Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 1 of 362
Found at i:6912 original size:30 final size:30
Alignment explanation
Indices: 6878--6937 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
6868 TGTTTACAGA
*
6878 AAGTAAAATTAATTTTACTCAGACATCAGT
1 AAGTAAAATTAATTTTACTCAGAAATCAGT
6908 AAGTAAAATTAATTTTACTCAGAAATCAGT
1 AAGTAAAATTAATTTTACTCAGAAATCAGT
6938 CGCAATTCAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.45, C:0.12, G:0.10, T:0.33
Consensus pattern (30 bp):
AAGTAAAATTAATTTTACTCAGAAATCAGT
Found at i:13611 original size:27 final size:27
Alignment explanation
Indices: 13573--13650 Score: 138
Period size: 27 Copynumber: 2.9 Consensus size: 27
13563 AAGAATTATG
13573 CCCTAGTGTACTTACATCAGCATAATA
1 CCCTAGTGTACTTACATCAGCATAATA
13600 CCCTAGTGTACTTACATCAGCATAATA
1 CCCTAGTGTACTTACATCAGCATAATA
* *
13627 CCCTAGTGGACTTACATCAACATA
1 CCCTAGTGTACTTACATCAGCATA
13651 TCCAAAAGTA
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 49 1.00
ACGTcount: A:0.33, C:0.27, G:0.12, T:0.28
Consensus pattern (27 bp):
CCCTAGTGTACTTACATCAGCATAATA
Found at i:29171 original size:18 final size:18
Alignment explanation
Indices: 29148--29184 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
29138 GATTGATAGG
29148 TTTGCTCATGTCTTTGAT
1 TTTGCTCATGTCTTTGAT
29166 TTTGCTCATGTCTTTGAT
1 TTTGCTCATGTCTTTGAT
29184 T
1 T
29185 CAATTTCGTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.11, C:0.16, G:0.16, T:0.57
Consensus pattern (18 bp):
TTTGCTCATGTCTTTGAT
Found at i:35759 original size:20 final size:20
Alignment explanation
Indices: 35736--35773 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
35726 TATGTTAGAA
35736 ATGTTAT-GTTTTAGTTATTT
1 ATGTTATCGTTTT-GTTATTT
35756 ATGTTATCGTTTTGTTAT
1 ATGTTATCGTTTTGTTAT
35774 GAAGTGGTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.18, C:0.03, G:0.16, T:0.63
Consensus pattern (20 bp):
ATGTTATCGTTTTGTTATTT
Found at i:59132 original size:21 final size:21
Alignment explanation
Indices: 59106--59146 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
59096 AGACGAGCAA
* *
59106 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
59127 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
59147 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:72081 original size:16 final size:16
Alignment explanation
Indices: 72045--72091 Score: 69
Period size: 16 Copynumber: 3.0 Consensus size: 16
72035 ATTTTTAAAA
*
72045 ATTTTAAAAACATTTT
1 ATTTTAAAAATATTTT
*
72061 A-TTTAATAATATTTT
1 ATTTTAAAAATATTTT
72076 ATTTTAAAAATATTTT
1 ATTTTAAAAATATTTT
72092 TTATCTCAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
15 13 0.48
16 14 0.52
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (16 bp):
ATTTTAAAAATATTTT
Found at i:74389 original size:20 final size:20
Alignment explanation
Indices: 74366--74415 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
74356 AAATCTAAAT
*
74366 TAAAATATTAAAATTCAAGA
1 TAAAATACTAAAATTCAAGA
* *
74386 TAAAATCCTGAAATTCAAGA
1 TAAAATACTAAAATTCAAGA
74406 TAAGAATACT
1 TAA-AATACT
74416 GATGTGACAT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
20 20 0.80
21 5 0.20
ACGTcount: A:0.54, C:0.10, G:0.08, T:0.28
Consensus pattern (20 bp):
TAAAATACTAAAATTCAAGA
Found at i:100833 original size:23 final size:27
Alignment explanation
Indices: 100785--100838 Score: 80
Period size: 23 Copynumber: 2.1 Consensus size: 27
100775 CATAGCAATA
100785 AAAAATTATATAATAAATAAATCTATT
1 AAAAATTATATAATAAATAAATCTATT
100812 AAAAATT-TAT-AT-AA-AAATCTATT
1 AAAAATTATATAATAAATAAATCTATT
100835 AAAA
1 AAAA
100839 TGTGTTGTGT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
23 13 0.48
24 2 0.07
25 2 0.07
26 3 0.11
27 7 0.26
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.35
Consensus pattern (27 bp):
AAAAATTATATAATAAATAAATCTATT
Found at i:100837 original size:11 final size:11
Alignment explanation
Indices: 100803--100838 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
100793 TATAATAAAT
100803 AAATCTATTAA
1 AAATCTATTAA
*
100814 AAATTTATATAA
1 AAATCTAT-TAA
100826 AAATCTATTAA
1 AAATCTATTAA
100837 AA
1 AA
100839 TGTGTTGTGT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
11 12 0.55
12 10 0.45
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.36
Consensus pattern (11 bp):
AAATCTATTAA
Found at i:108010 original size:6 final size:6
Alignment explanation
Indices: 107999--108024 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
107989 AGTTGTAAAG
107999 TTTTAT TTTTAT TTTTAT TTTTAT TT
1 TTTTAT TTTTAT TTTTAT TTTTAT TT
108025 ATTTATTTAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTAT
Found at i:111787 original size:6 final size:6
Alignment explanation
Indices: 111776--111801 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
111766 AGTTGTAAAG
111776 TTTTAT TTTTAT TTTTAT TTTTAT TT
1 TTTTAT TTTTAT TTTTAT TTTTAT TT
111802 ATTTATTTAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTAT
Found at i:117068 original size:2 final size:2
Alignment explanation
Indices: 117061--117101 Score: 57
Period size: 2 Copynumber: 21.0 Consensus size: 2
117051 ATGAACAAAG
* *
117061 GA GA GA GA GA GA GA GA GA GA GA GA GA AA GA GC GA GA -A GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
117102 CGGGCGTATG
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
1 1 0.03
2 33 0.97
ACGTcount: A:0.51, C:0.02, G:0.46, T:0.00
Consensus pattern (2 bp):
GA
Found at i:121002 original size:28 final size:28
Alignment explanation
Indices: 120947--121002 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
120937 ATTTAAAAAA
* * *
120947 TATAATAATTTATTTGATTTTTTAATTT
1 TATAAAAAATTATTTGATTTTTCAATTT
* *
120975 TATAAAAAATTATTTTATTTTTCCATTT
1 TATAAAAAATTATTTGATTTTTCAATTT
121003 AATTTTTAAT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.34, C:0.04, G:0.02, T:0.61
Consensus pattern (28 bp):
TATAAAAAATTATTTGATTTTTCAATTT
Found at i:122708 original size:15 final size:15
Alignment explanation
Indices: 122674--122706 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
122664 GAAAACTTAT
122674 TAAACAATGAAAAAA
1 TAAACAATGAAAAAA
*
122689 TAAACAAT-AAAATA
1 TAAACAATGAAAAAA
122703 TAAA
1 TAAA
122707 ACTTAAGACA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 9 0.53
15 8 0.47
ACGTcount: A:0.73, C:0.06, G:0.03, T:0.18
Consensus pattern (15 bp):
TAAACAATGAAAAAA
Found at i:129989 original size:6 final size:6
Alignment explanation
Indices: 129971--130002 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
129961 GTTTCTGGTC
*
129971 CCAGTT CCTGTT CCAGTT CCAGTT CCAGTT CC
1 CCAGTT CCAGTT CCAGTT CCAGTT CCAGTT CC
130003 GGTATTGGTT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.12, C:0.38, G:0.16, T:0.34
Consensus pattern (6 bp):
CCAGTT
Found at i:134724 original size:18 final size:18
Alignment explanation
Indices: 134684--134732 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 18
134674 ATGGTGCTGG
134684 TGATGATGATGATGAAGA
1 TGATGATGATGATGAAGA
* **
134702 CGATGATGATGATGAATT
1 TGATGATGATGATGAAGA
*
134720 TGATGATGCTGAT
1 TGATGATGATGAT
134733 TCAGGAGCAG
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.33, C:0.04, G:0.31, T:0.33
Consensus pattern (18 bp):
TGATGATGATGATGAAGA
Found at i:149488 original size:17 final size:18
Alignment explanation
Indices: 149466--149504 Score: 71
Period size: 17 Copynumber: 2.2 Consensus size: 18
149456 AAAATTGTAA
149466 AAAATATTTAAAAAATT-
1 AAAATATTTAAAAAATTC
149483 AAAATATTTAAAAAATTC
1 AAAATATTTAAAAAATTC
149501 AAAA
1 AAAA
149505 ATAATAATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 17 0.81
18 4 0.19
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.31
Consensus pattern (18 bp):
AAAATATTTAAAAAATTC
Found at i:149504 original size:9 final size:9
Alignment explanation
Indices: 149454--149505 Score: 52
Period size: 9 Copynumber: 5.6 Consensus size: 9
149444 AAAATTCTAG
149454 AAAAAATTGT
1 AAAAAATT-T
149464 AAAAAATATTT
1 -AAAAA-ATTT
149475 AAAAAA-TT
1 AAAAAATTT
*
149483 AAAATATTT
1 AAAAAATTT
*
149492 AAAAAATTC
1 AAAAAATTT
149501 AAAAA
1 AAAAA
149506 TAATAATTTT
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
8 7 0.19
9 15 0.42
10 5 0.14
11 6 0.17
12 3 0.08
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.29
Consensus pattern (9 bp):
AAAAAATTT
Found at i:156985 original size:31 final size:31
Alignment explanation
Indices: 156916--156990 Score: 84
Period size: 31 Copynumber: 2.5 Consensus size: 31
156906 TAATGTAAAT
*
156916 ATTAAAAA-AATATAAATTTATTAAATATTGA
1 ATTAAAAATAATATAAATTTATTAAAAATT-A
*
156947 ATT-AAAATAATATAAATTTTTTTAAAAATT-
1 ATTAAAAATAATATAAA-TTTATTAAAAATTA
*
156977 TTTAAAAATAATAT
1 ATTAAAAATAATAT
156991 TTATAAACCT
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
30 6 0.16
31 21 0.55
32 11 0.29
ACGTcount: A:0.56, C:0.00, G:0.01, T:0.43
Consensus pattern (31 bp):
ATTAAAAATAATATAAATTTATTAAAAATTA
Found at i:162470 original size:21 final size:21
Alignment explanation
Indices: 162445--162484 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
162435 AAAATTTATT
162445 TTTTAATATTATTTAATAAAA
1 TTTTAATATTATTTAATAAAA
* *
162466 TTTTAATGTTTTTTAATAA
1 TTTTAATATTATTTAATAA
162485 CCACTTCTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (21 bp):
TTTTAATATTATTTAATAAAA
Found at i:165346 original size:29 final size:29
Alignment explanation
Indices: 165314--165377 Score: 78
Period size: 29 Copynumber: 2.2 Consensus size: 29
165304 TAGTCCCTTT
* *
165314 TATTTTAT-TTTTCTTTCAATTTTGCCCTA
1 TATTTTATGTTTTATTTCAATTTAGCCC-A
*
165343 TATTTT-TGTTTTATTTCGATTTAGCCCA
1 TATTTTATGTTTTATTTCAATTTAGCCCA
165371 TATTTTA
1 TATTTTA
165378 GCAATTTTAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
28 8 0.27
29 22 0.73
ACGTcount: A:0.19, C:0.14, G:0.06, T:0.61
Consensus pattern (29 bp):
TATTTTATGTTTTATTTCAATTTAGCCCA
Found at i:165397 original size:3 final size:3
Alignment explanation
Indices: 165389--165469 Score: 85
Period size: 3 Copynumber: 27.3 Consensus size: 3
165379 CAATTTTATG
* *
165389 TTA TTA TTA TTA TTA TTA TTA TTA TT- TTAA ATA TTA TTA TTA GT-
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA
* ** *
165433 TTA CTA TTA TTA TTA TGG TTA TTA TTA TTA CTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
165470 CGTTAGTATT
Statistics
Matches: 63, Mismatches: 12, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
2 3 0.05
3 59 0.94
4 1 0.02
ACGTcount: A:0.32, C:0.02, G:0.04, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:167087 original size:31 final size:30
Alignment explanation
Indices: 167052--167113 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 30
167042 AATATTTTTA
* *
167052 AATAAATACAATTAAATTAAAATTAAAGTTT
1 AATAAATACAATTAAA-GAAAATTAAAATTT
* *
167083 AATAAATATAATTATAGAAAATTAAAATTT
1 AATAAATACAATTAAAGAAAATTAAAATTT
167113 A
1 A
167114 TATCTCAAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
30 13 0.48
31 14 0.52
ACGTcount: A:0.60, C:0.02, G:0.03, T:0.35
Consensus pattern (30 bp):
AATAAATACAATTAAAGAAAATTAAAATTT
Found at i:167153 original size:29 final size:27
Alignment explanation
Indices: 167070--167153 Score: 78
Period size: 31 Copynumber: 2.9 Consensus size: 27
167060 CAATTAAATT
*
167070 AAAATTAAAGTTTAATAAATATAATTATAG
1 AAAATTAAAATTT-AT--ATATAATTATAG
*
167100 AAAATTAAAATTTATATCTCAAATTATAG
1 AAAATTAAAATTTATATAT--AATTATAG
*
167129 ATTAAATTAAAATTTATGTATAATT
1 A--AAATTAAAATTTATATATAATT
167154 TATAAGTGAT
Statistics
Matches: 46, Mismatches: 4, Indels: 9
0.78 0.07 0.15
Matches are distributed among these distances:
27 3 0.07
29 15 0.33
30 12 0.26
31 16 0.35
ACGTcount: A:0.52, C:0.02, G:0.05, T:0.40
Consensus pattern (27 bp):
AAAATTAAAATTTATATATAATTATAG
Found at i:167787 original size:31 final size:31
Alignment explanation
Indices: 167752--167818 Score: 80
Period size: 31 Copynumber: 2.2 Consensus size: 31
167742 AAAAAACCTT
167752 AATAGCACAATGACTTAAATAAAATATTTCG
1 AATAGCACAATGACTTAAATAAAATATTTCG
*** * * *
167783 AATAGTTTATTGACTTAAATAAAATTTTTTG
1 AATAGCACAATGACTTAAATAAAATATTTCG
167814 AATAG
1 AATAG
167819 TTCAATGATC
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.45, C:0.07, G:0.10, T:0.37
Consensus pattern (31 bp):
AATAGCACAATGACTTAAATAAAATATTTCG
Found at i:167819 original size:31 final size:31
Alignment explanation
Indices: 167762--167820 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
167752 AATAGCACAA
167762 TGACTTAAATAAAATATTTCGAATAGTTTAT
1 TGACTTAAATAAAATATTTCGAATAGTTTAT
* *
167793 TGACTTAAATAAAATTTTTTGAATAGTT
1 TGACTTAAATAAAATATTTCGAATAGTT
167821 CAATGATCAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.41, C:0.05, G:0.10, T:0.44
Consensus pattern (31 bp):
TGACTTAAATAAAATATTTCGAATAGTTTAT
Found at i:170950 original size:28 final size:29
Alignment explanation
Indices: 170911--170971 Score: 72
Period size: 28 Copynumber: 2.1 Consensus size: 29
170901 TTTAATGTAG
* *
170911 AAAATATTAAATTAATTTTATTTTAT-TA
1 AAAATATTAAATAAATTATATTTTATATA
*
170939 AAAAT-TTGAAATAAATTATATTTTTTATA
1 AAAATATT-AAATAAATTATATTTTATATA
170968 AAAA
1 AAAA
170972 AATGAGATAT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
27 2 0.07
28 20 0.71
29 6 0.21
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.48
Consensus pattern (29 bp):
AAAATATTAAATAAATTATATTTTATATA
Found at i:175973 original size:17 final size:17
Alignment explanation
Indices: 175951--175984 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
175941 GGTGGTAGGA
175951 GGAAACAGATCCTCAAC
1 GGAAACAGATCCTCAAC
175968 GGAAACAGATCCTCAAC
1 GGAAACAGATCCTCAAC
175985 TGATTTGATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.29, G:0.18, T:0.12
Consensus pattern (17 bp):
GGAAACAGATCCTCAAC
Found at i:181291 original size:15 final size:16
Alignment explanation
Indices: 181266--181295 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
181256 TCCTTCACAT
181266 TTTCAATTTTTATTAA
1 TTTCAATTTTTATTAA
181282 TTTC-ATTTTTATTA
1 TTTCAATTTTTATTA
181296 TTTTTTAGGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.27, C:0.07, G:0.00, T:0.67
Consensus pattern (16 bp):
TTTCAATTTTTATTAA
Found at i:192964 original size:23 final size:23
Alignment explanation
Indices: 192938--192982 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
192928 TATATACTAA
* *
192938 ATATATATTTTTTATTTTTAATC
1 ATATATATATTTTAATTTTAATC
*
192961 ATATTTATATTTTAATTTTAAT
1 ATATATATATTTTAATTTTAAT
192983 TTTAATATAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.64
Consensus pattern (23 bp):
ATATATATATTTTAATTTTAATC
Found at i:206444 original size:18 final size:15
Alignment explanation
Indices: 206399--206441 Score: 77
Period size: 15 Copynumber: 2.9 Consensus size: 15
206389 TGGCACCAAA
206399 AGCTGAGAAGAAGCC
1 AGCTGAGAAGAAGCC
206414 AGCTGAGAAGAAGCC
1 AGCTGAGAAGAAGCC
*
206429 AGCTGAGGAGAAG
1 AGCTGAGAAGAAG
206442 AAGACGGTAG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 27 1.00
ACGTcount: A:0.40, C:0.16, G:0.37, T:0.07
Consensus pattern (15 bp):
AGCTGAGAAGAAGCC
Found at i:209165 original size:33 final size:33
Alignment explanation
Indices: 209123--209185 Score: 117
Period size: 33 Copynumber: 1.9 Consensus size: 33
209113 CAAGATTTGA
*
209123 AGAGTTTATAGCCAATTCACACCAAACTAATGT
1 AGAGTTTATAGCAAATTCACACCAAACTAATGT
209156 AGAGTTTATAGCAAATTCACACCAAACTAA
1 AGAGTTTATAGCAAATTCACACCAAACTAA
209186 CTTGAGACTT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.43, C:0.21, G:0.11, T:0.25
Consensus pattern (33 bp):
AGAGTTTATAGCAAATTCACACCAAACTAATGT
Found at i:212031 original size:246 final size:247
Alignment explanation
Indices: 211591--212042 Score: 595
Period size: 246 Copynumber: 1.8 Consensus size: 247
211581 AAAATACAAC
* **
211591 AGAGAAAGATAAACAAAAAGATTGAAAATAATTTTAATTTTTGGTAATTGTCACTCAACTTAGAT
1 AGAGAAAGATAAACAAAAAGATTGAAAATAATTTTAAGTTTTGGTAACCGTCACTCAACTTAGAT
* * * * * *
211656 TTTTTTTTCCTTTTCTCTTCTTCTAATGTCTAGTTAGGGTTTTTATTGGAGCTGTTTAAATGACA
66 TTTTTTTTCCTTTTCCCTTCTTATAATATCCAATTAGGGTTTTTATCGGAGCTGTTTAAATGACA
* * * **
211721 ACATAGACTCCAGCGTGGCTAGTTAAATGTCGCGTCAATTCACCATTATGTTTGTAACGGAAAAT
131 ACATAGACTCCAACGTGGCTAGTTAAATGCCACGTCAATTCACCATTACATTTGTAACGGAAAAT
*
211786 GGTTAGTAGGACCAAGTTGTTGTTTTTTGAAAATTGAGTGATTGTTGTAAAG
196 AGTTAGTAGGACCAAGTTGTTGTTTTTTGAAAATTGAGTGATTGTTGTAAAG
*
211838 AGAGAAAGATAAACAAAGAA-ATTGAAAATAATTTTAAGTTTTGGTAACCGTCACTCAACTTGGA
1 AGAGAAAGATAAACAAA-AAGATTGAAAATAATTTTAAGTTTTGGTAACCGTCACTCAACTTAGA
* * * * *
211902 -TTTTTTTTCTTTTTCCCTTCTTATACTATCCAATTATGGTTTTTATCGGGGTTGTTTAAATGAC
65 TTTTTTTTTCCTTTTCCCTTCTTATAATATCCAATTAGGGTTTTTATCGGAGCTGTTTAAATGAC
* * * ***** *
211966 AACATAGGCTCCAACGTGGC-CGTTTAAATGCCATGTCAATTTTTTGTTACATTTGTAATGGAAA
130 AACATAGACTCCAACGTGGCTAG-TTAAATGCCACGTCAATTCACCATTACATTTGTAACGGAAA
212030 ATAGTTAGTAGGA
194 ATAGTTAGTAGGA
212043 ATGTTTTGTT
Statistics
Matches: 173, Mismatches: 30, Indels: 5
0.83 0.14 0.02
Matches are distributed among these distances:
245 1 0.01
246 113 0.65
247 57 0.33
248 2 0.01
ACGTcount: A:0.31, C:0.13, G:0.18, T:0.38
Consensus pattern (247 bp):
AGAGAAAGATAAACAAAAAGATTGAAAATAATTTTAAGTTTTGGTAACCGTCACTCAACTTAGAT
TTTTTTTTCCTTTTCCCTTCTTATAATATCCAATTAGGGTTTTTATCGGAGCTGTTTAAATGACA
ACATAGACTCCAACGTGGCTAGTTAAATGCCACGTCAATTCACCATTACATTTGTAACGGAAAAT
AGTTAGTAGGACCAAGTTGTTGTTTTTTGAAAATTGAGTGATTGTTGTAAAG
Found at i:233075 original size:13 final size:13
Alignment explanation
Indices: 233011--233076 Score: 57
Period size: 13 Copynumber: 5.2 Consensus size: 13
233001 TTTTCTATGA
233011 TTTAA-ATTTAAT
1 TTTAATATTTAAT
*
233023 TTCAATATTTAAT
1 TTTAATATTTAAT
* *
233036 TTT-TTAATTAAAT
1 TTTAAT-ATTTAAT
*
233049 ATTTAA-AATTAAT
1 -TTTAATATTTAAT
233062 TTTAATATTTAAT
1 TTTAATATTTAAT
233075 TT
1 TT
233077 GATACTTAAA
Statistics
Matches: 41, Mismatches: 8, Indels: 9
0.71 0.14 0.16
Matches are distributed among these distances:
12 10 0.24
13 28 0.68
14 3 0.07
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.58
Consensus pattern (13 bp):
TTTAATATTTAAT
Found at i:233086 original size:39 final size:39
Alignment explanation
Indices: 233010--233087 Score: 111
Period size: 39 Copynumber: 2.0 Consensus size: 39
233000 TTTTTCTATG
* **
233010 ATTTAAATTTAATTTCAATATTTAATTTTTTAATTAAAT
1 ATTTAAAATTAATTTCAATATTTAATTTGATAATTAAAT
* *
233049 ATTTAAAATTAATTTTAATATTTAATTTGATACTTAAAT
1 ATTTAAAATTAATTTCAATATTTAATTTGATAATTAAAT
233088 TTTTTTATCT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 34 1.00
ACGTcount: A:0.42, C:0.03, G:0.01, T:0.54
Consensus pattern (39 bp):
ATTTAAAATTAATTTCAATATTTAATTTGATAATTAAAT
Found at i:233551 original size:34 final size:34
Alignment explanation
Indices: 233502--233569 Score: 118
Period size: 34 Copynumber: 2.0 Consensus size: 34
233492 TTTTAAAAGT
*
233502 ATAAATAAATCATTTTTTTAACAGAAATAACTAA
1 ATAAATAAATAATTTTTTTAACAGAAATAACTAA
*
233536 ATAAATGAATAATTTTTTTAACAGAAATAACTAA
1 ATAAATAAATAATTTTTTTAACAGAAATAACTAA
233570 TTTATTTTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.53, C:0.07, G:0.04, T:0.35
Consensus pattern (34 bp):
ATAAATAAATAATTTTTTTAACAGAAATAACTAA
Found at i:240629 original size:20 final size:20
Alignment explanation
Indices: 240606--240652 Score: 76
Period size: 21 Copynumber: 2.2 Consensus size: 20
240596 TGAAAATATA
240606 TAATAATATGGAAAAAAAAT
1 TAATAATATGGAAAAAAAAT
240626 TAATTAATATGGAAAAAAAAT
1 TAA-TAATATGGAAAAAAAAT
240647 TGAATA
1 T-AATA
240653 CCAGAATAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
20 3 0.12
21 20 0.80
22 2 0.08
ACGTcount: A:0.62, C:0.00, G:0.11, T:0.28
Consensus pattern (20 bp):
TAATAATATGGAAAAAAAAT
Found at i:243516 original size:27 final size:27
Alignment explanation
Indices: 243468--243561 Score: 111
Period size: 27 Copynumber: 3.5 Consensus size: 27
243458 GCGAGGCTGC
* * * *
243468 CAGATATTATGACGAAGTCACCAGATA
1 CAGATATTGTGGCGGAGCCACCAGATA
243495 CAGATATTGTGGCGGAGCCACCAGA-A
1 CAGATATTGTGGCGGAGCCACCAGATA
*
243521 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCGGAGCCACCAGATA
243548 CAGATAATTGTGGC
1 CAGAT-ATTGTGGC
243562 ATAGCCACTA
Statistics
Matches: 59, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
26 8 0.14
27 49 0.83
28 2 0.03
ACGTcount: A:0.34, C:0.20, G:0.26, T:0.20
Consensus pattern (27 bp):
CAGATATTGTGGCGGAGCCACCAGATA
Found at i:243562 original size:27 final size:26
Alignment explanation
Indices: 243486--243569 Score: 114
Period size: 27 Copynumber: 3.1 Consensus size: 26
243476 ATGACGAAGT
*
243486 CACCAGATACAGATATTGTGGCGGAGC
1 CACCAGAT-CAGATATTGTGGCAGAGC
*
243513 CACCAGAACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAT-TGTGGCAGAGC
*
243540 CACCAGATCAGATAATTGTGGCATAGC
1 CACCAGATCAGAT-ATTGTGGCAGAGC
243567 CAC
1 CAC
243570 TAGGACGCTT
Statistics
Matches: 51, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
26 7 0.14
27 42 0.82
28 2 0.04
ACGTcount: A:0.33, C:0.24, G:0.25, T:0.18
Consensus pattern (26 bp):
CACCAGATCAGATATTGTGGCAGAGC
Found at i:245193 original size:26 final size:26
Alignment explanation
Indices: 245162--245269 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
245152 TGAAATGCCC
*
245162 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
245188 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* * *
245214 ATCATAGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
245240 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
245266 ATCA
1 ATCA
245270 ATTTGGACCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.37, C:0.24, G:0.06, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:246567 original size:19 final size:17
Alignment explanation
Indices: 246537--246579 Score: 86
Period size: 17 Copynumber: 2.5 Consensus size: 17
246527 ATAGGGTAGA
246537 CCGTGTGTCACACACGC
1 CCGTGTGTCACACACGC
246554 CCGTGTGTCACACACGC
1 CCGTGTGTCACACACGC
246571 CCGTGTGTC
1 CCGTGTGTC
246580 TACCCGCTTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.14, C:0.40, G:0.26, T:0.21
Consensus pattern (17 bp):
CCGTGTGTCACACACGC
Found at i:252040 original size:17 final size:17
Alignment explanation
Indices: 252018--252205 Score: 130
Period size: 17 Copynumber: 11.4 Consensus size: 17
252008 CCCAAATCAT
*
252018 CCCACTAACTCTAACAC
1 CCCACTAACTCCAACAC
*
252035 CCCACTAACTCCAACAT
1 CCCACTAACTCCAACAC
*
252052 CCCACTAA----ATCAC
1 CCCACTAACTCCAACAC
252065 CCCACTAACTCCAACAC
1 CCCACTAACTCCAACAC
*
252082 CTCACTAACTCCATTACCCCAC
1 CCCACTAACTCCA--A---CAC
* *
252104 TTGCCACTAACTCCATCAC
1 --CCCACTAACTCCAACAC
*
252123 CCCACTAA----ATCAC
1 CCCACTAACTCCAACAC
*
252136 CCCACTAACTCCAACAT
1 CCCACTAACTCCAACAC
*
252153 CCCACTAA----ATCAC
1 CCCACTAACTCCAACAC
252166 CCCACTAACTCCAACAC
1 CCCACTAACTCCAACAC
**
252183 CCCACTAACTCCATTAC
1 CCCACTAACTCCAACAC
252200 CCCACT
1 CCCACT
252206 TGCCACTAAC
Statistics
Matches: 135, Mismatches: 17, Indels: 38
0.71 0.09 0.20
Matches are distributed among these distances:
13 35 0.26
17 82 0.61
19 4 0.03
22 3 0.02
24 11 0.08
ACGTcount: A:0.33, C:0.48, G:0.01, T:0.18
Consensus pattern (17 bp):
CCCACTAACTCCAACAC
Found at i:252066 original size:30 final size:30
Alignment explanation
Indices: 252032--252089 Score: 100
Period size: 30 Copynumber: 1.9 Consensus size: 30
252022 CTAACTCTAA
252032 CACCCCACTAACTCCAACATCC-CACTAAAT
1 CACCCCACTAACTCCAACA-CCTCACTAAAT
252062 CACCCCACTAACTCCAACACCTCACTAA
1 CACCCCACTAACTCCAACACCTCACTAA
252090 CTCCATTACC
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
29 2 0.07
30 25 0.93
ACGTcount: A:0.36, C:0.48, G:0.00, T:0.16
Consensus pattern (30 bp):
CACCCCACTAACTCCAACACCTCACTAAAT
Found at i:252103 original size:47 final size:47
Alignment explanation
Indices: 252011--252104 Score: 134
Period size: 47 Copynumber: 2.0 Consensus size: 47
252001 AAACATACCC
* * *
252011 AAATCATCCCACTAACTCTAACACCCCACTAACTCCAACATCCCACT
1 AAATCACCCCACTAACTCCAACACCCCACTAACTCCAACACCCCACT
* **
252058 AAATCACCCCACTAACTCCAACACCTCACTAACTCCATTACCCCACT
1 AAATCACCCCACTAACTCCAACACCCCACTAACTCCAACACCCCACT
252105 TGCCACTAAC
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
47 41 1.00
ACGTcount: A:0.35, C:0.46, G:0.00, T:0.19
Consensus pattern (47 bp):
AAATCACCCCACTAACTCCAACACCCCACTAACTCCAACACCCCACT
Found at i:252136 original size:13 final size:13
Alignment explanation
Indices: 252118--252173 Score: 67
Period size: 13 Copynumber: 4.0 Consensus size: 13
252108 CACTAACTCC
252118 ATCACCCCACTAA
1 ATCACCCCACTAA
252131 ATCACCCCACTAA
1 ATCACCCCACTAA
*
252144 CTCCAACATCCCACTAA
1 AT-C-AC--CCCACTAA
252161 ATCACCCCACTAA
1 ATCACCCCACTAA
252174 CTCCAACACC
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
13 22 0.59
14 1 0.03
15 4 0.11
16 1 0.03
17 9 0.24
ACGTcount: A:0.38, C:0.46, G:0.00, T:0.16
Consensus pattern (13 bp):
ATCACCCCACTAA
Found at i:252143 original size:30 final size:30
Alignment explanation
Indices: 252107--252190 Score: 150
Period size: 30 Copynumber: 2.8 Consensus size: 30
252097 ACCCCACTTG
*
252107 CCACTAACTCCATCACCCCACTAAATCACC
1 CCACTAACTCCAACACCCCACTAAATCACC
*
252137 CCACTAACTCCAACATCCCACTAAATCACC
1 CCACTAACTCCAACACCCCACTAAATCACC
252167 CCACTAACTCCAACACCCCACTAA
1 CCACTAACTCCAACACCCCACTAA
252191 CTCCATTACC
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 51 1.00
ACGTcount: A:0.36, C:0.49, G:0.00, T:0.15
Consensus pattern (30 bp):
CCACTAACTCCAACACCCCACTAAATCACC
Found at i:252207 original size:101 final size:101
Alignment explanation
Indices: 252032--252235 Score: 399
Period size: 101 Copynumber: 2.0 Consensus size: 101
252022 CTAACTCTAA
*
252032 CACCCCACTAACTCCAACATCCCACTAAATCACCCCACTAACTCCAACACCTCACTAACTCCATT
1 CACCCCACTAACTCCAACATCCCACTAAATCACCCCACTAACTCCAACACCCCACTAACTCCATT
252097 ACCCCACTTGCCACTAACTCCATCACCCCACTAAAT
66 ACCCCACTTGCCACTAACTCCATCACCCCACTAAAT
252133 CACCCCACTAACTCCAACATCCCACTAAATCACCCCACTAACTCCAACACCCCACTAACTCCATT
1 CACCCCACTAACTCCAACATCCCACTAAATCACCCCACTAACTCCAACACCCCACTAACTCCATT
252198 ACCCCACTTGCCACTAACTCCATCACCCCACTAAAT
66 ACCCCACTTGCCACTAACTCCATCACCCCACTAAAT
252234 CA
1 CA
252236 TTTCACCAAC
Statistics
Matches: 102, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
101 102 1.00
ACGTcount: A:0.33, C:0.48, G:0.01, T:0.18
Consensus pattern (101 bp):
CACCCCACTAACTCCAACATCCCACTAAATCACCCCACTAACTCCAACACCCCACTAACTCCATT
ACCCCACTTGCCACTAACTCCATCACCCCACTAAAT
Found at i:252216 original size:24 final size:24
Alignment explanation
Indices: 252184--252229 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
252174 CTCCAACACC
*
252184 CCACTAACTCCATTACCCCACTTG
1 CCACTAACTCCATCACCCCACTTG
252208 CCACTAACTCCATCACCCCACT
1 CCACTAACTCCATCACCCCACT
252230 AAATCATTTC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.26, C:0.50, G:0.02, T:0.22
Consensus pattern (24 bp):
CCACTAACTCCATCACCCCACTTG
Found at i:252247 original size:101 final size:101
Alignment explanation
Indices: 252032--252259 Score: 384
Period size: 101 Copynumber: 2.3 Consensus size: 101
252022 CTAACTCTAA
* *
252032 CACCCCACTAACTCCAACATCCCACTAAATCACCCCACTAACTCCAACACCTCACTAACTCCATT
1 CACCCCACCAACTCCAACATCCCACTAAATCACCCCACTAACTCCAACACCCCACTAACTCCATT
252097 ACCCCACTTGCCACTAACTCCATCACCCCACTAAAT
66 ACCCCACTTGCCACTAACTCCATCACCCCACTAAAT
*
252133 CACCCCACTAACTCCAACATCCCACTAAATCACCCCACTAACTCCAACACCCCACTAACTCCATT
1 CACCCCACCAACTCCAACATCCCACTAAATCACCCCACTAACTCCAACACCCCACTAACTCCATT
252198 ACCCCACTTGCCACTAACTCCATCACCCCACTAAAT
66 ACCCCACTTGCCACTAACTCCATCACCCCACTAAAT
*** * *
252234 CATTTCACCAACTCCATCACCCCACT
1 CACCCCACCAACTCCAACATCCCACT
252260 TGCCTACAAA
Statistics
Matches: 120, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
101 120 1.00
ACGTcount: A:0.32, C:0.48, G:0.01, T:0.19
Consensus pattern (101 bp):
CACCCCACCAACTCCAACATCCCACTAAATCACCCCACTAACTCCAACACCCCACTAACTCCATT
ACCCCACTTGCCACTAACTCCATCACCCCACTAAAT
Found at i:252806 original size:29 final size:30
Alignment explanation
Indices: 252769--252826 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 30
252759 TATTAACATA
252769 TTATCATCATTTTTAC-TATATTATTATTC
1 TTATCATCATTTTTACTTATATTATTATTC
* * *
252798 TTATTATCATTTTTTCTTATTTTATTATT
1 TTATCATCATTTTTACTTATATTATTATT
252827 AGTACATGAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
29 14 0.56
30 11 0.44
ACGTcount: A:0.24, C:0.10, G:0.00, T:0.66
Consensus pattern (30 bp):
TTATCATCATTTTTACTTATATTATTATTC
Found at i:254431 original size:26 final size:26
Alignment explanation
Indices: 254402--254505 Score: 181
Period size: 26 Copynumber: 4.0 Consensus size: 26
254392 TGGTACAAAT
254402 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
254428 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
254454 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
254480 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
254506 AGATGGGAAT
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 73 1.00
ACGTcount: A:0.33, C:0.08, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:256044 original size:26 final size:26
Alignment explanation
Indices: 255992--256044 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
255982 TTTACAAATT
*
255992 TACCCCTAGGAGATAAATTATCGAAA
1 TACCCCTAGGAGATAAATTACCGAAA
* *
256018 TACCCCTAGG-GTTAAATTGACCTAAA
1 TACCCCTAGGAGATAAATT-ACCGAAA
256044 T
1 T
256045 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.26
Consensus pattern (26 bp):
TACCCCTAGGAGATAAATTACCGAAA
Found at i:258489 original size:68 final size:65
Alignment explanation
Indices: 258373--258624 Score: 219
Period size: 68 Copynumber: 3.8 Consensus size: 65
258363 TACAGATGGT
** * *
258373 ATGTAGCTAGGTCACATGTATGGTGCTGA-GTGCACATCATGTGTACAAGAGAGCTACGAGACAT
1 ATGTAGCTAGGTCACATGGGTGGTGCT-ATGTGTACACCATGTGTACAAGAGAGCTACGAG--A-
258437 TATA
62 TATA
* * *
258441 ATGTAGCTAGGTCGCATGGGTGATGCTATGTGTACACCATGTAG-ACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCACATGGGTGGTGCTATGTGTACACCATGT-GTACAAGAGAGCTACGAGATAT
258505 -
65 A
* * * * * * *
258505 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGATACCATGTAG-ACAAGAGAGCTACGAGA
1 ATGTAGCTAGGTCACATGGGTGGTGCTA--TG-TGTACACCATGT-GTACAAGAGAGCTACGAGA
258569 TA-A
62 TATA
* * * *
258572 AT-TGGCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGTGTACAAGAGAGC
1 ATGTAGCTAGGTCACATGGGTGGTGCTATGTGTACACCATGTGTACAAGAGAGC
258625 CGAACTATAT
Statistics
Matches: 152, Mismatches: 25, Indels: 19
0.78 0.13 0.10
Matches are distributed among these distances:
62 1 0.01
63 18 0.12
64 25 0.16
65 3 0.02
66 23 0.15
67 32 0.21
68 49 0.32
69 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.30, T:0.25
Consensus pattern (65 bp):
ATGTAGCTAGGTCACATGGGTGGTGCTATGTGTACACCATGTGTACAAGAGAGCTACGAGATATA
Found at i:258961 original size:28 final size:28
Alignment explanation
Indices: 258921--259102 Score: 174
Period size: 28 Copynumber: 6.5 Consensus size: 28
258911 AAACGAACGG
*
258921 CACTTAGCGTGCGAAGTATTGAGGATGA
1 CACTTAGTGTGCGAAGTATTGAGGATGA
*
258949 CACTTAGTGTGCGAAGTATTGAGGATGG
1 CACTTAGTGTGCGAAGTATTGAGGATGA
* *
258977 CACTTAGTGTGC-AAGACATCTGA-AATGA
1 CACTTAGTGTGCGAAG-TAT-TGAGGATGA
** * *
259005 CACTTAGTGTATGAAGTATTAATGATGA
1 CACTTAGTGTGCGAAGTATTGAGGATGA
** * * *
259033 CACTT-GTGTGCGAAACATCCGA-AATGG
1 CACTTAGTGTGCGAAGTAT-TGAGGATGA
* *
259060 CACTTAGTGTGCGAAGTATCGAGGATGG
1 CACTTAGTGTGCGAAGTATTGAGGATGA
259088 CACTTAGTGTGCGAA
1 CACTTAGTGTGCGAA
259103 ACATCCGGTA
Statistics
Matches: 126, Mismatches: 21, Indels: 14
0.78 0.13 0.09
Matches are distributed among these distances:
27 25 0.20
28 95 0.75
29 6 0.05
ACGTcount: A:0.30, C:0.15, G:0.29, T:0.27
Consensus pattern (28 bp):
CACTTAGTGTGCGAAGTATTGAGGATGA
Found at i:259008 original size:56 final size:56
Alignment explanation
Indices: 258945--259109 Score: 235
Period size: 56 Copynumber: 3.0 Consensus size: 56
258935 AGTATTGAGG
*
258945 ATGACACTTAGTGTGCGAAGTATTGAGGATGGCACTTAGTGTGC-AAGACATCTGAA
1 ATGACACTTAGTGTGCGAAGTATTGAGGATGGCACTTAGTGTGCGAA-ACATCCGAA
** * * *
259001 ATGACACTTAGTGTATGAAGTATTAATGATGACACTT-GTGTGCGAAACATCCGAA
1 ATGACACTTAGTGTGCGAAGTATTGAGGATGGCACTTAGTGTGCGAAACATCCGAA
* *
259056 ATGGCACTTAGTGTGCGAAGTATCGAGGATGGCACTTAGTGTGCGAAACATCCG
1 ATGACACTTAGTGTGCGAAGTATTGAGGATGGCACTTAGTGTGCGAAACATCCG
259110 GTATAGCACT
Statistics
Matches: 94, Mismatches: 13, Indels: 4
0.85 0.12 0.04
Matches are distributed among these distances:
55 44 0.47
56 50 0.53
ACGTcount: A:0.30, C:0.16, G:0.27, T:0.27
Consensus pattern (56 bp):
ATGACACTTAGTGTGCGAAGTATTGAGGATGGCACTTAGTGTGCGAAACATCCGAA
Found at i:259063 original size:27 final size:29
Alignment explanation
Indices: 259033--259135 Score: 108
Period size: 28 Copynumber: 3.7 Consensus size: 29
259023 TTAATGATGA
259033 CACTT-GTGTGCGAAACATCCGA-AATGG
1 CACTTAGTGTGCGAAACATCCGAGAATGG
** *
259060 CACTTAGTGTGCGAAGTAT-CGAGGATGG
1 CACTTAGTGTGCGAAACATCCGAGAATGG
* *
259088 CACTTAGTGTGCGAAACATCCG-GTATAG
1 CACTTAGTGTGCGAAACATCCGAGAATGG
*
259116 CACTTAGCGTGC-AAGACATC
1 CACTTAGTGTGCGAA-ACATC
259136 GATTGTGCAG
Statistics
Matches: 64, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
27 10 0.16
28 52 0.81
29 2 0.03
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.23
Consensus pattern (29 bp):
CACTTAGTGTGCGAAACATCCGAGAATGG
Found at i:259120 original size:56 final size:55
Alignment explanation
Indices: 258949--259127 Score: 218
Period size: 56 Copynumber: 3.2 Consensus size: 55
258939 TTGAGGATGA
*
258949 CACTTAGTGTGCGAAGTATTGAGGATGGCACTTAGTGTGC-AAGACATCTGAAATG
1 CACTTAGTGTGCGAAGTATTGAGGATGGCACTTAGTGTGCGAA-ACATCCGAAATG
** * * *
259004 ACACTTAGTGTATGAAGTATTAATGATGACACTT-GTGTGCGAAACATCCGAAATGG
1 -CACTTAGTGTGCGAAGTATTGAGGATGGCACTTAGTGTGCGAAACATCCGAAAT-G
* **
259060 CACTTAGTGTGCGAAGTATCGAGGATGGCACTTAGTGTGCGAAACATCCGGTATAG
1 CACTTAGTGTGCGAAGTATTGAGGATGGCACTTAGTGTGCGAAACATCCGAAAT-G
*
259116 CACTTAGCGTGC
1 CACTTAGTGTGC
259128 AAGACATCGA
Statistics
Matches: 104, Mismatches: 16, Indels: 6
0.83 0.13 0.05
Matches are distributed among these distances:
55 43 0.41
56 61 0.59
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.27
Consensus pattern (55 bp):
CACTTAGTGTGCGAAGTATTGAGGATGGCACTTAGTGTGCGAAACATCCGAAATG
Found at i:270410 original size:15 final size:15
Alignment explanation
Indices: 270390--270421 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
270380 ATAAATTCAC
270390 ATTATAAGTAAACCA
1 ATTATAAGTAAACCA
270405 ATTATAAGTAAACCA
1 ATTATAAGTAAACCA
270420 AT
1 AT
270422 CCTTGGCTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.53, C:0.12, G:0.06, T:0.28
Consensus pattern (15 bp):
ATTATAAGTAAACCA
Found at i:277575 original size:23 final size:21
Alignment explanation
Indices: 277537--277585 Score: 57
Period size: 19 Copynumber: 2.4 Consensus size: 21
277527 TATTTTAACA
*
277537 ATTTAAGATTTATTAATT-AT
1 ATTTAAGATTTATTTATTAAT
* *
277557 -TTCAAGATTTATTTTTTAAT
1 ATTTAAGATTTATTTATTAAT
277577 ATTTAAGAT
1 ATTTAAGAT
277586 GAATGTAGAT
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
19 14 0.61
20 2 0.09
21 7 0.30
ACGTcount: A:0.37, C:0.02, G:0.06, T:0.55
Consensus pattern (21 bp):
ATTTAAGATTTATTTATTAAT
Found at i:282206 original size:230 final size:227
Alignment explanation
Indices: 281799--282250 Score: 579
Period size: 230 Copynumber: 2.0 Consensus size: 227
281789 TTTTTTTAAA
* * * * *
281799 TTTATGAAATAGCTTTGAAGTCATCAATCTATGAATCAAAATCGAAATAACTTTTTTTTCGATTT
1 TTTATGAAATAGCTTTGAAGCCACCAATCTATAAATCAAAATCGAAATAACTTTTTCTTCGATAT
* * *
281864 TCGACTTAACTATTAGATCGCCTGAAACTCACTAATTGGTCTTCTTTTTAAAAAAAAAACTTAAC
66 TCGACTTAACCATTAAATCGCCTGAAACTCACTAATAGGTCTTCTTTTTAAAAAAAAAACTTAAC
* * * * * *
281929 AACTCAATGATTTAAATAAAAACGTTCTAATAGTTTAGTAGCTAAAATGAAAATTTTTAAATATT
131 AACTCAATGATTTAAATAAAAACGTTCTAACAGCTCAGTAGCTAAAATAAAAATTGTCAAATATT
* *
281994 TCAGGTCTAAAATAAATTTTTTTGAATATTTTT
196 TCAGATCTAAAAT-AATTTTTTTAAATATTTTT
* * * *
282027 TTTATGAAATAGCTTTTGAAGCCACCAATTTGTAAATTAAAATTGAAATAACTTTCTTCTTCGAT
1 TTTATGAAATAGC-TTTGAAGCCACCAATCTATAAATCAAAATCGAAATAACTTT-TTCTTCGAT
** *
282092 ATTCGACATTAACCATTAAATCGTTTGAAACTCACTAATAGGTCTTCTTTTTGAAAAAAAAA-TT
64 ATTCGAC-TTAACCATTAAATCGCCTGAAACTCACTAATAGGTCTTCTTTTTAAAAAAAAAACTT
*
282156 AACAA-TCGAATTATTTAAATAAAAACGTT-TGAACAGCTCAGT-GACTAAAATAAAAATTGTCA
128 AACAACTC-AATGATTTAAATAAAAACGTTCT-AACAGCTCAGTAG-CTAAAATAAAAATTGTCA
* *
282218 AATATTTTATATCTAAAATAATTTTTTTAAATA
190 AATATTTCAGATCTAAAATAATTTTTTTAAATA
282251 ATTTAGTGTT
Statistics
Matches: 192, Mismatches: 26, Indels: 11
0.84 0.11 0.05
Matches are distributed among these distances:
228 13 0.07
229 51 0.27
230 80 0.42
231 48 0.25
ACGTcount: A:0.40, C:0.12, G:0.09, T:0.38
Consensus pattern (227 bp):
TTTATGAAATAGCTTTGAAGCCACCAATCTATAAATCAAAATCGAAATAACTTTTTCTTCGATAT
TCGACTTAACCATTAAATCGCCTGAAACTCACTAATAGGTCTTCTTTTTAAAAAAAAAACTTAAC
AACTCAATGATTTAAATAAAAACGTTCTAACAGCTCAGTAGCTAAAATAAAAATTGTCAAATATT
TCAGATCTAAAATAATTTTTTTAAATATTTTT
Found at i:288676 original size:18 final size:18
Alignment explanation
Indices: 288653--288741 Score: 133
Period size: 18 Copynumber: 4.9 Consensus size: 18
288643 CGTTTACGGT
288653 ACTATTCACGTATACAGC
1 ACTATTCACGTATACAGC
*
288671 ACTATTCACGTATACAGT
1 ACTATTCACGTATACAGC
*
288689 ACTATTCACGTATACGGC
1 ACTATTCACGTATACAGC
* *
288707 ACTATTCACGTATACGGT
1 ACTATTCACGTATACAGC
*
288725 ACTGTTCACGTATACAG
1 ACTATTCACGTATACAG
288742 TAGTTGGGAT
Statistics
Matches: 65, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 65 1.00
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (18 bp):
ACTATTCACGTATACAGC
Found at i:288698 original size:36 final size:36
Alignment explanation
Indices: 288651--288741 Score: 155
Period size: 36 Copynumber: 2.5 Consensus size: 36
288641 ACCGTTTACG
288651 GTACTATTCACGTATACAGCACTATTCACGTATACA
1 GTACTATTCACGTATACAGCACTATTCACGTATACA
* *
288687 GTACTATTCACGTATACGGCACTATTCACGTATACG
1 GTACTATTCACGTATACAGCACTATTCACGTATACA
*
288723 GTACTGTTCACGTATACAG
1 GTACTATTCACGTATACAG
288742 TAGTTGGGAT
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
36 51 1.00
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.31
Consensus pattern (36 bp):
GTACTATTCACGTATACAGCACTATTCACGTATACA
Found at i:295491 original size:24 final size:23
Alignment explanation
Indices: 295451--295496 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
295441 TAAAAAATAA
*
295451 ATTAATTTTTTTATTAAAAATTT
1 ATTAATTTTTGTATTAAAAATTT
*
295474 ATTAATTTTTAGTGTTAAAAATT
1 ATTAATTTTT-GTATTAAAAATT
295497 GACATGATTG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 10 0.50
24 10 0.50
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.57
Consensus pattern (23 bp):
ATTAATTTTTGTATTAAAAATTT
Found at i:298656 original size:29 final size:29
Alignment explanation
Indices: 298623--298682 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
298613 AGAGAAAGTC
298623 ACGAACTCTAAATATAAACTATAAAATTG
1 ACGAACTCTAAATATAAACTATAAAATTG
298652 ACGAACTCTAAATATAAACTATAAAATTG
1 ACGAACTCTAAATATAAACTATAAAATTG
298681 AC
1 AC
298683 AAAGTAAAGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.52, C:0.15, G:0.07, T:0.27
Consensus pattern (29 bp):
ACGAACTCTAAATATAAACTATAAAATTG
Found at i:329475 original size:9 final size:10
Alignment explanation
Indices: 329432--329479 Score: 51
Period size: 10 Copynumber: 4.5 Consensus size: 10
329422 AGCAATTTAA
329432 TTTTCTTTCTT
1 TTTTCTTT-TT
*
329443 TTATTCTTTTAA
1 TT-TTCTTTT-T
*
329455 CTTTCTTTTT
1 TTTTCTTTTT
329465 TTTTCTTTTT
1 TTTTCTTTTT
329475 TTTTC
1 TTTTC
329480 ATTCTCTTCT
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
10 14 0.45
11 10 0.32
12 7 0.23
ACGTcount: A:0.06, C:0.15, G:0.00, T:0.79
Consensus pattern (10 bp):
TTTTCTTTTT
Found at i:329475 original size:23 final size:23
Alignment explanation
Indices: 329427--329473 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 23
329417 TTTTGAGCAA
*
329427 TTTAATTTTCTTTCTTTTATTCT
1 TTTAACTTTCTTTCTTTTATTCT
329450 TTTAACTTTCTTT-TTTT-TTCT
1 TTTAACTTTCTTTCTTTTATTCT
329471 TTT
1 TTT
329474 TTTTTCATTC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 7 0.30
22 4 0.17
23 12 0.52
ACGTcount: A:0.11, C:0.13, G:0.00, T:0.77
Consensus pattern (23 bp):
TTTAACTTTCTTTCTTTTATTCT
Found at i:331600 original size:17 final size:17
Alignment explanation
Indices: 331578--331611 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
331568 AAAAGCTACT
331578 GTACAAGAGCCAAATCA
1 GTACAAGAGCCAAATCA
*
331595 GTACAAGTGCCAAATCA
1 GTACAAGAGCCAAATCA
331612 TAAATACTCG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.24, G:0.18, T:0.15
Consensus pattern (17 bp):
GTACAAGAGCCAAATCA
Found at i:334544 original size:31 final size:31
Alignment explanation
Indices: 334508--334599 Score: 105
Period size: 31 Copynumber: 3.0 Consensus size: 31
334498 CATTGTGAAG
* *
334508 TATTTAAAATTTTTTATTT-AGATCATTAAAT
1 TATTTAAAAATTTTTATTTAAG-TCACTAAAT
* *
334539 TATTTAAAAATTTTCATTCAAGTCACTAAAT
1 TATTTAAAAATTTTTATTTAAGTCACTAAAT
* * *
334570 TATTTAAAAAATTTTATTTAAATAACTAAA
1 TATTTAAAAATTTTTATTTAAGTCACTAAA
334600 CTGTTAAATA
Statistics
Matches: 51, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
31 49 0.96
32 2 0.04
ACGTcount: A:0.45, C:0.07, G:0.02, T:0.47
Consensus pattern (31 bp):
TATTTAAAAATTTTTATTTAAGTCACTAAAT
Found at i:339823 original size:5 final size:5
Alignment explanation
Indices: 339813--339837 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
339803 TATATTTAAA
339813 ATAAT ATAAT ATAAT ATAAT ATAAT
1 ATAAT ATAAT ATAAT ATAAT ATAAT
339838 TTTCAAAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
ATAAT
Found at i:345496 original size:26 final size:27
Alignment explanation
Indices: 345462--345513 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 27
345452 GTTCGGAGTG
*
345462 TAATCAAG-TGGAGCTGAATTCAAATAA
1 TAATCAAGTTCGAG-TGAATTCAAATAA
*
345489 TAAT-AAGTTCGAGTTAATTCAAATA
1 TAATCAAGTTCGAGTGAATTCAAATA
345514 TCAAAATTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
26 14 0.64
27 8 0.36
ACGTcount: A:0.44, C:0.10, G:0.15, T:0.31
Consensus pattern (27 bp):
TAATCAAGTTCGAGTGAATTCAAATAA
Found at i:348241 original size:22 final size:22
Alignment explanation
Indices: 348215--348259 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
348205 TCTCATGAGA
348215 AACCTTAATAGGCAACAACATG
1 AACCTTAATAGGCAACAACATG
*
348237 AACCTTAATAGGCAGCAACATG
1 AACCTTAATAGGCAACAACATG
348259 A
1 A
348260 TCTTCATGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.44, C:0.22, G:0.16, T:0.18
Consensus pattern (22 bp):
AACCTTAATAGGCAACAACATG
Found at i:351370 original size:21 final size:21
Alignment explanation
Indices: 351344--351384 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
351334 ATCTGCTCAA
* *
351344 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
351365 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
351385 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:355887 original size:19 final size:20
Alignment explanation
Indices: 355863--355907 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
355853 CGATGAACAT
355863 ATGAAAAAGATAGAAA-ATG
1 ATGAAAAAGATAGAAATATG
***
355882 ATGAAAATTTTAGAAATATG
1 ATGAAAAAGATAGAAATATG
355902 ATGAAA
1 ATGAAA
355908 GAAAAACAAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 13 0.59
20 9 0.41
ACGTcount: A:0.58, C:0.00, G:0.18, T:0.24
Consensus pattern (20 bp):
ATGAAAAAGATAGAAATATG
Found at i:358238 original size:19 final size:20
Alignment explanation
Indices: 358188--358240 Score: 54
Period size: 19 Copynumber: 2.7 Consensus size: 20
358178 TATTTAAAAT
*
358188 AAAACATTAAATATAAATTA
1 AAAAAATTAAATATAAATTA
* *
358208 AAAAAATAAAATA-AAATTT
1 AAAAAATTAAATATAAATTA
* *
358227 ATAATATTAAATAT
1 AAAAAATTAAATAT
358241 TTAAATATTA
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
19 15 0.58
20 11 0.42
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (20 bp):
AAAAAATTAAATATAAATTA
Found at i:358247 original size:15 final size:15
Alignment explanation
Indices: 358219--358251 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
358209 AAAAATAAAA
358219 TAAAATTTATAATAT
1 TAAAATTTATAATAT
358234 TAAATATTTA-AATAT
1 TAAA-ATTTATAATAT
358249 TAA
1 TAA
358252 GAAATACTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 12 0.71
16 5 0.29
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
TAAAATTTATAATAT
Found at i:358369 original size:22 final size:24
Alignment explanation
Indices: 358344--358391 Score: 64
Period size: 22 Copynumber: 2.1 Consensus size: 24
358334 TAATATATAA
* *
358344 ATTTTTTTTTAAATT-TAAAA-AT
1 ATTTTTTATAAAATTCTAAAATAT
358366 ATTTTTTATAAAATTCTAAAATAT
1 ATTTTTTATAAAATTCTAAAATAT
358390 AT
1 AT
358392 ATTTATTGTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 13 0.59
23 5 0.23
24 4 0.18
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (24 bp):
ATTTTTTATAAAATTCTAAAATAT
Found at i:359359 original size:27 final size:27
Alignment explanation
Indices: 359311--359442 Score: 146
Period size: 27 Copynumber: 4.9 Consensus size: 27
359301 GCGAGACTGC
* *
359311 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
359338 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
* * *
359364 CAGATAATTATGGCATAGCCACCAG-GA
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
359391 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
*
359418 CAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
359443 GACGCTTCCT
Statistics
Matches: 91, Mismatches: 8, Indels: 12
0.82 0.07 0.11
Matches are distributed among these distances:
26 8 0.09
27 80 0.88
28 3 0.03
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:359406 original size:54 final size:53
Alignment explanation
Indices: 359337--359445 Score: 191
Period size: 54 Copynumber: 2.0 Consensus size: 53
359327 GTCACCAGAT
359337 ACAGATATTGTGGCAGAGCCACCAGAACAGATAATTATGGCATAGCCACCAGG
1 ACAGATATTGTGGCAGAGCCACCAGAACAGATAATTATGGCATAGCCACCAGG
* *
359390 ACAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGG
1 ACAGATAT-TGTGGCAGAGCCACCAGAACAGATAATTATGGCATAGCCACCAGG
359444 AC
1 AC
359446 GCTTCCTCCA
Statistics
Matches: 53, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
53 8 0.15
54 45 0.85
ACGTcount: A:0.35, C:0.23, G:0.25, T:0.17
Consensus pattern (53 bp):
ACAGATATTGTGGCAGAGCCACCAGAACAGATAATTATGGCATAGCCACCAGG
Found at i:361566 original size:20 final size:19
Alignment explanation
Indices: 361529--361580 Score: 61
Period size: 19 Copynumber: 2.7 Consensus size: 19
361519 TTTATAAAAA
*
361529 AATATTTTTA-AACCTTTTT
1 AATATTTTTACAA-ATTTTT
361548 AATATTTTTACAAATTTTT
1 AATATTTTTACAAATTTTT
*
361567 AATAAATTTTACAA
1 AAT-ATTTTTACAA
361581 TTTATTGTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
19 18 0.62
20 11 0.38
ACGTcount: A:0.40, C:0.08, G:0.00, T:0.52
Consensus pattern (19 bp):
AATATTTTTACAAATTTTT
Found at i:361582 original size:19 final size:19
Alignment explanation
Indices: 361543--361594 Score: 59
Period size: 20 Copynumber: 2.6 Consensus size: 19
361533 TTTTTAAACC
*
361543 TTTTTAATATTTTTACAAA
1 TTTTTAATAATTTTACAAA
*
361562 TTTTTAATAAATTTTACAAT
1 TTTTTAAT-AATTTTACAAA
361582 TTATTGTAATAAT
1 TT-TT-TAATAAT
361595 ATTATTAATT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
19 8 0.29
20 11 0.39
21 5 0.18
22 4 0.14
ACGTcount: A:0.38, C:0.04, G:0.02, T:0.56
Consensus pattern (19 bp):
TTTTTAATAATTTTACAAA
Found at i:364989 original size:2 final size:2
Alignment explanation
Indices: 364982--365045 Score: 128
Period size: 2 Copynumber: 32.0 Consensus size: 2
364972 AGCAATAGGG
364982 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
365024 AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT
365046 GGGTACAAAT
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 62 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:377085 original size:21 final size:21
Alignment explanation
Indices: 377046--377086 Score: 57
Period size: 23 Copynumber: 1.9 Consensus size: 21
377036 CTCACTTCAC
377046 TTTCCTTCTTCTCTTCTTCCCT
1 TTTCCTTCTTCTC-TCTTCCCT
377068 TTTCCTCTCTTCTC-CTTCC
1 TTTCCT-TCTTCTCTCTTCC
377087 TCTAAACTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 5 0.28
22 6 0.33
23 7 0.39
ACGTcount: A:0.00, C:0.44, G:0.00, T:0.56
Consensus pattern (21 bp):
TTTCCTTCTTCTCTCTTCCCT
Found at i:380053 original size:22 final size:22
Alignment explanation
Indices: 380020--380070 Score: 68
Period size: 22 Copynumber: 2.3 Consensus size: 22
380010 AACATTTAGA
380020 AAATGTTAAAATAAT-TAAATATT
1 AAAT-TTAAAATAATATAAATA-T
*
380043 AAATTTAAAATAGTATAAATAT
1 AAATTTAAAATAATATAAATAT
380065 AAATTT
1 AAATTT
380071 TTTTATTTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
22 16 0.62
23 10 0.38
ACGTcount: A:0.57, C:0.00, G:0.04, T:0.39
Consensus pattern (22 bp):
AAATTTAAAATAATATAAATAT
Found at i:383764 original size:24 final size:25
Alignment explanation
Indices: 383711--383764 Score: 65
Period size: 26 Copynumber: 2.2 Consensus size: 25
383701 ACTTATTAAT
* *
383711 ATATGTATTTTTTAAATATGATTAAT
1 ATATATATTTTTTAAATATGATT-AC
*
383737 ATATATATTTTTTAAATATGCTT-C
1 ATATATATTTTTTAAATATGATTAC
383761 ATAT
1 ATAT
383765 CAGTTTATAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 4 0.16
26 21 0.84
ACGTcount: A:0.37, C:0.04, G:0.06, T:0.54
Consensus pattern (25 bp):
ATATATATTTTTTAAATATGATTAC
Found at i:383764 original size:26 final size:26
Alignment explanation
Indices: 383705--383756 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
383695 AAAAAAACTT
*
383705 ATTAATATATGTATTTTTTAAATATG
1 ATTAATATATATATTTTTTAAATATG
383731 ATTAATATATATATTTTTTAAATATG
1 ATTAATATATATATTTTTTAAATATG
383757 CTTCATATCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.40, C:0.00, G:0.06, T:0.54
Consensus pattern (26 bp):
ATTAATATATATATTTTTTAAATATG
Found at i:386826 original size:17 final size:17
Alignment explanation
Indices: 386804--386836 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
386794 ATTAAATAAT
386804 GAGTTAACCTAATTTTA
1 GAGTTAACCTAATTTTA
386821 GAGTTAACCTAATTTT
1 GAGTTAACCTAATTTT
386837 TAACTATAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.33, C:0.12, G:0.12, T:0.42
Consensus pattern (17 bp):
GAGTTAACCTAATTTTA
Found at i:392591 original size:3 final size:3
Alignment explanation
Indices: 392585--392609 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
392575 AAGAAGAAGA
392585 AGG AGG AGG AGG AGG AGG AGG AGG A
1 AGG AGG AGG AGG AGG AGG AGG AGG A
392610 TTAAAGTGCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.36, C:0.00, G:0.64, T:0.00
Consensus pattern (3 bp):
AGG
Found at i:395056 original size:40 final size:40
Alignment explanation
Indices: 395011--395087 Score: 154
Period size: 40 Copynumber: 1.9 Consensus size: 40
395001 GTTACATACG
395011 CAGTTTCACATGTAATTAGCCTCAGCTGACTCAATTTACC
1 CAGTTTCACATGTAATTAGCCTCAGCTGACTCAATTTACC
395051 CAGTTTCACATGTAATTAGCCTCAGCTGACTCAATTT
1 CAGTTTCACATGTAATTAGCCTCAGCTGACTCAATTT
395088 CCTCTGGACA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.27, C:0.26, G:0.13, T:0.34
Consensus pattern (40 bp):
CAGTTTCACATGTAATTAGCCTCAGCTGACTCAATTTACC
Found at i:412351 original size:27 final size:28
Alignment explanation
Indices: 412321--412376 Score: 96
Period size: 27 Copynumber: 2.0 Consensus size: 28
412311 CTTTTAAGTC
*
412321 TTCATATTTTCATCCTA-TTAATAGGGA
1 TTCATATTTTCATACTATTTAATAGGGA
412348 TTCATATTTTCATACTATTTAATAGGGA
1 TTCATATTTTCATACTATTTAATAGGGA
412376 T
1 T
412377 GTAGCTAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
27 16 0.59
28 11 0.41
ACGTcount: A:0.30, C:0.12, G:0.11, T:0.46
Consensus pattern (28 bp):
TTCATATTTTCATACTATTTAATAGGGA
Found at i:413107 original size:18 final size:18
Alignment explanation
Indices: 413084--413121 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
413074 TGACCGATTC
413084 AACCACATTCTAATTTAA
1 AACCACATTCTAATTTAA
413102 AACCACATTCTAATTTAA
1 AACCACATTCTAATTTAA
413120 AA
1 AA
413122 AATATTAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.47, C:0.21, G:0.00, T:0.32
Consensus pattern (18 bp):
AACCACATTCTAATTTAA
Found at i:416562 original size:6 final size:7
Alignment explanation
Indices: 416543--416567 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
416533 ATATTTTTAA
416543 AATTTTT
1 AATTTTT
416550 AATTTTT
1 AATTTTT
416557 AATTTTT
1 AATTTTT
416564 AATT
1 AATT
416568 CTAATCTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (7 bp):
AATTTTT
Found at i:420778 original size:10 final size:10
Alignment explanation
Indices: 420763--420787 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
420753 ACAATATTAT
420763 GTAGAGCTAG
1 GTAGAGCTAG
420773 GTAGAGCTAG
1 GTAGAGCTAG
420783 GTAGA
1 GTAGA
420788 CATTAATTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.32, C:0.08, G:0.40, T:0.20
Consensus pattern (10 bp):
GTAGAGCTAG
Found at i:428713 original size:21 final size:21
Alignment explanation
Indices: 428687--428727 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
428677 AGACGAGCAA
* *
428687 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
428708 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
428728 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:436497 original size:44 final size:45
Alignment explanation
Indices: 436388--436984 Score: 549
Period size: 44 Copynumber: 13.6 Consensus size: 45
436378 CAAAAACAGG
* * * * *
436388 GACAAGATCTGCTTTTTTCGATCTACTTCACCACCAGTATGGGAA
1 GACAAGATCTGCTATCTTCGATCTACTTCACTACCAATATAGGAA
* *
436433 GACAAGATCTGC-ATCGTCGATCCACTTC-CTACCAATATAGGAA
1 GACAAGATCTGCTATCTTCGATCTACTTCACTACCAATATAGGAA
** * * * *
436476 GACCGGACCTGCTATCTTCGATCTACTTCAC-GCCAATACATGAA
1 GACAAGATCTGCTATCTTCGATCTACTTCACTACCAATATAGGAA
* * * *
436520 GACAAGATCTGCTTTCTGCGATCTACTTCGCTACCAATATGGGAA
1 GACAAGATCTGCTATCTTCGATCTACTTCACTACCAATATAGGAA
*
436565 GACAAGATCTGC-ATCTTCGATCCACTTC-CTACCAATATAGGAA
1 GACAAGATCTGCTATCTTCGATCTACTTCACTACCAATATAGGAA
* * * * *
436608 GATAGGATCTGCTA-CATTCGATCTACTTCAC-GCCAATACATGAA
1 GACAAGATCTGCTATC-TTCGATCTACTTCACTACCAATATAGGAA
* * * * * *
436652 GATAAGATCTACT-TCCTGCGATCTACTTCGCCACCAA-ATGGGAA
1 GACAAGATCTGCTAT-CTTCGATCTACTTCACTACCAATATAGGAA
*
436696 GACAAGATCTGC-ATCTTCGATCCACTTC-CTACCAATATAGGAA
1 GACAAGATCTGCTATCTTCGATCTACTTCACTACCAATATAGGAA
* * * * * *
436739 GATAGGATCTGCTACCTTCGATCTACTTCAC-GCCAATACATGAA
1 GACAAGATCTGCTATCTTCGATCTACTTCACTACCAATATAGGAA
* * * * * *
436783 GATAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAA
1 GACAAGATCTGCTATCTTCGATCTACTTCACTACCAATATAGGAA
* *
436828 GCCAAGATCTGC-ATCTTCGATCCACTTC-CTACCAATATAGGAA
1 GACAAGATCTGCTATCTTCGATCTACTTCACTACCAATATAGGAA
* * * * * *
436871 GATAGGATCTGCTACCTTCGATCTACTTCAC-GCCAATACATGAA
1 GACAAGATCTGCTATCTTCGATCTACTTCACTACCAATATAGGAA
* * * * * *
436915 GACAAGATCTGCTTTCTGCGATCTACTTCGCCACTAATATGGGAA
1 GACAAGATCTGCTATCTTCGATCTACTTCACTACCAATATAGGAA
* *
436960 GACAAGATCTGCAATCTTCAATCTA
1 GACAAGATCTGCTATCTTCGATCTA
436985 TTCCACTGCC
Statistics
Matches: 440, Mismatches: 95, Indels: 34
0.77 0.17 0.06
Matches are distributed among these distances:
42 6 0.01
43 96 0.22
44 248 0.56
45 90 0.20
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.27
Consensus pattern (45 bp):
GACAAGATCTGCTATCTTCGATCTACTTCACTACCAATATAGGAA
Found at i:436576 original size:132 final size:132
Alignment explanation
Indices: 436388--436978 Score: 1013
Period size: 132 Copynumber: 4.5 Consensus size: 132
436378 CAAAAACAGG
* * * * *
436388 GACAAGATCTGCTTTTTTCGATCTACTTCACCACCAGTATGGGAAGACAAGATCTGCATCGTCGA
1 GACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGA
** * *
436453 TCCACTTCCTACCAATATAGGAAGACCGGACCTGCTATCTTCGATCTACTTCACGCCAATACATG
66 TCCACTTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATACATG
436518 AA
131 AA
*
436520 GACAAGATCTGCTTTCTGCGATCTACTTCGCTACCAATATGGGAAGACAAGATCTGCATCTTCGA
1 GACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGA
*
436585 TCCACTTCCTACCAATATAGGAAGATAGGATCTGCTACATTCGATCTACTTCACGCCAATACATG
66 TCCACTTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATACATG
436650 AA
131 AA
* * *
436652 GATAAGATCTACTTCCTGCGATCTACTTCGCCACCAA-ATGGGAAGACAAGATCTGCATCTTCGA
1 GACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGA
436716 TCCACTTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATACATG
66 TCCACTTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATACATG
436781 AA
131 AA
* *
436783 GATAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGCCAAGATCTGCATCTTCGA
1 GACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGA
436848 TCCACTTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATACATG
66 TCCACTTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATACATG
436913 AA
131 AA
*
436915 GACAAGATCTGCTTTCTGCGATCTACTTCGCCACTAATATGGGAAGACAAGATCTGCAATCTTC
1 GACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGC-ATCTTC
436979 AATCTATTCC
Statistics
Matches: 435, Mismatches: 22, Indels: 3
0.95 0.05 0.01
Matches are distributed among these distances:
131 128 0.29
132 301 0.69
133 6 0.01
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (132 bp):
GACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGA
TCCACTTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATACATG
AA
Found at i:436893 original size:263 final size:263
Alignment explanation
Indices: 436388--436978 Score: 984
Period size: 263 Copynumber: 2.2 Consensus size: 263
436378 CAAAAACAGG
* ** * * * *
436388 GACAAGATCTGCTTTTTTCGATCTACTTCACCACCAGTATGGGAAGACAAGATCTGCATCGTCGA
1 GACAAGATCTACTTCCTGCGATCTACTTCGCCACCA-AATGGGAAGACAAGATCTGCATCTTCGA
* *
436453 TCCACTTCCTACCAATATAGGAAGACCGGACCTGCTATCTTCGATCTACTTCACGCCAATACATG
65 TCCACTTCCTACCAATATAGGAAGACAGGACCTGCTACCTTCGATCTACTTCACGCCAATACATG
*
436518 AAGACAAGATCTGCTTTCTGCGATCTACTTCGCTACCAATATGGGAAGACAAGATCTGCATCTTC
130 AAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTC
436583 GATCCACTTCCTACCAATATAGGAAGATAGGATCTGCTACATTCGATCTACTTCACGCCAATACA
195 GATCCACTTCCTACCAATATAGGAAGATAGGATCTGCTACATTCGATCTACTTCACGCCAATACA
436648 TGAA
260 TGAA
*
436652 GATAAGATCTACTTCCTGCGATCTACTTCGCCACCAAATGGGAAGACAAGATCTGCATCTTCGAT
1 GACAAGATCTACTTCCTGCGATCTACTTCGCCACCAAATGGGAAGACAAGATCTGCATCTTCGAT
* *
436717 CCACTTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATACATGA
66 CCACTTCCTACCAATATAGGAAGACAGGACCTGCTACCTTCGATCTACTTCACGCCAATACATGA
* *
436782 AGATAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGCCAAGATCTGCATCTTCG
131 AGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCG
*
436847 ATCCACTTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATACAT
196 ATCCACTTCCTACCAATATAGGAAGATAGGATCTGCTACATTCGATCTACTTCACGCCAATACAT
436912 GAA
261 GAA
* * *
436915 GACAAGATCTGCTTTCTGCGATCTACTTCGCCACTAATATGGGAAGACAAGATCTGCAATCTTC
1 GACAAGATCTACTTCCTGCGATCTACTTCGCCACCAA-ATGGGAAGACAAGATCTGC-ATCTTC
436979 AATCTATTCC
Statistics
Matches: 305, Mismatches: 20, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
263 250 0.82
264 49 0.16
265 6 0.02
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (263 bp):
GACAAGATCTACTTCCTGCGATCTACTTCGCCACCAAATGGGAAGACAAGATCTGCATCTTCGAT
CCACTTCCTACCAATATAGGAAGACAGGACCTGCTACCTTCGATCTACTTCACGCCAATACATGA
AGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCG
ATCCACTTCCTACCAATATAGGAAGATAGGATCTGCTACATTCGATCTACTTCACGCCAATACAT
GAA
Found at i:437024 original size:45 final size:47
Alignment explanation
Indices: 436973--437309 Score: 156
Period size: 45 Copynumber: 7.4 Consensus size: 47
436963 AAGATCTGCA
436973 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGT-TATCG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTCTATCG
* * * * * * *
437019 A-CTTCAATCTACTCCACTG--TAGTCACAGGGAGGTAAAATCTA-CC
1 ATCTTCAATCTATTCCACTGCCAAAT-ACAGGGAGATAGAGTCTATCG
* * * * * *
437063 ATCTTCGATCTGCTT-CGCTGCCAAATACAGGAAGGCA-AGA-TCTGT-A
1 ATCTTCAATCT-ATTCCACTGCCAAATACAGGGA-G-ATAGAGTCTATCG
*
437109 ATCTTCAATCTATTCCACTGCCAGATACAGGGAGATAGAGT-TATCG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTCTATCG
* * * * * * * * * *
437155 -GCTTCAATGTACTCCACTG--TAGTCACAGGGAGGTAAAATCT-GCC
1 ATCTTCAATCTATTCCACTGCCAAAT-ACAGGGAGATAGAGTCTATCG
* * * * * *
437199 ATCTTCGATCTGCTT-CGCTGCCAAATACAGGAAGGCA-AGA-TCTGT-A
1 ATCTTCAATCT-ATTCCACTGCCAAATACAGGGA-G-ATAGAGTCTATCG
*
437245 ATCTTCAATCTATTCCACTGCCAGATACAGGGAGATAGAGT-TATCG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTCTATCG
* * *
437291 -GCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTG
437310 TTGTCAGGGA
Statistics
Matches: 206, Mismatches: 59, Indels: 53
0.65 0.19 0.17
Matches are distributed among these distances:
43 3 0.01
44 29 0.14
45 91 0.44
46 73 0.35
47 10 0.05
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (47 bp):
ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTCTATCG
Found at i:437114 original size:136 final size:136
Alignment explanation
Indices: 436956--437385 Score: 724
Period size: 136 Copynumber: 3.2 Consensus size: 136
436946 CACTAATATG
* * * *
436956 GGAAGACAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGAC
1 GGAAGGCAAGATCTGTAATCTTCAATCTATTCCACTGCCAGATACAGGGAGATAGAGTTATCGGC
* *
437021 TTCAATCTACTCCACTGTAGTCACAGGGAGGTAAAATCTACCATCTTCGATCTGCTTCGCTGCCA
66 TTCAATGTACTCCACTGTAGTCACAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCA
437086 AATACA
131 AATACA
437092 GGAAGGCAAGATCTGTAATCTTCAATCTATTCCACTGCCAGATACAGGGAGATAGAGTTATCGGC
1 GGAAGGCAAGATCTGTAATCTTCAATCTATTCCACTGCCAGATACAGGGAGATAGAGTTATCGGC
437157 TTCAATGTACTCCACTGTAGTCACAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCA
66 TTCAATGTACTCCACTGTAGTCACAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCA
437222 AATACA
131 AATACA
437228 GGAAGGCAAGATCTGTAATCTTCAATCTATTCCACTGCCAGATACAGGGAGATAGAGTTATCGGC
1 GGAAGGCAAGATCTGTAATCTTCAATCTATTCCACTGCCAGATACAGGGAGATAGAGTTATCGGC
* * *
437293 TTCAATGTACTCCACTGTTGT--CAGGGAGGTAAAATTTGCCATCTTCGATCTGCTTCGCTGTC-
66 TTCAATGTACTCCACTGTAGTCACAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCA
* *
437355 AGTGCA
131 AATACA
437361 GGAAGGCAAGATCTGATAA-CTTCAA
1 GGAAGGCAAGATCTG-TAATCTTCAA
437386 CCAGCTCTGC
Statistics
Matches: 282, Mismatches: 11, Indels: 5
0.95 0.04 0.02
Matches are distributed among these distances:
133 25 0.09
134 42 0.15
136 215 0.76
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (136 bp):
GGAAGGCAAGATCTGTAATCTTCAATCTATTCCACTGCCAGATACAGGGAGATAGAGTTATCGGC
TTCAATGTACTCCACTGTAGTCACAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCA
AATACA
Found at i:437130 original size:46 final size:46
Alignment explanation
Indices: 436962--437278 Score: 165
Period size: 46 Copynumber: 7.0 Consensus size: 46
436952 TATGGGAAGA
*
436962 CAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGA-G
1 CAAGATCTGTAATCTTCAATCTATTCCACTGCCAAATACAGGGAGG
* * * * *
437007 -ATAGAGT-TATCGA-CTTCAATCTACTCCACTG--TAGTCACAGGGAGG
1 CA-AGA-TCTGT-AATCTTCAATCTATTCCACTGCCAAAT-ACAGGGAGG
* * *** * * * *
437052 TAAAATCTACCATCTTCGATCTGCTT-CGCTGCCAAATACAGGAAGG
1 CAAGATCTGTAATCTTCAATCT-ATTCCACTGCCAAATACAGGGAGG
*
437098 CAAGATCTGTAATCTTCAATCTATTCCACTGCCAGATACAGGGA-G
1 CAAGATCTGTAATCTTCAATCTATTCCACTGCCAAATACAGGGAGG
* *** * * * *
437143 -ATAGAGT-TATCGGCTTCAATGTACTCCACTG--TAGTCACAGGGAGG
1 CA-AGA-TCTGTAATCTTCAATCTATTCCACTGCCAAAT-ACAGGGAGG
* * ** * * * *
437188 TAAAATCTGCCATCTTCGATCTGCTT-CGCTGCCAAATACAGGAAGG
1 CAAGATCTGTAATCTTCAATCT-ATTCCACTGCCAAATACAGGGAGG
*
437234 CAAGATCTGTAATCTTCAATCTATTCCACTGCCAGATACAGGGAG
1 CAAGATCTGTAATCTTCAATCTATTCCACTGCCAAATACAGGGAG
437279 ATAGAGTTAT
Statistics
Matches: 193, Mismatches: 57, Indels: 43
0.66 0.19 0.15
Matches are distributed among these distances:
43 3 0.02
44 19 0.10
45 80 0.41
46 87 0.45
47 4 0.02
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.26
Consensus pattern (46 bp):
CAAGATCTGTAATCTTCAATCTATTCCACTGCCAAATACAGGGAGG
Found at i:441489 original size:19 final size:20
Alignment explanation
Indices: 441465--441508 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
441455 CGTGAAAGTC
* *
441465 TAATGCATATG-ATGCAATG
1 TAATGCAAATGCATGAAATG
441484 TAATGCAAATGCATGAAATG
1 TAATGCAAATGCATGAAATG
441504 -AATGC
1 TAATGC
441509 CAAAAGAAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.41, C:0.11, G:0.20, T:0.27
Consensus pattern (20 bp):
TAATGCAAATGCATGAAATG
Found at i:445205 original size:20 final size:20
Alignment explanation
Indices: 445180--445220 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
445170 GACAATAAGG
445180 TAAGATCTAAATTAAATTCT
1 TAAGATCTAAATTAAATTCT
445200 TAAGATCTAAATTAAATTCT
1 TAAGATCTAAATTAAATTCT
445220 T
1 T
445221 TCTTTTTTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.44, C:0.10, G:0.05, T:0.41
Consensus pattern (20 bp):
TAAGATCTAAATTAAATTCT
Found at i:451853 original size:20 final size:20
Alignment explanation
Indices: 451828--451877 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
451818 TGGCTTAAAA
451828 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
451848 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
451865 GTGGTAGTGGATT
1 TTGGTAGTGGATT
451878 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:456483 original size:20 final size:20
Alignment explanation
Indices: 456458--456507 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
456448 TGGCTTAAAA
456458 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
456478 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
456495 GTGGTAGTGGATT
1 TTGGTAGTGGATT
456508 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:465262 original size:13 final size:12
Alignment explanation
Indices: 465239--465266 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
465229 AGAAACCTTG
465239 TTTTGTTTTTTT
1 TTTTGTTTTTTT
465251 TTTTGTTTTTTT
1 TTTTGTTTTTTT
465263 TTTT
1 TTTT
465267 ACTAGGCCGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.00, C:0.00, G:0.07, T:0.93
Consensus pattern (12 bp):
TTTTGTTTTTTT
Found at i:466986 original size:29 final size:29
Alignment explanation
Indices: 466893--466997 Score: 74
Period size: 30 Copynumber: 3.6 Consensus size: 29
466883 TTTGAGTTTA
*
466893 TTTTTAATGATTTA-TTTGGTATTTAGAGTT
1 TTTTTAATG-TTAATTTTGGTATTTA-AGTT
* * * * *
466923 TTTTTTATCTCAAATTT-ATATTTGAA-TT
1 TTTTTAATGTTAATTTTGGTATTT-AAGTT
*
466951 TAATTTTAATGTTTATTTTGGTATTTAAGTT
1 T--TTTTAATGTTAATTTTGGTATTTAAGTT
466982 TTTTTAAT-TTAATTTT
1 TTTTTAATGTTAATTTT
466998 AAAAGTTTTT
Statistics
Matches: 57, Mismatches: 12, Indels: 14
0.69 0.14 0.17
Matches are distributed among these distances:
28 10 0.18
29 15 0.26
30 24 0.42
31 8 0.14
ACGTcount: A:0.26, C:0.02, G:0.10, T:0.63
Consensus pattern (29 bp):
TTTTTAATGTTAATTTTGGTATTTAAGTT
Found at i:469184 original size:17 final size:17
Alignment explanation
Indices: 469162--469198 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
469152 GTTTCATTGT
469162 AAACTTAACTAAAATCA
1 AAACTTAACTAAAATCA
* *
469179 AAACTTAATTAAAATTA
1 AAACTTAACTAAAATCA
469196 AAA
1 AAA
469199 GTTTATGTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.62, C:0.11, G:0.00, T:0.27
Consensus pattern (17 bp):
AAACTTAACTAAAATCA
Found at i:474418 original size:53 final size:52
Alignment explanation
Indices: 474288--474428 Score: 169
Period size: 52 Copynumber: 2.7 Consensus size: 52
474278 TTTGCTTCTG
* ** *
474288 TATAAGACCATAGCAGGGCTATGGCATCGGTACAATGTGATTCGTGCAACCT
1 TATAAGACCATAGCTGGGCTATGGCATCGGTATGATGTGATTCGTGCAACCA
*
474340 TATAAGACCATAGCTGGGCTATGGCATCGGTATGATGTGATAAT-GTG-ATTCCA
1 TATAAGACCATAGCTGGGCTATGGCATCGGTATGATGTGAT--TCGTGCA-ACCA
* * *
474393 TATAAGACCATATCTGGGATATGGCATCAGTATGAT
1 TATAAGACCATAGCTGGGCTATGGCATCGGTATGAT
474429 ATGTGATCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
52 39 0.50
53 38 0.49
54 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (52 bp):
TATAAGACCATAGCTGGGCTATGGCATCGGTATGATGTGATTCGTGCAACCA
Found at i:475296 original size:20 final size:20
Alignment explanation
Indices: 475271--475308 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
475261 GCCTCACGGG
*
475271 CAGGCCACGCGGGCATGTCC
1 CAGGCCACACGGGCATGTCC
475291 CAGGCCACACGGGCATGT
1 CAGGCCACACGGGCATGT
475309 GCCCCTATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.18, C:0.37, G:0.34, T:0.11
Consensus pattern (20 bp):
CAGGCCACACGGGCATGTCC
Found at i:477548 original size:3 final size:3
Alignment explanation
Indices: 477540--477598 Score: 55
Period size: 3 Copynumber: 19.7 Consensus size: 3
477530 CGAGCGAGAC
* * ** * * *
477540 GAA GAA GAA GAA GAT GAC GTT GAA GAT GAA GAA GAG GAA GAG GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
477588 GAA GAA GAA GA
1 GAA GAA GAA GA
477599 GCCGAGGCTT
Statistics
Matches: 44, Mismatches: 12, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.54, C:0.02, G:0.37, T:0.07
Consensus pattern (3 bp):
GAA
Found at i:477564 original size:21 final size:21
Alignment explanation
Indices: 477540--477595 Score: 67
Period size: 21 Copynumber: 2.7 Consensus size: 21
477530 CGAGCGAGAC
* * **
477540 GAAGAAGAAGAAGATGACGTT
1 GAAGAAGAAGAAGAGGAAGAG
*
477561 GAAGATGAAGAAGAGGAAGAG
1 GAAGAAGAAGAAGAGGAAGAG
477582 GAAGAAGAAGAAGA
1 GAAGAAGAAGAAGA
477596 AGAGCCGAGG
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.54, C:0.02, G:0.38, T:0.07
Consensus pattern (21 bp):
GAAGAAGAAGAAGAGGAAGAG
Found at i:481315 original size:28 final size:28
Alignment explanation
Indices: 481275--481330 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
481265 AGGTTTGTTA
481275 GGACAACAACTCTGTGCAAATATTCATG
1 GGACAACAACTCTGTGCAAATATTCATG
481303 GGACAACAACTCTGTGCAAATATTCATG
1 GGACAACAACTCTGTGCAAATATTCATG
481331 TAGTCCACTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.36, C:0.21, G:0.18, T:0.25
Consensus pattern (28 bp):
GGACAACAACTCTGTGCAAATATTCATG
Found at i:486273 original size:19 final size:20
Alignment explanation
Indices: 486238--486280 Score: 61
Period size: 19 Copynumber: 2.2 Consensus size: 20
486228 GTATATAATT
*
486238 TTTTATAATATTTTTTTAAC
1 TTTTATAATATTATTTTAAC
*
486258 TTTTAT-ATATTATTTTGAC
1 TTTTATAATATTATTTTAAC
486277 TTTT
1 TTTT
486281 TAAAATTTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 15 0.71
20 6 0.29
ACGTcount: A:0.26, C:0.05, G:0.02, T:0.67
Consensus pattern (20 bp):
TTTTATAATATTATTTTAAC
Found at i:486281 original size:20 final size:21
Alignment explanation
Indices: 486237--486290 Score: 60
Period size: 20 Copynumber: 2.7 Consensus size: 21
486227 AGTATATAAT
*
486237 TTTTTATAATATTTTTTTAAC
1 TTTTTATAATATTATTTTAAC
*
486258 -TTTTAT-ATATTATTTTGAC
1 TTTTTATAATATTATTTTAAC
*
486277 TTTTTAAAAT-TTAT
1 TTTTTATAATATTAT
486291 AATTATATAT
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
19 11 0.39
20 15 0.54
21 2 0.07
ACGTcount: A:0.30, C:0.04, G:0.02, T:0.65
Consensus pattern (21 bp):
TTTTTATAATATTATTTTAAC
Found at i:486504 original size:20 final size:22
Alignment explanation
Indices: 486461--486507 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
486451 AAGTCAAAAG
486461 TATTTTTAAATATTATAATTTT
1 TATTTTTAAATATTATAATTTT
*
486483 TATTTTTAAAT-TTA-ATTTTT
1 TATTTTTAAATATTATAATTTT
486503 TATTT
1 TATTT
486508 AAATAAACCT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 10 0.42
21 3 0.12
22 11 0.46
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (22 bp):
TATTTTTAAATATTATAATTTT
Found at i:501246 original size:16 final size:16
Alignment explanation
Indices: 501225--501256 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
501215 TTGTAATGCA
501225 GTATGTATTGTTCCGT
1 GTATGTATTGTTCCGT
501241 GTATGTATTGTTCCGT
1 GTATGTATTGTTCCGT
501257 TTGAGTAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.12, C:0.12, G:0.25, T:0.50
Consensus pattern (16 bp):
GTATGTATTGTTCCGT
Found at i:502179 original size:16 final size:16
Alignment explanation
Indices: 502147--502188 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 16
502137 GTTAATAGAA
502147 TAAATTTAGTGTTAATTGT
1 TAAATTTA-T-TTAATT-T
502166 T-AATTTATTTAATTT
1 TAAATTTATTTAATTT
502181 TAAATTTA
1 TAAATTTA
502189 ATTTGTCAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
15 2 0.09
16 12 0.55
17 1 0.05
18 6 0.27
19 1 0.05
ACGTcount: A:0.36, C:0.00, G:0.07, T:0.57
Consensus pattern (16 bp):
TAAATTTATTTAATTT
Found at i:504006 original size:23 final size:24
Alignment explanation
Indices: 503975--504023 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 24
503965 ACACATTTAA
503975 TTTAA-TTTTCA-ATATATTATATT
1 TTTAATTTTTCACATATATTA-ATT
* *
503998 TTTACTTTTTCACTTATATTAATT
1 TTTAATTTTTCACATATATTAATT
504022 TT
1 TT
504024 GAAAAGTTAC
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
23 4 0.18
24 11 0.50
25 7 0.32
ACGTcount: A:0.29, C:0.08, G:0.00, T:0.63
Consensus pattern (24 bp):
TTTAATTTTTCACATATATTAATT
Found at i:508778 original size:29 final size:29
Alignment explanation
Indices: 508730--508787 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 29
508720 TTCTTGGGAG
508730 TGGATCAAATTAGCCACTATATTATTAAA
1 TGGATCAAATTAGCCACTATATTATTAAA
*
508759 TGGATCAATTTAGTCC-CTATATTATTAAA
1 TGGATCAAATTAG-CCACTATATTATTAAA
508788 AAGAATCAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
29 25 0.93
30 2 0.07
ACGTcount: A:0.38, C:0.14, G:0.10, T:0.38
Consensus pattern (29 bp):
TGGATCAAATTAGCCACTATATTATTAAA
Found at i:519821 original size:17 final size:17
Alignment explanation
Indices: 519801--519834 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
519791 ACTAAAATTT
*
519801 TAAAATTAAATATTAAA
1 TAAAACTAAATATTAAA
*
519818 TAAAACTAAATTTTAAA
1 TAAAACTAAATATTAAA
519835 AGTTTAAAGA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (17 bp):
TAAAACTAAATATTAAA
Found at i:521491 original size:31 final size:31
Alignment explanation
Indices: 521453--521523 Score: 124
Period size: 31 Copynumber: 2.3 Consensus size: 31
521443 AATGAAATCC
521453 AAGTTCAAGGGCAAAATTAGACCTAATTGCT
1 AAGTTCAAGGGCAAAATTAGACCTAATTGCT
* *
521484 AATTTCAAGGGCAAAATTGGACCTAATTGCT
1 AAGTTCAAGGGCAAAATTAGACCTAATTGCT
521515 AAGTTCAAG
1 AAGTTCAAG
521524 TACTAAATTG
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
31 37 1.00
ACGTcount: A:0.38, C:0.15, G:0.20, T:0.27
Consensus pattern (31 bp):
AAGTTCAAGGGCAAAATTAGACCTAATTGCT
Done.