Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 100 of 362
Found at i:32467543 original size:47 final size:45
Alignment explanation
Indices: 32467477--32467578 Score: 107
Period size: 45 Copynumber: 2.2 Consensus size: 45
32467467 CATCTTGATG
* * * * *
32467477 TGGTCTTACATGGAGTCCTTAATCAATGCCGATGCCATGTCTTGACA
1 TGGTCTTACAGGGAGTCCTT--GCAATACCAATCCCATGTCTTGACA
**
32467524 TGGTCTTACACGGGA-TCCTTGCCTTACCAATCCCATGTCTTGACA
1 TGGTCTTACA-GGGAGTCCTTGCAATACCAATCCCATGTCTTGACA
32467569 TGGTCTTACA
1 TGGTCTTACA
32467579 TTGTATCCTT
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
45 29 0.62
47 15 0.32
48 3 0.06
ACGTcount: A:0.22, C:0.26, G:0.20, T:0.32
Consensus pattern (45 bp):
TGGTCTTACAGGGAGTCCTTGCAATACCAATCCCATGTCTTGACA
Found at i:32468222 original size:30 final size:30
Alignment explanation
Indices: 32468188--32468248 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
32468178 TCCCTAACTC
32468188 AAACTTTGGAAAAATTACAATTTTTCCCCT
1 AAACTTTGGAAAAATTACAATTTTTCCCCT
* * *
32468218 AAACTTTTGCAGAATTACAATTTTTCCCCT
1 AAACTTTGGAAAAATTACAATTTTTCCCCT
32468248 A
1 A
32468249 CGCTCAGAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.34, C:0.21, G:0.07, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTTCCCCT
Found at i:32472214 original size:44 final size:43
Alignment explanation
Indices: 32472144--32472254 Score: 118
Period size: 44 Copynumber: 2.5 Consensus size: 43
32472134 TGATTCGGTT
32472144 ATATATTGGCACTAAGTGTGTGAGACTGAGA-AAGCTTTGGCTAA
1 ATATATTGGCACTAAGTGTGTGAGACT-AGATAA-CTTTGGCTAA
* *
32472188 ATATATTGGCACTAATTGTGCT-AGACTAGATAACTTTGGTTATATA
1 ATATATTGGCACTAAGTGTG-TGAGACTAGATAACTTTGG--CTA-A
*
32472234 CATATATTGGCACTTAGTGTG
1 -ATATATTGGCACTAAGTGTG
32472255 CGTGATTGAG
Statistics
Matches: 57, Mismatches: 4, Indels: 9
0.81 0.06 0.13
Matches are distributed among these distances:
43 9 0.16
44 26 0.46
45 3 0.05
46 1 0.02
47 18 0.32
ACGTcount: A:0.31, C:0.12, G:0.23, T:0.35
Consensus pattern (43 bp):
ATATATTGGCACTAAGTGTGTGAGACTAGATAACTTTGGCTAA
Found at i:32472326 original size:48 final size:47
Alignment explanation
Indices: 32472146--32472349 Score: 181
Period size: 48 Copynumber: 4.5 Consensus size: 47
32472136 ATTCGGTTAT
* * *
32472146 ATATTGGCACTAAGTGTGTGAGACTGAGAAAGCTTTGGCTA-A-AT-
1 ATATTGGCACTAAGTGTGCGAGATTGAGATAGCTTTGGCTATATATA
* * * * * *
32472190 ATATTGGCACTAATTGTGCTAGACT-AGATAACTTTGGTTATATACA
1 ATATTGGCACTAAGTGTGCGAGATTGAGATAGCTTTGGCTATATATA
* * **
32472236 TATATTGGCACTTAGTGTGCGTGATTGAGATAGCTTCAGCTATATATA
1 -ATATTGGCACTAAGTGTGCGAGATTGAGATAGCTTTGGCTATATATA
* *
32472284 CATATTGGCACTTAGTGTGCGAGATTGATATAGCTTTGGCTAT-T-T-
1 -ATATTGGCACTAAGTGTGCGAGATTGAGATAGCTTTGGCTATATATA
* *
32472329 AT-TTGGCGCTAAGTGTACGAG
1 ATATTGGCACTAAGTGTGCGAG
32472350 TTTTTGGGTA
Statistics
Matches: 130, Mismatches: 25, Indels: 11
0.78 0.15 0.07
Matches are distributed among these distances:
43 28 0.22
44 25 0.19
45 1 0.01
46 1 0.01
47 21 0.16
48 54 0.42
ACGTcount: A:0.28, C:0.13, G:0.24, T:0.35
Consensus pattern (47 bp):
ATATTGGCACTAAGTGTGCGAGATTGAGATAGCTTTGGCTATATATA
Found at i:32478763 original size:48 final size:47
Alignment explanation
Indices: 32478620--32478819 Score: 173
Period size: 48 Copynumber: 4.4 Consensus size: 47
32478610 ATTCGGTTAT
* *
32478620 ATATTGGCACTAAGTGTGTGAGACTGAGATAGCTTCGACTA-A-AT-
1 ATATTGGCACTAAGTGTGCGAGACTGAGATAGCTTCGGCTATATATA
* * * * *
32478664 ATATTGGCACTAATTGTGCGAGACT-AGATAACTTTGGTTATATACA
1 ATATTGGCACTAAGTGTGCGAGACTGAGATAGCTTCGGCTATATATA
* * * *
32478710 TATATTGGCACTTAGTGTGCGTGATTGAGATAGCTCCGGCTATATATA
1 -ATATTGGCACTAAGTGTGCGAGACTGAGATAGCTTCGGCTATATATA
* * * * *
32478758 CATATTGGCACTTAGTGTGCGAGATTGATATAACTTTGGCTAT-T-T-
1 -ATATTGGCACTAAGTGTGCGAGACTGAGATAGCTTCGGCTATATATA
*
32478803 AT-TTGGCGCTAAGTGTG
1 ATATTGGCACTAAGTGTG
32478820 TGAGTTTTCG
Statistics
Matches: 127, Mismatches: 24, Indels: 11
0.78 0.15 0.07
Matches are distributed among these distances:
43 24 0.19
44 26 0.20
45 1 0.01
46 1 0.01
47 22 0.17
48 53 0.42
ACGTcount: A:0.28, C:0.14, G:0.24, T:0.35
Consensus pattern (47 bp):
ATATTGGCACTAAGTGTGCGAGACTGAGATAGCTTCGGCTATATATA
Found at i:32478809 original size:91 final size:89
Alignment explanation
Indices: 32478617--32478819 Score: 214
Period size: 91 Copynumber: 2.2 Consensus size: 89
32478607 ATGATTCGGT
* * *
32478617 TATATATTGGCACTAAGTGTGTGAGACTGAGATAGCTTCGACTAAATATATTGGCACTAATTGTG
1 TATATATTGGCACTAAGTGTGCGAGACTGAGATAGCTCCGACTAAATATATTGGCACTAAGTGTG
*
32478682 CGAGACTAGATAACTTTGGTTATA
66 CGAGACTAGATAACTTTGGCTATA
* * * * *
32478706 TACATATATTGGCACTTAGTGTGCGTGATTGAGATAGCTCCGGCTATATATACATATTGGCACTT
1 T--ATATATTGGCACTAAGTGTGCGAGACTGAGATAGCTCCGACTA-A-AT--ATATTGGCACTA
* *
32478771 AGTGTGCGAGATTGATATAACTTTGGCTAT-
60 AGTGTGCGAGACT-AGATAACTTTGGCTATA
*
32478801 T-TAT-TTGGCGCTAAGTGTG
1 TATATATTGGCACTAAGTGTG
32478820 TGAGTTTTCG
Statistics
Matches: 94, Mismatches: 13, Indels: 12
0.79 0.11 0.10
Matches are distributed among these distances:
89 1 0.01
91 50 0.53
92 4 0.04
93 2 0.02
95 23 0.24
96 14 0.15
ACGTcount: A:0.28, C:0.13, G:0.24, T:0.35
Consensus pattern (89 bp):
TATATATTGGCACTAAGTGTGCGAGACTGAGATAGCTCCGACTAAATATATTGGCACTAAGTGTG
CGAGACTAGATAACTTTGGCTATA
Found at i:32495854 original size:40 final size:40
Alignment explanation
Indices: 32495654--32495846 Score: 327
Period size: 40 Copynumber: 4.9 Consensus size: 40
32495644 ATTCGGATTG
32495654 ATAACCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
32495693 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
32495733 ATAA-CGGGCCAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
32495772 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
32495812 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
32495847 AAGCTATATC
Statistics
Matches: 145, Mismatches: 7, Indels: 3
0.94 0.05 0.02
Matches are distributed among these distances:
39 50 0.34
40 95 0.66
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.22
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:32495862 original size:79 final size:80
Alignment explanation
Indices: 32495654--32495872 Score: 331
Period size: 79 Copynumber: 2.8 Consensus size: 80
32495644 ATTCGGATTG
32495654 ATAACCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
*
32495718 TTTGTGCGAGTTACT
66 ATTGTGCGAGTTACT
* * *
32495733 ATAA-CGGGCCAAGTCCCGAAGGCAATTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
32495797 ATTGTGCGAGTTACT
66 ATTGTGCGAGTTACT
* * *
32495812 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-AAGCTATATCC-GGCTAA-ACCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGCTAAGTCCCGAAGG
32495873 TACTTGGTTT
Statistics
Matches: 127, Mismatches: 10, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
78 16 0.13
79 77 0.61
80 34 0.27
ACGTcount: A:0.27, C:0.23, G:0.28, T:0.21
Consensus pattern (80 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
ATTGTGCGAGTTACT
Found at i:32503833 original size:38 final size:39
Alignment explanation
Indices: 32503696--32503844 Score: 221
Period size: 40 Copynumber: 3.8 Consensus size: 39
32503686 CAGATTGATA
*
32503696 ACCGGGCTAAG-CCCGAAGGCATTTGTGTGAGTTACTAT
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT
*
32503734 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCCAGTTACTAT
1 A-CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT
* *
32503774 AACCGGGCCAAGTCCCGAAGGCAATTGTGCGAGTTACTAT
1 -ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT
*
32503814 ACCGGGC-AAGTCCCGAAGGCATTTGAGCGAG
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
32503845 AAGCTATATC
Statistics
Matches: 101, Mismatches: 7, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
38 23 0.23
39 17 0.17
40 60 0.59
41 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (39 bp):
ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT
Found at i:32507017 original size:14 final size:14
Alignment explanation
Indices: 32506998--32507026 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
32506988 AAATATTTGG
32506998 CTAGGCTTTGGTAA
1 CTAGGCTTTGGTAA
32507012 CTAGGCTTTGGTAA
1 CTAGGCTTTGGTAA
32507026 C
1 C
32507027 CAGAAAATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.21, C:0.17, G:0.28, T:0.34
Consensus pattern (14 bp):
CTAGGCTTTGGTAA
Found at i:32519121 original size:30 final size:30
Alignment explanation
Indices: 32519077--32519135 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
32519067 ACTTAACAAG
*
32519077 CAAATGTCTCTAAAATAATAACAAAATTAT
1 CAAATGCCTCTAAAATAATAACAAAATTAT
*
32519107 CAAATGCCTTTAAAATAATAACAAAATTA
1 CAAATGCCTCTAAAATAATAACAAAATTA
32519136 ATAATAGAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.54, C:0.14, G:0.03, T:0.29
Consensus pattern (30 bp):
CAAATGCCTCTAAAATAATAACAAAATTAT
Found at i:32519711 original size:8 final size:7
Alignment explanation
Indices: 32519698--32519746 Score: 54
Period size: 6 Copynumber: 7.6 Consensus size: 7
32519688 TGATGTTTAA
32519698 ATAAATTT
1 ATAAA-TT
32519706 ATAAATT
1 ATAAATT
32519713 AT-AATT
1 ATAAATT
32519719 AT-AATT
1 ATAAATT
32519725 AT-AATT
1 ATAAATT
32519731 AT-AATT
1 ATAAATT
32519737 ATAAA-T
1 ATAAATT
32519743 ATAA
1 ATAA
32519747 TTTTGAAATA
Statistics
Matches: 40, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
6 29 0.73
7 6 0.15
8 5 0.12
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (7 bp):
ATAAATT
Found at i:32519720 original size:6 final size:6
Alignment explanation
Indices: 32519704--32519748 Score: 72
Period size: 6 Copynumber: 7.3 Consensus size: 6
32519694 TTAAATAAAT
*
32519704 TTATAAA TTATAA TTATAA TTATAA TTATAA TTATAA ATATAA TT
1 TTAT-AA TTATAA TTATAA TTATAA TTATAA TTATAA TTATAA TT
32519749 TTGAAATATA
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
6 32 0.89
7 4 0.11
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (6 bp):
TTATAA
Found at i:32519757 original size:13 final size:12
Alignment explanation
Indices: 32519709--32519759 Score: 66
Period size: 12 Copynumber: 4.2 Consensus size: 12
32519699 TAAATTTATA
*
32519709 AATTATAATTAT
1 AATTATAAATAT
*
32519721 AATTATAATTAT
1 AATTATAAATAT
32519733 AATTATAAATAT
1 AATTATAAATAT
*
32519745 AATTTTGAAATAT
1 AATTAT-AAATAT
32519758 AA
1 AA
32519760 GATCTGTTGC
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
12 28 0.78
13 8 0.22
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (12 bp):
AATTATAAATAT
Found at i:32521846 original size:29 final size:31
Alignment explanation
Indices: 32521812--32521869 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 31
32521802 TCCATATGTA
*
32521812 AAATTATACC-AT-ATCAAAATTTATGTATT
1 AAATTACACCTATGATCAAAATTTATGTATT
* *
32521841 AAATTACACCTTTGATTAAAATTTATGTA
1 AAATTACACCTATGATCAAAATTTATGTA
32521870 GAATTTTTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 9 0.38
30 1 0.04
31 14 0.58
ACGTcount: A:0.43, C:0.10, G:0.05, T:0.41
Consensus pattern (31 bp):
AAATTACACCTATGATCAAAATTTATGTATT
Found at i:32524301 original size:31 final size:31
Alignment explanation
Indices: 32524243--32524301 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
32524233 ACGAAGGCAT
*
32524243 CCTTTACATCTAGTACTCAACATAAAGGTAA
1 CCTTTACATCTAGTACTCAACACAAAGGTAA
**
32524274 CCTTTACATCTAGTACTCGCCACAAAGG
1 CCTTTACATCTAGTACTCAACACAAAGG
32524302 CTTTTCTATC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.34, C:0.27, G:0.12, T:0.27
Consensus pattern (31 bp):
CCTTTACATCTAGTACTCAACACAAAGGTAA
Found at i:32524331 original size:60 final size:61
Alignment explanation
Indices: 32524266--32524479 Score: 198
Period size: 60 Copynumber: 3.7 Consensus size: 61
32524256 TACTCAACAT
* * *
32524266 AAAGGTAACCTTTACATCTAGTACTCGCCACAAAGGCTTTTC-TATCTAGAGTTTTGCCAC
1 AAAGGCAACCTTTACATCTAGTACTCGCCACAAAGGCTTTTCTTGTCCAGAGTTTTGCCAC
* * *
32524326 AAAGGTAAACTTT--A-C-A--ACTCGCCACAAAGG-TTTTCTTGTCCAGAGTTTTACCAC
1 AAAGGCAACCTTTACATCTAGTACTCGCCACAAAGGCTTTTCTTGTCCAGAGTTTTGCCAC
* * * *
32524380 AAAGACATA-CTTTACATCTAGTATTC-CACACAAAGGC-TTTCTTGTCCAAAATTTTGCCAC
1 AAAGGCA-ACCTTTACATCTAGTACTCGC-CACAAAGGCTTTTCTTGTCCAGAGTTTTGCCAC
* * * * *
32524440 AAAGGCATCATTTACATCCAGTACTCACCACAAATGCTTT
1 AAAGGCAACCTTTACATCTAGTACTCGCCACAAAGGCTTT
32524480 CCCTTAAGAG
Statistics
Matches: 125, Mismatches: 16, Indels: 25
0.75 0.10 0.15
Matches are distributed among these distances:
53 5 0.04
54 38 0.30
55 1 0.01
56 2 0.02
57 2 0.02
58 2 0.02
59 1 0.01
60 71 0.57
61 3 0.02
ACGTcount: A:0.32, C:0.25, G:0.13, T:0.30
Consensus pattern (61 bp):
AAAGGCAACCTTTACATCTAGTACTCGCCACAAAGGCTTTTCTTGTCCAGAGTTTTGCCAC
Found at i:32524392 original size:54 final size:54
Alignment explanation
Indices: 32524288--32524395 Score: 146
Period size: 54 Copynumber: 2.0 Consensus size: 54
32524278 TACATCTAGT
* * **
32524288 ACTCGCCACAAAGGCTTTTCTATCTAGAGTTTTGCCACAAAGGTAAACTTTACA
1 ACTCGCCACAAAGGCTTTTCTATCCAGAGTTTTACCACAAAGACAAACTTTACA
* *
32524342 ACTCGCCACAAAGG-TTTTCTTGTCCAGAGTTTTACCACAAAGACATACTTTACA
1 ACTCGCCACAAAGGCTTTTC-TATCCAGAGTTTTACCACAAAGACAAACTTTACA
32524396 TCTAGTATTC
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
53 5 0.11
54 42 0.89
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (54 bp):
ACTCGCCACAAAGGCTTTTCTATCCAGAGTTTTACCACAAAGACAAACTTTACA
Found at i:32525933 original size:56 final size:56
Alignment explanation
Indices: 32525847--32525981 Score: 218
Period size: 56 Copynumber: 2.4 Consensus size: 56
32525837 CCATGGCATT
*
32525847 GATATATGTGAGCGAGTAAGACCACATTTAATACGTTGGCATCGATAAGTGATTCC
1 GATATATGTGTGCGAGTAAGACCACATTTAATACGTTGGCATCGATAAGTGATTCC
* *
32525903 GATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCC
1 GATATATGTGTGCGAGTAAGACCACATTTAATACGTTGGCATCGATAAGTGATTCC
*
32525959 -ATCATATGTGTACGAGTAAGACC
1 GAT-ATATGTGTGCGAGTAAGACC
32525982 CTATCTAGGA
Statistics
Matches: 74, Mismatches: 4, Indels: 2
0.93 0.05 0.03
Matches are distributed among these distances:
55 2 0.03
56 72 0.97
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (56 bp):
GATATATGTGTGCGAGTAAGACCACATTTAATACGTTGGCATCGATAAGTGATTCC
Found at i:32526001 original size:56 final size:56
Alignment explanation
Indices: 32525847--32526012 Score: 180
Period size: 56 Copynumber: 3.0 Consensus size: 56
32525837 CCATGGCATT
* * * *
32525847 GATATATGTG-AGCGAGTAAGACCACATTTAATACGTTGGCATCGATAAGTGATTCC
1 GATATATGTGTA-CGAGTAAGACCACGTTTAAGACGTTAGCATCGATATGTGATTCC
* * *
32525903 GATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCC
1 GATATATGTGTACGAGTAAGACCACGTTTAAGACGTTAGCATCGATATGTGATTCC
*
32525959 -ATCATATGTGTACGAGTAAGACC-C-TATCTAGGACAG-TAGCATCGATATGTGATT
1 GAT-ATATGTGTACGAGTAAGACCACGT-T-TAAGAC-GTTAGCATCGATATGTGATT
32526013 ACATGTAAGA
Statistics
Matches: 98, Mismatches: 7, Indels: 10
0.85 0.06 0.09
Matches are distributed among these distances:
54 1 0.01
55 4 0.04
56 92 0.94
57 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.30
Consensus pattern (56 bp):
GATATATGTGTACGAGTAAGACCACGTTTAAGACGTTAGCATCGATATGTGATTCC
Found at i:32528224 original size:37 final size:37
Alignment explanation
Indices: 32528165--32528273 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
32528155 AGCTCAGACG
* *
32528165 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
32528202 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
32528239 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
32528274 ATATATTTCC
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:32528409 original size:50 final size:50
Alignment explanation
Indices: 32528333--32528467 Score: 234
Period size: 50 Copynumber: 2.7 Consensus size: 50
32528323 ATCGACTGTC
* * *
32528333 ATATTTCACACTAGCCATTCGACTTTACCACATATACATATCTCATATAT
1 ATATTTCACATTAACCATTCGGCTTTACCACATATACATATCTCATATAT
32528383 ATATTTCACATTAACCATTCGGCTTTACCACATATACATATCTCATATAT
1 ATATTTCACATTAACCATTCGGCTTTACCACATATACATATCTCATATAT
*
32528433 ATATTTCACATTGACCATTCGGCTTTACCACATAT
1 ATATTTCACATTAACCATTCGGCTTTACCACATAT
32528468 GCATGTTCAT
Statistics
Matches: 81, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
50 81 1.00
ACGTcount: A:0.33, C:0.25, G:0.05, T:0.37
Consensus pattern (50 bp):
ATATTTCACATTAACCATTCGGCTTTACCACATATACATATCTCATATAT
Found at i:32528529 original size:47 final size:47
Alignment explanation
Indices: 32528438--32528629 Score: 298
Period size: 47 Copynumber: 4.1 Consensus size: 47
32528428 TATATATATT
* * * *
32528438 TCACATTGACCATTCGGCTTTA-C-CACATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
*
32528483 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
*
32528530 TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
* *
32528577 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
32528624 TCACAT
1 TCACAT
32528630 AAAATCCTAA
Statistics
Matches: 137, Mismatches: 8, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
45 19 0.14
46 1 0.01
47 117 0.85
ACGTcount: A:0.26, C:0.30, G:0.12, T:0.32
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
Found at i:32528556 original size:22 final size:22
Alignment explanation
Indices: 32528529--32528604 Score: 66
Period size: 22 Copynumber: 3.3 Consensus size: 22
32528519 GCTCACATTC
32528529 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
32528551 ATCACATATATG-CATGCTC-ACATT
1 ATCACAT-T-GGCCAT--TCGGCCTT
32528575 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
32528598 ATCACAT
1 ATCACAT
32528605 ATATGCATGT
Statistics
Matches: 41, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
22 16 0.39
23 8 0.20
24 8 0.20
25 9 0.22
ACGTcount: A:0.25, C:0.30, G:0.13, T:0.32
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:32536200 original size:26 final size:26
Alignment explanation
Indices: 32536168--32536225 Score: 107
Period size: 26 Copynumber: 2.2 Consensus size: 26
32536158 TAGAGCTTTG
*
32536168 TATGTTATTTGATGAAATATGAAAGA
1 TATGTTAGTTGATGAAATATGAAAGA
32536194 TATGTTAGTTGATGAAATATGAAAGA
1 TATGTTAGTTGATGAAATATGAAAGA
32536220 TATGTT
1 TATGTT
32536226 TTGGATTAAC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.40, C:0.00, G:0.21, T:0.40
Consensus pattern (26 bp):
TATGTTAGTTGATGAAATATGAAAGA
Found at i:32536948 original size:56 final size:57
Alignment explanation
Indices: 32536861--32536996 Score: 222
Period size: 56 Copynumber: 2.4 Consensus size: 57
32536851 AACATGGCAT
*
32536861 CGATATATGTGTGCGGGTAAGA-CGACATTTAATACGTTGGCATCGATATGTGATTC
1 CGATATATGTGTGCGAGTAAGACCGACATTTAATACGTTGGCATCGATATGTGATTC
*
32536917 CGATATATGTGTGCGAGTAAGACCG-CGTTTAATACGTTGGCATCGATATGTGATTC
1 CGATATATGTGTGCGAGTAAGACCGACATTTAATACGTTGGCATCGATATGTGATTC
* *
32536973 CGTTATATGTGTACGAGTAAGACC
1 CGATATATGTGTGCGAGTAAGACC
32536997 CTATTTGGGA
Statistics
Matches: 75, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
56 73 0.97
57 2 0.03
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (57 bp):
CGATATATGTGTGCGAGTAAGACCGACATTTAATACGTTGGCATCGATATGTGATTC
Found at i:32537014 original size:56 final size:56
Alignment explanation
Indices: 32536861--32537027 Score: 205
Period size: 56 Copynumber: 3.0 Consensus size: 56
32536851 AACATGGCAT
* * *
32536861 CGATATATGTGTGCGGGTAAGA-CGACATTTAATACGTTGGCATCGATATGTGATTC
1 CGATATATGTGTACGAGTAAGACCG-CATTTAAGACGTTGGCATCGATATGTGATTC
* * *
32536917 CGATATATGTGTGCGAGTAAGACCGCGTTTAATACGTTGGCATCGATATGTGATTC
1 CGATATATGTGTACGAGTAAGACCGCATTTAAGACGTTGGCATCGATATGTGATTC
* **
32536973 CGTTATATGTGTACGAGTAAGACC-CTATTTGGGACAG-TGGCATCGATATGTGATT
1 CGATATATGTGTACGAGTAAGACCGC-ATTTAAGAC-GTTGGCATCGATATGTGATT
32537028 ACATGTAAGA
Statistics
Matches: 100, Mismatches: 8, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
55 1 0.01
56 96 0.96
57 3 0.03
ACGTcount: A:0.26, C:0.15, G:0.27, T:0.32
Consensus pattern (56 bp):
CGATATATGTGTACGAGTAAGACCGCATTTAAGACGTTGGCATCGATATGTGATTC
Found at i:32538209 original size:85 final size:85
Alignment explanation
Indices: 32538066--32538237 Score: 317
Period size: 85 Copynumber: 2.0 Consensus size: 85
32538056 ATATTTGGGA
32538066 TGGTGAATCATAGTAAATTTTGGCTTAGTATTGAGATAAAATGATGGATATATATTTGAATCAAT
1 TGGTGAATCATAGTAAATTTTGGCTTAGTATTGAGATAAAATGATGGATATATATTTGAATCAAT
*
32538131 ATTGGATTATTATGTTCGGT
66 ATTGGATTATTATGTTCAGT
*
32538151 TGGTGAATGATAGTAAATTTTGGCTTAGTATTGAGATAAAATGATGGATATATATTTGAATCAAT
1 TGGTGAATCATAGTAAATTTTGGCTTAGTATTGAGATAAAATGATGGATATATATTTGAATCAAT
*
32538216 ATTGGCTTATTATGTTCAGT
66 ATTGGATTATTATGTTCAGT
32538236 TG
1 TG
32538238 CTAAATGTCA
Statistics
Matches: 84, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
85 84 1.00
ACGTcount: A:0.33, C:0.05, G:0.22, T:0.41
Consensus pattern (85 bp):
TGGTGAATCATAGTAAATTTTGGCTTAGTATTGAGATAAAATGATGGATATATATTTGAATCAAT
ATTGGATTATTATGTTCAGT
Found at i:32543537 original size:48 final size:48
Alignment explanation
Indices: 32543478--32543692 Score: 204
Period size: 48 Copynumber: 4.5 Consensus size: 48
32543468 GTCAAGGATG
* * *
32543478 ATGGTCTTACACTAGCTCTTGTCTCAATACCGATGCCATGTCCCAGAC
1 ATGGTCTTACACTAGCTCTTATATCAATACCGATGCCATGTCCCAAAC
* *
32543526 ATGGTCTTACACTAGCTCTTATA--ATGTAGCCGATGCTATGTCCCAAAC
1 ATGGTCTTACACTAGCTCTTATATCA-ATA-CCGATGCCATGTCCCAAAC
* ** * * * * *
32543574 ATGGTCTTACACTAGCGCACATATCAACATCGATGCCATATCCTAGAC
1 ATGGTCTTACACTAGCTCTTATATCAATACCGATGCCATGTCCCAAAC
* * * *
32543622 ATGGTTTTACA-TAGGCTCTCATAGC-ATCACCGATGCCATGTTCCAAAC
1 ATGGTCTTACACTA-GCTCTTATATCAAT-ACCGATGCCATGTCCCAAAC
*
32543670 ATGGTCTTACACTGGCTCTTATA
1 ATGGTCTTACACTAGCTCTTATA
32543693 ATGTGGCTGA
Statistics
Matches: 132, Mismatches: 28, Indels: 14
0.76 0.16 0.08
Matches are distributed among these distances:
46 1 0.01
47 5 0.04
48 123 0.93
49 2 0.02
50 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.30
Consensus pattern (48 bp):
ATGGTCTTACACTAGCTCTTATATCAATACCGATGCCATGTCCCAAAC
Found at i:32543655 original size:96 final size:96
Alignment explanation
Indices: 32543508--32543682 Score: 239
Period size: 96 Copynumber: 1.8 Consensus size: 96
32543498 GTCTCAATAC
* * * *
32543508 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTTATAATGTAGCCGATGCTATGTCCCAAA
1 CGATGCCATATCCCAGACATGGTCTTACACTAGCTCTCATAATGCAGCCGATGCCATGTCCCAAA
32543573 CATGGTCTTACACTAGCGCACATATCAACAT
66 CATGGTCTTACACTAGCGCACATATCAACAT
* * *
32543604 CGATGCCATATCCTAGACATGGTTTTACA-TAGGCTCTCATAGCAT-CA-CCGATGCCATGTTCC
1 CGATGCCATATCCCAGACATGGTCTTACACTA-GCTCTCATA--ATGCAGCCGATGCCATGTCCC
32543666 AAACATGGTCTTACACT
63 AAACATGGTCTTACACT
32543683 GGCTCTTATA
Statistics
Matches: 69, Mismatches: 7, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
95 2 0.03
96 64 0.93
97 1 0.01
98 2 0.03
ACGTcount: A:0.27, C:0.28, G:0.17, T:0.28
Consensus pattern (96 bp):
CGATGCCATATCCCAGACATGGTCTTACACTAGCTCTCATAATGCAGCCGATGCCATGTCCCAAA
CATGGTCTTACACTAGCGCACATATCAACAT
Found at i:32543705 original size:48 final size:48
Alignment explanation
Indices: 32543478--32543729 Score: 185
Period size: 48 Copynumber: 5.2 Consensus size: 48
32543468 GTCAAGGATG
* ** * * *
32543478 ATGGTCTTACACTA-GCTCTTGTCTCAATACCGATGCCATGTCCCAGAC
1 ATGGTCTTACACTAGGCTCTTATAAC-ATGCCGATGCCATGTTCCAAAC
** * *
32543526 ATGGTCTTACACTA-GCTCTTATAATGTAGCCGATGCTATGTCCCAAAC
1 ATGGTCTTACACTAGGCTCTTATAACAT-GCCGATGCCATGTTCCAAAC
* * * *
32543574 ATGGTCTTACACTAGCGCACATATCAACAT--CGATGCCAT-ATCCTAGAC
1 ATGGTCTTACACTAG-GCTCTTAT-AACATGCCGATGCCATGTTCC-AAAC
* * * *
32543622 ATGGTTTTACA-TAGGCTCTCATAGCATCACCGATGCCATGTTCCAAAC
1 ATGGTCTTACACTAGGCTCTTATAACAT-GCCGATGCCATGTTCCAAAC
** * * *
32543670 ATGGTCTTACACT-GGCTCTTATAATGTGGCTGATGCCTTGTTTCAAAC
1 ATGGTCTTACACTAGGCTCTTATAACAT-GCCGATGCCATGTTCCAAAC
32543718 ATGGTCTTACAC
1 ATGGTCTTACAC
32543730 GAGCGCACAA
Statistics
Matches: 161, Mismatches: 33, Indels: 20
0.75 0.15 0.09
Matches are distributed among these distances:
45 4 0.02
46 5 0.03
47 6 0.04
48 133 0.83
49 4 0.02
50 6 0.04
51 3 0.02
ACGTcount: A:0.26, C:0.27, G:0.17, T:0.31
Consensus pattern (48 bp):
ATGGTCTTACACTAGGCTCTTATAACATGCCGATGCCATGTTCCAAAC
Found at i:32546655 original size:38 final size:38
Alignment explanation
Indices: 32546612--32546708 Score: 149
Period size: 38 Copynumber: 2.6 Consensus size: 38
32546602 GATACTCGAG
* *
32546612 AAATGCTCACACGAGTTGTGATTGTATCATATAACCGT
1 AAATGCTCACACGAGTTGTGACTATATCATATAACCGT
* *
32546650 AAATGCTCACATGAGTTGTGACTATATCATGTAACCGT
1 AAATGCTCACACGAGTTGTGACTATATCATATAACCGT
*
32546688 CAATGCTCACACGAGTTGTGA
1 AAATGCTCACACGAGTTGTGA
32546709 AATGAGTTTA
Statistics
Matches: 53, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
38 53 1.00
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.30
Consensus pattern (38 bp):
AAATGCTCACACGAGTTGTGACTATATCATATAACCGT
Found at i:32549910 original size:17 final size:17
Alignment explanation
Indices: 32549888--32549922 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
32549878 TCTATTTGCT
32549888 ATGTCTTTATAATTGAG
1 ATGTCTTTATAATTGAG
32549905 ATGTCTTTATAATTGAG
1 ATGTCTTTATAATTGAG
32549922 A
1 A
32549923 GGTCCTTATG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.31, C:0.06, G:0.17, T:0.46
Consensus pattern (17 bp):
ATGTCTTTATAATTGAG
Found at i:32549931 original size:17 final size:17
Alignment explanation
Indices: 32549894--32549931 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
32549884 TGCTATGTCT
* *
32549894 TTATAATTGAGATGTCT
1 TTATAATTGAGAGGTCC
32549911 TTATAATTGAGAGGTCC
1 TTATAATTGAGAGGTCC
32549928 TTAT
1 TTAT
32549932 GTTGTTATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.29, C:0.08, G:0.18, T:0.45
Consensus pattern (17 bp):
TTATAATTGAGAGGTCC
Found at i:32551034 original size:42 final size:42
Alignment explanation
Indices: 32550910--32551082 Score: 140
Period size: 43 Copynumber: 4.0 Consensus size: 42
32550900 TAGGATCCGA
* *
32550910 TATGTG-TTATCGTGTAAGACCACATCTGGGAC-GTTGGCATTG
1 TATGTGATT-TCGTGTAAGACCACGTCTGGGACAG-TGGCATCG
* *
32550952 -ACTTATGATTTACGTGTAAGACCACGTCTGGGA-TGTTGGCATCG
1 TA--TGTGATTT-CGTGTAAGACCACGTCTGGGACAG-TGGCATCG
* * * *
32550996 TGTTTGATTTCGTGTAAGACC-CTGTCTTGGACAGTGGCATCAA
1 TATGTGATTTCGTGTAAGACCAC-GTCTGGGACAGTGGCATC-G
* * *
32551039 TATGTGATTACATGTAAGACCACGTCTGGGACATTGGCATCG
1 TATGTGATTTCGTGTAAGACCACGTCTGGGACAGTGGCATCG
32551081 TA
1 TA
32551083 CAAGCTTTCC
Statistics
Matches: 106, Mismatches: 15, Indels: 20
0.75 0.11 0.14
Matches are distributed among these distances:
41 2 0.02
42 27 0.25
43 45 0.42
44 32 0.30
ACGTcount: A:0.23, C:0.18, G:0.27, T:0.32
Consensus pattern (42 bp):
TATGTGATTTCGTGTAAGACCACGTCTGGGACAGTGGCATCG
Found at i:32553506 original size:42 final size:41
Alignment explanation
Indices: 32553378--32553538 Score: 126
Period size: 42 Copynumber: 3.9 Consensus size: 41
32553368 ACACATAGAA
* * * *
32553378 TCATATCAATGCCATATCACAAATATGGTCTTACATGGGATC
1 TCATATCAATGCCATATCCCAGACATGGTCTTACAT-GAATC
* * * * *
32553420 TCATATCGATGCCAATAACCCAG-CTATGGTTTTACACGATTC
1 TCATATCAATGCC-ATATCCCAGAC-ATGGTCTTACATGAATC
* *
32553462 TCATATCAATGCCATGTCCCAGACATGGTCCTACATGAAATC
1 TCATATCAATGCCATATCCCAGACATGGTCTTACATG-AATC
* * * * * *
32553504 TCATAACGATTCCGTATCCCAGATATGCTCTTACA
1 TCATATCAATGCCATATCCCAGACATGGTCTTACA
32553539 CGTAAACTCA
Statistics
Matches: 91, Mismatches: 24, Indels: 8
0.74 0.20 0.07
Matches are distributed among these distances:
41 17 0.19
42 58 0.64
43 16 0.18
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.30
Consensus pattern (41 bp):
TCATATCAATGCCATATCCCAGACATGGTCTTACATGAATC
Found at i:32553549 original size:84 final size:84
Alignment explanation
Indices: 32553378--32553550 Score: 186
Period size: 84 Copynumber: 2.1 Consensus size: 84
32553368 ACACATAGAA
* * ** *
32553378 TCATATCAATGCCATATCACAAATATGGTCTTACATGGGATCTCATATCGATGCCAATAACCCAG
1 TCATATCAATGCCATATCACAAACATGGTCCTACATGAAATCTCATAACGATGCCAATAACCCAG
* * * **
32553443 CTATGGTTTTACACGATTC
66 ATATGCTCTTACACGAAAC
* * * * * *
32553462 TCATATCAATGCCATGTCCCAGACATGGTCCTACATGAAATCTCATAACGATTCC-GTATCCCAG
1 TCATATCAATGCCATATCACAAACATGGTCCTACATGAAATCTCATAACGATGCCAATAACCCAG
32553526 ATATGCTCTTACACGTAAAC
66 ATATGCTCTTACACG-AAAC
32553546 TCATA
1 TCATA
32553551 ACCCTAGTGT
Statistics
Matches: 72, Mismatches: 16, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
83 19 0.26
84 53 0.74
ACGTcount: A:0.31, C:0.26, G:0.13, T:0.29
Consensus pattern (84 bp):
TCATATCAATGCCATATCACAAACATGGTCCTACATGAAATCTCATAACGATGCCAATAACCCAG
ATATGCTCTTACACGAAAC
Found at i:32559743 original size:34 final size:34
Alignment explanation
Indices: 32559683--32559748 Score: 107
Period size: 34 Copynumber: 1.9 Consensus size: 34
32559673 ATTCCAGTTA
*
32559683 GGGCCTTAGCCCATTACAGTATCAGTATCAGTGT
1 GGGCCTTAGCCCATTACAGTATCAGTAACAGTGT
32559717 GGGCCTTAGCCCATTACAGTGA-CAGTAACAGT
1 GGGCCTTAGCCCATTACAGT-ATCAGTAACAGT
32559749 ACAGAATGCA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
34 29 0.97
35 1 0.03
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (34 bp):
GGGCCTTAGCCCATTACAGTATCAGTAACAGTGT
Found at i:32569182 original size:64 final size:64
Alignment explanation
Indices: 32569103--32569230 Score: 247
Period size: 64 Copynumber: 2.0 Consensus size: 64
32569093 AGCGGCGATG
*
32569103 GACACCGATGTTGTACCAGGCAGGAGCTCAATCCCAAACTTAACTTCACGGTTTGAAGGTAACC
1 GACACCGATGTTGTACCAGGCAGGACCTCAATCCCAAACTTAACTTCACGGTTTGAAGGTAACC
32569167 GACACCGATGTTGTACCAGGCAGGACCTCAATCCCAAACTTAACTTCACGGTTTGAAGGTAACC
1 GACACCGATGTTGTACCAGGCAGGACCTCAATCCCAAACTTAACTTCACGGTTTGAAGGTAACC
32569231 TAAGTAGCTC
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
64 63 1.00
ACGTcount: A:0.30, C:0.27, G:0.21, T:0.22
Consensus pattern (64 bp):
GACACCGATGTTGTACCAGGCAGGACCTCAATCCCAAACTTAACTTCACGGTTTGAAGGTAACC
Found at i:32569913 original size:27 final size:27
Alignment explanation
Indices: 32569852--32569904 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
32569842 TCATATATCT
32569852 CATAGGGGCATAACAATCATTTTATTA
1 CATAGGGGCATAACAATCATTTTATTA
* * *
32569879 CACAGGGGCATAATAGTCATTTTATT
1 CATAGGGGCATAACAATCATTTTATT
32569905 GATTAGGGGT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.34
Consensus pattern (27 bp):
CATAGGGGCATAACAATCATTTTATTA
Found at i:32576031 original size:40 final size:40
Alignment explanation
Indices: 32575987--32576077 Score: 130
Period size: 40 Copynumber: 2.3 Consensus size: 40
32575977 ACTATGTTTG
**
32575987 GCACTTAGTGTGTGATTC-GAGATAGCTTTGGCTATATATA
1 GCACTTAGTGTGTGATTCAGA-ATAGCTTCAGCTATATATA
*
32576027 GCACTTAGTGTGTGATTCAGAATAGCTTCAGCTATATATG
1 GCACTTAGTGTGTGATTCAGAATAGCTTCAGCTATATATA
*
32576067 GCATTTAGTGT
1 GCACTTAGTGT
32576078 CCAAGACCGA
Statistics
Matches: 46, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
40 44 0.96
41 2 0.04
ACGTcount: A:0.25, C:0.13, G:0.24, T:0.37
Consensus pattern (40 bp):
GCACTTAGTGTGTGATTCAGAATAGCTTCAGCTATATATA
Found at i:32589436 original size:46 final size:46
Alignment explanation
Indices: 32589376--32589695 Score: 480
Period size: 46 Copynumber: 7.0 Consensus size: 46
32589366 TTTGACATGA
* * * * *
32589376 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TATCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
*** *
32589422 TGCCATGGTATCTTTCAACCATGGTCTTGTTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*** *
32589468 TGCCATGGTATCTTTCAACCATGGTCTTGTTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
32589514 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
* *
32589560 TGCCATGGTATCTTTCAGCCATGGTCTTACGCATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
32589606 TGCCATGGTATCTTTCAACCATGATCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
32589652 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
32589696 AGAGCACACT
Statistics
Matches: 257, Mismatches: 16, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
45 4 0.02
46 253 0.98
ACGTcount: A:0.22, C:0.24, G:0.15, T:0.39
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:32591670 original size:11 final size:11
Alignment explanation
Indices: 32591654--32591692 Score: 69
Period size: 11 Copynumber: 3.5 Consensus size: 11
32591644 ACTAAATAAT
32591654 TAATAATGAAA
1 TAATAATGAAA
32591665 TAATAATGAAA
1 TAATAATGAAA
*
32591676 TAATAATAAAA
1 TAATAATGAAA
32591687 TAATAA
1 TAATAA
32591693 AATATCTCAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.05, T:0.28
Consensus pattern (11 bp):
TAATAATGAAA
Found at i:32591719 original size:20 final size:21
Alignment explanation
Indices: 32591666--32591741 Score: 68
Period size: 20 Copynumber: 3.7 Consensus size: 21
32591656 ATAATGAAAT
* *
32591666 AATAATGAAATA-ATAA-TAA
1 AATAATAAAATATCTAATTAA
*
32591685 AATAATAAAATATCTCATTAA
1 AATAATAAAATATCTAATTAA
*
32591706 AATAAT-ATATATCTAATTAAA
1 AATAATAAAATATCTAATT-AA
*
32591727 TAATCATAAAATATC
1 -AATAATAAAATATC
32591742 ATCAACATCA
Statistics
Matches: 45, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
19 11 0.24
20 12 0.27
21 11 0.24
22 5 0.11
23 6 0.13
ACGTcount: A:0.59, C:0.07, G:0.01, T:0.33
Consensus pattern (21 bp):
AATAATAAAATATCTAATTAA
Found at i:32596650 original size:86 final size:86
Alignment explanation
Indices: 32596526--32596698 Score: 231
Period size: 86 Copynumber: 2.0 Consensus size: 86
32596516 GAGGATACAT
* * *
32596526 TGTGTGTGCCAATATAGATGCTTCAGTTTATTCAATGATGCA-TAGTCTGTGCTAGTATAGTTAC
1 TGTGTGTGCCAATATAGATGCTTCAGTTTATCCAATGATGCACTA-TCTGTACCAGTATAGTTAC
**
32596590 TTCGGTTTATCTGATGATGCAC
65 TTCGGTACATCTGATGATGCAC
* * * * *
32596612 TGTGTGTGCCAGTATAGATGCTTCGGTTTATCCTATGATGCACTATGTGTACCAGTATAGTTGCT
1 TGTGTGTGCCAATATAGATGCTTCAGTTTATCCAATGATGCACTATCTGTACCAGTATAGTTACT
*
32596677 TTGGTACATCTGATGATGCAC
66 TCGGTACATCTGATGATGCAC
32596698 T
1 T
32596699 TTCTATGCCA
Statistics
Matches: 75, Mismatches: 11, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
86 73 0.97
87 2 0.03
ACGTcount: A:0.22, C:0.16, G:0.23, T:0.39
Consensus pattern (86 bp):
TGTGTGTGCCAATATAGATGCTTCAGTTTATCCAATGATGCACTATCTGTACCAGTATAGTTACT
TCGGTACATCTGATGATGCAC
Found at i:32596710 original size:43 final size:43
Alignment explanation
Indices: 32596528--32596698 Score: 177
Period size: 43 Copynumber: 4.0 Consensus size: 43
32596518 GGATACATTG
* * * *
32596528 TGTGTGCCAATATAGATGCTTCAGTTTAT-TCAATGATGCA-TA
1 TGTGTGCCAGTATAGTTGCTTCGGTTTATCT-GATGATGCACTA
* * * *
32596570 GTCTGTGCTAGTATAGTTACTTCGGTTTATCTGATGATGCACTG
1 -TGTGTGCCAGTATAGTTGCTTCGGTTTATCTGATGATGCACTA
*
32596614 TGTGTGCCAGTATAGATGCTTCGGTTTATCCT-ATGATGCACTA
1 TGTGTGCCAGTATAGTTGCTTCGGTTTAT-CTGATGATGCACTA
* * **
32596657 TGTGTACCAGTATAGTTGCTTTGGTACATCTGATGATGCACT
1 TGTGTGCCAGTATAGTTGCTTCGGTTTATCTGATGATGCACT
32596699 TTCTATGCCA
Statistics
Matches: 106, Mismatches: 18, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
42 2 0.02
43 100 0.94
44 4 0.04
ACGTcount: A:0.22, C:0.16, G:0.23, T:0.39
Consensus pattern (43 bp):
TGTGTGCCAGTATAGTTGCTTCGGTTTATCTGATGATGCACTA
Found at i:32598249 original size:48 final size:48
Alignment explanation
Indices: 32598168--32598291 Score: 185
Period size: 48 Copynumber: 2.6 Consensus size: 48
32598158 ATACTAGGGT
* *
32598168 TATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCGTCGGCCTCGA
1 TATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATCGA
* * **
32598216 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTTA
1 TATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATCGA
*
32598264 TATGAGAGCTAGTGCAAGACCATGTTTG
1 TATGAGAGCTAGTGTAAGACCATGTTTG
32598292 TAACGCCCCG
Statistics
Matches: 67, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 67 1.00
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.27
Consensus pattern (48 bp):
TATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATCGA
Found at i:32599760 original size:93 final size:93
Alignment explanation
Indices: 32599601--32599772 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
32599591 GCCCATAAGT
* * * *
32599601 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACCCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
32599666 CGAGCTCGGATGCCAAGTTACATCTCTC
66 CGAGCTCGGATGCCAAGTTACATCTCTC
* *
32599694 GAACTCGGACCCAACTCAACAAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACCCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
32599759 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
32599773 CAAACATCCT
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.20
Consensus pattern (93 bp):
GAACTCGGACCCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCAAGTTACATCTCTC
Found at i:32599768 original size:46 final size:46
Alignment explanation
Indices: 32599593--32599768 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
32599583 TGTAACCCGC
* * *
32599593 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
* *
32599639 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCAAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA---C-ATTTGCAT
* * * *
32599689 CTC-T---CGAACTCGGACCCAACTCAACAAGTTCGGACATTTGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
*
32599732 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
32599769 TGCCCAAACA
Statistics
Matches: 107, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 1 0.01
43 8 0.07
44 1 0.01
46 63 0.59
47 26 0.24
49 1 0.01
50 6 0.06
51 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
Found at i:32601225 original size:31 final size:31
Alignment explanation
Indices: 32601187--32601250 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
32601177 CCTTTTCATA
*
32601187 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCAAAGCCT
**
32601218 TTTCATATTTCATATTACTGGGCCAAAGCCT
1 TTTCATATTTCATAACACTGGGCCAAAGCCT
32601249 TT
1 TT
32601251 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.14, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCAAAGCCT
Found at i:32601495 original size:24 final size:24
Alignment explanation
Indices: 32601444--32601585 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
32601434 GCTTTATCAT
*
32601444 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
32601469 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
32601493 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
32601516 ATAACTGAGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
32601540 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
32601563 ATAACTGGTGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
32601586 TCACTTCCTC
Statistics
Matches: 108, Mismatches: 6, Indels: 7
0.89 0.05 0.06
Matches are distributed among these distances:
23 44 0.41
24 52 0.48
25 12 0.11
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:32601519 original size:23 final size:23
Alignment explanation
Indices: 32601465--32601584 Score: 195
Period size: 23 Copynumber: 5.1 Consensus size: 23
32601455 CCTAGCCTCT
*
32601465 TTTAATAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
32601488 TTTTAATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
*
32601512 TTTAATAACTGAGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
32601535 TTTTAATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
*
32601559 TTTAATAACTGGTGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
32601582 TTT
1 TTT
32601585 TTCACTTCCT
Statistics
Matches: 91, Mismatches: 4, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
23 47 0.52
24 44 0.48
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.29
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:32601519 original size:47 final size:47
Alignment explanation
Indices: 32601465--32601585 Score: 215
Period size: 47 Copynumber: 2.6 Consensus size: 47
32601455 CCTAGCCTCT
*
32601465 TTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
*
32601512 TTTAATAACTGAGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
*
32601559 TTTAATAACTGGTGCATAAGCCCTTTT
1 TTTAATAACTGGGGCATAAGCCCTTTT
32601586 TCACTTCCTC
Statistics
Matches: 70, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 70 1.00
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.30
Consensus pattern (47 bp):
TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
Found at i:32601662 original size:20 final size:20
Alignment explanation
Indices: 32601637--32601701 Score: 112
Period size: 20 Copynumber: 3.2 Consensus size: 20
32601627 ATGAATACAG
32601637 CATGTGCATATCATACATAT
1 CATGTGCATATCATACATAT
*
32601657 CATGTGCATATCATACATGT
1 CATGTGCATATCATACATAT
*
32601677 CATGTGCATATCATACATAC
1 CATGTGCATATCATACATAT
32601697 CATGT
1 CATGT
32601702 TTATCAAAAT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.32, C:0.22, G:0.12, T:0.34
Consensus pattern (20 bp):
CATGTGCATATCATACATAT
Found at i:32601668 original size:11 final size:11
Alignment explanation
Indices: 32601637--32601690 Score: 53
Period size: 11 Copynumber: 5.3 Consensus size: 11
32601627 ATGAATACAG
32601637 CATGTGCATAT
1 CATGTGCATAT
*
32601648 CA--TACATAT
1 CATGTGCATAT
32601657 CATGTGCATAT
1 CATGTGCATAT
* *
32601668 CA--TACATGT
1 CATGTGCATAT
32601677 CATGTGCATAT
1 CATGTGCATAT
32601688 CAT
1 CAT
32601691 ACATACCATG
Statistics
Matches: 33, Mismatches: 6, Indels: 8
0.70 0.13 0.17
Matches are distributed among these distances:
9 15 0.45
11 18 0.55
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.35
Consensus pattern (11 bp):
CATGTGCATAT
Found at i:32601766 original size:25 final size:24
Alignment explanation
Indices: 32601738--32601785 Score: 69
Period size: 25 Copynumber: 2.0 Consensus size: 24
32601728 ATACATAAAC
* *
32601738 CCTAGGGGTATAATGGTCAATTTTA
1 CCTAGGGGTAAAACGGTC-ATTTTA
32601763 CCTAGGGGTAAAACGGTCATTTT
1 CCTAGGGGTAAAACGGTCATTTT
32601786 CACGTTATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 5 0.24
25 16 0.76
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.33
Consensus pattern (24 bp):
CCTAGGGGTAAAACGGTCATTTTA
Found at i:32604165 original size:48 final size:48
Alignment explanation
Indices: 32604087--32604306 Score: 260
Period size: 48 Copynumber: 4.5 Consensus size: 48
32604077 GGATATTACA
* * * * *
32604087 ATGTTTGGGACATGGCATTGGCCTCAATATGTGAGCCAGTGTAAGACC
1 ATGTTTGGGACATGGCATCGGCATCTATATGAGAGCTAGTGTAAGACC
* *
32604135 ATGTTTGGAACATGGCATCGGCATTTATATGAGAGCTAGTGTAAGACC
1 ATGTTTGGGACATGGCATCGGCATCTATATGAGAGCTAGTGTAAGACC
* * * * *
32604183 ATGTCTGGGACATGGCATCGGCCTCGATATGTGAGCTAGTGTAATACC
1 ATGTTTGGGACATGGCATCGGCATCTATATGAGAGCTAGTGTAAGACC
* ** *
32604231 ATGTTTGGAACATGGCATCAACACCGATATATGAGAGCTAGTGTAAGACC
1 ATGTTTGGGACATGGCATCGGCATC--TATATGAGAGCTAGTGTAAGACC
* *
32604281 ATGTCTGGGACATGGCATGGGCATCT
1 ATGTTTGGGACATGGCATCGGCATCT
32604307 TACCTTTTGG
Statistics
Matches: 141, Mismatches: 29, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
48 102 0.72
50 39 0.28
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.27
Consensus pattern (48 bp):
ATGTTTGGGACATGGCATCGGCATCTATATGAGAGCTAGTGTAAGACC
Found at i:32608830 original size:50 final size:50
Alignment explanation
Indices: 32608583--32608874 Score: 232
Period size: 50 Copynumber: 5.8 Consensus size: 50
32608573 GTAACCAAAG
* * * *
32608583 CTATCTGGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACC-AA
1 CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAA
* * * * *
32608632 CAATCTAGTACACGTAGTAGCCTAG-ACTTAGTATTAAACACGTGACCTAA
1 CTATCTGGTACACATAGTAGCCT-GCACTTAGTACTACACACGTGACCTAA
* * * * * * * *
32608682 CCATCTGATACACGTATTAGCCTACAGTTAGTATTACACACGTGA-TTGAA
1 CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCT-AA
* * * * *
32608732 GT-TGTCGAGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAA
1 CTATCT-G-GTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAA
** *
32608783 CTATCTGGTACATGTAGTAGCCTGCACTTAGTACTACACACATGACCTAAA
1 CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCT-AA
* *** *
32608834 ATCATCTTAAACACATAGTAGCCTGCACATAGTACTACACA
1 CT-ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACA
32608875 TGTGTTCTCA
Statistics
Matches: 188, Mismatches: 45, Indels: 17
0.75 0.18 0.07
Matches are distributed among these distances:
49 40 0.21
50 77 0.41
51 36 0.19
52 35 0.19
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.26
Consensus pattern (50 bp):
CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAA
Found at i:32608857 original size:52 final size:50
Alignment explanation
Indices: 32608745--32608874 Score: 152
Period size: 52 Copynumber: 2.6 Consensus size: 50
32608735 GTCGAGTACG
** * **
32608745 CATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACTATCTGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACACACGACCTAAATATCTGAAACA
** * *
32608795 TGTAGTAGCCTGCACTTAGTACTACACACATGACCTAAAATCATCTTAAACA
1 CATAGTAGCCTGCACTTAGTACTACACACACGACCT-AAAT-ATCTGAAACA
*
32608847 CATAGTAGCCTGCACATAGTACTACACA
1 CATAGTAGCCTGCACTTAGTACTACACA
32608875 TGTGTTCTCA
Statistics
Matches: 66, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
50 31 0.47
51 3 0.05
52 32 0.48
ACGTcount: A:0.34, C:0.27, G:0.14, T:0.25
Consensus pattern (50 bp):
CATAGTAGCCTGCACTTAGTACTACACACACGACCTAAATATCTGAAACA
Found at i:32611054 original size:14 final size:14
Alignment explanation
Indices: 32611037--32611066 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
32611027 ATTTTTACCT
*
32611037 TTTAATTTTCTTAG
1 TTTAATTTACTTAG
32611051 TTTAATTTACTTAG
1 TTTAATTTACTTAG
32611065 TT
1 TT
32611067 AAAATCCAGC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.23, C:0.07, G:0.07, T:0.63
Consensus pattern (14 bp):
TTTAATTTACTTAG
Found at i:32624346 original size:35 final size:35
Alignment explanation
Indices: 32624297--32624387 Score: 137
Period size: 35 Copynumber: 2.6 Consensus size: 35
32624287 GTACATCATC
*
32624297 AATCCAACCATAACACGCCAATGCTCATAAAAGCT
1 AATCCAACCGTAACACGCCAATGCTCATAAAAGCT
* * * *
32624332 AATCCAACCGTAACACGCTAATGCTTATAAGAGTT
1 AATCCAACCGTAACACGCCAATGCTCATAAAAGCT
32624367 AATCCAACCGTAACACGCCAA
1 AATCCAACCGTAACACGCCAA
32624388 ATAGAGAGTA
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 50 1.00
ACGTcount: A:0.41, C:0.30, G:0.11, T:0.19
Consensus pattern (35 bp):
AATCCAACCGTAACACGCCAATGCTCATAAAAGCT
Found at i:32627917 original size:24 final size:27
Alignment explanation
Indices: 32627879--32627932 Score: 71
Period size: 25 Copynumber: 2.1 Consensus size: 27
32627869 TTCTCCTAAA
32627879 TTTCAAATTTATTT-GATTATTTAAT-T
1 TTTCAAATTTATTTGGATTA-TTAATAT
32627905 TTTC-AATTT-TTTGGATTATTAATAT
1 TTTCAAATTTATTTGGATTATTAATAT
32627930 TTT
1 TTT
32627933 ATGAAAATTG
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
24 8 0.31
25 14 0.54
26 4 0.15
ACGTcount: A:0.28, C:0.04, G:0.06, T:0.63
Consensus pattern (27 bp):
TTTCAAATTTATTTGGATTATTAATAT
Found at i:32631832 original size:48 final size:43
Alignment explanation
Indices: 32631719--32631879 Score: 130
Period size: 42 Copynumber: 3.7 Consensus size: 43
32631709 AGGTGCCAAA
* * * * * * *
32631719 GCCATGTCCCTGACATGGTCTTACATGGA-ACCACACATCGAT
1 GCCATGTCCCAGACATGGTCTTATACGAAGACCTCATATCGAC
* * *
32631761 GCCATATCCCAAATATGGTCTTATACGAAG-CCTCAAATCAGTGCCGAC
1 GCCATGTCCCAGACATGGTCTTATACGAAGACCTC--AT-A-T--CGAC
* * *
32631809 GCCATGTCCCAGACATGGTCTTATACG-GGACCTCATATTGAT
1 GCCATGTCCCAGACATGGTCTTATACGAAGACCTCATATCGAC
32631851 GCCATGTCCCAGACATGGTCTTATACGAA
1 GCCATGTCCCAGACATGGTCTTATACGAA
32631880 ATCACTTAAC
Statistics
Matches: 93, Mismatches: 17, Indels: 17
0.73 0.13 0.13
Matches are distributed among these distances:
42 54 0.58
44 2 0.02
45 2 0.02
46 3 0.03
47 1 0.01
48 31 0.33
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (43 bp):
GCCATGTCCCAGACATGGTCTTATACGAAGACCTCATATCGAC
Found at i:32631903 original size:90 final size:90
Alignment explanation
Indices: 32631711--32631879 Score: 230
Period size: 90 Copynumber: 1.9 Consensus size: 90
32631701 ACCAAATAAG
* * * * * * * *
32631711 GTGCCAAAGCCATGTCCCTGACATGGTCTTACATGGAACCACACATCGATGCCATATCCCAAATA
1 GTGCCAAAGCCATGTCCCAGACATGGTCTTACACGGGACCACATATTGATGCCATGTCCCAGACA
32631776 TGGTCTTATACGAAGCCTCAAATCA
66 TGGTCTTATACGAAGCCTCAAATCA
* * * *
32631801 GTGCCGACGCCATGTCCCAGACATGGTCTTATACGGGACCTCATATTGATGCCATGTCCCAGACA
1 GTGCCAAAGCCATGTCCCAGACATGGTCTTACACGGGACCACATATTGATGCCATGTCCCAGACA
32631866 TGGTCTTATACGAA
66 TGGTCTTATACGAA
32631880 ATCACTTAAC
Statistics
Matches: 67, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
90 67 1.00
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (90 bp):
GTGCCAAAGCCATGTCCCAGACATGGTCTTACACGGGACCACATATTGATGCCATGTCCCAGACA
TGGTCTTATACGAAGCCTCAAATCA
Found at i:32635698 original size:48 final size:48
Alignment explanation
Indices: 32635608--32635938 Score: 599
Period size: 48 Copynumber: 6.9 Consensus size: 48
32635598 TATATATGTG
* *
32635608 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTG-AA-ATATGTATGAGATATGTATA
32635658 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
32635706 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
32635754 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
*
32635802 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
32635850 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
* *
32635898 TGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTAGGAGAT
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGAT
32635939 GTGTGTATAT
Statistics
Matches: 275, Mismatches: 6, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
48 248 0.90
49 2 0.01
50 25 0.09
ACGTcount: A:0.34, C:0.06, G:0.28, T:0.31
Consensus pattern (48 bp):
TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
Found at i:32636129 original size:37 final size:37
Alignment explanation
Indices: 32636079--32636181 Score: 161
Period size: 37 Copynumber: 2.8 Consensus size: 37
32636069 GGAAATATAT
*
32636079 TCCGGGTAAGACCCGATGATTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
32636116 TCCGGGTGAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
32636153 TTCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
32636182 GGACTATTCG
Statistics
Matches: 60, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 60 1.00
ACGTcount: A:0.22, C:0.18, G:0.33, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:32638700 original size:27 final size:27
Alignment explanation
Indices: 32638666--32638843 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
32638656 TAAATTGTAC
32638666 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
32638693 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
32638719 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
32638747 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
32638775 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
32638802 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
32638829 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
32638844 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:32638780 original size:82 final size:81
Alignment explanation
Indices: 32638667--32638822 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
32638657 AAATTGTACA
* *
32638667 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
32638731 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
32638748 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
32638813 TGCGAGTTGA
65 TGCGAATTGA
32638823 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:32638834 original size:82 final size:81
Alignment explanation
Indices: 32638663--32638843 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
32638653 GAGTAAATTG
* *
32638663 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
32638728 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
32638744 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
32638808 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
32638826 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
32638844 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:32642344 original size:27 final size:27
Alignment explanation
Indices: 32642310--32642487 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
32642300 TAAATTGTAC
32642310 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
32642337 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
32642363 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
32642391 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
32642419 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
32642446 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
32642473 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
32642488 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:32642424 original size:82 final size:81
Alignment explanation
Indices: 32642311--32642466 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
32642301 AAATTGTACA
* *
32642311 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
32642375 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
32642392 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
32642457 TGCGAGTTGA
65 TGCGAATTGA
32642467 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:32642478 original size:82 final size:81
Alignment explanation
Indices: 32642307--32642487 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
32642297 GAGTAAATTG
* *
32642307 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
32642372 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
32642388 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
32642452 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
32642470 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
32642488 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:32648455 original size:16 final size:17
Alignment explanation
Indices: 32648434--32648466 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
32648424 ATAACATTAT
32648434 TAAAA-TAATATAAAAA
1 TAAAATTAATATAAAAA
*
32648450 TAAAATTATTATAAAAA
1 TAAAATTAATATAAAAA
32648467 GATAAATTGG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (17 bp):
TAAAATTAATATAAAAA
Found at i:32648471 original size:25 final size:25
Alignment explanation
Indices: 32648421--32648472 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
32648411 ACTTTAATAC
* *
32648421 AAAATAACATTATTAAAATAATATA
1 AAAATAAAATTATTAAAATAAGATA
32648446 AAAATAAAATTATTATAAA-AAGATA
1 AAAATAAAATTATTA-AAATAAGATA
32648471 AA
1 AA
32648473 TTGGAAGCTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 21 0.88
26 3 0.12
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.29
Consensus pattern (25 bp):
AAAATAAAATTATTAAAATAAGATA
Found at i:32652311 original size:17 final size:17
Alignment explanation
Indices: 32652286--32652319 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
32652276 GAATATAATG
32652286 ATTTGATTAAATTATAT
1 ATTTGATTAAATTATAT
*
32652303 ATTTTATTAAATTATAT
1 ATTTGATTAAATTATAT
32652320 TTAAAAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (17 bp):
ATTTGATTAAATTATAT
Found at i:32652425 original size:18 final size:17
Alignment explanation
Indices: 32652404--32652441 Score: 58
Period size: 18 Copynumber: 2.2 Consensus size: 17
32652394 TATTAAAGAA
*
32652404 TTTTATTAAATTATATAT
1 TTTTACTAAATTATAT-T
32652422 TTTTACTAAATTATATT
1 TTTTACTAAATTATATT
32652439 TTT
1 TTT
32652442 AATAATAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 4 0.21
18 15 0.79
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (17 bp):
TTTTACTAAATTATATT
Found at i:32652463 original size:120 final size:118
Alignment explanation
Indices: 32652286--32652943 Score: 900
Period size: 120 Copynumber: 5.5 Consensus size: 118
32652276 GAATATAATG
* * *
32652286 ATTTGATTAAATTATATA-TTTTATTAAATTATATTTAAAAATAATTAATTTAAATTATATTTTA
1 ATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAAATTATATTTTA
32652350 TAGTATTATATATTATGATTTTAGTAAATTC-TAAGAATATTTAATATTAAAGA
66 TAGTATTATATATTATGATTTTAGTAAATTCTTAAGAATATTTAATATT-AAGA
*
32652403 ATTTTATTAAATTATATATTTTTACTAAATTATATTTTTAATAATAATTATTTTAAATTATATTT
1 ATTTTATTAAATTATATATTTTTATTAAATTATA--TTTAATAATAATTATTTTAAATTATATTT
32652468 TATAGTATTATATATTATGATTTTAGTAAATTCATTTAAGAATATTTAATATTAAGA
64 TATAGTATTATATATTATGATTTTAGTAAATTC--TTAAGAATATTTAATATTAAGA
*
32652525 ATTTTATTAAATTATATATTTTTGTTAAATTATATTTAATAATAATTATTTTAAATTATATTTTA
1 ATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAAATTATATTTTA
32652590 TAGTATTATATATTATGATTTTAGTAAATTCATTTAAGAATATTTAAATATTAAGA
66 TAGTATTATATATTATGATTTTAGTAAATTC--TTAAGAATATTT-AATATTAAGA
*
32652646 ATTTTATTAAATTATATATTTCTATTAAATTATATTTAATAATAATTATTTTAAATTATATTTTA
1 ATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAAATTATATTTTA
* *
32652711 TAGTATTATATATTATAATTTTATTAAATTCATATAAGAATATTTAATATTAAGA
66 TAGTATTATATATTATGATTTTAGTAAATTC-T-TAAGAATATTTAATATTAAGA
* *
32652766 ATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAATTATCTTTTA
1 ATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAAATTATATTTTA
* * * * ** * *
32652831 -A--ATTATTTA-T-TG-TTAATAATAATTTACCAAAACAAATTTCTGCTAATTATTAAGA
66 TAGTATTATATATTATGATT-TTAGTAAATT--CTTAA-GAATAT-T--TAA-TATTAAGA
* * *
32652886 ATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAAAAATTATGTTTAAATT
1 ATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTAT-TTTAAATT
32652944 TGATTAAATT
Statistics
Matches: 497, Mismatches: 27, Indels: 30
0.90 0.05 0.05
Matches are distributed among these distances:
114 2 0.00
115 10 0.02
116 5 0.01
117 26 0.05
118 14 0.03
119 4 0.01
120 263 0.53
121 120 0.24
122 36 0.07
123 17 0.03
ACGTcount: A:0.43, C:0.02, G:0.04, T:0.52
Consensus pattern (118 bp):
ATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAAATTATATTTTA
TAGTATTATATATTATGATTTTAGTAAATTCTTAAGAATATTTAATATTAAGA
Found at i:32652673 original size:18 final size:17
Alignment explanation
Indices: 32652646--32652800 Score: 74
Period size: 18 Copynumber: 9.0 Consensus size: 17
32652636 AATATTAAGA
32652646 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
32652663 ATTTCTATTAAA-T-TAT
1 ATTT-TATTAAATTATAT
* *
32652679 A-TTTAAT-AATAAT-T
1 ATTTTATTAAATTATAT
* *
32652693 ATTTTAAATTATATTTTAT
1 ATTTT--ATTAAATTATAT
* *
32652712 AGTATTA-TATATTATA-
1 A-TTTTATTAAATTATAT
32652728 ATTTTATTAAATTCATAT
1 ATTTTATTAAATT-ATAT
*** *
32652746 AAGAATATTTAATATTA-AGA
1 -ATTTTA-TTAA-ATTATA-T
32652766 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
32652783 ATTTTTATTAAATTATAT
1 A-TTTTATTAAATTATAT
32652801 TTAATAATAA
Statistics
Matches: 102, Mismatches: 18, Indels: 35
0.66 0.12 0.23
Matches are distributed among these distances:
13 2 0.02
14 5 0.05
15 10 0.10
16 10 0.10
17 23 0.23
18 32 0.31
19 9 0.09
20 8 0.08
21 3 0.03
ACGTcount: A:0.43, C:0.01, G:0.02, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAATTATAT
Found at i:32652717 original size:22 final size:23
Alignment explanation
Indices: 32652692--32652734 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
32652682 TAATAATAAT
*
32652692 TATTTTAAATTAT-ATTTTATAG
1 TATTATAAATTATAATTTTATAG
*
32652714 TATTATATATTATAATTTTAT
1 TATTATAAATTATAATTTTAT
32652735 TAAATTCATA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 11 0.61
23 7 0.39
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.60
Consensus pattern (23 bp):
TATTATAAATTATAATTTTATAG
Found at i:32652758 original size:241 final size:239
Alignment explanation
Indices: 32652286--32652830 Score: 925
Period size: 241 Copynumber: 2.3 Consensus size: 239
32652276 GAATATAATG
* * *
32652286 ATTTGATTAAATTATATA-TTTTATTAAATTATATTTAAAAATAATTAATTTAAATTATATTTTA
1 ATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAAATTATATTTTA
32652350 TAGTATTATATATTATGATTTTAGTAAATTCTAAGAATATTTAATATTAAAGAATTTTATTAAAT
66 TAGTATTATATATTATGATTTTAGTAAATTCTAAGAATATTTAATATTAAAGAATTTTATTAAAT
*
32652415 TATATATTTTTACTAAATTATATTTTTAATAATAATTATTTTAAATTATATTTTATAGTATTATA
131 TATATATTTCTACTAAATTATA-TTTTAATAATAATTATTTTAAATTATATTTTATAGTATTATA
* *
32652480 TATTATGATTTTAGTAAATTCATTTAAGAATATTTAATATTAAGA
195 TATTATAATTTTAGTAAATTCATATAAGAATATTTAATATTAAGA
*
32652525 ATTTTATTAAATTATATATTTTTGTTAAATTATATTTAATAATAATTATTTTAAATTATATTTTA
1 ATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAAATTATATTTTA
32652590 TAGTATTATATATTATGATTTTAGTAAATTCATTTAAGAATATTTAAATATT-AAGAATTTTATT
66 TAGTATTATATATTATGATTTTAGTAAATTC---TAAGAATATTT-AATATTAAAGAATTTTATT
*
32652654 AAATTATATATTTCTATTAAATTATA-TTTAATAATAATTATTTTAAATTATATTTTATAGTATT
127 AAATTATATATTTCTACTAAATTATATTTTAATAATAATTATTTTAAATTATATTTTATAGTATT
*
32652718 ATATATTATAATTTTATTAAATTCATATAAGAATATTTAATATTAAGA
192 ATATATTATAATTTTAGTAAATTCATATAAGAATATTTAATATTAAGA
* *
32652766 ATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAATTATCTTTTA
1 ATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAAATTATATTTTA
32652831 AATTATTTAT
Statistics
Matches: 289, Mismatches: 12, Indels: 8
0.94 0.04 0.03
Matches are distributed among these distances:
239 17 0.06
240 74 0.26
241 145 0.50
243 47 0.16
244 6 0.02
ACGTcount: A:0.42, C:0.01, G:0.04, T:0.53
Consensus pattern (239 bp):
ATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAAATTATATTTTA
TAGTATTATATATTATGATTTTAGTAAATTCTAAGAATATTTAATATTAAAGAATTTTATTAAAT
TATATATTTCTACTAAATTATATTTTAATAATAATTATTTTAAATTATATTTTATAGTATTATAT
ATTATAATTTTAGTAAATTCATATAAGAATATTTAATATTAAGA
Found at i:32652914 original size:18 final size:17
Alignment explanation
Indices: 32652886--32652920 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
32652876 ATTATTAAGA
*
32652886 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
32652903 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
32652921 TTAATAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:32652920 original size:16 final size:16
Alignment explanation
Indices: 32652886--32652940 Score: 53
Period size: 15 Copynumber: 3.4 Consensus size: 16
32652876 ATTATTAAGA
32652886 ATTTT-ATTAAATTATAT
1 ATTTTAATTAAA--ATAT
32652903 ATTTTAATTAAAATAT
1 ATTTTAATTAAAATAT
*
32652919 A-TTTAATAAAAAT-T
1 ATTTTAATTAAAATAT
32652933 ATGTTTAA
1 AT-TTTAA
32652941 ATTTGATTAA
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
14 2 0.06
15 11 0.32
16 10 0.29
17 5 0.15
18 6 0.18
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (16 bp):
ATTTTAATTAAAATAT
Found at i:32652942 original size:241 final size:238
Alignment explanation
Indices: 32652286--32652943 Score: 870
Period size: 241 Copynumber: 2.7 Consensus size: 238
32652276 GAATATAATG
* *
32652286 ATTTGATTAAATTATATA-TTTTATTAAATTATATTTAAAAATAATTAAT-TTAAATTATATTTT
1 ATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATT-ATGTTAAATTATATTTT
* * *
32652349 ATAGTATTATATATTATGATTTTAGTAAATTC-T-AAGAATATTT-AATATTAAAGAATTTTATT
65 ATAG-ATTATATATTATGATTATAATAAATTCATAAAAAATATTTAAATATT-AAGAATTTTATT
* *
32652411 AAATTATATATTTTTACTAAATTATATTTTTAATAATAATTATTTTAAATTATATTTTATAGTAT
128 AAATTATATA-TTTTATTAAA--ATATATTTAATAATAATTATTTTAAATTATATTTTATAGTAT
* *
32652476 TATATATTATGATTTTAGTAAATTCATTTAAGAATATTTAATATTAAGA
190 TATATATTATAATTTTAGTAAATTCATATAAGAATATTTAATATTAAGA
* *
32652525 ATTTTATTAAATTATATATTTTTGTTAAATTATATTTAATAATAATTATTTTAAATTATATTTTA
1 ATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAATTATATTTTA
* * * *
32652590 TAGTATTATATATTATGATTTTAGTAAATTCATTTAAGAATATTTAAATATTAAGAATTTTATTA
66 TAG-ATTATATATTATGATTATAATAAATTCA-TAAAAAATATTTAAATATTAAGAATTTTATTA
*
32652655 AATTATATATTTCTATTAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTAT
129 AATTATATATTT-TATTAAAATATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTAT
*
32652720 ATATTATAATTTTATTAAATTCATATAAGAATATTTAATATTAAGA
193 ATATTATAATTTTAGTAAATTCATATAAGAATATTTAATATTAAGA
*
32652766 ATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAATTATCTTTTA
1 ATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAATTATATTTTA
* * * *
32652831 -A-ATTATTTA-T-TG-TTAATAATAATTTACCA-AAACAAATTTCTGCTAATTATTAAGAATTT
66 TAGATTATATATTATGATT-ATAATAAATT--CATAAA-AAATAT-T--TAAATATTAAGAATTT
*
32652890 TATTAAATTATATATTTTAATTAAAATATATTTAATAAAAATTATGTTTAAATT
124 TATTAAATTATATATTTT-ATTAAAATATATTTAATAATAATTAT-TTTAAATT
32652944 TGATTAAATT
Statistics
Matches: 381, Mismatches: 22, Indels: 30
0.88 0.05 0.07
Matches are distributed among these distances:
235 2 0.01
236 11 0.03
237 5 0.01
238 10 0.03
239 20 0.05
240 129 0.34
241 156 0.41
242 4 0.01
243 38 0.10
244 6 0.02
ACGTcount: A:0.43, C:0.02, G:0.04, T:0.52
Consensus pattern (238 bp):
ATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAATTATATTTTA
TAGATTATATATTATGATTATAATAAATTCATAAAAAATATTTAAATATTAAGAATTTTATTAAA
TTATATATTTTATTAAAATATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATA
TTATAATTTTAGTAAATTCATATAAGAATATTTAATATTAAGA
Found at i:32653177 original size:16 final size:16
Alignment explanation
Indices: 32653156--32653224 Score: 120
Period size: 16 Copynumber: 4.2 Consensus size: 16
32653146 GATTTGCTAT
32653156 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
32653172 TACACCTCTAATCCAAA
1 TACACCTCTAATCC-AA
*
32653189 TACACTTCTAATCCAA
1 TACACCTCTAATCCAA
32653205 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
32653221 TACA
1 TACA
32653225 GCGAACCAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
16 35 0.70
17 15 0.30
ACGTcount: A:0.39, C:0.35, G:0.00, T:0.26
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:32653199 original size:33 final size:32
Alignment explanation
Indices: 32653156--32653224 Score: 120
Period size: 33 Copynumber: 2.1 Consensus size: 32
32653146 GATTTGCTAT
32653156 TACACCTCTAATCCAATACACCTCTAATCCAAA
1 TACACCTCTAATCCAATACACCTCTAATCC-AA
*
32653189 TACACTTCTAATCCAATACACCTCTAATCCAA
1 TACACCTCTAATCCAATACACCTCTAATCCAA
32653221 TACA
1 TACA
32653225 GCGAACCAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
32 6 0.17
33 29 0.83
ACGTcount: A:0.39, C:0.35, G:0.00, T:0.26
Consensus pattern (32 bp):
TACACCTCTAATCCAATACACCTCTAATCCAA
Found at i:32653977 original size:14 final size:14
Alignment explanation
Indices: 32653955--32653987 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
32653945 AATGTACATG
32653955 ATAAA-ATTAAAAT
1 ATAAATATTAAAAT
32653968 ATAAATATTAAAAT
1 ATAAATATTAAAAT
32653982 A-AAATA
1 ATAAATA
32653988 ATAGTTAAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 10 0.53
14 9 0.47
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (14 bp):
ATAAATATTAAAAT
Found at i:32655761 original size:17 final size:19
Alignment explanation
Indices: 32655739--32655773 Score: 56
Period size: 17 Copynumber: 1.9 Consensus size: 19
32655729 TGAATAAAAA
32655739 ATTAAA-TAAGAA-AATAC
1 ATTAAATTAAGAATAATAC
32655756 ATTAAATTAAGAATAATA
1 ATTAAATTAAGAATAATA
32655774 AATGCACTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.38
18 6 0.38
19 4 0.25
ACGTcount: A:0.63, C:0.03, G:0.06, T:0.29
Consensus pattern (19 bp):
ATTAAATTAAGAATAATAC
Found at i:32656671 original size:9 final size:9
Alignment explanation
Indices: 32656641--32656714 Score: 53
Period size: 9 Copynumber: 8.2 Consensus size: 9
32656631 TAAATTATTA
*
32656641 TTTATAAAT
1 TTTATAATT
*
32656650 TGTATAATAT
1 TTTATAAT-T
*
32656660 TTTATTATT
1 TTTATAATT
32656669 TTTAATAATT
1 TTT-ATAATT
*
32656679 TTTATAAAT
1 TTTATAATT
** *
32656688 GCTA-ATTT
1 TTTATAATT
32656696 TTTAT-ATT
1 TTTATAATT
32656704 TTTATAATT
1 TTTATAATT
32656713 TT
1 TT
32656715 AGAATGTATT
Statistics
Matches: 48, Mismatches: 13, Indels: 8
0.70 0.19 0.12
Matches are distributed among these distances:
8 11 0.23
9 22 0.46
10 15 0.31
ACGTcount: A:0.34, C:0.01, G:0.03, T:0.62
Consensus pattern (9 bp):
TTTATAATT
Found at i:32656806 original size:17 final size:16
Alignment explanation
Indices: 32656784--32656817 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
32656774 CATTGTGTAC
32656784 TTATTTTAAAAATATTT
1 TTATTTTAAAAAT-TTT
*
32656801 TTATTTTTAAAATTTT
1 TTATTTTAAAAATTTT
32656817 T
1 T
32656818 AGTTACTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (16 bp):
TTATTTTAAAAATTTT
Found at i:32657280 original size:31 final size:31
Alignment explanation
Indices: 32657245--32657303 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 31
32657235 TGAAATGTGG
* * * *
32657245 TCCAATTAGAATGTGTCATGTGGCATTTCAA
1 TCCAATTAAAAAGTGTCACGTGACATTTCAA
32657276 TCCAATTAAAAAGTGTCACGTGACATTT
1 TCCAATTAAAAAGTGTCACGTGACATTT
32657304 ACATGTATTA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Consensus pattern (31 bp):
TCCAATTAAAAAGTGTCACGTGACATTTCAA
Found at i:32657608 original size:25 final size:26
Alignment explanation
Indices: 32657580--32657640 Score: 74
Period size: 25 Copynumber: 2.4 Consensus size: 26
32657570 CTATGAGAAA
32657580 TTTTTTTAA-AT-TTAAAATTTTA-AT
1 TTTTTTTAATATGTT-AAATTTTATAT
*
32657604 TTTTTCTAATATGTTAAATTTTATAT
1 TTTTTTTAATATGTTAAATTTTATAT
32657630 TCTTTTTTAAT
1 T-TTTTTTAAT
32657641 TTTCATAATC
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
24 8 0.26
25 10 0.32
26 5 0.16
27 8 0.26
ACGTcount: A:0.31, C:0.03, G:0.02, T:0.64
Consensus pattern (26 bp):
TTTTTTTAATATGTTAAATTTTATAT
Found at i:32659485 original size:19 final size:19
Alignment explanation
Indices: 32659456--32659519 Score: 71
Period size: 18 Copynumber: 3.4 Consensus size: 19
32659446 ATGCTAATTA
32659456 TATTTTT-AATTTATAAAT
1 TATTTTTAAATTTATAAAT
32659474 TATTTTTAAATTT-T-AAT
1 TATTTTTAAATTTATAAAT
* *
32659491 TATGTTTAGAGTTTATAAAT
1 TATTTTTA-AATTTATAAAT
32659511 ATATTTTTA
1 -TATTTTTA
32659520 TTTTTAATAT
Statistics
Matches: 38, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
17 10 0.26
18 12 0.32
19 6 0.16
20 3 0.08
21 7 0.18
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.59
Consensus pattern (19 bp):
TATTTTTAAATTTATAAAT
Found at i:32659533 original size:19 final size:20
Alignment explanation
Indices: 32659450--32659533 Score: 65
Period size: 19 Copynumber: 4.5 Consensus size: 20
32659440 CTAAAAATGC
32659450 TAAT-TATATTTTTAATTTA
1 TAATATATATTTTTAATTTA
32659469 TAA-AT-TATTTTTAAATTT-
1 TAATATATATTTTT-AATTTA
* ** *
32659487 TAAT-TATGTTTAGAGTTTA
1 TAATATATATTTTTAATTTA
*
32659506 TAA-ATATATTTTT-ATTTT
1 TAATATATATTTTTAATTTA
32659524 TAATATATAT
1 TAATATATAT
32659534 ATATATAGAT
Statistics
Matches: 49, Mismatches: 9, Indels: 14
0.68 0.12 0.19
Matches are distributed among these distances:
18 21 0.43
19 28 0.57
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.60
Consensus pattern (20 bp):
TAATATATATTTTTAATTTA
Found at i:32661996 original size:3 final size:3
Alignment explanation
Indices: 32661988--32662017 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
32661978 TTGATTCCTT
32661988 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
32662018 CGTTTTCTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TTC
Found at i:32667060 original size:46 final size:46
Alignment explanation
Indices: 32667007--32667101 Score: 190
Period size: 46 Copynumber: 2.1 Consensus size: 46
32666997 AAGAAAGTTG
32667007 AAAATTTTAGTGATAATAGTACCATCATTTTCTACAACCATTTTAT
1 AAAATTTTAGTGATAATAGTACCATCATTTTCTACAACCATTTTAT
32667053 AAAATTTTAGTGATAATAGTACCATCATTTTCTACAACCATTTTAT
1 AAAATTTTAGTGATAATAGTACCATCATTTTCTACAACCATTTTAT
32667099 AAA
1 AAA
32667102 GCATACTTTG
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 49 1.00
ACGTcount: A:0.39, C:0.15, G:0.06, T:0.40
Consensus pattern (46 bp):
AAAATTTTAGTGATAATAGTACCATCATTTTCTACAACCATTTTAT
Found at i:32669955 original size:38 final size:38
Alignment explanation
Indices: 32669913--32669990 Score: 147
Period size: 38 Copynumber: 2.1 Consensus size: 38
32669903 TTTAAACAAG
*
32669913 TAATCAACTAACTCATACCTGATTGTTTTAGCTCGTTT
1 TAATCAACTAACTCATACCTGATTGTTTTAGCTCATTT
32669951 TAATCAACTAACTCATACCTGATTGTTTTAGCTCATTT
1 TAATCAACTAACTCATACCTGATTGTTTTAGCTCATTT
32669989 TA
1 TA
32669991 CACCTTCGTT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.28, C:0.21, G:0.09, T:0.42
Consensus pattern (38 bp):
TAATCAACTAACTCATACCTGATTGTTTTAGCTCATTT
Found at i:32670223 original size:45 final size:44
Alignment explanation
Indices: 32670072--32670273 Score: 179
Period size: 45 Copynumber: 4.6 Consensus size: 44
32670062 ATATCATACA
*
32670072 ATGCCAACGTCCCAGACGTGGTCTTACATGATATCTC--ATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGA-ATCACATATATCG
*
32670115 ATGCC-ACTATCCCAGACAG-GGTCTTAC-TCGAATCA-A-ATA-CG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACAT-GAATCACATATATCG
* ** * * *
32670156 ATGCCAATGTCTTAGACATGGTCTTACATGTAACCACATAGATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACATG-AATCACATATATCG
**
32670201 ATGCCAACGTCCCAGACGTGGTCTTACACAAAAAT-ACATATATCG
1 ATGCCAACGTCCCAGACGTGGTCTT--ACATGAATCACATATATCG
*
32670246 ATGCCAACGTCCCAGTCGTGGTCTTACA
1 ATGCCAACGTCCCAGACGTGGTCTTACA
32670274 CGAAAACACA
Statistics
Matches: 128, Mismatches: 18, Indels: 26
0.74 0.10 0.15
Matches are distributed among these distances:
41 22 0.17
42 15 0.12
43 27 0.21
44 3 0.02
45 56 0.44
46 2 0.02
47 3 0.02
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (44 bp):
ATGCCAACGTCCCAGACGTGGTCTTACATGAATCACATATATCG
Found at i:32672957 original size:22 final size:23
Alignment explanation
Indices: 32672879--32672982 Score: 79
Period size: 24 Copynumber: 4.4 Consensus size: 23
32672869 GAGACATGGC
*
32672879 CAGTAAGCTCATAATGAG-TAGATAA
1 CAGTAAGCTC-TATTGAGCT-GA-AA
* *
32672904 CAGTAAGCTCGATTGAGTTGGAAA
1 CAGTAAGCTCTATTGAGCT-GAAA
* *
32672928 CGGGAAGCTCTATTGAGCT-AAA
1 CAGTAAGCTCTATTGAGCTGAAA
*
32672950 CAGTAAGCTCT-TTCGAGCTGAAT
1 CAGTAAGCTCTATT-GAGCTGAAA
*
32672973 TAGTAAGCTC
1 CAGTAAGCTC
32672983 ATACAAGCTA
Statistics
Matches: 65, Mismatches: 11, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
21 2 0.03
22 17 0.26
23 11 0.17
24 22 0.34
25 13 0.20
ACGTcount: A:0.34, C:0.16, G:0.24, T:0.26
Consensus pattern (23 bp):
CAGTAAGCTCTATTGAGCTGAAA
Found at i:32676079 original size:43 final size:44
Alignment explanation
Indices: 32675979--32676089 Score: 143
Period size: 43 Copynumber: 2.5 Consensus size: 44
32675969 ATATATATTG
* * * *
32675979 TACATTGGCACTAAATGTGCGAGACTGAGATAGCTTCGGCTAAA
1 TACATTGGCACTAAATGTGTGAGACCGAGATAGATTCAGCTAAA
* *
32676023 TATATTGGAACTAAATGTGTGAGACCG-GATAGATTCAGCTAAA
1 TACATTGGCACTAAATGTGTGAGACCGAGATAGATTCAGCTAAA
* *
32676066 TACGTTGGCACTAAGTGTGTGAGA
1 TACATTGGCACTAAATGTGTGAGA
32676090 TCAGATAACT
Statistics
Matches: 57, Mismatches: 10, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
43 34 0.60
44 23 0.40
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.27
Consensus pattern (44 bp):
TACATTGGCACTAAATGTGTGAGACCGAGATAGATTCAGCTAAA
Found at i:32676159 original size:42 final size:43
Alignment explanation
Indices: 32676112--32676222 Score: 107
Period size: 48 Copynumber: 2.5 Consensus size: 43
32676102 CGCTACATGC
32676112 ATATATTGGCACTTAGTGTGCAAGACTGAGATAGCTCCGGCTATAT
1 ATATATTGGCACTTAGTGTGCAAGACTGAGATAGCTCCGGC---AT
* * * *
32676158 ATACATATTGGCACTTAATGTGCAAGATTGATATAGCTTCGGC-T
1 AT--ATATTGGCACTTAGTGTGCAAGACTGAGATAGCTCCGGCAT
* *
32676202 ATTTATTTGGCACTAAGTGTG
1 ATATA-TTGGCACTTAGTGTG
32676223 TGAGTTTCCG
Statistics
Matches: 55, Mismatches: 7, Indels: 9
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.04
43 13 0.24
44 3 0.05
46 2 0.04
48 35 0.64
ACGTcount: A:0.28, C:0.15, G:0.23, T:0.34
Consensus pattern (43 bp):
ATATATTGGCACTTAGTGTGCAAGACTGAGATAGCTCCGGCAT
Found at i:32683718 original size:21 final size:21
Alignment explanation
Indices: 32683692--32683731 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
32683682 TAATATAAAC
32683692 AATAATAATAATAGATAAATG
1 AATAATAATAATAGATAAATG
*
32683713 AATAATAATAATAGGTAAA
1 AATAATAATAATAGATAAA
32683732 CAAATTCGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.62, C:0.00, G:0.10, T:0.28
Consensus pattern (21 bp):
AATAATAATAATAGATAAATG
Found at i:32692221 original size:43 final size:43
Alignment explanation
Indices: 32692148--32692255 Score: 108
Period size: 43 Copynumber: 2.5 Consensus size: 43
32692138 TGTGAGATTA
** * *
32692148 AGATAGCTTCAGCTAAATATATTGGAACTAAATGTACGGGACC
1 AGATAGCTTTGGCTAAATACATTGGAACTAAATGTACGAGACC
** * * *
32692191 AGATAGCTTTGGCTAAATACATTGTCACTAAGTGTGCGAGATC
1 AGATAGCTTTGGCTAAATACATTGGAACTAAATGTACGAGACC
* * *
32692234 AAATAACTTTGGCTATATACAT
1 AGATAGCTTTGGCTAAATACAT
32692256 ATATTGGCAC
Statistics
Matches: 53, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
43 53 1.00
ACGTcount: A:0.35, C:0.16, G:0.19, T:0.30
Consensus pattern (43 bp):
AGATAGCTTTGGCTAAATACATTGGAACTAAATGTACGAGACC
Found at i:32692297 original size:48 final size:48
Alignment explanation
Indices: 32692244--32692335 Score: 130
Period size: 48 Copynumber: 1.9 Consensus size: 48
32692234 AAATAACTTT
* * *
32692244 GGCTATATACATATATTGGCACTTAGTGTACGTGATTGAGATAGCTCC
1 GGCTATATACACATACTGGCACTTAGTGTACGAGATTGAGATAGCTCC
* * *
32692292 GGCTATATATACATACTGGCACTTAGTGTGCGAGATTGATATAG
1 GGCTATATACACATACTGGCACTTAGTGTACGAGATTGAGATAG
32692336 ATTTGGCTAT
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
48 38 1.00
ACGTcount: A:0.28, C:0.15, G:0.24, T:0.33
Consensus pattern (48 bp):
GGCTATATACACATACTGGCACTTAGTGTACGAGATTGAGATAGCTCC
Found at i:32692344 original size:48 final size:47
Alignment explanation
Indices: 32692193--32692345 Score: 127
Period size: 48 Copynumber: 3.3 Consensus size: 47
32692183 ACGGGACCAG
* * * *
32692193 ATAGCTTTGGCTA-A-ATACAT-TGTCACTAAGTGTGCGAGA-TCAA
1 ATAGATTTGGCTATATATACATATGGCACTTAGTGTGCGAGATTGAA
* * * * *
32692236 ATA-ACTTTGGCTATATACATATATTGGCACTTAGTGTACGTGATTGAG
1 ATAGA-TTTGGCTATATATACATA-TGGCACTTAGTGTGCGAGATTGAA
* ** *
32692284 ATAGCTCCGGCTATATATACATACTGGCACTTAGTGTGCGAGATTGAT
1 ATAGATTTGGCTATATATACATA-TGGCACTTAGTGTGCGAGATTGAA
32692332 ATAGATTTGGCTAT
1 ATAGATTTGGCTAT
32692346 TTATTTGGCA
Statistics
Matches: 82, Mismatches: 21, Indels: 9
0.73 0.19 0.08
Matches are distributed among these distances:
43 11 0.13
44 1 0.01
45 4 0.05
47 15 0.18
48 51 0.62
ACGTcount: A:0.29, C:0.15, G:0.22, T:0.34
Consensus pattern (47 bp):
ATAGATTTGGCTATATATACATATGGCACTTAGTGTGCGAGATTGAA
Found at i:32701342 original size:43 final size:43
Alignment explanation
Indices: 32701293--32701402 Score: 159
Period size: 43 Copynumber: 2.6 Consensus size: 43
32701283 GATTACCGAG
* *
32701293 ATGTGATTACATGTAAGACCATGTTTGGGACATTGGCATTG-T
1 ATGTGATTACGTGTAAGACCATGTTTGGAACATTGGCATTGTT
*
32701335 ATTGTGATTATGTGTAAGACCATGTTTGGAACATTGGCATTGTT
1 A-TGTGATTACGTGTAAGACCATGTTTGGAACATTGGCATTGTT
* *
32701379 ATATGATTTCGTGTAAGACCATGT
1 ATGTGATTACGTGTAAGACCATGT
32701403 CTAGGATAGT
Statistics
Matches: 60, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
42 1 0.02
43 57 0.95
44 2 0.03
ACGTcount: A:0.26, C:0.11, G:0.25, T:0.38
Consensus pattern (43 bp):
ATGTGATTACGTGTAAGACCATGTTTGGAACATTGGCATTGTT
Found at i:32701416 original size:43 final size:42
Alignment explanation
Indices: 32701304--32701417 Score: 124
Period size: 43 Copynumber: 2.6 Consensus size: 42
32701294 TGTGATTACA
* *
32701304 TGTAAGACCATGTTTGGGACATTGGCATTGTATTGTGATTATG
1 TGTAAGACCATG-TTAGGACATTGGCATTGTATTATGATTATG
*
32701347 TGTAAGACCATGTTTGGAACATTGGCATTGT-TATATGATT-TCG
1 TGTAAGACCATGTTAGG-ACATTGGCATTGTAT-TATGATTAT-G
* *
32701390 TGTAAGACCATGTCTAGGATAGTGGCAT
1 TGTAAGACCATGT-TAGGACATTGGCAT
32701418 CGATACGTTA
Statistics
Matches: 62, Mismatches: 5, Indels: 8
0.83 0.07 0.11
Matches are distributed among these distances:
42 6 0.10
43 53 0.85
44 3 0.05
ACGTcount: A:0.25, C:0.11, G:0.26, T:0.37
Consensus pattern (42 bp):
TGTAAGACCATGTTAGGACATTGGCATTGTATTATGATTATG
Found at i:32715403 original size:42 final size:42
Alignment explanation
Indices: 32715324--32715428 Score: 106
Period size: 42 Copynumber: 2.5 Consensus size: 42
32715314 GAATTGACTT
* *
32715324 GTGATTTACGTGTAACACCATGTCTAGGATATCGGCATCGTATA
1 GTGATTT-CGTGTAAGACCATGTCTAGGACATCGGCATCG-ATA
* *
32715368 -TGATTTCGTGTAAGACCCTGTCTGGGACAGT-GGCATCGATA
1 GTGATTTCGTGTAAGACCATGTCTAGGACA-TCGGCATCGATA
* *
32715409 GTTGATTACATGTAAGACCA
1 G-TGATTTCGTGTAAGACCA
32715429 CGTTTGGGAT
Statistics
Matches: 51, Mismatches: 7, Indels: 7
0.78 0.11 0.11
Matches are distributed among these distances:
41 3 0.06
42 26 0.51
43 22 0.43
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (42 bp):
GTGATTTCGTGTAAGACCATGTCTAGGACATCGGCATCGATA
Found at i:32732742 original size:32 final size:32
Alignment explanation
Indices: 32732701--32732766 Score: 123
Period size: 32 Copynumber: 2.1 Consensus size: 32
32732691 AAGGCTATTT
*
32732701 ACCAAGCCTTTGCCACCTTGAAACAAAATCTA
1 ACCAAGCCTTTGCCACATTGAAACAAAATCTA
32732733 ACCAAGCCTTTGCCACATTGAAACAAAATCTA
1 ACCAAGCCTTTGCCACATTGAAACAAAATCTA
32732765 AC
1 AC
32732767 ATTAACCAAC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.39, C:0.30, G:0.09, T:0.21
Consensus pattern (32 bp):
ACCAAGCCTTTGCCACATTGAAACAAAATCTA
Found at i:32737111 original size:54 final size:55
Alignment explanation
Indices: 32737047--32737156 Score: 204
Period size: 54 Copynumber: 2.0 Consensus size: 55
32737037 TGTCCCAAAC
*
32737047 ATGTCTTACACTGGCTTAAATATCTCAAGGCTGATGCATGT-TCAAACATGTCTT
1 ATGTCTTACACTGGCTTAAATATCTCAAGGCTGATGCATGTCCCAAACATGTCTT
32737101 ATGTCTTACACTGGCTTAAATATCTCAAGGCTGATGCATGTCCCAAACATGTCTT
1 ATGTCTTACACTGGCTTAAATATCTCAAGGCTGATGCATGTCCCAAACATGTCTT
32737156 A
1 A
32737157 CACTGGCTCT
Statistics
Matches: 54, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
54 41 0.76
55 13 0.24
ACGTcount: A:0.28, C:0.22, G:0.16, T:0.34
Consensus pattern (55 bp):
ATGTCTTACACTGGCTTAAATATCTCAAGGCTGATGCATGTCCCAAACATGTCTT
Found at i:32746914 original size:46 final size:48
Alignment explanation
Indices: 32746851--32747020 Score: 167
Period size: 46 Copynumber: 3.6 Consensus size: 48
32746841 TGTGCCGATA
* * *
32746851 CCATGTCCCAGACATGTCTTACACTGA-CT-TATGTCTCGAGGCCGATG
1 CCATGTCCCAGACATGTCTTACACTGAGCTCT-CGTCTCAAGGCCAATG
* *
32746898 -CATGTCCCAAACATGTCTTACACT-AGCTCTCGTCTCAATGCCAATG
1 CCATGTCCCAGACATGTCTTACACTGAGCTCTCGTCTCAAGGCCAATG
* * * *
32746944 CCATGTCCCAGACATGTTCTTACACTG-GCTCTCATAAT-ATGGCCGATG
1 CCATGTCCCAGACATG-TCTTACACTGAGCTCTCGT-CTCAAGGCCAATG
*
32746992 -CATGTCCCAGACAGGTCTTACACT-AGCTC
1 CCATGTCCCAGACATGTCTTACACTGAGCTC
32747021 ACAATAACCC
Statistics
Matches: 104, Mismatches: 12, Indels: 15
0.79 0.09 0.11
Matches are distributed among these distances:
45 1 0.01
46 50 0.48
47 29 0.28
48 23 0.22
49 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.28
Consensus pattern (48 bp):
CCATGTCCCAGACATGTCTTACACTGAGCTCTCGTCTCAAGGCCAATG
Found at i:32746996 original size:47 final size:46
Alignment explanation
Indices: 32746802--32747020 Score: 164
Period size: 46 Copynumber: 4.6 Consensus size: 46
32746792 GTGTCAATGC
** * *
32746802 CATGTCCCAGACATGGTCTTACAAAAGCTCTAGCATAT-CTGTGCCGATAC
1 CATGTCCCAGACAT-GTCTTACACTAGCTCT--CATATAATG-GCCGAT-G
* *
32746852 CATGTCCCAGACATGTCTTACACT-GACT-T-ATGT-CTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAG-CTCTCATATAAT---GGCCGATG
* * * *
32746898 CATGTCCCAAACATGTCTTACACTAGCTCTCGTCTCAAT-GCCAATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTCATAT-AATGGCCGATG
*
32746944 CCATGTCCCAGACATGTTCTTACACTGGCTCTCATA-ATATGGCCGATG
1 -CATGTCCCAGACATG-TCTTACACTAGCTCTCATATA-ATGGCCGATG
*
32746992 CATGTCCCAGACAGGTCTTACACTAGCTC
1 CATGTCCCAGACATGTCTTACACTAGCTC
32747021 ACAATAACCC
Statistics
Matches: 140, Mismatches: 16, Indels: 30
0.75 0.09 0.16
Matches are distributed among these distances:
45 5 0.04
46 45 0.32
47 38 0.27
48 27 0.19
49 10 0.07
50 15 0.11
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTCATATAATGGCCGATG
Found at i:32751728 original size:18 final size:18
Alignment explanation
Indices: 32751705--32751754 Score: 64
Period size: 18 Copynumber: 2.8 Consensus size: 18
32751695 TAACAATAAA
*
32751705 CAGTGCAGCAGCAGTAAT
1 CAGTGCAGCAACAGTAAT
*
32751723 CAGTGCAGTAACAGTAAT
1 CAGTGCAGCAACAGTAAT
* *
32751741 CAATGCAGTAACAG
1 CAGTGCAGCAACAG
32751755 GATACAAGTC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.38, C:0.20, G:0.24, T:0.18
Consensus pattern (18 bp):
CAGTGCAGCAACAGTAAT
Found at i:32752178 original size:27 final size:27
Alignment explanation
Indices: 32752069--32752192 Score: 151
Period size: 27 Copynumber: 4.6 Consensus size: 27
32752059 ATATATACAT
* *
32752069 CACAT-AGGGCAAAACAGTCATATTAC
1 CACATAAGGGCAAAATAGTCATTTTAC
* *
32752095 CATACAAGGGCAAAATAGTCATTTTAC
1 CACATAAGGGCAAAATAGTCATTTTAC
** * *
32752122 CGTATAAGGGCACAACAGTCATTTTAC
1 CACATAAGGGCAAAATAGTCATTTTAC
*
32752149 CACATAAGGGAAAAATAGTCATTTTAC
1 CACATAAGGGCAAAATAGTCATTTTAC
*
32752176 CACATAAGGGAAAAATA
1 CACATAAGGGCAAAATA
32752193 ATTGTAACAC
Statistics
Matches: 84, Mismatches: 13, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
26 3 0.04
27 81 0.96
ACGTcount: A:0.43, C:0.19, G:0.16, T:0.23
Consensus pattern (27 bp):
CACATAAGGGCAAAATAGTCATTTTAC
Found at i:32754078 original size:37 final size:37
Alignment explanation
Indices: 32754019--32754164 Score: 238
Period size: 37 Copynumber: 3.9 Consensus size: 37
32754009 AGCTCAGACG
* * *
32754019 AAATCTCCACATGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
32754056 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
32754093 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGACT
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
32754130 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
32754165 ATATATTTCC
Statistics
Matches: 104, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 104 1.00
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.25
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:32754435 original size:47 final size:47
Alignment explanation
Indices: 32754373--32754807 Score: 620
Period size: 47 Copynumber: 9.1 Consensus size: 47
32754363 ACACGTTTCG
* * * *
32754373 CATTAGCCATTCGGCCTTACCACATATATTCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
* *
32754420 CATTGGCCATTCGGCCTTATCTCAGATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
32754467 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
* *
32754514 CATTGGCCATTCGACCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
* * *
32754561 CATTGGCCATTCGGCCTTATCACGCATATATATATACAGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCA--C----ACATATGCATGTTCACATTCATCA
*
32754614 CATTGGCCATTCGGCC-TATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
**
32754660 CATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCAT----GTTCACATTCATCA
*
32754711 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
* *
32754758 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
32754805 CAT
1 CAT
32754808 AAAATCCTAA
Statistics
Matches: 352, Mismatches: 25, Indels: 22
0.88 0.06 0.06
Matches are distributed among these distances:
46 36 0.10
47 229 0.65
49 1 0.00
50 1 0.00
51 44 0.12
52 5 0.01
53 36 0.10
ACGTcount: A:0.26, C:0.30, G:0.12, T:0.31
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
Found at i:32754514 original size:25 final size:25
Alignment explanation
Indices: 32754485--32754562 Score: 69
Period size: 23 Copynumber: 3.2 Consensus size: 25
32754475 ATTCGGCCTT
32754485 ATCACACATATGCATGTTCACATTC
1 ATCACACATATGCATGTTCACATTC
*
32754510 AT--CACAT-TGGCCA--TTCGACCTT-
1 ATCACACATAT-G-CATGTTC-ACATTC
*
32754532 ATCACACATACGCATGTTCACATTC
1 ATCACACATATGCATGTTCACATTC
32754557 ATCACA
1 ATCACA
32754563 TTGGCCATTC
Statistics
Matches: 41, Mismatches: 3, Indels: 18
0.66 0.05 0.29
Matches are distributed among these distances:
22 6 0.15
23 12 0.29
24 12 0.29
25 11 0.27
ACGTcount: A:0.31, C:0.31, G:0.09, T:0.29
Consensus pattern (25 bp):
ATCACACATATGCATGTTCACATTC
Found at i:32754537 original size:22 final size:22
Alignment explanation
Indices: 32754463--32754537 Score: 57
Period size: 22 Copynumber: 3.3 Consensus size: 22
32754453 GTTCACATTC
*
32754463 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGACCTT
*
32754485 ATCACACATAT-G-CATGTTC-ACATT
1 AT--CACAT-TGGCCA--TTCGACCTT
32754509 CATCACATTGGCCATTCGACCTT
1 -ATCACATTGGCCATTCGACCTT
32754532 ATCACA
1 ATCACA
32754538 CATACGCATG
Statistics
Matches: 41, Mismatches: 3, Indels: 18
0.66 0.05 0.29
Matches are distributed among these distances:
22 12 0.29
23 12 0.29
24 11 0.27
25 6 0.15
ACGTcount: A:0.27, C:0.31, G:0.12, T:0.31
Consensus pattern (22 bp):
ATCACATTGGCCATTCGACCTT
Found at i:32757118 original size:85 final size:85
Alignment explanation
Indices: 32756989--32757167 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
32756979 TATTTTATTG
*
32756989 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
32757054 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
32757074 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
32757139 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
32757159 CCCATGCTC
1 CCCATGCTC
32757168 ATGGCCGGCC
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.26, C:0.28, G:0.08, T:0.37
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Found at i:32761099 original size:25 final size:25
Alignment explanation
Indices: 32761071--32761118 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
32761061 TCGCACTCTC
*
32761071 AGTGCCTCTAATCATTTGCACACAT
1 AGTGCCCCTAATCATTTGCACACAT
* *
32761096 AGTGCCCCTATTCATTTGTACAC
1 AGTGCCCCTAATCATTTGCACAC
32761119 TTTTAAACAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.29, G:0.12, T:0.33
Consensus pattern (25 bp):
AGTGCCCCTAATCATTTGCACACAT
Found at i:32761273 original size:40 final size:40
Alignment explanation
Indices: 32761229--32761587 Score: 538
Period size: 40 Copynumber: 9.0 Consensus size: 40
32761219 GAATACACAT
* * *
32761229 CACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* **
32761269 CACCAGCACGAATGCTCTTCGGGACTTAACCTTGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * *
32761309 CTCTAGCACGAATGCTCTTCGAGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
32761349 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * *
32761389 CACCAGCACGAATGCTCTTCGGGACATAGCCCAGATATAT
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
32761429 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAT
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * *
32761469 CACTAACACGAATGCTCTTCGGGACTTAGCCCGGATATAT
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * *
32761509 CACTAGCATGAATGCTCTTCGGGACTTAGCCCGTATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
32761549 CACCAGCACGAATGCTCTTCGGGACTTAGCCCTGATATA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
32761588 TAACTCTCAA
Statistics
Matches: 289, Mismatches: 30, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 289 1.00
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (40 bp):
CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
Done.