Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 101 of 362
Found at i:32773591 original size:27 final size:27
Alignment explanation
Indices: 32773552--32773687 Score: 172
Period size: 27 Copynumber: 5.0 Consensus size: 27
32773542 GGAAGCGTCT
*
32773552 TGGTGGCTATGCCACAATTATCTGATC
1 TGGTGGCTCTGCCACAATTATCTGATC
*
32773579 TGGCGGCTCTGCCAC-ATATATCTG-TCC
1 TGGTGGCTCTGCCACAAT-TATCTGAT-C
*
32773606 TGGTGGCTATGCCACAATTATCTGATC
1 TGGTGGCTCTGCCACAATTATCTGATC
*
32773633 TGGTGGCTCTGCCAC-ATATATCTGTTC
1 TGGTGGCTCTGCCACAAT-TATCTGATC
32773660 TGGTGGCTCTGCCACAA-TATCTGTATC
1 TGGTGGCTCTGCCACAATTATCTG-ATC
32773687 T
1 T
32773688 AGTGACTTCG
Statistics
Matches: 95, Mismatches: 7, Indels: 14
0.82 0.06 0.12
Matches are distributed among these distances:
26 11 0.12
27 80 0.84
28 4 0.04
ACGTcount: A:0.18, C:0.26, G:0.22, T:0.34
Consensus pattern (27 bp):
TGGTGGCTCTGCCACAATTATCTGATC
Found at i:32773634 original size:54 final size:54
Alignment explanation
Indices: 32773552--32773687 Score: 229
Period size: 54 Copynumber: 2.5 Consensus size: 54
32773542 GGAAGCGTCT
32773552 TGGTGGCTATGCCACAATTATCTGATCTGGCGGCTCTGCCACATATATCTGTCC
1 TGGTGGCTATGCCACAATTATCTGATCTGGCGGCTCTGCCACATATATCTGTCC
* *
32773606 TGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTTC
1 TGGTGGCTATGCCACAATTATCTGATCTGGCGGCTCTGCCACATATATCTGTCC
*
32773660 TGGTGGCTCTGCCACAA-TATCTGTATCT
1 TGGTGGCTATGCCACAATTATCTG-ATCT
32773688 AGTGACTTCG
Statistics
Matches: 78, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
53 6 0.08
54 72 0.92
ACGTcount: A:0.18, C:0.26, G:0.22, T:0.34
Consensus pattern (54 bp):
TGGTGGCTATGCCACAATTATCTGATCTGGCGGCTCTGCCACATATATCTGTCC
Found at i:32773703 original size:81 final size:80
Alignment explanation
Indices: 32773552--32773709 Score: 196
Period size: 81 Copynumber: 2.0 Consensus size: 80
32773542 GGAAGCGTCT
* *
32773552 TGGTGGCTATGCCACAATTATCTGATCTGGCGGCTCTGCCACATATATCTGTCCTGGTGGCTATG
1 TGGTGGCTATGCCACAATTATCTGATCTGGCGGCTCTGCCACATATATCTGTCCTAGTGACTATG
32773617 CCACAATTATCTGATC
66 CCACAA-TATCTGATC
* * * *
32773633 TGGTGGCTCTGCCAC-ATATATCTGTTCTGGTGGCTCTGCCACA-ATATCTGTATCTAGTGACT-
1 TGGTGGCTATGCCACAAT-TATCTGATCTGGCGGCTCTGCCACATATATCTGT-CCTAGTGACTA
*
32773695 TCGTCACAATATCTG
64 T-GCCACAATATCTG
32773710 GCAGCCTCGT
Statistics
Matches: 67, Mismatches: 7, Indels: 7
0.83 0.09 0.09
Matches are distributed among these distances:
80 17 0.25
81 50 0.75
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.34
Consensus pattern (80 bp):
TGGTGGCTATGCCACAATTATCTGATCTGGCGGCTCTGCCACATATATCTGTCCTAGTGACTATG
CCACAATATCTGATC
Found at i:32776077 original size:13 final size:13
Alignment explanation
Indices: 32776059--32776087 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
32776049 GGTTGTTTAT
32776059 TAAACTAATTAAC
1 TAAACTAATTAAC
32776072 TAAACTAATTAAC
1 TAAACTAATTAAC
32776085 TAA
1 TAA
32776088 CTGAACTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (13 bp):
TAAACTAATTAAC
Found at i:32777014 original size:21 final size:21
Alignment explanation
Indices: 32776989--32777058 Score: 77
Period size: 21 Copynumber: 3.3 Consensus size: 21
32776979 AATTGCACAC
* *
32776989 GGCCGTGTGGGTTAACGGTCA
1 GGCCGTGTGGGTCAACGGCCA
* *
32777010 GGCCGTATGGGTCAATGGCCA
1 GGCCGTGTGGGTCAACGGCCA
* * *
32777031 GGCCGTGTGGATCAATGACCA
1 GGCCGTGTGGGTCAACGGCCA
32777052 GGCCGTG
1 GGCCGTG
32777059 GTCGACACCC
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 42 1.00
ACGTcount: A:0.17, C:0.23, G:0.40, T:0.20
Consensus pattern (21 bp):
GGCCGTGTGGGTCAACGGCCA
Found at i:32784635 original size:11 final size:11
Alignment explanation
Indices: 32784618--32784666 Score: 53
Period size: 11 Copynumber: 4.3 Consensus size: 11
32784608 AGATAAATAT
32784618 TATTTTATTAA
1 TATTTTATTAA
* *
32784629 TACTTTAATAAGA
1 TA-TTTTATTA-A
*
32784642 TATTTTATTAT
1 TATTTTATTAA
32784653 TATTTTATTAA
1 TATTTTATTAA
32784664 TAT
1 TAT
32784667 ATAAAGAAAG
Statistics
Matches: 30, Mismatches: 6, Indels: 4
0.75 0.15 0.10
Matches are distributed among these distances:
11 15 0.50
12 12 0.40
13 3 0.10
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.59
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:32784663 original size:27 final size:27
Alignment explanation
Indices: 32784586--32784665 Score: 76
Period size: 27 Copynumber: 3.0 Consensus size: 27
32784576 GAGATATTTT
* *
32784586 GATATTTTATAATTATTTAATTAGATAA
1 GATATTTTATTATTATTTTATTA-ATAA
**
32784614 -ATATTATT-TTATTAATACT-TTAATAA
1 GATATT-TTATTATT-ATTTTATTAATAA
32784640 GATATTTTATTATTATTTTATTAATA
1 GATATTTTATTATTATTTTATTAATA
32784666 TATAAAGAAA
Statistics
Matches: 41, Mismatches: 6, Indels: 11
0.71 0.10 0.19
Matches are distributed among these distances:
26 9 0.22
27 28 0.68
28 4 0.10
ACGTcount: A:0.40, C:0.01, G:0.04, T:0.55
Consensus pattern (27 bp):
GATATTTTATTATTATTTTATTAATAA
Found at i:32784668 original size:24 final size:24
Alignment explanation
Indices: 32784613--32784668 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
32784603 TAATTAGATA
32784613 AATATTATTTTATTAATACTTTAAT
1 AATA-TATTTTATTAATACTTTAAT
* * * *
32784638 AAGATATTTTATTATTATTTTATT
1 AATATATTTTATTAATACTTTAAT
32784662 AATATAT
1 AATATAT
32784669 AAAGAAAGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
24 23 0.88
25 3 0.12
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (24 bp):
AATATATTTTATTAATACTTTAAT
Found at i:32786838 original size:38 final size:39
Alignment explanation
Indices: 32786788--32787129 Score: 283
Period size: 46 Copynumber: 7.9 Consensus size: 39
32786778 CTGATATGAA
*
32786788 ATGTGTAAGACCATAGTTGAAAGATACCATGGCAACCTG
1 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
32786827 -TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
1 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
32786865 ATATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAACCTG
1 --ATG---TG--TAAGACCATGGTTGAAAGATACCATGGCAACCTG
32786911 -TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATG
1 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC-----TG
*
32786954 AAATGTGTAAGACCATGGTTGGAAGATACCATGGCAACCTGATATGAG
1 --ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC-----T--G
* *
32787002 ATGTGTAAGACTATGGTTGAAAGATACCATGGCAACGTG
1 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
* *
32787041 ACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACGTG
1 --ATG---TG--TAAGACCATGGTTGAAAGATACCATGGCAACCTG
* *
32787087 ACATGAAAAGAATAAGACCATGGTTGAAAGATACTATGGCAAC
1 --ATG---TG--TAAGACCATGGTTGAAAGATACCATGGCAAC
32787130 ATGACAGAAA
Statistics
Matches: 270, Mismatches: 8, Indels: 43
0.84 0.02 0.13
Matches are distributed among these distances:
38 69 0.26
39 1 0.00
40 2 0.01
41 6 0.02
43 4 0.01
44 3 0.01
46 184 0.68
48 1 0.00
ACGTcount: A:0.37, C:0.15, G:0.25, T:0.23
Consensus pattern (39 bp):
ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
Found at i:32786898 original size:46 final size:46
Alignment explanation
Indices: 32786831--32787163 Score: 425
Period size: 46 Copynumber: 7.4 Consensus size: 46
32786821 AACCTGTGTG
*
32786831 TAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTA
1 TAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAATGTA
32786877 TAAGACCATGGTTGAAAGATACCATGGCAACCTG---TG---TG--
1 TAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAATGTA
* *
32786915 TAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTG
1 TAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAATGTA
* * * *
32786961 TAAGACCATGGTTGGAAGATACCATGGCAACCTGATATGAGATGTG
1 TAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAATGTA
* * * *
32787007 TAAGACTATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAATGTA
* * *
32787053 TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAATGTA
* *
32787099 TAAGACCATGGTTGAAAGATACTATGGCAACATGACA-GAAAATG-A
1 TAAGACCATGGTTGAAAGATACCATGGCAACCTGACATG-AAATGTA
*
32787144 GTAAGACCATAGTTGAAAGA
1 -TAAGACCATGGTTGAAAGA
32787164 CACTAAGGCA
Statistics
Matches: 262, Mismatches: 15, Indels: 20
0.88 0.05 0.07
Matches are distributed among these distances:
38 34 0.13
40 2 0.01
41 2 0.01
43 2 0.01
44 2 0.01
45 2 0.01
46 218 0.83
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.22
Consensus pattern (46 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAATGTA
Found at i:32786913 original size:84 final size:85
Alignment explanation
Indices: 32786778--32787163 Score: 465
Period size: 92 Copynumber: 4.4 Consensus size: 85
32786768 AGTGTGCTCT
* *
32786778 CTGATATGAAATGTGTAAGACCATAGTTGAAAGATACCATGGCAACCTG-TGTGTAAGACCATGG
1 CTGATATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAACCTGATGTGTAAGACCATGG
32786842 TTGAAAGATACCATGGCAAC
66 TTGAAAGATACCATGGCAAC
32786862 CTGATATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAACCTG-TGTGTAAGACCATGG
1 CTGATATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAACCTGATGTGTAAGACCATGG
32786926 TTGAAAGATACCATGGCAAC
66 TTGAAAGATACCATGGCAAC
* *
32786946 CTGATATGAAATGTGTAAGACCATGGTTGGAAGATACCATGGCAACCTGATATGAGATGTGTAAG
1 CTGATATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAACC-----T--GATGTGTAAG
*
32787011 ACTATGGTTGAAAGATACCATGGCAAC
59 ACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
32787038 GTGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAATAAG
1 CTGATATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAACCTG--ATG---TG--TAAG
*
32787103 ACCATGGTTGAAAGATACTATGGCAAC
59 ACCATGGTTGAAAGATACCATGGCAAC
* * *
32787130 ATGACA-GAAAATG-AGTAAGACCATAGTTGAAAGA
1 CTGATATG-AAATGTA-TAAGACCATGGTTGAAAGA
32787164 CACTAAGGCA
Statistics
Matches: 267, Mismatches: 18, Indels: 26
0.86 0.06 0.08
Matches are distributed among these distances:
84 127 0.48
85 1 0.00
87 4 0.01
89 1 0.00
90 1 0.00
91 3 0.01
92 130 0.49
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.22
Consensus pattern (85 bp):
CTGATATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAACCTGATGTGTAAGACCATGG
TTGAAAGATACCATGGCAAC
Found at i:32787148 original size:138 final size:130
Alignment explanation
Indices: 32786792--32787163 Score: 431
Period size: 138 Copynumber: 2.9 Consensus size: 130
32786782 TATGAAATGT
* *
32786792 GTAAGACCATAGTTGAAAGATACCATGGCAACCTG---TG---TG--TAAGACCATGGTTGAAAG
1 GTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAAAGAATAAGACCATGGTTGAAAG
32786849 ATACCATGGCAACCTGATATGAAATGTA-TAAGACCATGGTTGAAAGATACCATGGCAACCTGTG
66 ATACCATGGCAACCTGATATGAAATG-AGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTG
*
32786913 T
130 A
* * ** *
32786914 GTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGGAAG
1 GTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAAAGAATAAGACCATGGTTGAAAG
* * * *
32786979 ATACCATGGCAACCTGATATGAGATGTGTAAGACTATGGTTGAAAGATACCATGGCAACGTGACA
66 ATACCATGGCAACCTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACCTG---
32787044 TGAAAA
128 TG---A
*
32787050 GAATAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAATAAGACCATGGTTGAA
1 G--TAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAAAGAATAAGACCATGGTTGAA
* * * *
32787115 AGATACTATGGCAACATGACA-GAAAATGAGTAAGACCATAGTTGAAAGA
64 AGATACCATGGCAACCTGATATG-AAATGAGTAAGACCATGGTTGAAAGA
32787164 CACTAAGGCA
Statistics
Matches: 212, Mismatches: 20, Indels: 20
0.84 0.08 0.08
Matches are distributed among these distances:
122 34 0.16
125 2 0.01
128 2 0.01
130 74 0.35
133 2 0.01
136 1 0.00
137 1 0.00
138 96 0.45
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.22
Consensus pattern (130 bp):
GTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAAAGAATAAGACCATGGTTGAAAG
ATACCATGGCAACCTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGA
Found at i:32788115 original size:71 final size:71
Alignment explanation
Indices: 32787998--32788139 Score: 257
Period size: 71 Copynumber: 2.0 Consensus size: 71
32787988 TAGAATCAGT
** *
32787998 TTATAAGTATATGAACAGTCTTCTATGTCTAGAAATCGTTTGCATTTTAATTAAGAAATATGAAC
1 TTATAAGTATACAAACAGTCTTCTATGTCTAGAAATCGTTTACATTTTAATTAAGAAATATGAAC
32788063 AATCAA
66 AATCAA
32788069 TTATAAGTATACAAACAGTCTTCTATGTCTAGAAATCGTTTACATTTTAATTAAGAAATATGAAC
1 TTATAAGTATACAAACAGTCTTCTATGTCTAGAAATCGTTTACATTTTAATTAAGAAATATGAAC
32788134 AATCAA
66 AATCAA
32788140 ATGAAATAGT
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
71 68 1.00
ACGTcount: A:0.41, C:0.12, G:0.11, T:0.36
Consensus pattern (71 bp):
TTATAAGTATACAAACAGTCTTCTATGTCTAGAAATCGTTTACATTTTAATTAAGAAATATGAAC
AATCAA
Found at i:32790168 original size:22 final size:21
Alignment explanation
Indices: 32790126--32790174 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 21
32790116 AAAATGATTG
* *
32790126 TAACAAATATAAGTTTCATAA
1 TAACAAATATAAATATCATAA
32790147 TTAACAAATATATAATAT-ATAA
1 -TAACAAATATA-AATATCATAA
32790169 TAACAA
1 TAACAA
32790175 TTTAAAATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 6 0.25
22 15 0.62
23 3 0.12
ACGTcount: A:0.57, C:0.08, G:0.02, T:0.33
Consensus pattern (21 bp):
TAACAAATATAAATATCATAA
Found at i:32793304 original size:23 final size:23
Alignment explanation
Indices: 32793278--32793322 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
32793268 TATACTAAAT
32793278 ATATATATATTTTATTTTTAATC
1 ATATATATATTTTATTTTTAATC
*
32793301 ATATTTATATTTTATTTTTAAT
1 ATATATATATTTTATTTTTAAT
32793323 TTTAATATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.64
Consensus pattern (23 bp):
ATATATATATTTTATTTTTAATC
Found at i:32795038 original size:18 final size:17
Alignment explanation
Indices: 32795017--32795060 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
32795007 TTCAAAAAAA
* *
32795017 TTTTAATTTTTGATACTT
1 TTTTAATATTT-ATAATT
*
32795035 TTTTAAGATTTATAATT
1 TTTTAATATTTATAATT
32795052 TTTTAATAT
1 TTTTAATAT
32795061 AAATTTAGTA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
17 13 0.59
18 9 0.41
ACGTcount: A:0.30, C:0.02, G:0.05, T:0.64
Consensus pattern (17 bp):
TTTTAATATTTATAATT
Found at i:32795250 original size:23 final size:23
Alignment explanation
Indices: 32795224--32795269 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
32795214 TACTAGTTTG
32795224 GGGTGGTGAGGGATGGCCAAAGA
1 GGGTGGTGAGGGATGGCCAAAGA
*
32795247 GGGTGGTGAGGGATGGCTAAAGA
1 GGGTGGTGAGGGATGGCCAAAGA
32795270 TCAATGAATG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.26, C:0.07, G:0.52, T:0.15
Consensus pattern (23 bp):
GGGTGGTGAGGGATGGCCAAAGA
Found at i:32801457 original size:93 final size:93
Alignment explanation
Indices: 32801345--32801515 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
32801335 GCCCATAAGT
* *
32801345 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
32801410 TGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
32801438 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
32801503 CGAGTTCGGATGC
66 CGAGTTCGGATGC
32801516 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:32801512 original size:46 final size:46
Alignment explanation
Indices: 32801337--32801512 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
32801327 TGTAACCCGC
* * *
32801337 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
32801383 CCATAAGTGAACTCGGACTCAACTCAATGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* * *
32801433 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
32801476 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
32801513 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 63 0.58
47 28 0.26
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:32808461 original size:46 final size:46
Alignment explanation
Indices: 32808394--32808568 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
32808384 TGTAACCCGC
* *
32808394 CCATAAGTGAACTCGAACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
32808440 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * * * * *
32808490 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
32808533 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
32808569 ATGCTCAACC
Statistics
Matches: 106, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 1 0.01
45 2 0.02
46 61 0.58
47 27 0.25
48 3 0.03
49 1 0.01
50 3 0.03
51 3 0.03
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:32808510 original size:93 final size:93
Alignment explanation
Indices: 32808402--32808572 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
32808392 GCCCATAAGT
* * *
32808402 GAACTCGAACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGAACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
32808467 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* *
32808495 GAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGAACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
32808560 CGAGTTCGGATGC
66 CGAGTTCGGATGC
32808573 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGAACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:32813596 original size:56 final size:56
Alignment explanation
Indices: 32813539--32813806 Score: 362
Period size: 56 Copynumber: 4.8 Consensus size: 56
32813529 CATACAGGGT
* * * * *
32813539 CTTACTCGTACACATATATCAAAATCACATATAGATGCCAACATATTAAACGTGGT
1 CTTACTCGCACACATATATCAGAGTCACATATAGATGCCAACATATGAAACGTGGA
* * *
32813595 CTTACTCGCACACATATATCAGAGTCACATATCGATGCCAACGTATGAAGCGTGGA
1 CTTACTCGCACACATATATCAGAGTCACATATAGATGCCAACATATGAAACGTGGA
* * * *
32813651 CTTACTCGTACACATATATCAGAATCACATATCA-ATGCCAACGTATTAAACGTGGA
1 CTTACTCGCACACATATATCAGAGTCACATAT-AGATGCCAACATATGAAACGTGGA
* * *
32813707 CTTACTC-CACACTTATATCAGAGTCACATATTGATGCCAACATATGAAACATGGA
1 CTTACTCGCACACATATATCAGAGTCACATATAGATGCCAACATATGAAACGTGGA
*
32813762 CTTACTCGCACACATATATCAGAGTCACATATCGATGCC-ACATAT
1 CTTACTCGCACACATATATCAGAGTCACATATAGATGCCAACATAT
32813807 ACTTCTAGGT
Statistics
Matches: 187, Mismatches: 22, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
55 53 0.28
56 134 0.72
ACGTcount: A:0.36, C:0.24, G:0.13, T:0.26
Consensus pattern (56 bp):
CTTACTCGCACACATATATCAGAGTCACATATAGATGCCAACATATGAAACGTGGA
Found at i:32813778 original size:111 final size:112
Alignment explanation
Indices: 32813539--32813806 Score: 407
Period size: 111 Copynumber: 2.4 Consensus size: 112
32813529 CATACAGGGT
* *
32813539 CTTACTCGTACACATATATCAAAATCACATAT-AGATGCCAACATATTAAACGTGGTCTTACTCG
1 CTTACTCGTACACATATATCAGAATCACATATCA-ATGCCAACATATTAAACGTGGACTTACTCG
* * *
32813603 CACACATATATCAGAGTCACATATCGATGCCAACGTATGAAGCGTGGA
65 CACACATATATCAGAGTCACATATCGATGCCAACATATGAAACATGGA
*
32813651 CTTACTCGTACACATATATCAGAATCACATATCAATGCCAACGTATTAAACGTGGACTTACTC-C
1 CTTACTCGTACACATATATCAGAATCACATATCAATGCCAACATATTAAACGTGGACTTACTCGC
* *
32813715 ACACTTATATCAGAGTCACATATTGATGCCAACATATGAAACATGGA
66 ACACATATATCAGAGTCACATATCGATGCCAACATATGAAACATGGA
* * *
32813762 CTTACTCGCACACATATATCAGAGTCACATATCGATGCC-ACATAT
1 CTTACTCGTACACATATATCAGAATCACATATCAATGCCAACATAT
32813807 ACTTCTAGGT
Statistics
Matches: 143, Mismatches: 12, Indels: 4
0.90 0.08 0.03
Matches are distributed among these distances:
110 5 0.03
111 79 0.55
112 58 0.41
113 1 0.01
ACGTcount: A:0.36, C:0.24, G:0.13, T:0.26
Consensus pattern (112 bp):
CTTACTCGTACACATATATCAGAATCACATATCAATGCCAACATATTAAACGTGGACTTACTCGC
ACACATATATCAGAGTCACATATCGATGCCAACATATGAAACATGGA
Found at i:32819783 original size:56 final size:55
Alignment explanation
Indices: 32819742--32820008 Score: 327
Period size: 56 Copynumber: 4.8 Consensus size: 55
32819732 CCTCATATAG
* *
32819742 GGTCTTACTCGTACACATATACCGGAATCACATATCGATGCCAAAGTATTAAACGT
1 GGTCTTACTCGTACACATATATCGGAATCACATATCGATGCCAACGTA-TAAACGT
* * * *
32819798 GGTCTTACTCGCATACATATATCAGAGTCACATATCGATGCCAACGTATGAAACGT
1 GGTCTTACTCGTACACATATATCGGAATCACATATCGATGCCAACGTAT-AAACGT
* *
32819854 GGACTTACTCGTACACATATATCGGTATCACATATCGATGCCAACGTATTAAACGT
1 GGTCTTACTCGTACACATATATCGGAATCACATATCGATGCCAACGTA-TAAACGT
* * * * * * *
32819910 GGACTTACTAGCACACTTATATCAGAGTCACATATCGATGCCAACATATGAAACGT
1 GGTCTTACTCGTACACATATATCGGAATCACATATCGATGCCAACGTAT-AAACGT
* * * *
32819966 GGACTTACTCGCACACATATATCAGAGTCACATATCGATGCCA
1 GGTCTTACTCGTACACATATATCGGAATCACATATCGATGCCA
32820009 CATATACTTC
Statistics
Matches: 187, Mismatches: 21, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
55 2 0.01
56 184 0.98
57 1 0.01
ACGTcount: A:0.33, C:0.24, G:0.16, T:0.26
Consensus pattern (55 bp):
GGTCTTACTCGTACACATATATCGGAATCACATATCGATGCCAACGTATAAACGT
Found at i:32819910 original size:112 final size:111
Alignment explanation
Indices: 32819745--32820008 Score: 420
Period size: 112 Copynumber: 2.4 Consensus size: 111
32819735 CATATAGGGT
* * *
32819745 CTTACTCGTACACATATACCGGAATCACATATCGATGCCAAAGTATTAAACGTGGTCTTACTCGC
1 CTTACTCGTACACATATATCGG-ATCACATATCGATGCCAAAGTATTAAACGTGGACTTACTAGC
* *
32819810 ATACATATATCAGAGTCACATATCGATGCCAACGTATGAAACGTGGA
65 ACACATATATCAGAGTCACATATCGATGCCAACATATGAAACGTGGA
*
32819857 CTTACTCGTACACATATATCGGTATCACATATCGATGCCAACGTATTAAACGTGGACTTACTAGC
1 CTTACTCGTACACATATATCGG-ATCACATATCGATGCCAAAGTATTAAACGTGGACTTACTAGC
*
32819922 ACACTTATATCAGAGTCACATATCGATGCCAACATATGAAACGTGGA
65 ACACATATATCAGAGTCACATATCGATGCCAACATATGAAACGTGGA
* *
32819969 CTTACTCGCACACATATATCAGAGTCACATATCGATGCCA
1 CTTACTCGTACACATATATCGGA-TCACATATCGATGCCA
32820009 CATATACTTC
Statistics
Matches: 141, Mismatches: 10, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
111 1 0.01
112 140 0.99
ACGTcount: A:0.34, C:0.24, G:0.16, T:0.26
Consensus pattern (111 bp):
CTTACTCGTACACATATATCGGATCACATATCGATGCCAAAGTATTAAACGTGGACTTACTAGCA
CACATATATCAGAGTCACATATCGATGCCAACATATGAAACGTGGA
Found at i:32821322 original size:15 final size:17
Alignment explanation
Indices: 32821302--32821333 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
32821292 TTAAATCATG
32821302 AAAATTT-CA-AAAATA
1 AAAATTTACACAAAATA
32821317 AAAATTTACACAAAATA
1 AAAATTTACACAAAATA
32821334 GACACAGAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 2 0.13
17 6 0.40
ACGTcount: A:0.66, C:0.09, G:0.00, T:0.25
Consensus pattern (17 bp):
AAAATTTACACAAAATA
Found at i:32823459 original size:59 final size:59
Alignment explanation
Indices: 32823367--32823486 Score: 204
Period size: 59 Copynumber: 2.0 Consensus size: 59
32823357 TTGATACATA
32823367 ATACATGCTAGGGTCCAGGTGCTTTTGAGTAGCCCCGTTGAGAGGCATGTGAATATGTG
1 ATACATGCTAGGGTCCAGGTGCTTTTGAGTAGCCCCGTTGAGAGGCATGTGAATATGTG
* * * *
32823426 ATACATGCTAGGGTCCGGGTGCTTTTGAGTAGCCCTGTTGAGAGGCATGTGATTCTGTG
1 ATACATGCTAGGGTCCAGGTGCTTTTGAGTAGCCCCGTTGAGAGGCATGTGAATATGTG
32823485 AT
1 AT
32823487 CTGTGGCACT
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
59 57 1.00
ACGTcount: A:0.20, C:0.17, G:0.33, T:0.31
Consensus pattern (59 bp):
ATACATGCTAGGGTCCAGGTGCTTTTGAGTAGCCCCGTTGAGAGGCATGTGAATATGTG
Found at i:32823691 original size:24 final size:24
Alignment explanation
Indices: 32823661--32823712 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
32823651 TTGTGGAAGG
* *
32823661 TATGTATGTATGTGCTT-TTGTGTA
1 TATGTATGGATGTG-TTCATGTGTA
32823685 TATGTATGGATGTGTTCATGTGTA
1 TATGTATGGATGTGTTCATGTGTA
32823709 TATG
1 TATG
32823713 GGTATGAAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 2 0.08
24 23 0.92
ACGTcount: A:0.19, C:0.04, G:0.27, T:0.50
Consensus pattern (24 bp):
TATGTATGGATGTGTTCATGTGTA
Found at i:32828124 original size:40 final size:40
Alignment explanation
Indices: 32828011--32828148 Score: 168
Period size: 40 Copynumber: 3.5 Consensus size: 40
32828001 CTCGAGAATA
* * *
32828011 TAAAGTGGATAGGATTCGTTCCTGATTCACTATAATACCT
1 TAAAGTGGATAGGATTTGTTCCTGATTCACTATGATAACT
* * *
32828051 CAAAGTGGATAGGATTTGTTCCTGATTCACTATGGTAATT
1 TAAAGTGGATAGGATTTGTTCCTGATTCACTATGATAACT
* * *
32828091 TAAAGTGAATAGGATTTATTCCTGATTCACTATGTTAACT
1 TAAAGTGGATAGGATTTGTTCCTGATTCACTATGATAACT
* **
32828131 TAAGGCAGATAGGATTTG
1 TAAAGTGGATAGGATTTG
32828149 ACCTGAAAAG
Statistics
Matches: 82, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 82 1.00
ACGTcount: A:0.30, C:0.13, G:0.20, T:0.36
Consensus pattern (40 bp):
TAAAGTGGATAGGATTTGTTCCTGATTCACTATGATAACT
Found at i:32828213 original size:78 final size:78
Alignment explanation
Indices: 32828113--32828264 Score: 243
Period size: 78 Copynumber: 1.9 Consensus size: 78
32828103 GATTTATTCC
* *
32828113 TGATTCACTATGTTAACTTAAGGCAGATAGGATTTGACCTGAAAAGGTAATCCTGATTCGCTACA
1 TGATTCACTATGGTAACTTAAGGCAGATAGGATTTGACCTGAAAAGGTAATCCTGATTCACTACA
32828178 GTTACATGATATA
66 GTTACATGATATA
* **
32828191 TGATTCATTATGGTAA-TCTAAGGTGGATAGGATTTGACCTGAAAAGGTAATCCTGATTCACTAC
1 TGATTCACTATGGTAACT-TAAGGCAGATAGGATTTGACCTGAAAAGGTAATCCTGATTCACTAC
32828255 AGTTACATGA
65 AGTTACATGA
32828265 GATGTGACTC
Statistics
Matches: 68, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
77 1 0.01
78 67 0.99
ACGTcount: A:0.33, C:0.14, G:0.20, T:0.32
Consensus pattern (78 bp):
TGATTCACTATGGTAACTTAAGGCAGATAGGATTTGACCTGAAAAGGTAATCCTGATTCACTACA
GTTACATGATATA
Found at i:32830894 original size:6 final size:6
Alignment explanation
Indices: 32830876--32830988 Score: 65
Period size: 6 Copynumber: 18.3 Consensus size: 6
32830866 AAGAAACATT
* *
32830876 ATCAGA A-CTAGA ATCAGA ATCAGA ATTAG- GTGACA-A ATCAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA ATCAGA
* * *
32830924 ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA ATCAGT ATCAGGTA A-CAGA
1 ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA
*
32830974 ATCAAAA ATCAGA AT
1 ATC-AGA ATCAGA AT
32830989 GTGAATGCAA
Statistics
Matches: 82, Mismatches: 12, Indels: 26
0.68 0.10 0.22
Matches are distributed among these distances:
5 8 0.10
6 58 0.71
7 14 0.17
8 2 0.02
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:32830944 original size:19 final size:19
Alignment explanation
Indices: 32830920--32830977 Score: 58
Period size: 19 Copynumber: 3.4 Consensus size: 19
32830910 AAATCAGAAT
32830920 CAGAATCAGTATCAGGTAA
1 CAGAATCAGTATCAGGTAA
*
32830939 CAGAATCA--A--A---AT
1 CAGAATCAGTATCAGGTAA
32830951 CAGAATCAGTATCAGGTAA
1 CAGAATCAGTATCAGGTAA
32830970 CAGAATCA
1 CAGAATCA
32830978 AAAATCAGAA
Statistics
Matches: 30, Mismatches: 2, Indels: 14
0.65 0.04 0.30
Matches are distributed among these distances:
12 9 0.30
14 1 0.03
15 1 0.03
16 1 0.03
17 1 0.03
19 17 0.57
ACGTcount: A:0.47, C:0.17, G:0.17, T:0.19
Consensus pattern (19 bp):
CAGAATCAGTATCAGGTAA
Found at i:32830952 original size:31 final size:31
Alignment explanation
Indices: 32830887--32830988 Score: 152
Period size: 31 Copynumber: 3.3 Consensus size: 31
32830877 TCAGAACTAG
* * * *
32830887 AATCAGAATCAGAATTAGGTGACA-AATCAG
1 AATCAGAATCAGTATCAGGTAACAGAATCAA
32830917 AATCAGAATCAGTATCAGGTAACAGAATCAA
1 AATCAGAATCAGTATCAGGTAACAGAATCAA
32830948 AATCAGAATCAGTATCAGGTAACAGAATCAAA
1 AATCAGAATCAGTATCAGGTAACAGAATC-AA
32830980 AATCAGAAT
1 AATCAGAAT
32830989 GTGAATGCAA
Statistics
Matches: 66, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
30 21 0.32
31 34 0.52
32 11 0.17
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.20
Consensus pattern (31 bp):
AATCAGAATCAGTATCAGGTAACAGAATCAA
Found at i:32831387 original size:22 final size:22
Alignment explanation
Indices: 32831359--32831423 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
32831349 GCAAATACGT
*
32831359 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
32831381 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
*
32831403 TTGACACAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
32831424 AAGGCTTTAA
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 2 0.06
22 32 0.89
23 2 0.06
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:32831899 original size:27 final size:27
Alignment explanation
Indices: 32831869--32831932 Score: 74
Period size: 27 Copynumber: 2.4 Consensus size: 27
32831859 TATCCCATAA
*
32831869 GGTATCTCGGTAATTCCACCCTACAGG
1 GGTATCTCAGTAATTCCACCCTACAGG
* * * *
32831896 GGTATTTTAGTAATTCTACCCTACATG
1 GGTATCTCAGTAATTCCACCCTACAGG
*
32831923 GGTATTTCAG
1 GGTATCTCAG
32831933 GAACTTGAAG
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.23, C:0.22, G:0.20, T:0.34
Consensus pattern (27 bp):
GGTATCTCAGTAATTCCACCCTACAGG
Found at i:32832913 original size:6 final size:6
Alignment explanation
Indices: 32832895--32833007 Score: 65
Period size: 6 Copynumber: 18.3 Consensus size: 6
32832885 AAGAAACATT
* *
32832895 ATCAGA A-CTAGA ATCAGA ATCAGA ATTAG- GTGACA-A ATCAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA ATCAGA
* * *
32832943 ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA ATCAGT ATCAGGTA A-CAGA
1 ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA
*
32832993 ATCAAAA ATCAGA AT
1 ATC-AGA ATCAGA AT
32833008 GTGAATGCAA
Statistics
Matches: 82, Mismatches: 12, Indels: 26
0.68 0.10 0.22
Matches are distributed among these distances:
5 8 0.10
6 58 0.71
7 14 0.17
8 2 0.02
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:32832963 original size:19 final size:19
Alignment explanation
Indices: 32832939--32832996 Score: 58
Period size: 19 Copynumber: 3.4 Consensus size: 19
32832929 AAATCAGAAT
32832939 CAGAATCAGTATCAGGTAA
1 CAGAATCAGTATCAGGTAA
*
32832958 CAGAATCA--A--A---AT
1 CAGAATCAGTATCAGGTAA
32832970 CAGAATCAGTATCAGGTAA
1 CAGAATCAGTATCAGGTAA
32832989 CAGAATCA
1 CAGAATCA
32832997 AAAATCAGAA
Statistics
Matches: 30, Mismatches: 2, Indels: 14
0.65 0.04 0.30
Matches are distributed among these distances:
12 9 0.30
14 1 0.03
15 1 0.03
16 1 0.03
17 1 0.03
19 17 0.57
ACGTcount: A:0.47, C:0.17, G:0.17, T:0.19
Consensus pattern (19 bp):
CAGAATCAGTATCAGGTAA
Found at i:32832971 original size:31 final size:31
Alignment explanation
Indices: 32832906--32833007 Score: 152
Period size: 31 Copynumber: 3.3 Consensus size: 31
32832896 TCAGAACTAG
* * * *
32832906 AATCAGAATCAGAATTAGGTGACA-AATCAG
1 AATCAGAATCAGTATCAGGTAACAGAATCAA
32832936 AATCAGAATCAGTATCAGGTAACAGAATCAA
1 AATCAGAATCAGTATCAGGTAACAGAATCAA
32832967 AATCAGAATCAGTATCAGGTAACAGAATCAAA
1 AATCAGAATCAGTATCAGGTAACAGAATC-AA
32832999 AATCAGAAT
1 AATCAGAAT
32833008 GTGAATGCAA
Statistics
Matches: 66, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
30 21 0.32
31 34 0.52
32 11 0.17
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.20
Consensus pattern (31 bp):
AATCAGAATCAGTATCAGGTAACAGAATCAA
Found at i:32833406 original size:22 final size:22
Alignment explanation
Indices: 32833378--32833442 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
32833368 GCAAATACGT
*
32833378 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
32833400 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
*
32833422 TTGACACAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
32833443 AAGGCTTTAA
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 2 0.06
22 32 0.89
23 2 0.06
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:32833918 original size:27 final size:27
Alignment explanation
Indices: 32833888--32833951 Score: 74
Period size: 27 Copynumber: 2.4 Consensus size: 27
32833878 TATCCCATAA
*
32833888 GGTATCTCGGTAATTCCACCCTACAGG
1 GGTATCTCAGTAATTCCACCCTACAGG
* * * *
32833915 GGTATTTTAGTAATTCTACCCTACATG
1 GGTATCTCAGTAATTCCACCCTACAGG
*
32833942 GGTATTTCAG
1 GGTATCTCAG
32833952 GAACTTGAAG
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.23, C:0.22, G:0.20, T:0.34
Consensus pattern (27 bp):
GGTATCTCAGTAATTCCACCCTACAGG
Found at i:32834932 original size:6 final size:6
Alignment explanation
Indices: 32834914--32835026 Score: 65
Period size: 6 Copynumber: 18.3 Consensus size: 6
32834904 AAGAAACATT
* *
32834914 ATCAGA A-CTAGA ATCAGA ATCAGA ATTAG- GTGACA-A ATCAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA ATCAGA
* * *
32834962 ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA ATCAGT ATCAGGTA A-CAGA
1 ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA
*
32835012 ATCAAAA ATCAGA AT
1 ATC-AGA ATCAGA AT
32835027 GTGAATGCAA
Statistics
Matches: 82, Mismatches: 12, Indels: 26
0.68 0.10 0.22
Matches are distributed among these distances:
5 8 0.10
6 58 0.71
7 14 0.17
8 2 0.02
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:32834982 original size:19 final size:19
Alignment explanation
Indices: 32834958--32835015 Score: 58
Period size: 19 Copynumber: 3.4 Consensus size: 19
32834948 AAATCAGAAT
32834958 CAGAATCAGTATCAGGTAA
1 CAGAATCAGTATCAGGTAA
*
32834977 CAGAATCA--A--A---AT
1 CAGAATCAGTATCAGGTAA
32834989 CAGAATCAGTATCAGGTAA
1 CAGAATCAGTATCAGGTAA
32835008 CAGAATCA
1 CAGAATCA
32835016 AAAATCAGAA
Statistics
Matches: 30, Mismatches: 2, Indels: 14
0.65 0.04 0.30
Matches are distributed among these distances:
12 9 0.30
14 1 0.03
15 1 0.03
16 1 0.03
17 1 0.03
19 17 0.57
ACGTcount: A:0.47, C:0.17, G:0.17, T:0.19
Consensus pattern (19 bp):
CAGAATCAGTATCAGGTAA
Found at i:32834990 original size:31 final size:31
Alignment explanation
Indices: 32834925--32835026 Score: 152
Period size: 31 Copynumber: 3.3 Consensus size: 31
32834915 TCAGAACTAG
* * * *
32834925 AATCAGAATCAGAATTAGGTGACA-AATCAG
1 AATCAGAATCAGTATCAGGTAACAGAATCAA
32834955 AATCAGAATCAGTATCAGGTAACAGAATCAA
1 AATCAGAATCAGTATCAGGTAACAGAATCAA
32834986 AATCAGAATCAGTATCAGGTAACAGAATCAAA
1 AATCAGAATCAGTATCAGGTAACAGAATC-AA
32835018 AATCAGAAT
1 AATCAGAAT
32835027 GTGAATGCAA
Statistics
Matches: 66, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
30 21 0.32
31 34 0.52
32 11 0.17
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.20
Consensus pattern (31 bp):
AATCAGAATCAGTATCAGGTAACAGAATCAA
Found at i:32835425 original size:22 final size:22
Alignment explanation
Indices: 32835397--32835461 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
32835387 GCAAATACGT
*
32835397 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
32835419 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
*
32835441 TTGACACAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
32835462 AAGGCTTTAA
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 2 0.06
22 32 0.89
23 2 0.06
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:32835937 original size:27 final size:27
Alignment explanation
Indices: 32835907--32835970 Score: 74
Period size: 27 Copynumber: 2.4 Consensus size: 27
32835897 TATCCCATAA
*
32835907 GGTATCTCGGTAATTCCACCCTACAGG
1 GGTATCTCAGTAATTCCACCCTACAGG
* * * *
32835934 GGTATTTTAGTAATTCTACCCTACATG
1 GGTATCTCAGTAATTCCACCCTACAGG
*
32835961 GGTATTTCAG
1 GGTATCTCAG
32835971 GAACTTGAAG
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.23, C:0.22, G:0.20, T:0.34
Consensus pattern (27 bp):
GGTATCTCAGTAATTCCACCCTACAGG
Found at i:32836951 original size:6 final size:6
Alignment explanation
Indices: 32836933--32837045 Score: 65
Period size: 6 Copynumber: 18.3 Consensus size: 6
32836923 AAGAAACATT
* *
32836933 ATCAGA A-CTAGA ATCAGA ATCAGA ATTAG- GTGACA-A ATCAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA ATCAGA
* * *
32836981 ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA ATCAGT ATCAGGTA A-CAGA
1 ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA
*
32837031 ATCAAAA ATCAGA AT
1 ATC-AGA ATCAGA AT
32837046 GTGAATGCAA
Statistics
Matches: 82, Mismatches: 12, Indels: 26
0.68 0.10 0.22
Matches are distributed among these distances:
5 8 0.10
6 58 0.71
7 14 0.17
8 2 0.02
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:32837001 original size:19 final size:19
Alignment explanation
Indices: 32836977--32837034 Score: 58
Period size: 19 Copynumber: 3.4 Consensus size: 19
32836967 AAATCAGAAT
32836977 CAGAATCAGTATCAGGTAA
1 CAGAATCAGTATCAGGTAA
*
32836996 CAGAATCA--A--A---AT
1 CAGAATCAGTATCAGGTAA
32837008 CAGAATCAGTATCAGGTAA
1 CAGAATCAGTATCAGGTAA
32837027 CAGAATCA
1 CAGAATCA
32837035 AAAATCAGAA
Statistics
Matches: 30, Mismatches: 2, Indels: 14
0.65 0.04 0.30
Matches are distributed among these distances:
12 9 0.30
14 1 0.03
15 1 0.03
16 1 0.03
17 1 0.03
19 17 0.57
ACGTcount: A:0.47, C:0.17, G:0.17, T:0.19
Consensus pattern (19 bp):
CAGAATCAGTATCAGGTAA
Found at i:32837009 original size:31 final size:31
Alignment explanation
Indices: 32836944--32837045 Score: 152
Period size: 31 Copynumber: 3.3 Consensus size: 31
32836934 TCAGAACTAG
* * * *
32836944 AATCAGAATCAGAATTAGGTGACA-AATCAG
1 AATCAGAATCAGTATCAGGTAACAGAATCAA
32836974 AATCAGAATCAGTATCAGGTAACAGAATCAA
1 AATCAGAATCAGTATCAGGTAACAGAATCAA
32837005 AATCAGAATCAGTATCAGGTAACAGAATCAAA
1 AATCAGAATCAGTATCAGGTAACAGAATC-AA
32837037 AATCAGAAT
1 AATCAGAAT
32837046 GTGAATGCAA
Statistics
Matches: 66, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
30 21 0.32
31 34 0.52
32 11 0.17
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.20
Consensus pattern (31 bp):
AATCAGAATCAGTATCAGGTAACAGAATCAA
Found at i:32837444 original size:22 final size:22
Alignment explanation
Indices: 32837416--32837480 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
32837406 GCAAATACGT
*
32837416 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
32837438 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
*
32837460 TTGACACAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
32837481 AAGGCTTTAA
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 2 0.06
22 32 0.89
23 2 0.06
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:32837956 original size:27 final size:27
Alignment explanation
Indices: 32837926--32837989 Score: 74
Period size: 27 Copynumber: 2.4 Consensus size: 27
32837916 TATCCCATAA
*
32837926 GGTATCTCGGTAATTCCACCCTACAGG
1 GGTATCTCAGTAATTCCACCCTACAGG
* * * *
32837953 GGTATTTTAGTAATTCTACCCTACATG
1 GGTATCTCAGTAATTCCACCCTACAGG
*
32837980 GGTATTTCAG
1 GGTATCTCAG
32837990 GAACTTGAAG
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.23, C:0.22, G:0.20, T:0.34
Consensus pattern (27 bp):
GGTATCTCAGTAATTCCACCCTACAGG
Found at i:32838970 original size:6 final size:6
Alignment explanation
Indices: 32838952--32839064 Score: 65
Period size: 6 Copynumber: 18.3 Consensus size: 6
32838942 AAGAAACATT
* *
32838952 ATCAGA A-CTAGA ATCAGA ATCAGA ATTAG- GTGACA-A ATCAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA ATCAGA
* * *
32839000 ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA ATCAGT ATCAGGTA A-CAGA
1 ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA
*
32839050 ATCAAAA ATCAGA AT
1 ATC-AGA ATCAGA AT
32839065 GTGAATGCAA
Statistics
Matches: 82, Mismatches: 12, Indels: 26
0.68 0.10 0.22
Matches are distributed among these distances:
5 8 0.10
6 58 0.71
7 14 0.17
8 2 0.02
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:32839020 original size:19 final size:19
Alignment explanation
Indices: 32838996--32839053 Score: 58
Period size: 19 Copynumber: 3.4 Consensus size: 19
32838986 AAATCAGAAT
32838996 CAGAATCAGTATCAGGTAA
1 CAGAATCAGTATCAGGTAA
*
32839015 CAGAATCA--A--A---AT
1 CAGAATCAGTATCAGGTAA
32839027 CAGAATCAGTATCAGGTAA
1 CAGAATCAGTATCAGGTAA
32839046 CAGAATCA
1 CAGAATCA
32839054 AAAATCAGAA
Statistics
Matches: 30, Mismatches: 2, Indels: 14
0.65 0.04 0.30
Matches are distributed among these distances:
12 9 0.30
14 1 0.03
15 1 0.03
16 1 0.03
17 1 0.03
19 17 0.57
ACGTcount: A:0.47, C:0.17, G:0.17, T:0.19
Consensus pattern (19 bp):
CAGAATCAGTATCAGGTAA
Found at i:32839028 original size:31 final size:31
Alignment explanation
Indices: 32838963--32839064 Score: 152
Period size: 31 Copynumber: 3.3 Consensus size: 31
32838953 TCAGAACTAG
* * * *
32838963 AATCAGAATCAGAATTAGGTGACA-AATCAG
1 AATCAGAATCAGTATCAGGTAACAGAATCAA
32838993 AATCAGAATCAGTATCAGGTAACAGAATCAA
1 AATCAGAATCAGTATCAGGTAACAGAATCAA
32839024 AATCAGAATCAGTATCAGGTAACAGAATCAAA
1 AATCAGAATCAGTATCAGGTAACAGAATC-AA
32839056 AATCAGAAT
1 AATCAGAAT
32839065 GTGAATGCAA
Statistics
Matches: 66, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
30 21 0.32
31 34 0.52
32 11 0.17
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.20
Consensus pattern (31 bp):
AATCAGAATCAGTATCAGGTAACAGAATCAA
Found at i:32839463 original size:22 final size:22
Alignment explanation
Indices: 32839435--32839499 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
32839425 GCAAATACGT
*
32839435 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
32839457 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
*
32839479 TTGACACAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
32839500 AAGGCTTTAA
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 2 0.06
22 32 0.89
23 2 0.06
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:32839975 original size:27 final size:27
Alignment explanation
Indices: 32839945--32840008 Score: 74
Period size: 27 Copynumber: 2.4 Consensus size: 27
32839935 TATCCCATAA
*
32839945 GGTATCTCGGTAATTCCACCCTACAGG
1 GGTATCTCAGTAATTCCACCCTACAGG
* * * *
32839972 GGTATTTTAGTAATTCTACCCTACATG
1 GGTATCTCAGTAATTCCACCCTACAGG
*
32839999 GGTATTTCAG
1 GGTATCTCAG
32840009 GAACTTGAAG
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.23, C:0.22, G:0.20, T:0.34
Consensus pattern (27 bp):
GGTATCTCAGTAATTCCACCCTACAGG
Found at i:32840989 original size:6 final size:6
Alignment explanation
Indices: 32840971--32841083 Score: 65
Period size: 6 Copynumber: 18.3 Consensus size: 6
32840961 AAGAAACATT
* *
32840971 ATCAGA A-CTAGA ATCAGA ATCAGA ATTAG- GTGACA-A ATCAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA ATCAGA
* * *
32841019 ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA ATCAGT ATCAGGTA A-CAGA
1 ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA
*
32841069 ATCAAAA ATCAGA AT
1 ATC-AGA ATCAGA AT
32841084 GTGAATGCAA
Statistics
Matches: 82, Mismatches: 12, Indels: 26
0.68 0.10 0.22
Matches are distributed among these distances:
5 8 0.10
6 58 0.71
7 14 0.17
8 2 0.02
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:32841039 original size:19 final size:19
Alignment explanation
Indices: 32841015--32841072 Score: 58
Period size: 19 Copynumber: 3.4 Consensus size: 19
32841005 AAATCAGAAT
32841015 CAGAATCAGTATCAGGTAA
1 CAGAATCAGTATCAGGTAA
*
32841034 CAGAATCA--A--A---AT
1 CAGAATCAGTATCAGGTAA
32841046 CAGAATCAGTATCAGGTAA
1 CAGAATCAGTATCAGGTAA
32841065 CAGAATCA
1 CAGAATCA
32841073 AAAATCAGAA
Statistics
Matches: 30, Mismatches: 2, Indels: 14
0.65 0.04 0.30
Matches are distributed among these distances:
12 9 0.30
14 1 0.03
15 1 0.03
16 1 0.03
17 1 0.03
19 17 0.57
ACGTcount: A:0.47, C:0.17, G:0.17, T:0.19
Consensus pattern (19 bp):
CAGAATCAGTATCAGGTAA
Found at i:32841047 original size:31 final size:31
Alignment explanation
Indices: 32840982--32841083 Score: 152
Period size: 31 Copynumber: 3.3 Consensus size: 31
32840972 TCAGAACTAG
* * * *
32840982 AATCAGAATCAGAATTAGGTGACA-AATCAG
1 AATCAGAATCAGTATCAGGTAACAGAATCAA
32841012 AATCAGAATCAGTATCAGGTAACAGAATCAA
1 AATCAGAATCAGTATCAGGTAACAGAATCAA
32841043 AATCAGAATCAGTATCAGGTAACAGAATCAAA
1 AATCAGAATCAGTATCAGGTAACAGAATC-AA
32841075 AATCAGAAT
1 AATCAGAAT
32841084 GTGAATGCAA
Statistics
Matches: 66, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
30 21 0.32
31 34 0.52
32 11 0.17
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.20
Consensus pattern (31 bp):
AATCAGAATCAGTATCAGGTAACAGAATCAA
Found at i:32841482 original size:22 final size:22
Alignment explanation
Indices: 32841454--32841518 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
32841444 GCAAATACGT
*
32841454 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
32841476 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
*
32841498 TTGACACAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
32841519 AAGGCTTTAA
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 2 0.06
22 32 0.89
23 2 0.06
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:32841994 original size:27 final size:27
Alignment explanation
Indices: 32841964--32842027 Score: 74
Period size: 27 Copynumber: 2.4 Consensus size: 27
32841954 TATCCCATAA
*
32841964 GGTATCTCGGTAATTCCACCCTACAGG
1 GGTATCTCAGTAATTCCACCCTACAGG
* * * *
32841991 GGTATTTTAGTAATTCTACCCTACATG
1 GGTATCTCAGTAATTCCACCCTACAGG
*
32842018 GGTATTTCAG
1 GGTATCTCAG
32842028 GAACTTGAAG
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.23, C:0.22, G:0.20, T:0.34
Consensus pattern (27 bp):
GGTATCTCAGTAATTCCACCCTACAGG
Found at i:32843008 original size:6 final size:6
Alignment explanation
Indices: 32842990--32843102 Score: 65
Period size: 6 Copynumber: 18.3 Consensus size: 6
32842980 AAGAAACATT
* *
32842990 ATCAGA A-CTAGA ATCAGA ATCAGA ATTAG- GTGACA-A ATCAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA ATCAGA
* * *
32843038 ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA ATCAGT ATCAGGTA A-CAGA
1 ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA
*
32843088 ATCAAAA ATCAGA AT
1 ATC-AGA ATCAGA AT
32843103 GTGAATGCAA
Statistics
Matches: 82, Mismatches: 12, Indels: 26
0.68 0.10 0.22
Matches are distributed among these distances:
5 8 0.10
6 58 0.71
7 14 0.17
8 2 0.02
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:32843058 original size:19 final size:19
Alignment explanation
Indices: 32843034--32843091 Score: 58
Period size: 19 Copynumber: 3.4 Consensus size: 19
32843024 AAATCAGAAT
32843034 CAGAATCAGTATCAGGTAA
1 CAGAATCAGTATCAGGTAA
*
32843053 CAGAATCA--A--A---AT
1 CAGAATCAGTATCAGGTAA
32843065 CAGAATCAGTATCAGGTAA
1 CAGAATCAGTATCAGGTAA
32843084 CAGAATCA
1 CAGAATCA
32843092 AAAATCAGAA
Statistics
Matches: 30, Mismatches: 2, Indels: 14
0.65 0.04 0.30
Matches are distributed among these distances:
12 9 0.30
14 1 0.03
15 1 0.03
16 1 0.03
17 1 0.03
19 17 0.57
ACGTcount: A:0.47, C:0.17, G:0.17, T:0.19
Consensus pattern (19 bp):
CAGAATCAGTATCAGGTAA
Found at i:32843066 original size:31 final size:31
Alignment explanation
Indices: 32843001--32843102 Score: 152
Period size: 31 Copynumber: 3.3 Consensus size: 31
32842991 TCAGAACTAG
* * * *
32843001 AATCAGAATCAGAATTAGGTGACA-AATCAG
1 AATCAGAATCAGTATCAGGTAACAGAATCAA
32843031 AATCAGAATCAGTATCAGGTAACAGAATCAA
1 AATCAGAATCAGTATCAGGTAACAGAATCAA
32843062 AATCAGAATCAGTATCAGGTAACAGAATCAAA
1 AATCAGAATCAGTATCAGGTAACAGAATC-AA
32843094 AATCAGAAT
1 AATCAGAAT
32843103 GTGAATGCAA
Statistics
Matches: 66, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
30 21 0.32
31 34 0.52
32 11 0.17
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.20
Consensus pattern (31 bp):
AATCAGAATCAGTATCAGGTAACAGAATCAA
Found at i:32843501 original size:22 final size:22
Alignment explanation
Indices: 32843473--32843537 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
32843463 GCAAATACGT
*
32843473 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
32843495 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
*
32843517 TTGACACAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
32843538 AAGGCTTTAA
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 2 0.06
22 32 0.89
23 2 0.06
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:32844013 original size:27 final size:27
Alignment explanation
Indices: 32843983--32844046 Score: 74
Period size: 27 Copynumber: 2.4 Consensus size: 27
32843973 TATCCCATAA
*
32843983 GGTATCTCGGTAATTCCACCCTACAGG
1 GGTATCTCAGTAATTCCACCCTACAGG
* * * *
32844010 GGTATTTTAGTAATTCTACCCTACATG
1 GGTATCTCAGTAATTCCACCCTACAGG
*
32844037 GGTATTTCAG
1 GGTATCTCAG
32844047 GAACTTGAAG
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.23, C:0.22, G:0.20, T:0.34
Consensus pattern (27 bp):
GGTATCTCAGTAATTCCACCCTACAGG
Found at i:32845027 original size:6 final size:6
Alignment explanation
Indices: 32845009--32845121 Score: 65
Period size: 6 Copynumber: 18.3 Consensus size: 6
32844999 AAGAAACATT
* *
32845009 ATCAGA A-CTAGA ATCAGA ATCAGA ATTAG- GTGACA-A ATCAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA ATCAGA
* * *
32845057 ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA ATCAGT ATCAGGTA A-CAGA
1 ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA
*
32845107 ATCAAAA ATCAGA AT
1 ATC-AGA ATCAGA AT
32845122 GTGAATGCAA
Statistics
Matches: 82, Mismatches: 12, Indels: 26
0.68 0.10 0.22
Matches are distributed among these distances:
5 8 0.10
6 58 0.71
7 14 0.17
8 2 0.02
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:32845077 original size:19 final size:19
Alignment explanation
Indices: 32845053--32845110 Score: 58
Period size: 19 Copynumber: 3.4 Consensus size: 19
32845043 AAATCAGAAT
32845053 CAGAATCAGTATCAGGTAA
1 CAGAATCAGTATCAGGTAA
*
32845072 CAGAATCA--A--A---AT
1 CAGAATCAGTATCAGGTAA
32845084 CAGAATCAGTATCAGGTAA
1 CAGAATCAGTATCAGGTAA
32845103 CAGAATCA
1 CAGAATCA
32845111 AAAATCAGAA
Statistics
Matches: 30, Mismatches: 2, Indels: 14
0.65 0.04 0.30
Matches are distributed among these distances:
12 9 0.30
14 1 0.03
15 1 0.03
16 1 0.03
17 1 0.03
19 17 0.57
ACGTcount: A:0.47, C:0.17, G:0.17, T:0.19
Consensus pattern (19 bp):
CAGAATCAGTATCAGGTAA
Found at i:32845085 original size:31 final size:31
Alignment explanation
Indices: 32845020--32845121 Score: 152
Period size: 31 Copynumber: 3.3 Consensus size: 31
32845010 TCAGAACTAG
* * * *
32845020 AATCAGAATCAGAATTAGGTGACA-AATCAG
1 AATCAGAATCAGTATCAGGTAACAGAATCAA
32845050 AATCAGAATCAGTATCAGGTAACAGAATCAA
1 AATCAGAATCAGTATCAGGTAACAGAATCAA
32845081 AATCAGAATCAGTATCAGGTAACAGAATCAAA
1 AATCAGAATCAGTATCAGGTAACAGAATC-AA
32845113 AATCAGAAT
1 AATCAGAAT
32845122 GTGAATGCAA
Statistics
Matches: 66, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
30 21 0.32
31 34 0.52
32 11 0.17
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.20
Consensus pattern (31 bp):
AATCAGAATCAGTATCAGGTAACAGAATCAA
Found at i:32845520 original size:22 final size:22
Alignment explanation
Indices: 32845492--32845556 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
32845482 GCAAATACGT
*
32845492 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
32845514 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
*
32845536 TTGACACAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
32845557 AAGGCTTTAA
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 2 0.06
22 32 0.89
23 2 0.06
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:32846031 original size:27 final size:27
Alignment explanation
Indices: 32846001--32846064 Score: 74
Period size: 27 Copynumber: 2.4 Consensus size: 27
32845991 TATCCCATAA
*
32846001 GGTATCTCGGTAATTCCACCCTACAGG
1 GGTATCTCAGTAATTCCACCCTACAGG
* * * *
32846028 GGTATTTTAGTAATTCTACCCTACATG
1 GGTATCTCAGTAATTCCACCCTACAGG
*
32846055 GGTATTTCAG
1 GGTATCTCAG
32846065 GAACTTGAAG
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.23, C:0.22, G:0.20, T:0.34
Consensus pattern (27 bp):
GGTATCTCAGTAATTCCACCCTACAGG
Found at i:32847045 original size:6 final size:6
Alignment explanation
Indices: 32847027--32847139 Score: 65
Period size: 6 Copynumber: 18.3 Consensus size: 6
32847017 AAGAAACATT
* *
32847027 ATCAGA A-CTAGA ATCAGA ATCAGA ATTAG- GTGACA-A ATCAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA ATCAGA
* * *
32847075 ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA ATCAGT ATCAGGTA A-CAGA
1 ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA
*
32847125 ATCAAAA ATCAGA AT
1 ATC-AGA ATCAGA AT
32847140 GTGAATGCAA
Statistics
Matches: 82, Mismatches: 12, Indels: 26
0.68 0.10 0.22
Matches are distributed among these distances:
5 8 0.10
6 58 0.71
7 14 0.17
8 2 0.02
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:32847095 original size:19 final size:19
Alignment explanation
Indices: 32847071--32847128 Score: 58
Period size: 19 Copynumber: 3.4 Consensus size: 19
32847061 AAATCAGAAT
32847071 CAGAATCAGTATCAGGTAA
1 CAGAATCAGTATCAGGTAA
*
32847090 CAGAATCA--A--A---AT
1 CAGAATCAGTATCAGGTAA
32847102 CAGAATCAGTATCAGGTAA
1 CAGAATCAGTATCAGGTAA
32847121 CAGAATCA
1 CAGAATCA
32847129 AAAATCAGAA
Statistics
Matches: 30, Mismatches: 2, Indels: 14
0.65 0.04 0.30
Matches are distributed among these distances:
12 9 0.30
14 1 0.03
15 1 0.03
16 1 0.03
17 1 0.03
19 17 0.57
ACGTcount: A:0.47, C:0.17, G:0.17, T:0.19
Consensus pattern (19 bp):
CAGAATCAGTATCAGGTAA
Found at i:32847103 original size:31 final size:31
Alignment explanation
Indices: 32847038--32847139 Score: 152
Period size: 31 Copynumber: 3.3 Consensus size: 31
32847028 TCAGAACTAG
* * * *
32847038 AATCAGAATCAGAATTAGGTGACA-AATCAG
1 AATCAGAATCAGTATCAGGTAACAGAATCAA
32847068 AATCAGAATCAGTATCAGGTAACAGAATCAA
1 AATCAGAATCAGTATCAGGTAACAGAATCAA
32847099 AATCAGAATCAGTATCAGGTAACAGAATCAAA
1 AATCAGAATCAGTATCAGGTAACAGAATC-AA
32847131 AATCAGAAT
1 AATCAGAAT
32847140 GTGAATGCAA
Statistics
Matches: 66, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
30 21 0.32
31 34 0.52
32 11 0.17
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.20
Consensus pattern (31 bp):
AATCAGAATCAGTATCAGGTAACAGAATCAA
Found at i:32847538 original size:22 final size:22
Alignment explanation
Indices: 32847510--32847574 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
32847500 GCAAATACGT
*
32847510 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
32847532 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
*
32847554 TTGACACAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
32847575 AAGGCTTTAA
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 2 0.06
22 32 0.89
23 2 0.06
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:32848050 original size:27 final size:27
Alignment explanation
Indices: 32848020--32848083 Score: 74
Period size: 27 Copynumber: 2.4 Consensus size: 27
32848010 TATCCCATAA
*
32848020 GGTATCTCGGTAATTCCACCCTACAGG
1 GGTATCTCAGTAATTCCACCCTACAGG
* * * *
32848047 GGTATTTTAGTAATTCTACCCTACATG
1 GGTATCTCAGTAATTCCACCCTACAGG
*
32848074 GGTATTTCAG
1 GGTATCTCAG
32848084 GAACTTGAAG
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.23, C:0.22, G:0.20, T:0.34
Consensus pattern (27 bp):
GGTATCTCAGTAATTCCACCCTACAGG
Found at i:32849064 original size:6 final size:6
Alignment explanation
Indices: 32849046--32849158 Score: 65
Period size: 6 Copynumber: 18.3 Consensus size: 6
32849036 AAGAAACATT
* *
32849046 ATCAGA A-CTAGA ATCAGA ATCAGA ATTAG- GTGACA-A ATCAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA ATCAGA
* * *
32849094 ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA ATCAGT ATCAGGTA A-CAGA
1 ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA
*
32849144 ATCAAAA ATCAGA AT
1 ATC-AGA ATCAGA AT
32849159 GTGAATGCAA
Statistics
Matches: 82, Mismatches: 12, Indels: 26
0.68 0.10 0.22
Matches are distributed among these distances:
5 8 0.10
6 58 0.71
7 14 0.17
8 2 0.02
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:32849114 original size:19 final size:19
Alignment explanation
Indices: 32849090--32849147 Score: 58
Period size: 19 Copynumber: 3.4 Consensus size: 19
32849080 AAATCAGAAT
32849090 CAGAATCAGTATCAGGTAA
1 CAGAATCAGTATCAGGTAA
*
32849109 CAGAATCA--A--A---AT
1 CAGAATCAGTATCAGGTAA
32849121 CAGAATCAGTATCAGGTAA
1 CAGAATCAGTATCAGGTAA
32849140 CAGAATCA
1 CAGAATCA
32849148 AAAATCAGAA
Statistics
Matches: 30, Mismatches: 2, Indels: 14
0.65 0.04 0.30
Matches are distributed among these distances:
12 9 0.30
14 1 0.03
15 1 0.03
16 1 0.03
17 1 0.03
19 17 0.57
ACGTcount: A:0.47, C:0.17, G:0.17, T:0.19
Consensus pattern (19 bp):
CAGAATCAGTATCAGGTAA
Found at i:32849122 original size:31 final size:31
Alignment explanation
Indices: 32849057--32849158 Score: 152
Period size: 31 Copynumber: 3.3 Consensus size: 31
32849047 TCAGAACTAG
* * * *
32849057 AATCAGAATCAGAATTAGGTGACA-AATCAG
1 AATCAGAATCAGTATCAGGTAACAGAATCAA
32849087 AATCAGAATCAGTATCAGGTAACAGAATCAA
1 AATCAGAATCAGTATCAGGTAACAGAATCAA
32849118 AATCAGAATCAGTATCAGGTAACAGAATCAAA
1 AATCAGAATCAGTATCAGGTAACAGAATC-AA
32849150 AATCAGAAT
1 AATCAGAAT
32849159 GTGAATGCAA
Statistics
Matches: 66, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
30 21 0.32
31 34 0.52
32 11 0.17
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.20
Consensus pattern (31 bp):
AATCAGAATCAGTATCAGGTAACAGAATCAA
Found at i:32849557 original size:22 final size:22
Alignment explanation
Indices: 32849529--32849593 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
32849519 GCAAATACGT
*
32849529 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
32849551 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
*
32849573 TTGACACAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
32849594 AAGGCTTTAA
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 2 0.06
22 32 0.89
23 2 0.06
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:32850069 original size:27 final size:27
Alignment explanation
Indices: 32850039--32850102 Score: 65
Period size: 27 Copynumber: 2.4 Consensus size: 27
32850029 TATCCCATAA
* *
32850039 GGTATCTCGGTAATTCCGCCCTACAGG
1 GGTATCTCAGTAATTCCACCCTACAGG
* * * *
32850066 GGTATTTTAGTAATTCTACCCTACATG
1 GGTATCTCAGTAATTCCACCCTACAGG
*
32850093 GGTATTTCAG
1 GGTATCTCAG
32850103 GAACTTGAAG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.22, C:0.22, G:0.22, T:0.34
Consensus pattern (27 bp):
GGTATCTCAGTAATTCCACCCTACAGG
Found at i:32851082 original size:6 final size:6
Alignment explanation
Indices: 32851064--32851176 Score: 65
Period size: 6 Copynumber: 18.3 Consensus size: 6
32851054 AAGAAACATT
* *
32851064 ATCAGA A-CTAGA ATCAGA ATCAGA ATTAG- GTGACA-A ATCAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA ATCAGA
* * *
32851112 ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA ATCAGT ATCAGGTA A-CAGA
1 ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA
*
32851162 ATCAAAA ATCAGA AT
1 ATC-AGA ATCAGA AT
32851177 GTGAATGCAA
Statistics
Matches: 82, Mismatches: 12, Indels: 26
0.68 0.10 0.22
Matches are distributed among these distances:
5 8 0.10
6 58 0.71
7 14 0.17
8 2 0.02
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:32851132 original size:19 final size:19
Alignment explanation
Indices: 32851108--32851165 Score: 58
Period size: 19 Copynumber: 3.4 Consensus size: 19
32851098 AAATCAGAAT
32851108 CAGAATCAGTATCAGGTAA
1 CAGAATCAGTATCAGGTAA
*
32851127 CAGAATCA--A--A---AT
1 CAGAATCAGTATCAGGTAA
32851139 CAGAATCAGTATCAGGTAA
1 CAGAATCAGTATCAGGTAA
32851158 CAGAATCA
1 CAGAATCA
32851166 AAAATCAGAA
Statistics
Matches: 30, Mismatches: 2, Indels: 14
0.65 0.04 0.30
Matches are distributed among these distances:
12 9 0.30
14 1 0.03
15 1 0.03
16 1 0.03
17 1 0.03
19 17 0.57
ACGTcount: A:0.47, C:0.17, G:0.17, T:0.19
Consensus pattern (19 bp):
CAGAATCAGTATCAGGTAA
Found at i:32851140 original size:31 final size:31
Alignment explanation
Indices: 32851075--32851176 Score: 152
Period size: 31 Copynumber: 3.3 Consensus size: 31
32851065 TCAGAACTAG
* * * *
32851075 AATCAGAATCAGAATTAGGTGACA-AATCAG
1 AATCAGAATCAGTATCAGGTAACAGAATCAA
32851105 AATCAGAATCAGTATCAGGTAACAGAATCAA
1 AATCAGAATCAGTATCAGGTAACAGAATCAA
32851136 AATCAGAATCAGTATCAGGTAACAGAATCAAA
1 AATCAGAATCAGTATCAGGTAACAGAATC-AA
32851168 AATCAGAAT
1 AATCAGAAT
32851177 GTGAATGCAA
Statistics
Matches: 66, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
30 21 0.32
31 34 0.52
32 11 0.17
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.20
Consensus pattern (31 bp):
AATCAGAATCAGTATCAGGTAACAGAATCAA
Found at i:32851575 original size:22 final size:22
Alignment explanation
Indices: 32851547--32851611 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
32851537 GCAAATACGT
*
32851547 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
32851569 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
*
32851591 TTGACACAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
32851612 AAGGCTTTAA
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 2 0.06
22 32 0.89
23 2 0.06
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:32852530 original size:27 final size:27
Alignment explanation
Indices: 32852057--32852522 Score: 610
Period size: 27 Copynumber: 17.3 Consensus size: 27
32852047 TATCCCATAA
* *
32852057 GGTATCTCGGTAATTCCACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
** *
32852084 GGTATTTTAGTAATTCTACCCTACATG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
32852111 GGTATTTCAGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* * *
32852138 GGTATTGT-GATAATTTTACCCTATAGG
1 GGTATT-TCGGTAATTCTACCCTACAGG
32852165 GGTATTTCGGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
32852192 GGTATTTTGGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
32852219 GGTATTTCGGTAATTCTACCTTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* * * *
32852246 GCTATTTTGGTAATTCTACCTTACAGA
1 GGTATTTCGGTAATTCTACCCTACAGG
* * *
32852273 GGTATTTCGATATTTCTACCCTACAAG
1 GGTATTTCGGTAATTCTACCCTACAGG
* * *
32852300 GGTAGTTCGGTATTTCTACCCTACAAG
1 GGTATTTCGGTAATTCTACCCTACAGG
**
32852327 GGTATTTTAGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* *
32852354 GGTATTTCGGTATTTCTACCCTACAAG
1 GGTATTTCGGTAATTCTACCCTACAGG
* * *
32852381 GGTATTTCGATATTTCTACCCTACAAG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
32852408 GGTATTTCGATAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
32852435 GGTATTTCAGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* **
32852462 GGTATTTCGGTATTTCTACCCTACAAA
1 GGTATTTCGGTAATTCTACCCTACAGG
*
32852489 GGTATTTAGGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
32852516 GGTATTT
1 GGTATTT
32852523 TAATAATTTT
Statistics
Matches: 386, Mismatches: 51, Indels: 4
0.88 0.12 0.01
Matches are distributed among these distances:
26 1 0.00
27 384 0.99
28 1 0.00
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.36
Consensus pattern (27 bp):
GGTATTTCGGTAATTCTACCCTACAGG
Found at i:32852610 original size:54 final size:51
Alignment explanation
Indices: 32852552--32852698 Score: 179
Period size: 54 Copynumber: 2.7 Consensus size: 51
32852542 AGGTAGAACG
32852552 GTAATTCTGTAAATCAGGGGTACTTTGGTAATTTTACAAATCGAGGGTATTTCA
1 GTAATT-T-TAAATCAGGGGTA-TTTGGTAATTTTACAAATCGAGGGTATTTCA
*
32852606 GTAATTTTACAAATC-GAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCA
1 GTAATTTT--AAATCAG-GGGTATTT-GGTAATTTTACAAATCGAGGGTATTTCA
* *
32852660 GTAATTTTACAAACAAGGGTATTTTGGTAATTTTACAAA
1 GTAATTTTA-AATCAGGGGTA-TTTGGTAATTTTACAAA
32852699 CCAGGGGTAT
Statistics
Matches: 82, Mismatches: 4, Indels: 15
0.81 0.04 0.15
Matches are distributed among these distances:
52 2 0.02
53 26 0.32
54 54 0.66
ACGTcount: A:0.33, C:0.10, G:0.19, T:0.37
Consensus pattern (51 bp):
GTAATTTTAAATCAGGGGTATTTGGTAATTTTACAAATCGAGGGTATTTCA
Found at i:32852620 original size:81 final size:80
Alignment explanation
Indices: 32852515--32852698 Score: 183
Period size: 81 Copynumber: 2.3 Consensus size: 80
32852505 TACCCTACAG
* ** * **
32852515 GGGTATTTTAATAATTTTGTAAATCAAAGGTAGAACGGTAATTCTGTAAATC-AGGGGTACTTT-
1 GGGTATTTTAGTAATTTTACAAATCAAAGGTAGAACAGTAATTCTACAAATCGA-GGGTA-TTTC
* *
32852578 GGTAATTTTACAAATCGA
64 AGTAATTTTACAAA-CAA
* * * *** *
32852596 GGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCAG
1 GGGTATTTTAGTAATTTTACAAATCAAAGGTAGAACAGTAATTCTACAAATCGAGGGTATTTCAG
32852661 TAATTTTACAAACAA
66 TAATTTTACAAACAA
*
32852676 GGGTATTTTGGTAATTTTACAAA
1 GGGTATTTTAGTAATTTTACAAA
32852699 CCAGGGGTAT
Statistics
Matches: 84, Mismatches: 17, Indels: 5
0.79 0.16 0.05
Matches are distributed among these distances:
80 26 0.31
81 57 0.68
82 1 0.01
ACGTcount: A:0.34, C:0.09, G:0.20, T:0.37
Consensus pattern (80 bp):
GGGTATTTTAGTAATTTTACAAATCAAAGGTAGAACAGTAATTCTACAAATCGAGGGTATTTCAG
TAATTTTACAAACAA
Found at i:32852704 original size:26 final size:27
Alignment explanation
Indices: 32852579--32852698 Score: 206
Period size: 27 Copynumber: 4.5 Consensus size: 27
32852569 GGGTACTTTG
32852579 GTAATTTTACAAATCGAGGGTATTTCA
1 GTAATTTTACAAATCGAGGGTATTTCA
32852606 GTAATTTTACAAATCGAGGGTATTTCA
1 GTAATTTTACAAATCGAGGGTATTTCA
32852633 GTAATTTTACAAATCGAGGGTATTTCA
1 GTAATTTTACAAATCGAGGGTATTTCA
* **
32852660 GTAATTTTACAAA-CAAGGGTATTTTG
1 GTAATTTTACAAATCGAGGGTATTTCA
32852686 GTAATTTTACAAA
1 GTAATTTTACAAA
32852699 CCAGGGGTAT
Statistics
Matches: 90, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
26 23 0.26
27 67 0.74
ACGTcount: A:0.35, C:0.10, G:0.17, T:0.38
Consensus pattern (27 bp):
GTAATTTTACAAATCGAGGGTATTTCA
Found at i:32852719 original size:27 final size:26
Alignment explanation
Indices: 32852569--32852719 Score: 113
Period size: 27 Copynumber: 5.7 Consensus size: 26
32852559 TGTAAATCAG
* * *
32852569 GGGTACTTTGGTAATTTTACAAATCGA
1 GGGTATTTTGGCAATTTTACAAA-CAA
** * *
32852596 GGGTATTTCAGTAATTTTACAAATCGA
1 GGGTATTTTGGCAATTTTACAAA-CAA
** * *
32852623 GGGTATTTCAGTAATTTTACAAATCGA
1 GGGTATTTTGGCAATTTTACAAA-CAA
** *
32852650 GGGTATTTCAGTAATTTTACAAACAA
1 GGGTATTTTGGCAATTTTACAAACAA
* *
32852676 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGCAATTTTACAAA-CAA
*
32852703 GGGTATTTTGGCGATTT
1 GGGTATTTTGGCAATTT
32852720 GGTAAACTAA
Statistics
Matches: 114, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
26 23 0.20
27 91 0.80
ACGTcount: A:0.30, C:0.11, G:0.21, T:0.38
Consensus pattern (26 bp):
GGGTATTTTGGCAATTTTACAAACAA
Found at i:32854070 original size:47 final size:45
Alignment explanation
Indices: 32853960--32854079 Score: 120
Period size: 47 Copynumber: 2.6 Consensus size: 45
32853950 GTTACTGTGG
32853960 GCTAGTGTAAAACATGTCTGGGACATGCATCAGCCACATTATGAGA
1 GCTAGTGTAAAACATGTCTGGGACATGCATCAG-CACATTATGAGA
* * *
32854006 GCCAGTGTAAGACCATGTCTGGGACATGGCATC-G-GCATTGA-GACGA
1 GCTAGTGTAA-AACATGTCTGGGACAT-GCATCAGCACATT-ATGA-GA
*
32854052 GTGCTAGTGTAACACATGTCTGGGACAT
1 --GCTAGTGTAAAACATGTCTGGGACAT
32854080 TTATCGGCCT
Statistics
Matches: 62, Mismatches: 6, Indels: 11
0.78 0.08 0.14
Matches are distributed among these distances:
45 6 0.10
46 12 0.19
47 30 0.48
48 14 0.23
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.23
Consensus pattern (45 bp):
GCTAGTGTAAAACATGTCTGGGACATGCATCAGCACATTATGAGA
Found at i:32861681 original size:14 final size:14
Alignment explanation
Indices: 32861662--32861691 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
32861652 TATTTTAGTA
32861662 TTGTTTCTGTAAAT
1 TTGTTTCTGTAAAT
32861676 TTGTTTCTGTAAAT
1 TTGTTTCTGTAAAT
32861690 TT
1 TT
32861692 CCCAAGCATG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.20, C:0.07, G:0.13, T:0.60
Consensus pattern (14 bp):
TTGTTTCTGTAAAT
Found at i:32867050 original size:16 final size:19
Alignment explanation
Indices: 32867002--32867051 Score: 52
Period size: 18 Copynumber: 2.6 Consensus size: 19
32866992 TTTAATCTTA
32867002 TAATAAATTATTGATATAAT
1 TAATAAATTATTGATAT-AT
32867022 TAATATAATTTATT-AT-T-T
1 TAATA-AA-TTATTGATATAT
32867040 TAATAAATTATT
1 TAATAAATTATT
32867052 TAATATTTCA
Statistics
Matches: 28, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
16 5 0.18
17 2 0.07
18 6 0.21
20 6 0.21
21 4 0.14
22 5 0.18
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (19 bp):
TAATAAATTATTGATATAT
Found at i:32867082 original size:12 final size:13
Alignment explanation
Indices: 32867065--32867106 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
32867055 TATTTCAATT
32867065 TAATTTT-AATAA
1 TAATTTTAAATAA
*
32867077 TAATTTTTTAAAAAA
1 TAA--TTTTAAATAA
32867092 TAATTTTAAATAA
1 TAATTTTAAATAA
32867105 TA
1 TA
32867107 TTCTTCATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
12 3 0.12
13 11 0.44
14 4 0.16
15 7 0.28
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (13 bp):
TAATTTTAAATAA
Found at i:32867675 original size:14 final size:15
Alignment explanation
Indices: 32867656--32867686 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
32867646 AAAAATAAGT
32867656 AATTTTCTG-GAAAC
1 AATTTTCTGTGAAAC
32867670 AATTTTCTGTGAAAC
1 AATTTTCTGTGAAAC
32867685 AA
1 AA
32867687 ATAGACCCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.56
15 7 0.44
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.35
Consensus pattern (15 bp):
AATTTTCTGTGAAAC
Found at i:32873263 original size:21 final size:21
Alignment explanation
Indices: 32873237--32873277 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
32873227 CAACGTGGAA
32873237 AGTTAAATGGCCACATCAGCT
1 AGTTAAATGGCCACATCAGCT
* * *
32873258 AGTTAACTTGCCATATCAGC
1 AGTTAAATGGCCACATCAGC
32873278 GGTCCAACTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.27
Consensus pattern (21 bp):
AGTTAAATGGCCACATCAGCT
Found at i:32874440 original size:20 final size:21
Alignment explanation
Indices: 32874393--32874460 Score: 83
Period size: 20 Copynumber: 3.4 Consensus size: 21
32874383 AACTATAATA
32874393 TTATAAAAAATTATTAAA-AT-
1 TTATAAAAAATTA-TAAATATG
32874413 TTACT-AAAAATTATAAATATG
1 TTA-TAAAAAATTATAAATATG
32874434 TTATAAAAAATT-TAAATATG
1 TTATAAAAAATTATAAATATG
32874454 TTA-AAAA
1 TTATAAAA
32874461 TTTCAAAAAA
Statistics
Matches: 44, Mismatches: 0, Indels: 9
0.83 0.00 0.17
Matches are distributed among these distances:
19 8 0.18
20 25 0.57
21 11 0.25
ACGTcount: A:0.57, C:0.01, G:0.03, T:0.38
Consensus pattern (21 bp):
TTATAAAAAATTATAAATATG
Found at i:32874527 original size:23 final size:23
Alignment explanation
Indices: 32874501--32874579 Score: 95
Period size: 23 Copynumber: 3.4 Consensus size: 23
32874491 GTGAAATATG
*
32874501 GTGCTAGAATGAATTGCACCGTA
1 GTGCTAGAATGAATTGCACCGAA
* **
32874524 GTGCCAGAATGAATTGCACTAAA
1 GTGCTAGAATGAATTGCACCGAA
* *
32874547 GTGCAAGAATGAATTGCATCGAA
1 GTGCTAGAATGAATTGCACCGAA
*
32874570 GTACTAGAAT
1 GTGCTAGAAT
32874580 ACTCCCGCCA
Statistics
Matches: 46, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.37, C:0.15, G:0.24, T:0.24
Consensus pattern (23 bp):
GTGCTAGAATGAATTGCACCGAA
Found at i:32879423 original size:46 final size:46
Alignment explanation
Indices: 32879356--32879530 Score: 176
Period size: 46 Copynumber: 3.8 Consensus size: 46
32879346 ATGTAACCCG
* *
32879356 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCGTTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTTGCAT
* * * * *
32879402 CCATAAGTGAACTCAGACTCAACTCAACAAGCTCGAATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCG---GGC-ATTTGCAT
* * * *
32879452 CCCT---TGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTTGCAT
* *
32879495 CCATAAGTGAACTCGAACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
32879531 ATGCCCAAAT
Statistics
Matches: 105, Mismatches: 17, Indels: 14
0.77 0.12 0.10
Matches are distributed among these distances:
43 8 0.08
44 2 0.02
46 60 0.57
47 25 0.24
49 2 0.02
50 8 0.08
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTTGCAT
Found at i:32883910 original size:24 final size:25
Alignment explanation
Indices: 32883882--32883930 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
32883872 ACATTGTAAA
*
32883882 TAAAA-AAAATCTTTAGAAATTTTT
1 TAAAATAAAATCTTTAGAAAATTTT
**
32883906 TAAAATAATCTCTTTAGAAAATTTT
1 TAAAATAAAATCTTTAGAAAATTTT
32883931 CTCTCTACAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
24 5 0.24
25 16 0.76
ACGTcount: A:0.47, C:0.06, G:0.04, T:0.43
Consensus pattern (25 bp):
TAAAATAAAATCTTTAGAAAATTTT
Found at i:32884143 original size:62 final size:59
Alignment explanation
Indices: 32884038--32884154 Score: 153
Period size: 62 Copynumber: 1.9 Consensus size: 59
32884028 ATCACTTTAA
* * *
32884038 TATTAAATTAATATAATACTTATCAAGATAAATATTATATTAAATTTAATATTAAATCT
1 TATTAAATTAATAGAATACTTATCAAGATAAACATTAAATTAAATTTAATATTAAATCT
* * *
32884097 TATTAAATTAATAGAATATTTATTTATGAGATAAACCTTAAATTAAATTTAATATTAA
1 TATTAAATTAATAGAATACTTA-TCA--AGATAAACATTAAATTAAATTTAATATTAA
32884155 GATAATCATT
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
59 20 0.41
60 2 0.04
62 27 0.55
ACGTcount: A:0.49, C:0.04, G:0.03, T:0.44
Consensus pattern (59 bp):
TATTAAATTAATAGAATACTTATCAAGATAAACATTAAATTAAATTTAATATTAAATCT
Found at i:32884611 original size:9 final size:9
Alignment explanation
Indices: 32884591--32884621 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
32884581 AAATTATCAT
32884591 ATTAATTTTA
1 ATTAA-TTTA
32884601 ATTAATTTA
1 ATTAATTTA
32884610 ATTAATTTA
1 ATTAATTTA
32884619 ATT
1 ATT
32884622 TTACTTAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 16 0.76
10 5 0.24
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (9 bp):
ATTAATTTA
Found at i:32889456 original size:22 final size:22
Alignment explanation
Indices: 32889424--32889465 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
32889414 CACTAGGGAC
32889424 TATGTGATCTGAGCTCATGAGT
1 TATGTGATCTGAGCTCATGAGT
* *
32889446 TATGTGGTCTGAGCTTATGA
1 TATGTGATCTGAGCTCATGA
32889466 TATATACGGC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.21, C:0.12, G:0.29, T:0.38
Consensus pattern (22 bp):
TATGTGATCTGAGCTCATGAGT
Found at i:32896675 original size:18 final size:17
Alignment explanation
Indices: 32896642--32896675 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
32896632 AATCTAGATA
*
32896642 TGTGGGCCATACGGGTG
1 TGTGGGCCACACGGGTG
32896659 TGTGGGCCCACACGGGT
1 TGTGGG-CCACACGGGT
32896676 AGGCCACATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.12, C:0.24, G:0.44, T:0.21
Consensus pattern (17 bp):
TGTGGGCCACACGGGTG
Found at i:32899495 original size:30 final size:31
Alignment explanation
Indices: 32899461--32899520 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 31
32899451 TAATTTTGAT
32899461 AAATTAAAATGAAATTAATA-AAATTAATTA
1 AAATTAAAATGAAATTAATAGAAATTAATTA
* * **
32899491 AAATTAATATGATATTTTTAGAAATTAATT
1 AAATTAAAATGAAATTAATAGAAATTAATT
32899521 TTCAAGTCAA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
30 16 0.64
31 9 0.36
ACGTcount: A:0.55, C:0.00, G:0.05, T:0.40
Consensus pattern (31 bp):
AAATTAAAATGAAATTAATAGAAATTAATTA
Found at i:32901189 original size:41 final size:40
Alignment explanation
Indices: 32901062--32901206 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
32901052 CTCGCACAAG
* * * * *
32901062 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
32901102 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
32901142 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
32901183 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
32901207 CATTCGAGTA
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 3 0.03
40 59 0.64
41 27 0.29
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:32903284 original size:62 final size:59
Alignment explanation
Indices: 32903127--32903327 Score: 163
Period size: 62 Copynumber: 3.2 Consensus size: 59
32903117 TTAAAAAATA
* * * * * **
32903127 ATATTAATTTAAT-AG-TTTAATATTAAATTAAATTTAATACTTATCTTAATAGTATTTT
1 ATATTAATTTAATAAGATTTAATATTAAATTTAATCTAATATTTATCTTGATA-AACATT
* * *
32903185 ATTAACTTAATATTAAAGTGAGTATCTTAATATTAAATTTAATTTAATGTTTATCTATAAGATAA
1 A-T-A-TTAAT-TT-AA-TAAG-AT-TTAATATTAAATTTAATCTAATATTTATCT-T--GATAA
32903250 ACATT
55 ACATT
* * *
32903255 CTATTATTTTAATAAGATTTAATATTAAATTTAATCTAATATTTATCTTGATAAATATT
1 ATATTAATTTAATAAGATTTAATATTAAATTTAATCTAATATTTATCTTGATAAACATT
32903314 ATATTAATTTAATA
1 ATATTAATTTAATA
32903328 TTAAAGTAAT
Statistics
Matches: 115, Mismatches: 15, Indels: 25
0.74 0.10 0.16
Matches are distributed among these distances:
58 1 0.01
59 22 0.19
60 1 0.01
61 6 0.05
62 30 0.26
63 4 0.03
64 4 0.03
65 4 0.03
66 2 0.02
67 5 0.04
68 28 0.24
69 2 0.02
70 3 0.03
71 3 0.03
ACGTcount: A:0.42, C:0.04, G:0.04, T:0.49
Consensus pattern (59 bp):
ATATTAATTTAATAAGATTTAATATTAAATTTAATCTAATATTTATCTTGATAAACATT
Found at i:32915872 original size:49 final size:48
Alignment explanation
Indices: 32915743--32915885 Score: 196
Period size: 49 Copynumber: 2.9 Consensus size: 48
32915733 TCTATTGTGA
*
32915743 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCAAAACTGT
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTA-CC-AGACTGT
* * * * * *
32915793 GATCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGACTGTT
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGACTG-T
32915842 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
32915886 TAGCTTCAGC
Statistics
Matches: 79, Mismatches: 13, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
48 5 0.06
49 41 0.52
50 33 0.42
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.27
Consensus pattern (48 bp):
GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGACTGT
Found at i:32919240 original size:27 final size:26
Alignment explanation
Indices: 32919172--32919481 Score: 284
Period size: 27 Copynumber: 11.5 Consensus size: 26
32919162 TTAGTTTACC
*
32919172 AAATTACTGAAATACCCTC-AGTTGTA
1 AAATTAC-GAAATACCCTCGATTTGTA
* * * *
32919198 AAATTACCAAAGTACCCCCGGTTTATA
1 AAATTACGAAA-TACCCTCGATTTGTA
*
32919225 AAATTATCGAAATACCGTCGA-TTGTA
1 AAATTA-CGAAATACCCTCGATTTGTA
* * *
32919251 AAATTATTGAAATACCTTAGATTTGTA
1 AAATTA-CGAAATACCCTCGATTTGTA
* *
32919278 AAATTACCGAAATACCCTCAATTTGCA
1 AAATTA-CGAAATACCCTCGATTTGTA
32919305 AAATTACTGAAATACCCTCGATTTGTA
1 AAATTAC-GAAATACCCTCGATTTGTA
* *
32919332 AAATTACTGAAATACCCTCAACTTGTA
1 AAATTAC-GAAATACCCTCGATTTGTA
* * *
32919359 AAATTACCAAAGTACCCTTGATTTATA
1 AAATTACGAAA-TACCCTCGATTTGTA
* * *
32919386 AAATTACCCAAATATCCTCGATTTGCA
1 AAATTA-CGAAATACCCTCGATTTGTA
* *
32919413 AAATTACTGAAATACCCATAG-TTTGCA
1 AAATTAC-GAAATACCC-TCGATTTGTA
*
32919440 AAATTACTAAAATACCCTCGATTTGTA
1 AAATTAC-GAAATACCCTCGATTTGTA
32919467 AAATTACTGAAATAC
1 AAATTAC-GAAATAC
32919482 TCCTGTAAGG
Statistics
Matches: 235, Mismatches: 39, Indels: 19
0.80 0.13 0.06
Matches are distributed among these distances:
25 3 0.01
26 42 0.18
27 179 0.76
28 11 0.05
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.31
Consensus pattern (26 bp):
AAATTACGAAATACCCTCGATTTGTA
Found at i:32919328 original size:54 final size:54
Alignment explanation
Indices: 32919172--32919481 Score: 324
Period size: 54 Copynumber: 5.8 Consensus size: 54
32919162 TTAGTTTACC
* * * ** * *
32919172 AAATTACTGAAATACCCTC-AGTTGTAAAATTAC-CAAAGTACCCCCGGTTTATA
1 AAATTACCGAAATACCCTCGATTTGTAAAATTACTGAAA-TACCCTAGATTTGTA
* * * *
32919225 AAATTATCGAAATACCGTCGA-TTGTAAAATTATTGAAATACCTTAGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTAAAATTACTGAAATACCCTAGATTTGTA
* * *
32919278 AAATTACCGAAATACCCTCAATTTGCAAAATTACTGAAATACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTAAAATTACTGAAATACCCTAGATTTGTA
* * * * * *
32919332 AAATTACTGAAATACCCTCAACTTGTAAAATTAC-CAAAGTACCCTTGATTTATA
1 AAATTACCGAAATACCCTCGATTTGTAAAATTACTGAAA-TACCCTAGATTTGTA
* * * *
32919386 AAATTACCCAAATATCCTCGATTTGCAAAATTACTGAAATACCCATAG-TTTGCA
1 AAATTACCGAAATACCCTCGATTTGTAAAATTACTGAAATACCC-TAGATTTGTA
**
32919440 AAATTACTAAAATACCCTCGATTTGTAAAATTACTGAAATAC
1 AAATTACCGAAATACCCTCGATTTGTAAAATTACTGAAATAC
32919482 TCCTGTAAGG
Statistics
Matches: 214, Mismatches: 37, Indels: 11
0.82 0.14 0.04
Matches are distributed among these distances:
53 58 0.27
54 151 0.71
55 5 0.02
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.31
Consensus pattern (54 bp):
AAATTACCGAAATACCCTCGATTTGTAAAATTACTGAAATACCCTAGATTTGTA
Found at i:32919499 original size:81 final size:81
Alignment explanation
Indices: 32919172--32919481 Score: 369
Period size: 81 Copynumber: 3.9 Consensus size: 81
32919162 TTAGTTTACC
* * *
32919172 AAATTACTGAAATACCCTCAG-TTGTAAAATTACCAAAGTACCCCCGGTTTATAAAATTA-TCGA
1 AAATTACTGAAATACCCTCAGTTTGTAAAATTACCAAAATACCCTCGATTTATAAAATTACT-GA
*
32919235 AATACCGTCGA-TTGTA
65 AATACCCTCGATTTGTA
* * * * **
32919251 AAATTATTGAAATA-CCTTAGATTTGTAAAATTACCGAAATACCCTCAATTTGCAAAATTACTGA
1 AAATTACTGAAATACCCTCAG-TTTGTAAAATTACCAAAATACCCTCGATTTATAAAATTACTGA
32919315 AATACCCTCGATTTGTA
65 AATACCCTCGATTTGTA
** * * **
32919332 AAATTACTGAAATACCCTCAACTTGTAAAATTACCAAAGTACCCTTGATTTATAAAATTACCCAA
1 AAATTACTGAAATACCCTCAGTTTGTAAAATTACCAAAATACCCTCGATTTATAAAATTACTGAA
* *
32919397 ATATCCTCGATTTGCA
66 ATACCCTCGATTTGTA
* * *
32919413 AAATTACTGAAATACCCAT-AGTTTGCAAAATTACTAAAATACCCTCGATTTGTAAAATTACTGA
1 AAATTACTGAAATACCC-TCAGTTTGTAAAATTACCAAAATACCCTCGATTTATAAAATTACTGA
32919477 AATAC
65 AATAC
32919482 TCCTGTAAGG
Statistics
Matches: 191, Mismatches: 34, Indels: 10
0.81 0.14 0.04
Matches are distributed among these distances:
78 5 0.03
79 13 0.07
80 43 0.23
81 125 0.65
82 5 0.03
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.31
Consensus pattern (81 bp):
AAATTACTGAAATACCCTCAGTTTGTAAAATTACCAAAATACCCTCGATTTATAAAATTACTGAA
ATACCCTCGATTTGTA
Found at i:32919523 original size:27 final size:27
Alignment explanation
Indices: 32919493--32919635 Score: 196
Period size: 27 Copynumber: 5.3 Consensus size: 27
32919483 CCTGTAAGGT
*
32919493 AGAATTATCATTTTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
* * * * *
32919520 AGAATTATCGTTTTACCCTTGACTTAT
1 AGAATTACCATTTTACCCTCGATTTAC
32919547 AGAATTACCATTTTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
* * *
32919574 AGAATTACCGTCTTACCCTCAATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
32919601 AGAATTACCATTTTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
*
32919628 AAAATTAC
1 AGAATTAC
32919636 TGAAATACCT
Statistics
Matches: 100, Mismatches: 16, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 100 1.00
ACGTcount: A:0.31, C:0.24, G:0.08, T:0.38
Consensus pattern (27 bp):
AGAATTACCATTTTACCCTCGATTTAC
Found at i:32919654 original size:54 final size:54
Alignment explanation
Indices: 32919401--32919705 Score: 199
Period size: 54 Copynumber: 5.7 Consensus size: 54
32919391 ACCCAAATAT
* * * * * * ***
32919401 CCTCGATTTGCAAAATTACTGAAATACCCATAGTTTGCAAAATTACTAAAATAC
1 CCTCGATTTACAAAATTACTGAAATACCCTTGGTTTACAGAATTACCATTTTAC
** *
32919455 CCTCGATTTGTAAAATTACTGAAATACTCCTGTAAGG--T--AGAATTATCATTTTAC
1 CCTCGATTTACAAAATTACTGAAATAC-CCT-T--GGTTTACAGAATTACCATTTTAC
* *** ** *
32919509 CCTCGATTTACAGAATTA-TCGTTTTACCCTTGACTTATAGAATTACCATTTTAC
1 CCTCGATTTACAAAATTACT-GAAATACCCTTGGTTTACAGAATTACCATTTTAC
* * *** ***
32919563 CCTCGATTTACAGAATTACCGTCTTACCCTCAATTTACAGAATTACCATTTTAC
1 CCTCGATTTACAAAATTACTGAAATACCCTTGGTTTACAGAATTACCATTTTAC
* * ***
32919617 CCTCGATTTACAAAATTACTGAAATACCTTTGGTTTACAAAATTACCAAAATAC
1 CCTCGATTTACAAAATTACTGAAATACCCTTGGTTTACAGAATTACCATTTTAC
* * **
32919671 CCTCGATTAATAAAATTACCAAAATACCC-TGGTTT
1 CCTCGATTTACAAAATTACTGAAATACCCTTGGTTT
32919706 GTAAAATTAC
Statistics
Matches: 200, Mismatches: 41, Indels: 21
0.76 0.16 0.08
Matches are distributed among these distances:
50 1 0.00
52 2 0.01
53 10 0.05
54 182 0.91
55 2 0.01
56 2 0.01
58 1 0.00
ACGTcount: A:0.35, C:0.22, G:0.09, T:0.34
Consensus pattern (54 bp):
CCTCGATTTACAAAATTACTGAAATACCCTTGGTTTACAGAATTACCATTTTAC
Found at i:32919688 original size:108 final size:108
Alignment explanation
Indices: 32919401--32919701 Score: 277
Period size: 108 Copynumber: 2.8 Consensus size: 108
32919391 ACCCAAATAT
* * * * * *
32919401 CCTCGATTTGCAAAATTACTGAAATACCCATAGTTTGCAAAATTACTAAAATACCCTCGATTTGT
1 CCTCGATTTACAAAATTACTGAAATACCCTTGGTTTACAAAATTACCAAAATACCCTCGATTTAT
* * *
32919466 AAAATTACTGAAATACTCCTGTAAGGTAGAATTATCATTTTAC
66 AAAATTACCGAAATACTCCTGCAAGGTAGAATTACCATTTTAC
* *** ** * * ***
32919509 CCTCGATTTACAGAATTA-TCGTTTTACCCTTGACTTATAGAATTACCATTTTACCCTCGATTTA
1 CCTCGATTTACAAAATTACT-GAAATACCCTTGGTTTACAAAATTACCAAAATACCCTCGATTTA
* * *** **
32919573 CAGAATTACCGTCTTAC-CCT-CAATTTACAGAATTACCATTTTAC
65 TAAAATTACCGAAATACTCCTGCAAGGT--AGAATTACCATTTTAC
* *
32919617 CCTCGATTTACAAAATTACTGAAATACCTTTGGTTTACAAAATTACCAAAATACCCTCGATTAAT
1 CCTCGATTTACAAAATTACTGAAATACCCTTGGTTTACAAAATTACCAAAATACCCTCGATTTAT
*
32919682 AAAATTACCAAAATAC-CCTG
66 AAAATTACCGAAATACTCCTG
32919702 GTTTGTAAAA
Statistics
Matches: 142, Mismatches: 46, Indels: 9
0.72 0.23 0.05
Matches are distributed among these distances:
106 3 0.02
107 4 0.03
108 134 0.94
109 1 0.01
ACGTcount: A:0.35, C:0.22, G:0.09, T:0.34
Consensus pattern (108 bp):
CCTCGATTTACAAAATTACTGAAATACCCTTGGTTTACAAAATTACCAAAATACCCTCGATTTAT
AAAATTACCGAAATACTCCTGCAAGGTAGAATTACCATTTTAC
Found at i:32919717 original size:26 final size:26
Alignment explanation
Indices: 32919172--32919752 Score: 171
Period size: 27 Copynumber: 21.7 Consensus size: 26
32919162 TTAGTTTACC
** * * *
32919172 AAATTACTGAAATACCCTCAGTTGTA
1 AAATTACCAAAATACCCTGATTTATA
* * *
32919198 AAATTACCAAAGTACCCCCGGTTTATA
1 AAATTACCAAAATA-CCCTGATTTATA
* * * *
32919225 AAATTATCGAAATACCGTCGA-TTGTA
1 AAATTACCAAAATACCCT-GATTTATA
*** * *
32919251 AAATTATTGAAATACCTTAGATTTGTA
1 AAATTACCAAAATACCCT-GATTTATA
* * **
32919278 AAATTACCGAAATACCCTCAATTTGCA
1 AAATTACCAAAATACCCT-GATTTATA
** *
32919305 AAATTACTGAAATACCCTCGATTTGTA
1 AAATTACCAAAATACCCT-GATTTATA
** * * *
32919332 AAATTACTGAAATACCCTCAACTTGTA
1 AAATTACCAAAATACCCT-GATTTATA
*
32919359 AAATTACCAAAGTACCCTTGATTTATA
1 AAATTACCAAAATACCC-TGATTTATA
* * **
32919386 AAATTACCCAAATATCCTCGATTTGCA
1 AAATTACCAAAATACCCT-GATTTATA
** **
32919413 AAATTACTGAAATACCCAT-AGTTTGCA
1 AAATTACCAAAATACCC-TGA-TTTATA
* *
32919440 AAATTACTAAAATACCCTCGATTTGTA
1 AAATTACCAAAATACCCT-GATTTATA
** *
32919467 AAATTACTGAAATACTCCTG--TAAGGTA
1 AAATTACCAAAATAC-CCTGATTTA--TA
* * *** *
32919494 GAATTATCATTTTACCCTCGATTTACA
1 AAATTACCAAAATACCCT-GATTTATA
* * **** *
32919521 GAATTATCGTTTTACCCTTGACTTATA
1 AAATTACCAAAATACCC-TGATTTATA
* *** *
32919548 GAATTACCATTTTACCCTCGATTTACA
1 AAATTACCAAAATACCCT-GATTTATA
* **** * *
32919575 GAATTACCGTCTTACCCTCAATTTACA
1 AAATTACCAAAATACCCT-GATTTATA
* *** *
32919602 GAATTACCATTTTACCCTCGATTTACA
1 AAATTACCAAAATACCCT-GATTTATA
** * * *
32919629 AAATTACTGAAATACCTTTGGTTTACA
1 AAATTACCAAAATACC-CTGATTTATA
*
32919656 AAATTACCAAAATACCCTCGATTAATA
1 AAATTACCAAAATACCCT-GATTTATA
* *
32919683 AAATTACCAAAATACCCTGGTTTGTA
1 AAATTACCAAAATACCCTGATTTATA
* * *
32919709 AAATTACCAAAATACCCCTAATTTGTG
1 AAATTACCAAAATA-CCCTGATTTATA
*
32919736 AAATTACTAAAATACCC
1 AAATTACCAAAATACCC
32919753 CTGTAGGGTA
Statistics
Matches: 444, Mismatches: 91, Indels: 40
0.77 0.16 0.07
Matches are distributed among these distances:
25 1 0.00
26 65 0.15
27 368 0.83
28 8 0.02
29 2 0.00
ACGTcount: A:0.38, C:0.21, G:0.09, T:0.33
Consensus pattern (26 bp):
AAATTACCAAAATACCCTGATTTATA
Found at i:32919767 original size:27 final size:27
Alignment explanation
Indices: 32919745--32920039 Score: 407
Period size: 27 Copynumber: 11.0 Consensus size: 27
32919735 GAAATTACTA
32919745 AAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
*
32919772 AAATACCCCTGCAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
*
32919799 AAATATCCCTGTAGGGTAGAATTACC-
1 AAATACCCCTGTAGGGTAGAATTACCG
32919825 AGAATACCCCTGTAGGGTAGAATTACC-
1 A-AATACCCCTGTAGGGTAGAATTACCG
*
32919852 AGAATACCCTTGTAGGGTAGAATTACCG
1 A-AATACCCCTGTAGGGTAGAATTACCG
32919880 AAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* *
32919907 AAATACCCTTGTAGGGTAAAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* **
32919934 AAATATCCCTGTAGGGTAGAATTATTG
1 AAATACCCCTGTAGGGTAGAATTACCG
* *
32919961 CAATACCCTTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* *
32919988 AAATACCCCTATAGGGTGGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* * * *
32920015 AGATA-CCTTGTGGGGTAAAATTACC
1 AAATACCCCTGTAGGGTAGAATTACC
32920040 ATTTTGTCCC
Statistics
Matches: 238, Mismatches: 28, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
26 16 0.07
27 221 0.93
28 1 0.00
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.25
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAGAATTACCG
Found at i:32920493 original size:22 final size:23
Alignment explanation
Indices: 32920465--32920524 Score: 65
Period size: 22 Copynumber: 2.7 Consensus size: 23
32920455 GCTTTCTGAT
*
32920465 TATGGCTTTGTGT-CAACCTT-C
1 TATGGCTCTGTGTCCAACCTTAC
32920486 ATATGGCTCTGT-TCCAACCTTAC
1 -TATGGCTCTGTGTCCAACCTTAC
*
32920509 TATGGCTGTGTG-CCAA
1 TATGGCTCTGTGTCCAA
32920525 ACGTATTTGC
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
21 1 0.03
22 31 0.94
23 1 0.03
ACGTcount: A:0.18, C:0.25, G:0.20, T:0.37
Consensus pattern (23 bp):
TATGGCTCTGTGTCCAACCTTAC
Found at i:32920719 original size:26 final size:27
Alignment explanation
Indices: 32920682--32920756 Score: 98
Period size: 27 Copynumber: 2.8 Consensus size: 27
32920672 TATTCTGTTA
* *
32920682 AGTGGCTTTGCCACATTATCTGT-TCT
1 AGTGGCTCTGCCACAATATCTGTATCT
*
32920708 GGTGGCTCTGCCACAATATCTGTATCT
1 AGTGGCTCTGCCACAATATCTGTATCT
* *
32920735 AGTGACTCTGTCACAATATCTG
1 AGTGGCTCTGCCACAATATCTG
32920757 ATAATTGAGC
Statistics
Matches: 42, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
26 20 0.48
27 22 0.52
ACGTcount: A:0.20, C:0.24, G:0.20, T:0.36
Consensus pattern (27 bp):
AGTGGCTCTGCCACAATATCTGTATCT
Found at i:32920939 original size:31 final size:31
Alignment explanation
Indices: 32920896--32921101 Score: 259
Period size: 31 Copynumber: 6.4 Consensus size: 31
32920886 CATTCACATT
32920896 CTGATTTTTGATTCTGTTACCTGATACTGATC
1 CTGA-TTTTGATTCTGTTACCTGATACTGATC
*
32920928 CTGATTTTGATTCTGTTACCTGATACTGATT
1 CTGATTTTGATTCTGTTACCTGATACTGATC
32920959 CTGATTATTGATTCTGTTACCTGATACTGATC
1 CTGATT-TTGATTCTGTTACCTGATACTGATC
32920991 CTGATTTTGATTCTGTTACCTGATACTGATAC
1 CTGATTTTGATTCTGTTACCTGATACTGAT-C
*
32921023 TGATTCTGATTTTGATTCTGTTACCTGATACTGATT
1 -----CTGATTTTGATTCTGTTACCTGATACTGATC
* * * ** *
32921059 CTGATTCTGATTCTGTCACTTGATTTTGATT
1 CTGATTTTGATTCTGTTACCTGATACTGATC
*
32921090 CTGATTCTGATT
1 CTGATTTTGATT
32921102 TTAGTTCTGA
Statistics
Matches: 159, Mismatches: 8, Indels: 15
0.87 0.04 0.08
Matches are distributed among these distances:
31 94 0.59
32 35 0.22
37 30 0.19
ACGTcount: A:0.19, C:0.17, G:0.16, T:0.48
Consensus pattern (31 bp):
CTGATTTTGATTCTGTTACCTGATACTGATC
Found at i:32920957 original size:37 final size:37
Alignment explanation
Indices: 32920916--32921070 Score: 197
Period size: 37 Copynumber: 4.5 Consensus size: 37
32920906 ATTCTGTTAC
32920916 CTGATACTGATCCTGATTTTGATTCTGTTACCTGATA
1 CTGATACTGATCCTGATTTTGATTCTGTTACCTGATA
*
32920953 CTGATTCTGAT--T-A--TTGATTCTGTTA-C-----
1 CTGATACTGATCCTGATTTTGATTCTGTTACCTGATA
32920979 CTGATACTGATCCTGATTTTGATTCTGTTACCTGATA
1 CTGATACTGATCCTGATTTTGATTCTGTTACCTGATA
*
32921016 CTGATACTGATTCTGATTTTGATTCTGTTACCTGATA
1 CTGATACTGATCCTGATTTTGATTCTGTTACCTGATA
* *
32921053 CTGATTCTGATTCTGATT
1 CTGATACTGATCCTGATT
32921071 CTGTCACTTG
Statistics
Matches: 103, Mismatches: 4, Indels: 22
0.80 0.03 0.17
Matches are distributed among these distances:
26 10 0.10
28 1 0.01
29 1 0.01
31 13 0.13
32 13 0.13
34 1 0.01
35 1 0.01
37 63 0.61
ACGTcount: A:0.21, C:0.17, G:0.16, T:0.46
Consensus pattern (37 bp):
CTGATACTGATCCTGATTTTGATTCTGTTACCTGATA
Found at i:32921070 original size:6 final size:6
Alignment explanation
Indices: 32920893--32921101 Score: 115
Period size: 6 Copynumber: 33.5 Consensus size: 6
32920883 TTGCATTCAC
* * * *
32920893 ATTCTG ATTTTTG ATTCTG -TTACCTG ATACTG ATCCTG ATTTTG ATTCTG
1 ATTCTG A-TTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * *
32920943 -TTACCTG ATACTG ATTCTG ATTATTG ATTCTG -TTACCTG ATACTG ATCCTG
1 ATT--CTG ATTCTG ATTCTG ATT-CTG ATTCTG ATT--CTG ATTCTG ATTCTG
* * * *
32920994 ATTTTG ATTCTG -TTACCTG ATACTG ATACTG ATTCTG ATTTTG ATTCTG
1 ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
32921043 -TTACCTG ATACTG ATTCTG ATTCTG ATTCTG -TCACTTG ATTTTG ATTCTG
1 ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG AT-TC-TG ATTCTG ATTCTG
32921093 ATTCTG ATT
1 ATTCTG ATT
32921102 TTAGTTCTGA
Statistics
Matches: 157, Mismatches: 26, Indels: 40
0.70 0.12 0.18
Matches are distributed among these distances:
5 11 0.07
6 113 0.72
7 27 0.17
8 6 0.04
ACGTcount: A:0.20, C:0.17, G:0.16, T:0.48
Consensus pattern (6 bp):
ATTCTG
Done.