1.9
23
86
13
65
71
2
17
8
1.23
51440--51475
18
1.9
19
88
5
56
52
0
22
25
1.47
57119--57179
10
5.9
10
84
5
68
78
3
6
11
1.05
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57122--57179
31
1.9
30
92
3
98
81
3
5
10
0.97
58674--58720
20
2.3
20
81
0
58
29
34
12
23
1.92
60294--60430
70
2.0
70
95
0
247
27
25
12
35
1.92
64642--64674
11
2.7
13
90
9
52
78
6
6
9
1.08
68096--68137
17
2.4
18
80
7
52
57
4
23
14
1.56
71163--71210
20
2.4
20
67
0
51
33
18
27
20
1.96
76625--76669
14
3.1
14
87
3
63
73
2
22
2
1.05
76625--76675
14
3.5
15
83
2
61
74
1
21
1
1.02
79502--79532
11
2.7
11
95
5
53
83
6
3
6
0.88
83451--83503
23
2.4
22
76
20
56
9
18
1
69
1.25
86541--86575
18
2.0
18
88
5
54
60
0
25
14
1.35
96232--96293
10
5.9
10
74
10
52
33
32
3
30
1.74
96232--96294
21
3.0
21
88
2
90
33
33
3
30
1.74
99353--99397
14
3.1
14
87
3
63
2
22
2
73
1.05
101210--101264
20
2.8
20
94
0
92
29
29
14
27
1.95
110457--110496
11
3.6
11
93
0
62
75
10
2
12
1.15
110539--110594
15
3.9
15
86
13
91
66
0
12
21
1.25
110539--110593
27
2.0
28
96
3
103
65
0
12
21
1.26

Tables:   1

The End!