Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 102 of 362
Found at i:32922340 original size:14 final size:14
Alignment explanation
Indices: 32922301--32922340 Score: 53
Period size: 15 Copynumber: 2.8 Consensus size: 14
32922291 GTATCGTATC
*
32922301 TTGGGTTTGTTTAT
1 TTGGGTTTCTTTAT
*
32922315 TCTGGATTTCTTTAT
1 T-TGGGTTTCTTTAT
32922330 TTGGGTTTCTT
1 TTGGGTTTCTT
32922341 GTTATCTTTA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
14 10 0.45
15 12 0.55
ACGTcount: A:0.07, C:0.07, G:0.23, T:0.62
Consensus pattern (14 bp):
TTGGGTTTCTTTAT
Found at i:32924545 original size:51 final size:50
Alignment explanation
Indices: 32924477--32924612 Score: 159
Period size: 49 Copynumber: 2.7 Consensus size: 50
32924467 TGTGAGGTCG
*
32924477 CATGTGTAGTACTAAGTGTAGGCTACTATGCGTACCCGAAAACTG-TGATCA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCC--AAACTGTTGATCA
* * * * * **
32924528 CGTGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CCAGACTGTTGGTTG
1 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCAAACTGTTGATCA
*
32924577 CATGTATAGTACTAAGTGCAGGCTACTATGCGTACC
1 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACC
32924613 AGATAGCTTT
Statistics
Matches: 71, Mismatches: 12, Indels: 5
0.81 0.14 0.06
Matches are distributed among these distances:
48 5 0.07
49 33 0.46
50 3 0.04
51 30 0.42
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.29
Consensus pattern (50 bp):
CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCAAACTGTTGATCA
Found at i:32927992 original size:27 final size:27
Alignment explanation
Indices: 32927875--32928184 Score: 288
Period size: 27 Copynumber: 11.6 Consensus size: 27
32927865 TTAGTTTACC
* *
32927875 AAATTACTAAAATACCCTC-AGTTGTA
1 AAATTACTGAAATACCCTCAATTTGTA
* * ** *
32927901 AAATTAC-CAAAGTACCCCCGGTTTATA
1 AAATTACTGAAA-TACCCTCAATTTGTA
* * *
32927928 AAATTACCGAAATACCGTCGA-TTGTA
1 AAATTACTGAAATACCCTCAATTTGTA
* *
32927954 AAATTATTGAAATA-CCTTAGATTTGTA
1 AAATTACTGAAATACCCTCA-ATTTGTA
* *
32927981 AAATTACCGAAATACCCTCAATTTGCA
1 AAATTACTGAAATACCCTCAATTTGTA
32928008 AAATTACTGAAATACCCTCAATTTGTA
1 AAATTACTGAAATACCCTCAATTTGTA
* *
32928035 AAATTACTGAAATACCCTCAACTTATA
1 AAATTACTGAAATACCCTCAATTTGTA
* ** *
32928062 AAATTAC-CAAAGTACCCTTGATTTATA
1 AAATTACTGAAA-TACCCTCAATTTGTA
** * *
32928089 AAATTACCCAAATATCCTCGATTTGTA
1 AAATTACTGAAATACCCTCAATTTGTA
* * * *
32928116 AAATTACTAAAATACCCACAGTTTGCA
1 AAATTACTGAAATACCCTCAATTTGTA
*
32928143 AAATTACTAAAATACCCTCAATTTGTA
1 AAATTACTGAAATACCCTCAATTTGTA
*
32928170 AAATTACTAAAATAC
1 AAATTACTGAAATAC
32928185 TCCTGTAAGA
Statistics
Matches: 236, Mismatches: 40, Indels: 15
0.81 0.14 0.05
Matches are distributed among these distances:
25 5 0.02
26 33 0.14
27 187 0.79
28 11 0.05
ACGTcount: A:0.42, C:0.20, G:0.08, T:0.31
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCAATTTGTA
Found at i:32928183 original size:81 final size:81
Alignment explanation
Indices: 32927875--32928176 Score: 333
Period size: 81 Copynumber: 3.8 Consensus size: 81
32927865 TTAGTTTACC
* * **
32927875 AAATTACTAAAATACCCTCAG-TTGTAAAATTACCAAAGTACCCCCGGTTTATAAAATTACCGAA
1 AAATTACTAAAATACCCTCAGTTTGTAAAATTACCAAAATACCCTCAATTTATAAAATTACCGAA
32927939 ATA-CCGTCGA-TTGTA
66 ATATCC-TCGATTTGTA
* * * * ** *
32927954 AAATTATTGAAATA-CCTTAGATTTGTAAAATTACCGAAATACCCTCAATTTGCAAAATTACTGA
1 AAATTACTAAAATACCCTCAG-TTTGTAAAATTACCAAAATACCCTCAATTTATAAAATTACCGA
* *
32928018 AATACCCTCAATTTGTA
65 AATATCCTCGATTTGTA
* ** * * ** *
32928035 AAATTACTGAAATACCCTCAACTTATAAAATTACCAAAGTACCCTTGATTTATAAAATTACCCAA
1 AAATTACTAAAATACCCTCAGTTTGTAAAATTACCAAAATACCCTCAATTTATAAAATTACCGAA
32928100 ATATCCTCGATTTGTA
66 ATATCCTCGATTTGTA
* * * *
32928116 AAATTACTAAAATACCCACAGTTTGCAAAATTACTAAAATACCCTCAATTTGTAAAATTAC
1 AAATTACTAAAATACCCTCAGTTTGTAAAATTACCAAAATACCCTCAATTTATAAAATTAC
32928177 TAAAATACTC
Statistics
Matches: 180, Mismatches: 38, Indels: 8
0.80 0.17 0.04
Matches are distributed among these distances:
78 5 0.03
79 12 0.07
80 41 0.23
81 118 0.66
82 4 0.02
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.31
Consensus pattern (81 bp):
AAATTACTAAAATACCCTCAGTTTGTAAAATTACCAAAATACCCTCAATTTATAAAATTACCGAA
ATATCCTCGATTTGTA
Found at i:32928226 original size:27 final size:27
Alignment explanation
Indices: 32928196--32928338 Score: 160
Period size: 27 Copynumber: 5.3 Consensus size: 27
32928186 CCTGTAAGAT
*
32928196 AGAATTATCATTTTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
*** * * * *
32928223 AGAATTATTGTTCTACCCTTGACTTAT
1 AGAATTACCATTTTACCCTCGATTTAC
32928250 AGAATTACCATTTTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
** *
32928277 AGAATTACTGTCTTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
* *
32928304 AGAATTGCCATTTTACCCTCAATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
*
32928331 AAAATTAC
1 AGAATTAC
32928339 TGAAATACCT
Statistics
Matches: 93, Mismatches: 23, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
27 93 1.00
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.38
Consensus pattern (27 bp):
AGAATTACCATTTTACCCTCGATTTAC
Found at i:32928347 original size:27 final size:27
Alignment explanation
Indices: 32928290--32928456 Score: 102
Period size: 27 Copynumber: 6.2 Consensus size: 27
32928280 ATTACTGTCT
* * * ***
32928290 TACCCTCGATTTACAGAATTGCCATTT
1 TACCCTCAATTTACAAAATTACCAAAA
**
32928317 TACCCTCAATTTACAAAATTACTGAAA
1 TACCCTCAATTTACAAAATTACCAAAA
* ***
32928344 TACCTTTGGTTTACAAAATTACCAAAA
1 TACCCTCAATTTACAAAATTACCAAAA
* ** *
32928371 TACCCTCGATCAATAAAATTACCAAAA
1 TACCCTCAATTTACAAAATTACCAAAA
* * **
32928398 TACCCTTAGTTTGTAAAATTACCAAAA
1 TACCCTCAATTTACAAAATTACCAAAA
*** *
32928425 TACCC-CTAATTTGTGAAATTACTAAAA
1 TACCCTC-AATTTACAAAATTACCAAAA
32928452 TACCC
1 TACCC
32928457 CTGTAGGGTA
Statistics
Matches: 109, Mismatches: 30, Indels: 2
0.77 0.21 0.01
Matches are distributed among these distances:
27 109 1.00
ACGTcount: A:0.40, C:0.23, G:0.07, T:0.31
Consensus pattern (27 bp):
TACCCTCAATTTACAAAATTACCAAAA
Found at i:32928375 original size:54 final size:54
Alignment explanation
Indices: 32927875--32928456 Score: 289
Period size: 54 Copynumber: 10.8 Consensus size: 54
32927865 TTAGTTTACC
* * * * **
32927875 AAATTACTAAAATACCCTC-AGTTGTAAAATTAC-CAAAGTACCCCCGGTTTATA
1 AAATTACCAAAATACCCTCAATTTATAAAATTACTGAAA-TACCCTTGGTTTATA
* * * * * * *
32927928 AAATTACCGAAATACCGTCGA-TTGTAAAATTATTGAAATA-CCTTAGATTTGTA
1 AAATTACCAAAATACCCTCAATTTATAAAATTACTGAAATACCCTT-GGTTTATA
* ** *** *
32927981 AAATTACCGAAATACCCTCAATTTGCAAAATTACTGAAATACCCTCAATTTGTA
1 AAATTACCAAAATACCCTCAATTTATAAAATTACTGAAATACCCTTGGTTTATA
** * * *
32928035 AAATTACTGAAATACCCTCAACTTATAAAATTAC-CAAAGTACCCTTGATTTATA
1 AAATTACCAAAATACCCTCAATTTATAAAATTACTGAAA-TACCCTTGGTTTATA
* * * * * *** **
32928089 AAATTACCCAAATATCCTCGATTTGTAAAATTACTAAAATACCCACAGTTTGCA
1 AAATTACCAAAATACCCTCAATTTATAAAATTACTGAAATACCCTTGGTTTATA
* * * **
32928143 AAATTACTAAAATACCCTCAATTTGTAAAATTACTAAAATACTCC-T-GTAAGATA
1 AAATTACCAAAATACCCTCAATTTATAAAATTACTGAAATAC-CCTTGGT-TTATA
* * *** * * * * *** **
32928197 GAATTATCATTTTACCCTCGATTTACAGAATTATTGTTCTACCCTTGACTTATA
1 AAATTACCAAAATACCCTCAATTTATAAAATTACTGAAATACCCTTGGTTTATA
* *** * * * *** * * *
32928251 GAATTACCATTTTACCCTCGATTTACAGAATTACTGTCTTACCCTCGATTTACA
1 AAATTACCAAAATACCCTCAATTTATAAAATTACTGAAATACCCTTGGTTTATA
* * *** * * *
32928305 GAATTGCCATTTTACCCTCAATTTACAAAATTACTGAAATACCTTTGGTTTACA
1 AAATTACCAAAATACCCTCAATTTATAAAATTACTGAAATACCCTTGGTTTATA
* ** ** * *
32928359 AAATTACCAAAATACCCTCGATCAATAAAATTACCAAAATACCCTTAGTTTGTA
1 AAATTACCAAAATACCCTCAATTTATAAAATTACTGAAATACCCTTGGTTTATA
* * *
32928413 AAATTACCAAAATACCC-CTAATTTGTGAAATTACTAAAATACCC
1 AAATTACCAAAATACCCTC-AATTTATAAAATTACTGAAATACCC
32928457 CTGTAGGGTA
Statistics
Matches: 416, Mismatches: 101, Indels: 23
0.77 0.19 0.04
Matches are distributed among these distances:
52 2 0.00
53 62 0.15
54 344 0.83
55 8 0.02
ACGTcount: A:0.39, C:0.21, G:0.08, T:0.32
Consensus pattern (54 bp):
AAATTACCAAAATACCCTCAATTTATAAAATTACTGAAATACCCTTGGTTTATA
Found at i:32928457 original size:27 final size:27
Alignment explanation
Indices: 32928358--32928458 Score: 114
Period size: 27 Copynumber: 3.7 Consensus size: 27
32928348 TTTGGTTTAC
* ***
32928358 AAAATTACCAAAATA-CCCTCGATCAAT
1 AAAATTACCAAAATACCCCT-AATTTGT
* *
32928385 AAAATTACCAAAATACCCTTAGTTTGT
1 AAAATTACCAAAATACCCCTAATTTGT
32928412 AAAATTACCAAAATACCCCTAATTTGT
1 AAAATTACCAAAATACCCCTAATTTGT
* *
32928439 GAAATTACTAAAATACCCCT
1 AAAATTACCAAAATACCCCT
32928459 GTAGGGTAGA
Statistics
Matches: 63, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
27 60 0.95
28 3 0.05
ACGTcount: A:0.45, C:0.23, G:0.05, T:0.28
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTAATTTGT
Found at i:32928471 original size:27 final size:27
Alignment explanation
Indices: 32928449--32928716 Score: 360
Period size: 27 Copynumber: 10.0 Consensus size: 27
32928439 GAAATTACTA
32928449 AAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
*
32928476 AAATACCCCTGCAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
32928503 AAATACCCCTGTAGGGTAGAATTACC-
1 AAATACCCCTGTAGGGTAGAATTACCG
* *
32928529 AGAATACCCTTGTAGGATAGAATTACCG
1 A-AATACCCCTGTAGGGTAGAATTACCG
* *
32928557 AAATACCCCTGTATGGTAGAATTACTG
1 AAATACCCCTGTAGGGTAGAATTACCG
* *
32928584 AAATACCCTTGTAGGGTAAAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* *
32928611 AAATATCCCTGTAGGGTAGAATTATCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* * *
32928638 CAATACCCTTGTAGGGTAGAATTATCG
1 AAATACCCCTGTAGGGTAGAATTACCG
*
32928665 AAATACCCCTGTAGGGTGGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* * * *
32928692 AGATA-CCTTGTGGGGTAAAATTACC
1 AAATACCCCTGTAGGGTAGAATTACC
32928717 ATTTTGTCCC
Statistics
Matches: 211, Mismatches: 28, Indels: 5
0.86 0.11 0.02
Matches are distributed among these distances:
26 17 0.08
27 193 0.91
28 1 0.00
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.25
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAGAATTACCG
Found at i:32928472 original size:54 final size:54
Alignment explanation
Indices: 32928387--32928690 Score: 283
Period size: 54 Copynumber: 5.6 Consensus size: 54
32928377 CGATCAATAA
* * **
32928387 AATTACCAAAATA-CCCT-TAGTTTGTAAAATTACCAAAATACCCCT-AATTTGT-G
1 AATTACCAAAATACCCCTGTAG--GGTAGAATTACCAAAATACCCCTGAA-GGGTAG
* * *
32928440 AAATTACTAAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGCAGGGTAG
1 -AATTACCAAAATACCCCTGTAGGGTAGAATTACCAAAATACCCCTGAAGGGTAG
* * * * *
32928495 AATTACCGAAATACCCCTGTAGGGTAGAATTACCAGAATACCCTTGTAGGATAG
1 AATTACCAAAATACCCCTGTAGGGTAGAATTACCAAAATACCCCTGAAGGGTAG
* * ** * * *
32928549 AATTACCGAAATACCCCTGTATGGTAGAATTACTGAAATACCCTTGTAGGGTAA
1 AATTACCAAAATACCCCTGTAGGGTAGAATTACCAAAATACCCCTGAAGGGTAG
* * * ** * *
32928603 AATTACCGAAATATCCCTGTAGGGTAGAATTATCGCAATACCCTTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAGAATTACCAAAATACCCCTGAAGGGTAG
* * *
32928657 AATTATCGAAATACCCCTGTAGGGTGGAATTACC
1 AATTACCAAAATACCCCTGTAGGGTAGAATTACC
32928691 GAGATACCTT
Statistics
Matches: 216, Mismatches: 30, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
54 207 0.96
55 6 0.03
56 3 0.01
ACGTcount: A:0.35, C:0.20, G:0.18, T:0.27
Consensus pattern (54 bp):
AATTACCAAAATACCCCTGTAGGGTAGAATTACCAAAATACCCCTGAAGGGTAG
Found at i:32929170 original size:22 final size:22
Alignment explanation
Indices: 32929137--32929201 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
32929127 TTAAAGCCTT
* * *
32929137 CTGATTATGGCTTTGTGTCAAC
1 CTGACTATGGCTCTGTGCCAAC
32929159 CT-ACATATGGCTCTGTGCCAAC
1 CTGAC-TATGGCTCTGTGCCAAC
*
32929181 CTGACTATGGCTGTGTGCCAA
1 CTGACTATGGCTCTGTGCCAA
32929202 ACGTATTTGC
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
21 1 0.03
22 34 0.92
23 2 0.05
ACGTcount: A:0.20, C:0.25, G:0.23, T:0.32
Consensus pattern (22 bp):
CTGACTATGGCTCTGTGCCAAC
Found at i:32929396 original size:26 final size:27
Alignment explanation
Indices: 32929360--32929433 Score: 105
Period size: 27 Copynumber: 2.8 Consensus size: 27
32929350 ATTCTGTTAA
* *
32929360 GTGGCTTTGCCACATTATCTGT-TCTG
1 GTGGCTCTGCCACAATATCTGTATCTG
32929386 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGTATCTG
* *
32929413 GTGACTCTGTCACAATATCTG
1 GTGGCTCTGCCACAATATCTG
32929434 ATAACTGAGC
Statistics
Matches: 43, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
26 20 0.47
27 23 0.53
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTGTATCTG
Found at i:32929616 original size:31 final size:31
Alignment explanation
Indices: 32929570--32929772 Score: 289
Period size: 31 Copynumber: 6.5 Consensus size: 31
32929560 TTGCATTCAC
32929570 ATTCTGATTTTTGATTCTGTTACCTGATACTG
1 ATTCTGA-TTTTGATTCTGTTACCTGATACTG
* *
32929602 ATCCTGATTTTGATTCTGTTACCTTATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
* *
32929633 ATTCTAATTTTTTATTCTGTTACCTGATACTG
1 ATTCTGA-TTTTGATTCTGTTACCTGATACTG
* *
32929665 ATCCTGATTTTAATTCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
32929696 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
* * * *
32929727 ATTCTGATTCTGATTCTGTCACTTGATTCTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
*
32929758 ATTCTGATTCTGATT
1 ATTCTGATTTTGATT
32929773 TTAGTTCTGA
Statistics
Matches: 155, Mismatches: 15, Indels: 3
0.90 0.09 0.02
Matches are distributed among these distances:
31 122 0.79
32 33 0.21
ACGTcount: A:0.20, C:0.17, G:0.14, T:0.49
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTGATACTG
Found at i:32929669 original size:63 final size:63
Alignment explanation
Indices: 32929570--32929766 Score: 299
Period size: 63 Copynumber: 3.1 Consensus size: 63
32929560 TTGCATTCAC
32929570 ATTCTGATTTTTGATTCTGTTACCTGATACTGATCCTGATTTTGATTCTGTTACCTTATACTG
1 ATTCTGATTTTTGATTCTGTTACCTGATACTGATCCTGATTTTGATTCTGTTACCTTATACTG
* * * *
32929633 ATTCTAATTTTTTATTCTGTTACCTGATACTGATCCTGATTTTAATTCTGTTACCTGATACTG
1 ATTCTGATTTTTGATTCTGTTACCTGATACTGATCCTGATTTTGATTCTGTTACCTTATACTG
* * * *
32929696 ATTCTGA-TTTTGATTCTGTTACCTGATACTGATTCTGATTCTGATTCTGTCA-CTTGATTCTG
1 ATTCTGATTTTTGATTCTGTTACCTGATACTGATCCTGATTTTGATTCTGTTACCTT-ATACTG
32929758 ATTCTGATT
1 ATTCTGATT
32929767 CTGATTTTAG
Statistics
Matches: 120, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
61 2 0.02
62 52 0.43
63 66 0.55
ACGTcount: A:0.20, C:0.17, G:0.14, T:0.49
Consensus pattern (63 bp):
ATTCTGATTTTTGATTCTGTTACCTGATACTGATCCTGATTTTGATTCTGTTACCTTATACTG
Found at i:32929702 original size:6 final size:6
Alignment explanation
Indices: 32929656--32929772 Score: 87
Period size: 6 Copynumber: 19.0 Consensus size: 6
32929646 ATTCTGTTAC
* * * * *
32929656 CTGATA CTGATC CTGATT TTAATT CTG-TT ACCTGATA CTGATT CTGATT
1 CTGATT CTGATT CTGATT CTGATT CTGATT --CTGATT CTGATT CTGATT
* * *
32929705 TTGATT CTG-TT ACCTGATA CTGATT CTGATT CTGATT CTG-TCA CTTGATT
1 CTGATT CTGATT --CTGATT CTGATT CTGATT CTGATT CTGAT-T C-TGATT
32929755 CTGATT CTGATT CTGATT
1 CTGATT CTGATT CTGATT
32929773 TTAGTTCTGA
Statistics
Matches: 88, Mismatches: 14, Indels: 18
0.73 0.12 0.15
Matches are distributed among these distances:
5 5 0.06
6 71 0.81
7 9 0.10
8 3 0.03
ACGTcount: A:0.20, C:0.18, G:0.15, T:0.47
Consensus pattern (6 bp):
CTGATT
Found at i:32930474 original size:15 final size:15
Alignment explanation
Indices: 32930454--32930514 Score: 56
Period size: 15 Copynumber: 4.1 Consensus size: 15
32930444 CTTGGGTTTG
32930454 TTTATTCTGGATTTC
1 TTTATTCTGGATTTC
*
32930469 TTTATTCTGGGTTT-
1 TTTATTCTGGATTTC
*
32930483 TTCTA-TCTTGGATTTA
1 TT-TATTC-TGGATTTC
*
32930499 TTTATT-TGGGTTTC
1 TTTATTCTGGATTTC
32930513 TT
1 TT
32930515 GTTATCTTTT
Statistics
Matches: 38, Mismatches: 4, Indels: 9
0.75 0.08 0.18
Matches are distributed among these distances:
14 12 0.32
15 23 0.61
16 3 0.08
ACGTcount: A:0.11, C:0.10, G:0.16, T:0.62
Consensus pattern (15 bp):
TTTATTCTGGATTTC
Found at i:32930482 original size:30 final size:29
Alignment explanation
Indices: 32930445--32930511 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 29
32930435 GTATCGTATC
*
32930445 TTGGGTTTGTT-TAT-TCTGGATTTCTTTAT
1 TTGGGTTT-TTCTATCT-TGGATTTATTTAT
32930474 TCTGGGTTTTTCTATCTTGGATTTATTTAT
1 T-TGGGTTTTTCTATCTTGGATTTATTTAT
32930504 TTGGGTTT
1 TTGGGTTT
32930512 CTTGTTATCT
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
29 10 0.29
30 23 0.68
31 1 0.03
ACGTcount: A:0.10, C:0.07, G:0.21, T:0.61
Consensus pattern (29 bp):
TTGGGTTTTTCTATCTTGGATTTATTTAT
Found at i:32932773 original size:49 final size:48
Alignment explanation
Indices: 32932647--32932791 Score: 191
Period size: 49 Copynumber: 2.9 Consensus size: 48
32932637 TCTATTGTGA
* * *
32932647 GGTCGCATGTGTAGTACTAAGTGCAAGCTACTATGCGTACCCAAAAACTGT
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTA-CC--AGATTGT
* * * *
32932698 GATCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTT
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATTG-T
32932747 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGAT
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGAT
32932792 AACTTCAGCT
Statistics
Matches: 82, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
48 4 0.05
49 42 0.51
50 2 0.02
51 34 0.41
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.28
Consensus pattern (48 bp):
GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATTGT
Found at i:32937630 original size:43 final size:44
Alignment explanation
Indices: 32937582--32937696 Score: 139
Period size: 43 Copynumber: 2.7 Consensus size: 44
32937572 ATACCGTACA
*
32937582 ATGCCAACGTCCCAGA-TGTGGTCTTACATATAATCACATATCG
1 ATGCCAACGTCCCAGACTGTGGTCTTACACATAATCACATATCG
* * * * *
32937625 ATGCC-ACTGTCCCAAACAG-GGCCTTACACGTAATCACTTATCG
1 ATGCCAAC-GTCCCAGACTGTGGTCTTACACATAATCACATATCG
32937668 ATGCCAACGTCCCAGACT-TGGTCTTACAC
1 ATGCCAACGTCCCAGACTGTGGTCTTACAC
32937697 GAGAACACGT
Statistics
Matches: 59, Mismatches: 9, Indels: 8
0.78 0.12 0.11
Matches are distributed among these distances:
42 2 0.03
43 54 0.92
44 3 0.05
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.25
Consensus pattern (44 bp):
ATGCCAACGTCCCAGACTGTGGTCTTACACATAATCACATATCG
Found at i:32953398 original size:18 final size:18
Alignment explanation
Indices: 32953372--32953409 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
32953362 TCTCATTATC
*
32953372 AATCTTCTGATCTTCGAT
1 AATCCTCTGATCTTCGAT
32953390 AATCCTCTGATCTTCGAT
1 AATCCTCTGATCTTCGAT
32953408 AA
1 AA
32953410 ACTGAACTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.26, C:0.24, G:0.11, T:0.39
Consensus pattern (18 bp):
AATCCTCTGATCTTCGAT
Found at i:32969557 original size:17 final size:17
Alignment explanation
Indices: 32969524--32969557 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
32969514 TTGAAGCAAC
32969524 AATTACAAAAACGTAAA
1 AATTACAAAAACGTAAA
32969541 AATTATCAAAAAC-TAAA
1 AATTA-CAAAAACGTAAA
32969558 CAAAACTCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.65, C:0.12, G:0.03, T:0.21
Consensus pattern (17 bp):
AATTACAAAAACGTAAA
Found at i:32971553 original size:20 final size:20
Alignment explanation
Indices: 32971530--32971572 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
32971520 ACGATATCGC
32971530 ACTTAGTGCCATCATATTAA
1 ACTTAGTGCCATCATATTAA
32971550 ACTTAGTGCCATCATATTAA
1 ACTTAGTGCCATCATATTAA
32971570 ACT
1 ACT
32971573 GAAGCTATCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (20 bp):
ACTTAGTGCCATCATATTAA
Found at i:32971650 original size:40 final size:40
Alignment explanation
Indices: 32971606--32971682 Score: 120
Period size: 40 Copynumber: 1.9 Consensus size: 40
32971596 TTAGTGCCAC
**
32971606 ATATAGCCGAAGCTAT-TCCAATTCGCACACTAAGTGCTAT
1 ATATAGCCGAAGCTATCT-CAAAACGCACACTAAGTGCTAT
32971646 ATATAGCCGAAGCTATCTCAAAACGCACACTAAGTGC
1 ATATAGCCGAAGCTATCTCAAAACGCACACTAAGTGC
32971683 CAACATAATT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
40 33 0.97
41 1 0.03
ACGTcount: A:0.35, C:0.26, G:0.16, T:0.23
Consensus pattern (40 bp):
ATATAGCCGAAGCTATCTCAAAACGCACACTAAGTGCTAT
Found at i:32980959 original size:22 final size:22
Alignment explanation
Indices: 32980934--32980975 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
32980924 AAAGAAGAAG
32980934 TTAGTCTTGGTTAAATGACTTA
1 TTAGTCTTGGTTAAATGACTTA
32980956 TTAGTCTTGGTTAAATGACT
1 TTAGTCTTGGTTAAATGACT
32980976 CAATTAGCTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.26, C:0.10, G:0.19, T:0.45
Consensus pattern (22 bp):
TTAGTCTTGGTTAAATGACTTA
Found at i:33004068 original size:20 final size:20
Alignment explanation
Indices: 33004043--33004096 Score: 99
Period size: 20 Copynumber: 2.7 Consensus size: 20
33004033 CACGAGCCTA
*
33004043 TCCCAATGCACTCGGGCGTG
1 TCCCAATGCACACGGGCGTG
33004063 TCCCAATGCACACGGGCGTG
1 TCCCAATGCACACGGGCGTG
33004083 TCCCAATGCACACG
1 TCCCAATGCACACG
33004097 AGCATGTGAG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.20, C:0.37, G:0.26, T:0.17
Consensus pattern (20 bp):
TCCCAATGCACACGGGCGTG
Found at i:33007571 original size:30 final size:30
Alignment explanation
Indices: 33007535--33007594 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
33007525 TTCCCGAGCC
*
33007535 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
* *
33007565 TAGGGGCAAAAATGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
33007595 CGTATTAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTATGCAAAAGTT
Found at i:33012113 original size:46 final size:46
Alignment explanation
Indices: 33012061--33012197 Score: 175
Period size: 46 Copynumber: 3.0 Consensus size: 46
33012051 TATATATACA
* * * * *
33012061 CATCTCATACATATCTCACATTAGCCGTTTGGCTTTACCACATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* * * *
33012107 CATCTCATACACGTTTCGCATTAGCCAATCGGCTTTATCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
33012153 TATCTCATACACATTTCGCATTAGCCATTCGGCCTTACCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
33012198 ATACATGTTC
Statistics
Matches: 76, Mismatches: 15, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 76 1.00
ACGTcount: A:0.26, C:0.31, G:0.09, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
Found at i:33012231 original size:47 final size:47
Alignment explanation
Indices: 33012171--33012306 Score: 218
Period size: 47 Copynumber: 2.9 Consensus size: 47
33012161 ACACATTTCG
* * *
33012171 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
33012218 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* *
33012265 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATT
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATT
33012307 AAAATCCTAA
Statistics
Matches: 82, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 82 1.00
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.33
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
Found at i:33019210 original size:30 final size:30
Alignment explanation
Indices: 33019164--33019223 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
33019154 TTCCCGAGCC
* *
33019164 TAGGGGTAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
* *
33019194 TAGGGGCAAAAATGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
33019224 CGTATTAAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.38, C:0.07, G:0.25, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTATGCAAAAGTT
Found at i:33027400 original size:28 final size:29
Alignment explanation
Indices: 33027368--33027481 Score: 153
Period size: 28 Copynumber: 4.0 Consensus size: 29
33027358 TACCTGTATC
* *
33027368 TGGCCCATTAAGCCC-AATCATATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
*
33027396 TGGCCCATTAGGCCCAAATCACCTT-ATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
*
33027424 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
* *
33027453 TGGCCCGTTAGGCCC-AGTCACATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
33027481 T
1 T
33027482 TCATGCTCAC
Statistics
Matches: 77, Mismatches: 7, Indels: 4
0.88 0.08 0.05
Matches are distributed among these distances:
28 53 0.69
29 24 0.31
ACGTcount: A:0.28, C:0.30, G:0.15, T:0.27
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATTCATA
Found at i:33027455 original size:57 final size:57
Alignment explanation
Indices: 33027359--33027468 Score: 159
Period size: 57 Copynumber: 1.9 Consensus size: 57
33027349 AATTTCACAT
* *
33027359 ACCTGTATCTGGCCCATTAAGCCCAATCATATTCATATGGCCCATTAGGCCCAAATC
1 ACCTGTATATGGCCCATTAAGCCCAATCACATTCATATGGCCCATTAGGCCCAAATC
* * *
33027416 ACCT-TATATGGCCCATTAGGCCCAAATCACATTTATATGGCCCGTTAGGCCCA
1 ACCTGTATATGGCCCATTAAGCCC-AATCACATTCATATGGCCCATTAGGCCCA
33027469 GTCACATTCA
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
56 17 0.36
57 30 0.64
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.26
Consensus pattern (57 bp):
ACCTGTATATGGCCCATTAAGCCCAATCACATTCATATGGCCCATTAGGCCCAAATC
Found at i:33027713 original size:8 final size:8
Alignment explanation
Indices: 33027691--33027734 Score: 56
Period size: 8 Copynumber: 5.6 Consensus size: 8
33027681 CATAGCCAAA
33027691 CTTTT-GG
1 CTTTTCGG
*
33027698 CATTTCGG
1 CTTTTCGG
33027706 CTTTTCGG
1 CTTTTCGG
33027714 CTTTTCGG
1 CTTTTCGG
33027722 -TATTTCGG
1 CT-TTTCGG
33027730 CTTTT
1 CTTTT
33027735 GTCGATACAT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
7 5 0.16
8 26 0.81
9 1 0.03
ACGTcount: A:0.05, C:0.20, G:0.23, T:0.52
Consensus pattern (8 bp):
CTTTTCGG
Found at i:33028862 original size:16 final size:16
Alignment explanation
Indices: 33028841--33028872 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
33028831 AGAAAATATG
33028841 GGATTTCGGGATTTTT
1 GGATTTCGGGATTTTT
*
33028857 GGATTTTGGGATTTTT
1 GGATTTCGGGATTTTT
33028873 AGGGCGTTAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.12, C:0.03, G:0.31, T:0.53
Consensus pattern (16 bp):
GGATTTCGGGATTTTT
Found at i:33034978 original size:28 final size:29
Alignment explanation
Indices: 33034946--33035060 Score: 139
Period size: 29 Copynumber: 4.0 Consensus size: 29
33034936 TACATGTATC
* *
33034946 TGGCCTATTAAGCCC-AATCACATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
33034974 TGGCCCATTAGGCCCAAATCATC-TGT-ATA
1 TGGCCCATTAGGCCCAAATCA-CAT-TCATA
*
33035003 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
* *
33035032 TGGCCCGTTAGGCCC-AGTCACATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
33035060 T
1 T
33035061 TCATGCTCAC
Statistics
Matches: 77, Mismatches: 5, Indels: 10
0.84 0.05 0.11
Matches are distributed among these distances:
28 27 0.35
29 48 0.62
30 2 0.03
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.28
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATTCATA
Found at i:33038937 original size:9 final size:9
Alignment explanation
Indices: 33038925--33038969 Score: 56
Period size: 9 Copynumber: 5.1 Consensus size: 9
33038915 TTAATTGTTT
33038925 TATTATTAC
1 TATTATTAC
*
33038934 TATTATTAT
1 TATTATTAC
33038943 TATTATTAC
1 TATTATTAC
* *
33038952 TCTTATTTC
1 TATTATTAC
33038961 T-TTATTAC
1 TATTATTAC
33038969 T
1 T
33038970 GTTCTATCTT
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
8 7 0.23
9 24 0.77
ACGTcount: A:0.27, C:0.11, G:0.00, T:0.62
Consensus pattern (9 bp):
TATTATTAC
Found at i:33040576 original size:6 final size:6
Alignment explanation
Indices: 33040567--33040619 Score: 79
Period size: 6 Copynumber: 8.5 Consensus size: 6
33040557 TCCCTTTCCC
*
33040567 TTTTGT TTTTAT TTTTAT TTTTAT TTTTATT TTTATAT TTTTAT TTTTAT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTA-T TTT-TAT TTTTAT TTTTAT
33040617 TTT
1 TTT
33040620 CATTATTCAT
Statistics
Matches: 44, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
6 34 0.77
7 8 0.18
8 2 0.05
ACGTcount: A:0.15, C:0.00, G:0.02, T:0.83
Consensus pattern (6 bp):
TTTTAT
Found at i:33043356 original size:85 final size:85
Alignment explanation
Indices: 33043204--33043660 Score: 753
Period size: 85 Copynumber: 5.4 Consensus size: 85
33043194 ACATATTGAT
* * *
33043204 ACATGTAACGTGGTGCTCAGTGGATATGCCAC-G--A-TTATATTGATTCATTAAAGTGGTGCTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCTA
33043265 AGTGGATATACCACGGTTAA
66 AGTGGATATACCACGGTTAA
*
33043285 ACCTGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCTA
* *
33043350 AATGGATATACCATGGTTAA
66 AGTGGATATACCACGGTTAA
33043370 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCTA
*
33043435 AGTGGATATACCACGGATAA
66 AGTGGATATACCACGGTTAA
*
33043455 ACATGTAACGTGGTGCTAATTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCTA
* **
33043520 AGTGGACATACCACAATTAA
66 AGTGGATATACCACGGTTAA
* *
33043540 ACATGTAACGCGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGAGGTGCTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCTA
33043605 CA-TGGATATACCACGGTTAA
66 -AGTGGATATACCACGGTTAA
33043625 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTT
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTT
33043661 TTACATGTTA
Statistics
Matches: 349, Mismatches: 22, Indels: 6
0.93 0.06 0.02
Matches are distributed among these distances:
81 30 0.09
82 1 0.00
84 1 0.00
85 316 0.91
86 1 0.00
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (85 bp):
ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCTA
AGTGGATATACCACGGTTAA
Found at i:33048563 original size:48 final size:48
Alignment explanation
Indices: 33048487--33048774 Score: 454
Period size: 48 Copynumber: 6.0 Consensus size: 48
33048477 CAAGATAAAT
* * *
33048487 ATATATATCTGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
33048535 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
33048583 ATA--TATATATGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
**
33048629 ATATGTATATGTGGTAAAGCCGAATGGCTAACATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
33048677 ATATATATATGTGGTAAATCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * *
33048725 ATATGTATATTTGGTAAAGCTGAATGGCTAATGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
33048773 AT
1 AT
33048775 GTGTGTATAT
Statistics
Matches: 220, Mismatches: 18, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
46 44 0.20
48 176 0.80
ACGTcount: A:0.37, C:0.07, G:0.25, T:0.32
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:33048750 original size:96 final size:96
Alignment explanation
Indices: 33048487--33048774 Score: 490
Period size: 94 Copynumber: 3.0 Consensus size: 96
33048477 CAAGATAAAT
* *
33048487 ATATATATCTGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAA
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
33048552 AGCCGAATGGCTAATATGAAATATGTATGAG
66 AGCCGAATGGCTAATATGAAATATGTATGAG
33048583 ATATATATA--TGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
*
33048646 AGCCGAATGGCTAACATGAAATATGTATGAG
66 AGCCGAATGGCTAATATGAAATATGTATGAG
* *
33048677 ATATATATATGTGGTAAATCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATTTGGTAA
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
* * *
33048742 AGCTGAATGGCTAATGTGAAATATGTAGGAG
66 AGCCGAATGGCTAATATGAAATATGTATGAG
33048773 AT
1 AT
33048775 GTGTGTATAT
Statistics
Matches: 181, Mismatches: 9, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
94 92 0.51
96 89 0.49
ACGTcount: A:0.37, C:0.07, G:0.25, T:0.32
Consensus pattern (96 bp):
ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
AGCCGAATGGCTAATATGAAATATGTATGAG
Found at i:33048965 original size:37 final size:37
Alignment explanation
Indices: 33048915--33049024 Score: 193
Period size: 37 Copynumber: 3.0 Consensus size: 37
33048905 GGAAATATAT
33048915 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
33048952 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
33048989 TCCGGGTAAGACCCGATAACTACGTGTGGGGATTAT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTAT
33049025 TCGAGCTAAA
Statistics
Matches: 69, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:33050943 original size:15 final size:15
Alignment explanation
Indices: 33050896--33050937 Score: 66
Period size: 15 Copynumber: 2.8 Consensus size: 15
33050886 GCTGTAAACG
33050896 GGATTTCCTTATCAT
1 GGATTTCCTTATCAT
* *
33050911 GGATTTCTTTATCTT
1 GGATTTCCTTATCAT
33050926 GGATTTCCTTAT
1 GGATTTCCTTAT
33050938 TCTGGACTTC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.17, C:0.17, G:0.14, T:0.52
Consensus pattern (15 bp):
GGATTTCCTTATCAT
Found at i:33053290 original size:47 final size:46
Alignment explanation
Indices: 33053177--33053417 Score: 246
Period size: 38 Copynumber: 5.5 Consensus size: 46
33053167 AAAACATGGC
* * *
33053177 GCTAAGTGGATATACCATGATTACACATATTGATACATGTAACGTGGT
1 GCTAAGTGGATATACCACGGTTACA-ATATTGATTCAT-TAACGTGGT
*
33053225 GCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGT
1 GCTAAGTGGATATACCACGGTTACA-ATATTGATTCATTAACGTGGT
*
33053272 GCTAAGTGGATATACCACGGTTA-AACA-TG--T-A--AA-GTGGT
1 GCTAAGTGGATATACCACGGTTACAATATTGATTCATTAACGTGGT
*
33053310 GCTAAGTGGATATGA-CACGGTTACATATATTGATTCATTAATGTGGT
1 GCTAAGTGGATAT-ACCACGGTTACA-ATATTGATTCATTAACGTGGT
* *
33053357 GCTAAATGGATATACCACGGTTA-AACA-TG------TAACGTGGT
1 GCTAAGTGGATATACCACGGTTACAATATTGATTCATTAACGTGGT
33053395 GCTAAGTGGATATACCACGGTTA
1 GCTAAGTGGATATACCACGGTTA
33053418 TACATGTTAA
Statistics
Matches: 170, Mismatches: 12, Indels: 32
0.79 0.06 0.15
Matches are distributed among these distances:
38 56 0.33
39 4 0.02
40 2 0.01
41 3 0.02
42 1 0.01
43 1 0.01
44 5 0.03
45 4 0.02
46 5 0.03
47 56 0.33
48 33 0.19
ACGTcount: A:0.32, C:0.14, G:0.24, T:0.31
Consensus pattern (46 bp):
GCTAAGTGGATATACCACGGTTACAATATTGATTCATTAACGTGGT
Found at i:33053356 original size:85 final size:85
Alignment explanation
Indices: 33053211--33053417 Score: 362
Period size: 85 Copynumber: 2.4 Consensus size: 85
33053201 ACATATTGAT
*
33053211 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCTA
1 ACATGTAACGTGGTGCTAAGTGGATATGACACGGTTACATATATTGATTCATTAACGTGGTGCTA
*
33053276 AGTGGATATACCACGGTTAA
66 AATGGATATACCACGGTTAA
* *
33053296 ACATGTAAAGTGGTGCTAAGTGGATATGACACGGTTACATATATTGATTCATTAATGTGGTGCTA
1 ACATGTAACGTGGTGCTAAGTGGATATGACACGGTTACATATATTGATTCATTAACGTGGTGCTA
33053361 AATGGATATACCACGGTTAA
66 AATGGATATACCACGGTTAA
33053381 ACATGTAACGTGGTGCTAAGTGGATAT-ACCACGGTTA
1 ACATGTAACGTGGTGCTAAGTGGATATGA-CACGGTTA
33053418 TACATGTTAA
Statistics
Matches: 116, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
84 1 0.01
85 115 0.99
ACGTcount: A:0.31, C:0.14, G:0.25, T:0.30
Consensus pattern (85 bp):
ACATGTAACGTGGTGCTAAGTGGATATGACACGGTTACATATATTGATTCATTAACGTGGTGCTA
AATGGATATACCACGGTTAA
Found at i:33065844 original size:40 final size:40
Alignment explanation
Indices: 33065770--33065932 Score: 276
Period size: 40 Copynumber: 4.1 Consensus size: 40
33065760 CGAGATTTAA
*
33065770 CCGGATATAGCT-ACTCGCTC-AATGCCTTCGGGACTTAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
*
33065809 CCGGATATAGTAACTCGCACCAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
33065849 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
33065889 CCGGATATAGTAGCTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
33065929 CCGG
1 CCGG
33065933 TTATCATCCA
Statistics
Matches: 119, Mismatches: 3, Indels: 3
0.95 0.02 0.02
Matches are distributed among these distances:
38 1 0.01
39 17 0.14
40 101 0.85
ACGTcount: A:0.24, C:0.29, G:0.24, T:0.23
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:33073567 original size:40 final size:40
Alignment explanation
Indices: 33073474--33073690 Score: 280
Period size: 40 Copynumber: 5.5 Consensus size: 40
33073464 AAGCCAAGTA
* * *
33073474 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
33073512 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
33073552 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
33073592 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
33073632 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
** *
33073672 CCTTCAAGAATTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
33073691 TTATCATCCA
Statistics
Matches: 161, Mismatches: 14, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
38 12 0.07
39 18 0.11
40 131 0.81
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:33078775 original size:28 final size:28
Alignment explanation
Indices: 33078735--33078799 Score: 121
Period size: 28 Copynumber: 2.3 Consensus size: 28
33078725 ATGTACTATT
*
33078735 ATACCCCTATGTATGCAAAATTAGCATA
1 ATACCCCTATGTATGCAAAATTACCATA
33078763 ATACCCCTATGTATGCAAAATTACCATA
1 ATACCCCTATGTATGCAAAATTACCATA
33078791 ATACCCCTA
1 ATACCCCTA
33078800 GGGTTAATTT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 36 1.00
ACGTcount: A:0.38, C:0.26, G:0.08, T:0.28
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATTACCATA
Found at i:33078964 original size:27 final size:27
Alignment explanation
Indices: 33078916--33078995 Score: 106
Period size: 27 Copynumber: 2.9 Consensus size: 27
33078906 CTGGTAGCTA
*
33078916 TGCCACAAATTATCTGTTCTGGTGGCCC
1 TGCCACAAA-TATCTGTTCTGGTGGCAC
*
33078944 TGCCACATATATCTGTTCTGGTGGCAC
1 TGCCACAAATATCTGTTCTGGTGGCAC
*
33078971 TGCCACAAAATATCTATATCTGGTG
1 TGCCAC-AAATATCTGT-TCTGGTG
33078996 ACTCTGTCAC
Statistics
Matches: 46, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
27 23 0.50
28 16 0.35
29 7 0.15
ACGTcount: A:0.23, C:0.25, G:0.20, T:0.33
Consensus pattern (27 bp):
TGCCACAAATATCTGTTCTGGTGGCAC
Found at i:33079006 original size:29 final size:28
Alignment explanation
Indices: 33078916--33079006 Score: 85
Period size: 27 Copynumber: 3.2 Consensus size: 28
33078906 CTGGTAGCTA
* * * *
33078916 TGCCACAAATTATCTGTTCTGGTGGCCC
1 TGCCACAAAATATCTATTCTGGTGACAC
* * *
33078944 TGCCAC-ATATATCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTATTCTGGTGACAC
*
33078971 TGCCACAAAATATCTATATCTGGTGACTC
1 TGCCACAAAATATCTAT-TCTGGTGACAC
*
33079000 TGTCACA
1 TGCCACA
33079007 TTTTCTGTAT
Statistics
Matches: 53, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
27 24 0.45
28 14 0.26
29 15 0.28
ACGTcount: A:0.23, C:0.26, G:0.19, T:0.32
Consensus pattern (28 bp):
TGCCACAAAATATCTATTCTGGTGACAC
Found at i:33079014 original size:55 final size:56
Alignment explanation
Indices: 33078916--33079020 Score: 133
Period size: 55 Copynumber: 1.9 Consensus size: 56
33078906 CTGGTAGCTA
* * *
33078916 TGCCACAAATTATCTGTTCTGGTGGCCCTGCCACATATATCTGT-TCTGGTGGCAC
1 TGCCACAAAATATCTATTCTGGTGACCCTGCCACATATATCTGTATCTGGTGGCAC
* * *
33078971 TGCCACAAAATATCTATATCTGGTGACTCTGTCACAT-TTTCTGTATCTGG
1 TGCCACAAAATATCTAT-TCTGGTGACCCTGCCACATATATCTGTATCTGG
33079021 CAGCCATGCT
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
55 21 0.50
56 21 0.50
ACGTcount: A:0.21, C:0.25, G:0.19, T:0.35
Consensus pattern (56 bp):
TGCCACAAAATATCTATTCTGGTGACCCTGCCACATATATCTGTATCTGGTGGCAC
Found at i:33085466 original size:15 final size:14
Alignment explanation
Indices: 33085446--33085476 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
33085436 TTTCTGACCA
33085446 TTCTTTTCTCTTTCT
1 TTCTTTTCT-TTTCT
33085461 TTCTTTTCTTTTCT
1 TTCTTTTCTTTTCT
33085475 TT
1 TT
33085477 TTCTCTCCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.44
15 9 0.56
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (14 bp):
TTCTTTTCTTTTCT
Found at i:33086287 original size:16 final size:15
Alignment explanation
Indices: 33086262--33086292 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
33086252 CTAGATCGGC
33086262 AAAAGCCGAAAAGCG
1 AAAAGCCGAAAAGCG
33086277 AAAATGCCGAAAAGCG
1 AAAA-GCCGAAAAGCG
33086293 TATTTTGGGC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.27
16 11 0.73
ACGTcount: A:0.52, C:0.19, G:0.26, T:0.03
Consensus pattern (15 bp):
AAAAGCCGAAAAGCG
Found at i:33086764 original size:27 final size:27
Alignment explanation
Indices: 33086706--33086795 Score: 119
Period size: 28 Copynumber: 3.2 Consensus size: 27
33086696 AGGAAGCGTC
33086706 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* *
33086734 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
33086761 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
33086790 CTGGTG
1 CTGGTG
33086796 ACTCTGTCAC
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 23 0.42
28 25 0.45
29 7 0.13
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:33086814 original size:55 final size:56
Alignment explanation
Indices: 33086706--33086820 Score: 146
Period size: 55 Copynumber: 2.1 Consensus size: 56
33086696 AGGAAGCGTC
* *
33086706 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACATATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
* * *
33086761 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACATATATCTGTAT
33086817 CTGG
1 CTGG
33086821 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
54 1 0.02
55 30 0.58
56 21 0.40
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:33089352 original size:25 final size:25
Alignment explanation
Indices: 33089321--33089381 Score: 70
Period size: 25 Copynumber: 2.4 Consensus size: 25
33089311 CCTCGACTTG
33089321 TAAAATTACCAAAGTACCCCCG-TTA
1 TAAAATTACCAAA-TACCCCCGATTA
* *
33089346 TAAAATTATCCAAATATCCTCGATTTA
1 TAAAATTA-CCAAATACCCCCGA-TTA
33089373 TAAAATTAC
1 TAAAATTAC
33089382 TGAAATAAGA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
25 14 0.45
26 6 0.19
27 11 0.35
ACGTcount: A:0.43, C:0.21, G:0.05, T:0.31
Consensus pattern (25 bp):
TAAAATTACCAAATACCCCCGATTA
Found at i:33089387 original size:27 final size:25
Alignment explanation
Indices: 33089296--33089388 Score: 66
Period size: 27 Copynumber: 3.6 Consensus size: 25
33089286 TTAGTTTACC
* *
33089296 AAATTACTGAAGATACCTCGACTTGTA
1 AAATTACTCAA-ATACCTCGA-TTATA
*
33089323 AAATTAC-CAAAGTACCCCCG-TTATA
1 AAATTACTCAAA-TA-CCTCGATTATA
33089348 AAATTA-TCCAAATATCCTCGATTTATA
1 AAATTACT-CAAATA-CCTCGA-TTATA
*
33089375 AAATTACTGAAATA
1 AAATTACTCAAATA
33089389 AGATAGAAAT
Statistics
Matches: 53, Mismatches: 6, Indels: 14
0.73 0.08 0.19
Matches are distributed among these distances:
25 17 0.32
26 8 0.15
27 27 0.51
28 1 0.02
ACGTcount: A:0.42, C:0.19, G:0.09, T:0.30
Consensus pattern (25 bp):
AAATTACTCAAATACCTCGATTATA
Found at i:33089449 original size:27 final size:28
Alignment explanation
Indices: 33089395--33089456 Score: 99
Period size: 27 Copynumber: 2.2 Consensus size: 28
33089385 AATAAGATAG
*
33089395 AAATTACCATTTTACACCTCGATTTACA
1 AAATTACCATTTTACACCTCAATTTACA
*
33089423 GAATTACCATTTTAC-CCTCAATTTACA
1 AAATTACCATTTTACACCTCAATTTACA
33089450 AAATTAC
1 AAATTAC
33089457 TAAATACCAT
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
27 17 0.55
28 14 0.45
ACGTcount: A:0.37, C:0.24, G:0.03, T:0.35
Consensus pattern (28 bp):
AAATTACCATTTTACACCTCAATTTACA
Found at i:33089473 original size:26 final size:26
Alignment explanation
Indices: 33089444--33089636 Score: 109
Period size: 28 Copynumber: 7.1 Consensus size: 26
33089434 TTACCCTCAA
*
33089444 TTTACAAAATTACTAAATACCATTGG
1 TTTACAAAATTACTAAATACCCTTGG
* * *
33089470 TTTACAAAATTACCAAATACCCTCGA
1 TTTACAAAATTACTAAATACCCTTGG
* **
33089496 TTAATA-AAAATTACAAAATACCCTTAC
1 TT--TACAAAATTACTAAATACCCTTGG
**
33089523 TTTGTAAAATTACTAAAATACCCTTGG
1 TTTACAAAATTACT-AAATACCCTTGG
* * * *
33089550 TTTTATAAAATCACCAAAAATACCCCTGG
1 -TTTACAAAATTA-C-TAAATACCCTTGG
** * *
33089579 TTTGTAAAATTACCAAAATACCCATGG
1 TTTACAAAATTA-CTAAATACCCTTGG
* * * *
33089606 CTTATTAAAATTACCAAAATACCCCTGG
1 TTTA-CAAAATTA-CTAAATACCCTTGG
33089634 TTT
1 TTT
33089637 GATAAATTAC
Statistics
Matches: 136, Mismatches: 23, Indels: 14
0.79 0.13 0.08
Matches are distributed among these distances:
25 1 0.01
26 32 0.24
27 43 0.32
28 48 0.35
29 12 0.09
ACGTcount: A:0.41, C:0.20, G:0.07, T:0.32
Consensus pattern (26 bp):
TTTACAAAATTACTAAATACCCTTGG
Found at i:33089530 original size:27 final size:28
Alignment explanation
Indices: 33089502--33089709 Score: 168
Period size: 28 Copynumber: 7.7 Consensus size: 28
33089492 TCGATTAATA
**
33089502 AAAATTA-C-AAAATACCCTTACTTTGT
1 AAAATTACCAAAAATACCCTTGGTTTGT
* *
33089528 AAAATTA-CTAAAATACCCTTGGTTTTAT
1 AAAATTACCAAAAATACCCTTGG-TTTGT
* *
33089556 AAAATCACCAAAAATACCCCTGGTTTGT
1 AAAATTACCAAAAATACCCTTGGTTTGT
*
33089584 AAAATTACC-AAAATACCCATGGCTTAT-T
1 AAAATTACCAAAAATACCCTTGG-TT-TGT
*
33089612 AAAATTACC-AAAATACCCCTGGTTTG-
1 AAAATTACCAAAAATACCCTTGGTTTGT
* * **
33089638 ATAAATTACAAAAAATATCCTTGG-TTAC
1 A-AAATTACCAAAAATACCCTTGGTTTGT
* * *
33089666 AAAACTACC-AAAA-ACCCCTAGTTTGT
1 AAAATTACCAAAAATACCCTTGGTTTGT
33089692 AAAATTACC-AAAATACCC
1 AAAATTACCAAAAATACCC
33089710 CAATTTGTGA
Statistics
Matches: 149, Mismatches: 22, Indels: 21
0.78 0.11 0.11
Matches are distributed among these distances:
25 5 0.03
26 28 0.19
27 44 0.30
28 58 0.39
29 14 0.09
ACGTcount: A:0.43, C:0.21, G:0.07, T:0.29
Consensus pattern (28 bp):
AAAATTACCAAAAATACCCTTGGTTTGT
Found at i:33089568 original size:28 final size:27
Alignment explanation
Indices: 33089444--33089709 Score: 220
Period size: 27 Copynumber: 9.9 Consensus size: 27
33089434 TTACCCTCAA
* * *
33089444 TTTACAAAATTA-CTAAATACCATTGG
1 TTTATAAAATTACCAAAATACCCTTGG
* * *
33089470 TTTACAAAATTACC-AAATACCCTCGA
1 TTTATAAAATTACCAAAATACCCTTGG
* **
33089496 TTAATAAAAATTA-CAAAATACCCTTAC
1 TTTAT-AAAATTACCAAAATACCCTTGG
* *
33089523 TTTGTAAAATTACTAAAATACCCTTGG
1 TTTATAAAATTACCAAAATACCCTTGG
* *
33089550 TTTTATAAAATCACCAAAAATACCCCTGG
1 -TTTATAAAATTACC-AAAATACCCTTGG
* *
33089579 TTTGTAAAATTACCAAAATACCCATGG
1 TTTATAAAATTACCAAAATACCCTTGG
* *
33089606 CTTATTAAAATTACCAAAATACCCCTGG
1 TTTA-TAAAATTACCAAAATACCCTTGG
* *
33089634 TTTGAT-AAATTACAAAAAATATCCTTGG
1 TTT-ATAAAATTAC-CAAAATACCCTTGG
* * * *
33089662 -TTACAAAACTACCAAAA-ACCCCTAG
1 TTTATAAAATTACCAAAATACCCTTGG
*
33089687 TTTGTAAAATTACCAAAATACCC
1 TTTATAAAATTACCAAAATACCC
33089710 CAATTTGTGA
Statistics
Matches: 192, Mismatches: 36, Indels: 23
0.76 0.14 0.09
Matches are distributed among these distances:
25 5 0.03
26 51 0.27
27 64 0.33
28 59 0.31
29 13 0.07
ACGTcount: A:0.43, C:0.21, G:0.07, T:0.30
Consensus pattern (27 bp):
TTTATAAAATTACCAAAATACCCTTGG
Found at i:33089583 original size:56 final size:53
Alignment explanation
Indices: 33089475--33089709 Score: 228
Period size: 56 Copynumber: 4.3 Consensus size: 53
33089465 ATTGGTTTAC
* * * * **
33089475 AAAATTACC-AAATACCCTCGATTAATAAAAATTA-CAAAATACCCTTACTTTGT
1 AAAATTACCAAAATACCCTTGGTT-AT-AAAATCACCAAAATACCCCTGGTTTGT
*
33089528 AAAATTACTAAAATACCCTTGGTTTTATAAAATCACCAAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCTTGG--TTATAAAATCACC-AAAATACCCCTGGTTTGT
* *
33089584 AAAATTACCAAAATACCCATGGCTTATTAAAATTACCAAAATACCCCTGGTTTG-
1 AAAATTACCAAAATACCCTTGG-TTA-TAAAATCACCAAAATACCCCTGGTTTGT
* * * *
33089638 ATAAATTACAAAAAATATCCTTGGTTACAAAA-CTACCAAAA-ACCCCTAGTTTGT
1 A-AAATTAC-CAAAATACCCTTGGTTATAAAATC-ACCAAAATACCCCTGGTTTGT
33089692 AAAATTACCAAAATACCC
1 AAAATTACCAAAATACCC
33089710 CAATTTGTGA
Statistics
Matches: 153, Mismatches: 19, Indels: 21
0.79 0.10 0.11
Matches are distributed among these distances:
52 8 0.05
53 26 0.17
54 29 0.19
55 33 0.22
56 57 0.37
ACGTcount: A:0.43, C:0.21, G:0.07, T:0.29
Consensus pattern (53 bp):
AAAATTACCAAAATACCCTTGGTTATAAAATCACCAAAATACCCCTGGTTTGT
Found at i:33089833 original size:26 final size:27
Alignment explanation
Indices: 33089720--33089877 Score: 212
Period size: 27 Copynumber: 5.9 Consensus size: 27
33089710 CAATTTGTGA
* *
33089720 AATTACCGAAATACCCTTGTAGGTGTAG
1 AATTACCGGAATACCCCTGTAGG-GTAG
* *
33089748 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGGAATACCCCTGTAGGGTAG
33089775 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGGAATACCCCTGTAGGGTAG
* *
33089802 AATTACCGGAATACACCTATA-GGTAG
1 AATTACCGGAATACCCCTGTAGGGTAG
* *
33089828 AATTACCGGATTACCCCTGTA-GGTTG
1 AATTACCGGAATACCCCTGTAGGGTAG
*
33089854 AATTACCGGAATACCCTTGTAGGG
1 AATTACCGGAATACCCCTGTAGGG
33089878 AGTCATAATA
Statistics
Matches: 117, Mismatches: 12, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
26 46 0.39
27 50 0.43
28 21 0.18
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.26
Consensus pattern (27 bp):
AATTACCGGAATACCCCTGTAGGGTAG
Found at i:33089837 original size:53 final size:54
Alignment explanation
Indices: 33089720--33089867 Score: 201
Period size: 53 Copynumber: 2.8 Consensus size: 54
33089710 CAATTTGTGA
* * * * * *
33089720 AATTACCGAAATACCCTTGTAGGTGTAGAATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGGAATACCCCTGTAGG-GTAGAATTACCGGAATACACCTATAGGGTAG
33089775 AATTACCGGAATACCCCTGTAGGGTAGAATTACCGGAATACACCTATA-GGTAG
1 AATTACCGGAATACCCCTGTAGGGTAGAATTACCGGAATACACCTATAGGGTAG
* *
33089828 AATTACCGGATTACCCCTGTA-GGTTGAATTACCGGAATAC
1 AATTACCGGAATACCCCTGTAGGGTAGAATTACCGGAATAC
33089868 CCTTGTAGGG
Statistics
Matches: 85, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
52 18 0.21
53 25 0.29
54 21 0.25
55 21 0.25
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.26
Consensus pattern (54 bp):
AATTACCGGAATACCCCTGTAGGGTAGAATTACCGGAATACACCTATAGGGTAG
Found at i:33090475 original size:28 final size:28
Alignment explanation
Indices: 33090435--33090499 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
33090425 AGATGTACTA
*
33090435 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
*
33090463 ATACCCCTATGTATGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
33090491 ATACCCCTA
1 ATACCCCTA
33090500 GGGTTAATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.34, C:0.28, G:0.08, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:33090663 original size:27 final size:27
Alignment explanation
Indices: 33090605--33090694 Score: 119
Period size: 28 Copynumber: 3.2 Consensus size: 27
33090595 AGGAAGCGTC
33090605 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* *
33090633 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
33090660 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
33090689 CTGGTG
1 CTGGTG
33090695 ACTCTGTCAC
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 23 0.42
28 25 0.45
29 7 0.13
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:33090713 original size:55 final size:56
Alignment explanation
Indices: 33090605--33090719 Score: 146
Period size: 55 Copynumber: 2.1 Consensus size: 56
33090595 AGGAAGCGTC
* *
33090605 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACATATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
* * *
33090660 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACATATATCTGTAT
33090716 CTGG
1 CTGG
33090720 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
54 1 0.02
55 30 0.58
56 21 0.40
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:33098004 original size:8 final size:8
Alignment explanation
Indices: 33097991--33098021 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
33097981 CTAGATCGGC
33097991 AAAAGCCG
1 AAAAGCCG
33097999 AAAAGCCG
1 AAAAGCCG
*
33098007 AAATGCCG
1 AAAAGCCG
33098015 AAAAGCC
1 AAAAGCC
33098022 AGTATTTAGG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.48, C:0.26, G:0.23, T:0.03
Consensus pattern (8 bp):
AAAAGCCG
Found at i:33098309 original size:28 final size:28
Alignment explanation
Indices: 33098269--33098333 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
33098259 ATGTACTATT
*
33098269 ATACCCCTATGTATGCAAAATTACCGTA
1 ATACCCCTATGTATGCAAAATGACCGTA
* *
33098297 ATACCCCTATGTATGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCGTA
33098325 ATACCCCTA
1 ATACCCCTA
33098334 GGGTTAATTT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.34, C:0.28, G:0.09, T:0.29
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCGTA
Found at i:33098498 original size:27 final size:27
Alignment explanation
Indices: 33098440--33098529 Score: 119
Period size: 28 Copynumber: 3.2 Consensus size: 27
33098430 AGGAAGCGTC
33098440 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* *
33098468 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
33098495 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
33098524 CTGGTG
1 CTGGTG
33098530 ACTCTGTCAC
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 23 0.42
28 25 0.45
29 7 0.13
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:33098548 original size:55 final size:56
Alignment explanation
Indices: 33098440--33098554 Score: 146
Period size: 55 Copynumber: 2.1 Consensus size: 56
33098430 AGGAAGCGTC
* *
33098440 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACATATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
* * *
33098495 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACATATATCTGTAT
33098551 CTGG
1 CTGG
33098555 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
54 1 0.02
55 30 0.58
56 21 0.40
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:33100646 original size:49 final size:50
Alignment explanation
Indices: 33100593--33100725 Score: 187
Period size: 50 Copynumber: 2.7 Consensus size: 50
33100583 CCGGTACGCA
* ** * *
33100593 TAGTAGCTTGCACTTAGTACTACACATGCGACC-AATTATCTGGTACATG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCTAACCATCTGATACACG
* *
33100642 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCTAACCATCTGATACACG
*
33100692 TAGTAGCCTGCACTTAGTACTACACATTCGACCT
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCT
33100726 CACAATAGAT
Statistics
Matches: 73, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
49 30 0.41
50 43 0.59
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.28
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCTAACCATCTGATACACG
Found at i:33106969 original size:26 final size:26
Alignment explanation
Indices: 33106940--33106991 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
33106930 CAAGAGTGTG
*
33106940 TTTCTACCGAAGCTATAATGTGTAAA
1 TTTCTACCAAAGCTATAATGTGTAAA
*
33106966 TTTCTACCAAAGTTATAATGTGTAAA
1 TTTCTACCAAAGCTATAATGTGTAAA
33106992 AGGTTAGAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.37, C:0.13, G:0.13, T:0.37
Consensus pattern (26 bp):
TTTCTACCAAAGCTATAATGTGTAAA
Found at i:33112490 original size:40 final size:40
Alignment explanation
Indices: 33112417--33112497 Score: 103
Period size: 40 Copynumber: 2.0 Consensus size: 40
33112407 AATTTATAAT
33112417 TAAAAATAAAAATCTAAAATCTAATAAAAAAATAGTTTTAA
1 TAAAAATAAAAATCTAAAA-CTAATAAAAAAATAGTTTTAA
* *
33112458 TAAAAATTAAAAA-CATAAAA-TAATAAATAAATATTTTTAA
1 TAAAAA-TAAAAATC-TAAAACTAATAAAAAAATAGTTTTAA
33112498 ACATCTTCAT
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
40 18 0.50
41 7 0.19
42 11 0.31
ACGTcount: A:0.64, C:0.04, G:0.01, T:0.31
Consensus pattern (40 bp):
TAAAAATAAAAATCTAAAACTAATAAAAAAATAGTTTTAA
Found at i:33129520 original size:43 final size:43
Alignment explanation
Indices: 33129439--33129558 Score: 143
Period size: 43 Copynumber: 2.8 Consensus size: 43
33129429 TCTGAACTCA
* * ** * *
33129439 TTCACCGGCA-TATCGCCTTCTAGGCTTGAAACCTGATATCAT
1 TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATATCAT
*
33129481 TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATATTAT
1 TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATATCAT
* * *
33129524 CTCACCGGCATTATAGCCTGCTAGGGCCAAAGCCC
1 TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCC
33129559 AATAATATTA
Statistics
Matches: 67, Mismatches: 10, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
42 10 0.15
43 57 0.85
ACGTcount: A:0.23, C:0.32, G:0.20, T:0.25
Consensus pattern (43 bp):
TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATATCAT
Found at i:33139203 original size:42 final size:42
Alignment explanation
Indices: 33139156--33139264 Score: 130
Period size: 43 Copynumber: 2.6 Consensus size: 42
33139146 GATTACGTGT
* * *
33139156 AAGACCATATTTGGGATATGGCATCAATATGAGACT-CAATGG
1 AAGACCATATCTGGGATATGGCATCAATACGAGAATAC-ATGG
* * *
33139198 AAGACCATAGCTGGGCTATTGGCATCAATACGAGAATACATGT
1 AAGACCATATCTGGGATA-TGGCATCAATACGAGAATACATGG
*
33139241 AAGACCATATCTAGGATATGGCAT
1 AAGACCATATCTGGGATATGGCAT
33139265 TGGTACGGTA
Statistics
Matches: 56, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
42 21 0.38
43 34 0.61
44 1 0.02
ACGTcount: A:0.36, C:0.17, G:0.23, T:0.25
Consensus pattern (42 bp):
AAGACCATATCTGGGATATGGCATCAATACGAGAATACATGG
Found at i:33143457 original size:15 final size:15
Alignment explanation
Indices: 33143425--33143453 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
33143415 ACTTTCTGTG
33143425 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
33143440 TTTA-TATGTGTGAA
1 TTTATTATGTGTGAA
33143454 ATTTTCATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.52
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:33144620 original size:43 final size:41
Alignment explanation
Indices: 33144572--33144729 Score: 133
Period size: 43 Copynumber: 3.8 Consensus size: 41
33144562 AGGATTTTCG
* *
33144572 ATATGTGTTCTCGAGTAAGACCACATCTGGGACATTGGCATC
1 ATATGTGTT-TCGTGTAAGACCACGTCTGGGACATTGGCATC
* * * *
33144614 AATATGTGATTACGTGTACGACCATGTCTGGGACATCGGCATC
1 -ATATGTG-TTTCGTGTAAGACCACGTCTGGGACATTGGCATC
* * *
33144657 ATATTTGATTCGTGTAA-ACC-CTGTCTGGGACAGTGGCATC
1 ATATGTGTTTCGTGTAAGACCAC-GTCTGGGACATTGGCATC
* *
33144697 GATATGTGATTGT-ATGTAAGACCATGTCTGGGA
1 -ATATGTG-TT-TCGTGTAAGACCACGTCTGGGA
33144730 TGTTAGCATT
Statistics
Matches: 91, Mismatches: 17, Indels: 14
0.75 0.14 0.11
Matches are distributed among these distances:
40 19 0.21
41 13 0.14
42 12 0.13
43 45 0.49
44 2 0.02
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.30
Consensus pattern (41 bp):
ATATGTGTTTCGTGTAAGACCACGTCTGGGACATTGGCATC
Found at i:33144695 original size:40 final size:40
Alignment explanation
Indices: 33144597--33144729 Score: 144
Period size: 43 Copynumber: 3.2 Consensus size: 40
33144587 TAAGACCACA
*
33144597 TCTGGGACATTGGCATCAATATGTGATTACGTGTACGACCATG
1 TCTGGGACA-TGGCATCAATATGTGATT-CGTGTA-AACCATG
* *
33144640 TCTGGGACATCGGCATC-ATATTTGATTCGTGTAAACCCTG
1 TCTGGGACAT-GGCATCAATATGTGATTCGTGTAAACCATG
*
33144680 TCTGGGACAGTGGCATCGATATGTGATT-GTATGTAAGACCATG
1 TCTGGGACA-TGGCATCAATATGTGATTCG--TGTAA-ACCATG
33144723 TCTGGGA
1 TCTGGGA
33144730 TGTTAGCATT
Statistics
Matches: 79, Mismatches: 5, Indels: 12
0.82 0.05 0.12
Matches are distributed among these distances:
40 21 0.27
41 16 0.20
42 15 0.19
43 27 0.34
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (40 bp):
TCTGGGACATGGCATCAATATGTGATTCGTGTAAACCATG
Found at i:33147130 original size:70 final size:69
Alignment explanation
Indices: 33147018--33147150 Score: 239
Period size: 70 Copynumber: 1.9 Consensus size: 69
33147008 TTTGTATGTT
*
33147018 TGATTTAGGCTTAATAAATGTAGTGAATATGTTAGATAAAGACATTGAGTTGATATGTTTTAATA
1 TGATTTAGGCTTAATAAATGTAGTGAATATGTTAGATAAAGACATTGAGTTGATATGTCTTAATA
33147083 GTGA
66 GTGA
*
33147087 TGATTTAGGGCTTAATAAATGTATTGAATATGTTAGATAAAGACATTGAGTTGATATGTCTTAA
1 TGATTTA-GGCTTAATAAATGTAGTGAATATGTTAGATAAAGACATTGAGTTGATATGTCTTAA
33147151 CCGTGAATGT
Statistics
Matches: 61, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
69 7 0.11
70 54 0.89
ACGTcount: A:0.36, C:0.04, G:0.21, T:0.39
Consensus pattern (69 bp):
TGATTTAGGCTTAATAAATGTAGTGAATATGTTAGATAAAGACATTGAGTTGATATGTCTTAATA
GTGA
Found at i:33150862 original size:93 final size:93
Alignment explanation
Indices: 33150750--33150920 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
33150740 GCCCATAAGT
*
33150750 GAACTCGGACTCAACTCAACGAGCTCTGG-CGTTCGCATCCATAAGTGAAATCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAAATCGGACTCAACTCA
33150814 ACGAGCTCGGATGCCTAGTTACATCTCTC
65 ACGAGCTCGGATGCCTAGTTACATCTCTC
* *
33150843 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAAATCGGACTCAACTCAA
*
33150908 CGAGTTCGGATGC
66 CGAGCTCGGATGC
33150921 TCAACCATCC
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAAATCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:33150917 original size:46 final size:45
Alignment explanation
Indices: 33150742--33150916 Score: 201
Period size: 46 Copynumber: 3.8 Consensus size: 45
33150732 TGTAACCCGC
*
33150742 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCTGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GGCATTCGCAT
* *
33150788 CCATAAGTGAAATCGGACTCAACTCAACGAGCTCGG-ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGC-A--T
* *** *
33150834 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGG-CATTCGCAT
*
33150881 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
33150917 ATGCTCAACC
Statistics
Matches: 108, Mismatches: 14, Indels: 14
0.79 0.10 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 66 0.61
47 31 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGCAT
Found at i:33154275 original size:53 final size:53
Alignment explanation
Indices: 33154079--33154331 Score: 225
Period size: 55 Copynumber: 4.8 Consensus size: 53
33154069 ATTAGGGTTT
* *
33154079 AAGGATACCATGTAAGACCATGCCAAGGCATGACAATTGGTAAGGTTTC-TAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGC-ATTGGTAA-G-TTCATAAGGC
* * *
33154134 AAGGATATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT-C-ATAAGGC
** *
33154189 AAAGG-T-CTCATGTAAGACCATGCCAAGGTATGGCATTGGTGAGTTCATAAGGC
1 -AAGGATAC-CATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGC
* * * *
33154242 AAGGATACCATGTAAGACCATGTCGAGACATGGCAATGGTGAATTTC--AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGT-AAGTTCATAAGGC
* * ** *
33154291 AAGGATACCACGTAAGACCATGACAATTCATGGCAATGGTA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTA
33154332 GGTACCCGTG
Statistics
Matches: 167, Mismatches: 23, Indels: 23
0.78 0.11 0.11
Matches are distributed among these distances:
48 1 0.01
49 35 0.21
52 8 0.05
53 37 0.22
54 13 0.08
55 69 0.41
56 4 0.02
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.23
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGC
Found at i:33154435 original size:23 final size:24
Alignment explanation
Indices: 33154405--33154449 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
33154395 AAGGTAAGGT
*
33154405 AAGGTAAGACGAGTT-ATGCTAAA
1 AAGGTAAGACAAGTTCATGCTAAA
33154428 AAGGTAAGACAAGTTCATGCTA
1 AAGGTAAGACAAGTTCATGCTA
33154450 GAAGAGCAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 14 0.70
24 6 0.30
ACGTcount: A:0.42, C:0.11, G:0.24, T:0.22
Consensus pattern (24 bp):
AAGGTAAGACAAGTTCATGCTAAA
Found at i:33155888 original size:28 final size:29
Alignment explanation
Indices: 33155838--33155894 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 29
33155828 ATTTCAAAAT
*
33155838 TTAACCCCTTAATTTACACTTTTCTCAAA
1 TTAACCCCTTAATTGACACTTTTCTCAAA
* * *
33155867 TTAATCCC-TAATTGACATTTTTGTCAAA
1 TTAACCCCTTAATTGACACTTTTCTCAAA
33155895 AATCACTTTA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
28 17 0.71
29 7 0.29
ACGTcount: A:0.32, C:0.23, G:0.04, T:0.42
Consensus pattern (29 bp):
TTAACCCCTTAATTGACACTTTTCTCAAA
Found at i:33157899 original size:6 final size:6
Alignment explanation
Indices: 33157881--33157962 Score: 62
Period size: 6 Copynumber: 13.3 Consensus size: 6
33157871 AAGAAACATT
*
33157881 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAG- GTGACAGA ATCAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA ATCAGA
* * *
33157930 ATTAGT ATCAGGTA A-CAGA ATCAAA ATCAGA AT
1 ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
33157963 GTGAATGCAA
Statistics
Matches: 60, Mismatches: 8, Indels: 16
0.71 0.10 0.19
Matches are distributed among these distances:
5 4 0.07
6 47 0.78
7 7 0.12
8 2 0.03
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:33157925 original size:31 final size:31
Alignment explanation
Indices: 33157890--33157962 Score: 110
Period size: 31 Copynumber: 2.4 Consensus size: 31
33157880 TATCAGAACT
*
33157890 AGAATCAGAATCAGAATCAGGTGACAGAATC
1 AGAATCAGAATCAGAATCAGGTAACAGAATC
* *
33157921 AGAATCAGAATTAGTATCAGGTAACAGAATC
1 AGAATCAGAATCAGAATCAGGTAACAGAATC
*
33157952 AAAATCAGAAT
1 AGAATCAGAAT
33157963 GTGAATGCAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 38 1.00
ACGTcount: A:0.48, C:0.14, G:0.19, T:0.19
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGGTAACAGAATC
Found at i:33158133 original size:27 final size:27
Alignment explanation
Indices: 33158081--33158133 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
33158071 GCGAGGCTAC
*
33158081 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGATA
* * *
33158108 CAGATATTGTGGCGAGGCCACTAGAT
1 CAGATATTGTGACGAAGCCACCAGAT
33158134 TGCAGCGAGG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.32, C:0.19, G:0.26, T:0.23
Consensus pattern (27 bp):
CAGATATTGTGACGAAGCCACCAGATA
Found at i:33158399 original size:27 final size:27
Alignment explanation
Indices: 33158369--33158726 Score: 385
Period size: 27 Copynumber: 13.2 Consensus size: 27
33158359 AACACCCTAG
* *
33158369 GGGTAAAATGGTAATTTTATAAATCGA
1 GGGTAAAATAGTAATTTTGTAAATCGA
* *
33158396 GGGTAAAATGGTAATTCTGTAAATCGA
1 GGGTAAAATAGTAATTTTGTAAATCGA
33158423 GGGTAAAATAGTAATTTTGTAAATCGA
1 GGGTAAAATAGTAATTTTGTAAATCGA
* *
33158450 GGGTAAAACAGTAATTTTATAAATCGA
1 GGGTAAAATAGTAATTTTGTAAATCGA
* * ** *
33158477 GGGTAAAACAGTAATTCTGCCAATCAA
1 GGGTAAAATAGTAATTTTGTAAATCGA
**
33158504 GGGTAAAACGGTAATTTTGTAAATCGA
1 GGGTAAAATAGTAATTTTGTAAATCGA
*
33158531 GGGTAAAGTAGTAATTTTGTAAATCGA
1 GGGTAAAATAGTAATTTTGTAAATCGA
* * *
33158558 GGGTAAAACAGATAATTCTGTAAATTGA
1 GGGTAAAATAG-TAATTTTGTAAATCGA
* * *
33158586 GGGTAAAATAATAATTCTATAAATCGA
1 GGGTAAAATAGTAATTTTGTAAATCGA
**
33158613 GGGTAAAACGGTAATTTTGTAAATCGA
1 GGGTAAAATAGTAATTTTGTAAATCGA
* ** * *
33158640 TGGTAAAAT-GATTGTTTTATAAATTGA
1 GGGTAAAATAG-TAATTTTGTAAATCGA
* * * *
33158667 GGGTAAAACAATAATTCTATAAATCGA
1 GGGTAAAATAGTAATTTTGTAAATCGA
* *
33158694 GGATAAAATAGTAATTTTTGTAATTCGA
1 GGGTAAAATAGTAA-TTTTGTAAATCGA
33158722 GGGTA
1 GGGTA
33158727 CTTTGATAAT
Statistics
Matches: 275, Mismatches: 52, Indels: 7
0.82 0.16 0.02
Matches are distributed among these distances:
26 1 0.00
27 237 0.86
28 37 0.13
ACGTcount: A:0.41, C:0.07, G:0.22, T:0.31
Consensus pattern (27 bp):
GGGTAAAATAGTAATTTTGTAAATCGA
Found at i:33158767 original size:109 final size:107
Alignment explanation
Indices: 33158654--33158872 Score: 233
Period size: 109 Copynumber: 2.0 Consensus size: 107
33158644 AAAATGATTG
* * * * *
33158654 TTTTATAAATTGAGGGTAAAACAATAATTCTATAAATCGAGGATAAAAT-AGTAATTTTTGTAAT
1 TTTTACAAACTGAGGGTAAAACAATAATTCTACAAATCGAGGAT-AAATGAGTAA-TTTTATAAA
* **
33158718 TCGAGGGTACTTTGATAATTTTACATGTCGAGGGTATTTCAGTAA
64 CCGAGGGTACTTTGATAATTTTACAACT-GAGGGTATTTCAGTAA
*** * * ** *
33158763 TTTTACAAACTGAGGGTATTTCGATAATTTTACAAATCGAGGATATTTGGGTAATTTTATAAACC
1 TTTTACAAACTGAGGGTAAAACAATAATTCTACAAATCGAGGATAAATGAGTAATTTTATAAACC
* * *
33158828 GGGGGTACTTTGGTAATTTTACAACTGGGGGTATTTCAGTAA
66 GAGGGTACTTTGATAATTTTACAACTGAGGGTATTTCAGTAA
33158870 TTT
1 TTT
33158873 GGTAAACTAA
Statistics
Matches: 90, Mismatches: 19, Indels: 4
0.80 0.17 0.04
Matches are distributed among these distances:
107 18 0.20
108 32 0.36
109 40 0.44
ACGTcount: A:0.33, C:0.09, G:0.20, T:0.38
Consensus pattern (107 bp):
TTTTACAAACTGAGGGTAAAACAATAATTCTACAAATCGAGGATAAATGAGTAATTTTATAAACC
GAGGGTACTTTGATAATTTTACAACTGAGGGTATTTCAGTAA
Found at i:33158792 original size:54 final size:54
Alignment explanation
Indices: 33158719--33158872 Score: 186
Period size: 54 Copynumber: 2.9 Consensus size: 54
33158709 TTTTGTAATT
**
33158719 CGAGGGTACTTTGATAATTTTACATGTCGAGGGTATTTCAGTAATTTTACAAAC
1 CGAGGGTACTTTGATAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAAC
* * ** *
33158773 TGAGGGTA-TTTCGATAATTTTACAAATCGAGGATATTTGGGTAATTTTATAAAC
1 CGAGGGTACTTT-GATAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAAC
* * * *
33158827 CGGGGGTACTTTGGTAATTTTACAACT-GGGGGTATTTCAGTAATTT
1 CGAGGGTACTTTGATAATTTTACAAATCGAGGGTATTTCAGTAATTT
33158873 GGTAAACTAA
Statistics
Matches: 83, Mismatches: 15, Indels: 5
0.81 0.15 0.05
Matches are distributed among these distances:
53 18 0.22
54 62 0.75
55 3 0.04
ACGTcount: A:0.29, C:0.10, G:0.23, T:0.38
Consensus pattern (54 bp):
CGAGGGTACTTTGATAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAAC
Found at i:33158858 original size:27 final size:27
Alignment explanation
Indices: 33158718--33158872 Score: 131
Period size: 27 Copynumber: 5.8 Consensus size: 27
33158708 TTTTTGTAAT
* **
33158718 TCGAGGGTACTTT-GATAATTTTACATG
1 TCGAGGGTA-TTTCGGTAATTTTACAAC
*
33158745 TCGAGGGTATTTCAGTAATTTTACAAAC
1 TCGAGGGTATTTCGGTAATTTTAC-AAC
* *
33158773 T-GAGGGTATTTCGATAATTTTACAAA
1 TCGAGGGTATTTCGGTAATTTTACAAC
* * *
33158799 TCGAGGATATTTGGGTAATTTTATAAAC
1 TCGAGGGTATTTCGGTAATTTTA-CAAC
*
33158827 -CGGGGGTACTTT-GGTAATTTTACAAC
1 TCGAGGGTA-TTTCGGTAATTTTACAAC
* *
33158853 T-GGGGGTATTTCAGTAATTT
1 TCGAGGGTATTTCGGTAATTT
33158873 GGTAAACTAA
Statistics
Matches: 105, Mismatches: 16, Indels: 15
0.77 0.12 0.11
Matches are distributed among these distances:
25 3 0.03
26 23 0.22
27 72 0.69
28 7 0.07
ACGTcount: A:0.28, C:0.10, G:0.23, T:0.39
Consensus pattern (27 bp):
TCGAGGGTATTTCGGTAATTTTACAAC
Found at i:33161561 original size:44 final size:43
Alignment explanation
Indices: 33161503--33161588 Score: 129
Period size: 44 Copynumber: 2.0 Consensus size: 43
33161493 ATTAAATAAC
*
33161503 GATGCCATTGTCCCAGACAG-GGTCTTACACGTAAATCACAAATT
1 GATGCCAATGTCCCAGAC-GTGGTCTTACACG-AAATCACAAATT
*
33161547 GATGCCAATGTCCCAGGCGTGGTCTTACACGAAATCACAAAT
1 GATGCCAATGTCCCAGACGTGGTCTTACACGAAATCACAAAT
33161589 CAGAATCTTA
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
43 12 0.31
44 27 0.69
ACGTcount: A:0.31, C:0.26, G:0.20, T:0.23
Consensus pattern (43 bp):
GATGCCAATGTCCCAGACGTGGTCTTACACGAAATCACAAATT
Found at i:33178216 original size:43 final size:43
Alignment explanation
Indices: 33178168--33178271 Score: 138
Period size: 43 Copynumber: 2.4 Consensus size: 43
33178158 GATTAACGAG
* *
33178168 ATGTGATTATGTGTAAGACCATGTCTGGGACATTGGCATCATT
1 ATGTGATTATGTGTAAGACCATGTCTGGGACAGTGACATCATT
* * *
33178211 ATGTGATTACGTGTAAGACCATGTCTGGGATAGTGACATCGTT
1 ATGTGATTATGTGTAAGACCATGTCTGGGACAGTGACATCATT
*
33178254 ATTTGATT-TCGTGTAAGA
1 ATGTGATTAT-GTGTAAGA
33178272 TAATAGCTGG
Statistics
Matches: 53, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
43 53 1.00
ACGTcount: A:0.26, C:0.12, G:0.26, T:0.36
Consensus pattern (43 bp):
ATGTGATTATGTGTAAGACCATGTCTGGGACAGTGACATCATT
Found at i:33181154 original size:55 final size:53
Alignment explanation
Indices: 33181028--33181162 Score: 164
Period size: 53 Copynumber: 2.5 Consensus size: 53
33181018 AACTTACCAT
* *
33181028 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACAAA
1 TGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTAATGAACTCACAAA
* * * * **
33181081 TGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTTCCTAATAGTAACTTATTAA
1 TGCCATGTCTTGACATGGTCTTACATGGGATCC-TTGCCTAAT-G-AACTCACAAA
33181136 TGCCATGTCTTGACATGGTCTTACATG
1 TGCCATGTCTTGACATGGTCTTACATG
33181163 ATTTCTTTGC
Statistics
Matches: 69, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
52 2 0.03
53 34 0.49
54 1 0.01
55 32 0.46
ACGTcount: A:0.23, C:0.23, G:0.19, T:0.36
Consensus pattern (53 bp):
TGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTAATGAACTCACAAA
Found at i:33188720 original size:107 final size:109
Alignment explanation
Indices: 33188577--33188776 Score: 307
Period size: 107 Copynumber: 1.8 Consensus size: 109
33188567 ATCCTTTTGA
* * *
33188577 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG-AACC-ACCAA-
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTACCTTA-GAAACCTACCAAT
*
33188639 TGCCATGCCTTGGCATGGTCTTATATGGGATCTTTGCCTTATAGT
65 TGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATAGT
* *
33188684 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTACCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTACCTTAGAAACC-TACCAAT
33188749 TGCCATGCCTTGGCATGGTCTTACATGG
65 TGCCATGCCTTGGCATGGTCTTACATGG
33188777 TATCCTTAAA
Statistics
Matches: 83, Mismatches: 6, Indels: 5
0.88 0.06 0.05
Matches are distributed among these distances:
106 1 0.01
107 50 0.60
109 5 0.06
110 27 0.33
ACGTcount: A:0.23, C:0.24, G:0.17, T:0.35
Consensus pattern (109 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTACCTTAGAAACCTACCAATT
GCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATAGT
Found at i:33188734 original size:55 final size:54
Alignment explanation
Indices: 33188530--33188784 Score: 238
Period size: 55 Copynumber: 4.8 Consensus size: 54
33188520 TACGGGGTAC
* * * * * *
33188530 CTTACCATTTCCATGACTTGTCATGGTCTTACGTGGTATCCTT---TT-GA-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTACCTTATAGAA
* * *
33188579 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-GAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTACCTTATAGAA
* * * * * *
33188632 C-CACCAATGCCATGCCTTGGCATGGTCTTATATGGGATCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTACCTTATAG-AA
* * * * *
33188686 CTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTACCTTAGA-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTACCTTATAGAA
*
33188739 CCTTACCAATTGCCATGCCTTGGCATGGTCTTACATGGTATCCTTA
1 -CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTATCCTTA
33188785 AACCCTAATG
Statistics
Matches: 168, Mismatches: 28, Indels: 14
0.80 0.13 0.07
Matches are distributed among these distances:
49 39 0.23
52 43 0.26
53 6 0.04
54 10 0.06
55 70 0.42
ACGTcount: A:0.22, C:0.24, G:0.17, T:0.37
Consensus pattern (54 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTACCTTATAGAA
Found at i:33190400 original size:46 final size:46
Alignment explanation
Indices: 33190211--33190427 Score: 161
Period size: 46 Copynumber: 4.6 Consensus size: 46
33190201 TGTGAGCTAA
* ** * *
33190211 TGTAAGACATGTCTGGGACATGCATCGGCCACATTATGATAGCCAG
1 TGTAAGACATGTCTGGGACATGCATCGACCACAAGACGATAGTCAG
* ** * *
33190257 TGTAAGACCATGTCTGGGACATGGCATC-AACATTGAGACGA-GGGCTAG
1 TGTAAGA-CATGTCTGGGACAT-GCATCGACCA-CAAGACGATAGTC-AG
* * * * * *
33190305 TGTAAGACACGTATGGGACATGCATTGGCCACGAGACG-TAAGTCGG
1 TGTAAGACATGTCTGGGACATGCATCGACCACAAGACGAT-AGTCAG
* * *
33190351 TGTAAGACATGTCTGAGACATGCATCGACTACAAGAGGATAGTCAG
1 TGTAAGACATGTCTGGGACATGCATCGACCACAAGACGATAGTCAG
* *
33190397 TGTAAGACCATGTTTGGGAGATGGCATCGAC
1 TGTAAGA-CATGTCTGGGACAT-GCATCGAC
33190428 TTGAGATATG
Statistics
Matches: 131, Mismatches: 30, Indels: 18
0.73 0.17 0.10
Matches are distributed among these distances:
46 60 0.46
47 46 0.35
48 25 0.19
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.22
Consensus pattern (46 bp):
TGTAAGACATGTCTGGGACATGCATCGACCACAAGACGATAGTCAG
Found at i:33191644 original size:21 final size:21
Alignment explanation
Indices: 33191596--33191646 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
33191586 CACATGAGTG
** *
33191596 TGTGCCCCTTTCACATTGGCG
1 TGTGCCCCTTTCACACGGGCA
*
33191617 TGCGCCCCTTTCACACGGGCA
1 TGTGCCCCTTTCACACGGGCA
33191638 TGTGCCCCT
1 TGTGCCCCT
33191647 ATGTCAAGTC
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.10, C:0.39, G:0.24, T:0.27
Consensus pattern (21 bp):
TGTGCCCCTTTCACACGGGCA
Found at i:33198416 original size:43 final size:43
Alignment explanation
Indices: 33198368--33198534 Score: 146
Period size: 43 Copynumber: 3.9 Consensus size: 43
33198358 GATTAAGGAG
* * *
33198368 ATGTGATTATGTGTAAGACCATGTTTGGGACATTGGCATCATT
1 ATGTGATTACGTGTAAGACCAAGTCTGGGACATTGGCATCATT
**
33198411 ATGTGATTACGTGTAAGACCAAGTCTGGGACATTGGCATCGCT
1 ATGTGATTACGTGTAAGACCAAGTCTGGGACATTGGCATCATT
* * * **
33198454 ATTTGATTTCGTGTAACACCATAG-CTGGG-CTATCAGCATCGA-T
1 ATGTGATTACGTGTAAGACCA-AGTCTGGGAC-ATTGGCATC-ATT
* * *
33198497 ATGTGATAACATGTAAGACCATAG-CTGGGATA-TGGCAT
1 ATGTGATTACGTGTAAGACCA-AGTCTGGGACATTGGCAT
33198535 TGTAAGAGCT
Statistics
Matches: 101, Mismatches: 19, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
42 5 0.05
43 94 0.93
44 2 0.02
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.31
Consensus pattern (43 bp):
ATGTGATTACGTGTAAGACCAAGTCTGGGACATTGGCATCATT
Found at i:33209991 original size:40 final size:40
Alignment explanation
Indices: 33209790--33209983 Score: 309
Period size: 40 Copynumber: 4.9 Consensus size: 40
33209780 ATTCGGATTG
*
33209790 ATAACCGGGCTAAGT-TCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
33209829 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
33209869 ATAACCAGGCCAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
33209909 ATAACCGGGCTAAGTCCTGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
33209949 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
33209984 AAGCTATATC
Statistics
Matches: 142, Mismatches: 12, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
39 14 0.10
40 128 0.90
ACGTcount: A:0.27, C:0.22, G:0.28, T:0.24
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:33213831 original size:46 final size:46
Alignment explanation
Indices: 33213764--33213938 Score: 203
Period size: 46 Copynumber: 3.8 Consensus size: 46
33213754 TGTAACCTGC
* * *
33213764 CCATAAGTGAACTTGGACTCAACTCAACGAGCTCGGGCGTTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCAT
* *
33213810 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C-ATTTGCAT
* * * *
33213860 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCAT
*
33213903 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
33213939 ATGCTCAACC
Statistics
Matches: 108, Mismatches: 14, Indels: 14
0.79 0.10 0.10
Matches are distributed among these distances:
43 5 0.05
44 2 0.02
45 2 0.02
46 61 0.56
47 28 0.26
48 3 0.03
49 2 0.02
50 5 0.05
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCAT
Found at i:33213880 original size:93 final size:93
Alignment explanation
Indices: 33213772--33213942 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
33213762 GCCCATAAGT
* * * * *
33213772 GAACTTGGACTCAACTCAACGAGCTCGGGCGTTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
33213837 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
33213865 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
33213930 CGAGTTCGGATGC
66 CGAGTTCGGATGC
33213943 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:33213958 original size:46 final size:44
Alignment explanation
Indices: 33213815--33213958 Score: 132
Period size: 46 Copynumber: 3.1 Consensus size: 44
33213805 TGCATCCATA
33213815 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CATCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATCT
* * * *
33213862 CA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-A
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATCT
*
33213908 AGTGAACTCAGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT-CT
33213954 AGTGA
1 AGTGA
33213959 CATGTCACTT
Statistics
Matches: 79, Mismatches: 10, Indels: 16
0.75 0.10 0.15
Matches are distributed among these distances:
44 9 0.11
45 1 0.01
46 32 0.41
47 31 0.39
48 1 0.01
49 4 0.05
50 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.22
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCT
Found at i:33217401 original size:30 final size:29
Alignment explanation
Indices: 33217360--33217445 Score: 118
Period size: 30 Copynumber: 2.9 Consensus size: 29
33217350 GTAACCTCGA
* *
33217360 TATAATCTCAACTTGGGTGAGCAACCTTGT
1 TATAATGTCAACTTGTGTGAGCAACC-TGT
*
33217390 TATAGTGTCAACTTGTGTGAGCAATCCTGT
1 TATAATGTCAACTTGTGTGAGCAA-CCTGT
*
33217420 TATAATGTCAGCTTGTGTGAGCAACC
1 TATAATGTCAACTTGTGTGAGCAACC
33217446 CTGATATACT
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
29 2 0.04
30 46 0.92
31 2 0.04
ACGTcount: A:0.26, C:0.19, G:0.22, T:0.34
Consensus pattern (29 bp):
TATAATGTCAACTTGTGTGAGCAACCTGT
Found at i:33217464 original size:30 final size:30
Alignment explanation
Indices: 33217358--33217453 Score: 111
Period size: 30 Copynumber: 3.2 Consensus size: 30
33217348 GGGTAACCTC
* * * *
33217358 GATATAATCTCAACTTGGGTGAGCAACCTT
1 GATATAATGTCAGCTTGTGTGAGCAACCCT
* * * *
33217388 GTTATAGTGTCAACTTGTGTGAGCAATCCT
1 GATATAATGTCAGCTTGTGTGAGCAACCCT
*
33217418 GTTATAATGTCAGCTTGTGTGAGCAACCCT
1 GATATAATGTCAGCTTGTGTGAGCAACCCT
33217448 GATATA
1 GATATA
33217454 CTTTTAGCTT
Statistics
Matches: 56, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 56 1.00
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.33
Consensus pattern (30 bp):
GATATAATGTCAGCTTGTGTGAGCAACCCT
Found at i:33218173 original size:20 final size:20
Alignment explanation
Indices: 33218143--33218196 Score: 92
Period size: 20 Copynumber: 2.8 Consensus size: 20
33218133 AAGGTAACTA
*
33218143 AGTTC-AAAAGAAAATAGTG
1 AGTTCTAAAAGAAAAGAGTG
33218162 AGTTCTAAAAGAAAAGAGTG
1 AGTTCTAAAAGAAAAGAGTG
33218182 AGTTCTAAAAGAAAA
1 AGTTCTAAAAGAAAA
33218197 CATATCAATA
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
19 5 0.15
20 28 0.85
ACGTcount: A:0.54, C:0.06, G:0.20, T:0.20
Consensus pattern (20 bp):
AGTTCTAAAAGAAAAGAGTG
Found at i:33239860 original size:27 final size:27
Alignment explanation
Indices: 33239843--33240020 Score: 133
Period size: 27 Copynumber: 6.6 Consensus size: 27
33239833 ATATTAAGTC
33239843 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
* *
33239870 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
* * *
33239898 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTCAGTGCTATATAATCAACT
* *** ** *
33239925 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTCAGTGCTATATAATCAACT
* * **
33239952 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTCAGTGCTAT-ATAATCAACT
* * * * *
33239979 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTCAGTGCTATATAATCAACT
*
33240006 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
33240021 GTACAATTTA
Statistics
Matches: 131, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
27 104 0.79
28 27 0.21
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:33239982 original size:54 final size:54
Alignment explanation
Indices: 33239843--33240019 Score: 214
Period size: 54 Copynumber: 3.3 Consensus size: 54
33239833 ATATTAAGTC
* * *
33239843 CGCACACTCAGTGCTAT-ATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGC-ATCATAATCAACTCGCACACTTAGTGCAACATAGTCAAA-T
* ** * *
33239898 CGCACACTTAGTGC-TACATAGTCAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCAT-CATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
* **
33239952 CGCACACTTAGTGCATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCATCATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
33240006 CGCACACTTAGTGC
1 CGCACACTTAGTGC
33240020 TGTACAATTT
Statistics
Matches: 105, Mismatches: 14, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
53 1 0.01
54 60 0.57
55 44 0.42
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.27
Consensus pattern (54 bp):
CGCACACTTAGTGCATCATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
Found at i:33240009 original size:81 final size:82
Alignment explanation
Indices: 33239864--33240019 Score: 235
Period size: 81 Copynumber: 1.9 Consensus size: 82
33239854 TGCTATATAA
* *
33239864 TCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTAGTGCTACATAGTCAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTAGTGCAACATAGTCAAATCGCA
33239929 CACTTAGTGCCGCATGG
66 CACTTAGTGCCGCATGG
* * **
33239946 TCAATTCGCACACTTAGTGC-ATCATATTC-ATTTCGCACACTTAGTGCAACATAGTCAAATCGC
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAACTCGCACACTTAGTGCAACATAGTCAAATCGC
33240009 ACACTTAGTGC
65 ACACTTAGTGC
33240020 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 42 0.63
82 25 0.37
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (82 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTAGTGCAACATAGTCAAATCGCA
CACTTAGTGCCGCATGG
Found at i:33247749 original size:27 final size:27
Alignment explanation
Indices: 33247732--33247909 Score: 133
Period size: 27 Copynumber: 6.6 Consensus size: 27
33247722 ATATTAAGTC
33247732 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
* *
33247759 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
* * *
33247787 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTCAGTGCTATATAATCAACT
* *** ** *
33247814 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTCAGTGCTATATAATCAACT
* * **
33247841 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTCAGTGCTAT-ATAATCAACT
* * * * *
33247868 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTCAGTGCTATATAATCAACT
*
33247895 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
33247910 GTACAATTTA
Statistics
Matches: 131, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
27 104 0.79
28 27 0.21
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:33247871 original size:54 final size:54
Alignment explanation
Indices: 33247732--33247908 Score: 214
Period size: 54 Copynumber: 3.3 Consensus size: 54
33247722 ATATTAAGTC
* * *
33247732 CGCACACTCAGTGCTAT-ATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGC-ATCATAATCAACTCGCACACTTAGTGCAACATAGTCAAA-T
* ** * *
33247787 CGCACACTTAGTGC-TACATAGTCAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCAT-CATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
* **
33247841 CGCACACTTAGTGCATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCATCATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
33247895 CGCACACTTAGTGC
1 CGCACACTTAGTGC
33247909 TGTACAATTT
Statistics
Matches: 105, Mismatches: 14, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
53 1 0.01
54 60 0.57
55 44 0.42
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.27
Consensus pattern (54 bp):
CGCACACTTAGTGCATCATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
Found at i:33247898 original size:81 final size:82
Alignment explanation
Indices: 33247753--33247908 Score: 235
Period size: 81 Copynumber: 1.9 Consensus size: 82
33247743 TGCTATATAA
* *
33247753 TCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTAGTGCTACATAGTCAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTAGTGCAACATAGTCAAATCGCA
33247818 CACTTAGTGCCGCATGG
66 CACTTAGTGCCGCATGG
* * **
33247835 TCAATTCGCACACTTAGTGC-ATCATATTC-ATTTCGCACACTTAGTGCAACATAGTCAAATCGC
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAACTCGCACACTTAGTGCAACATAGTCAAATCGC
33247898 ACACTTAGTGC
65 ACACTTAGTGC
33247909 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 42 0.63
82 25 0.37
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (82 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTAGTGCAACATAGTCAAATCGCA
CACTTAGTGCCGCATGG
Found at i:33252006 original size:22 final size:21
Alignment explanation
Indices: 33251981--33252032 Score: 52
Period size: 22 Copynumber: 2.4 Consensus size: 21
33251971 GCTAAGTAGG
*
33251981 TTTCACAGCCTTTCTTCACATA
1 TTTCACAGCCTTTATT-ACATA
*
33252003 TTTC-CATGCTTTTATTACATA
1 TTTCACA-GCCTTTATTACATA
*
33252024 TATCACAGC
1 TTTCACAGC
33252033 TGGTAGTCCA
Statistics
Matches: 25, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
21 12 0.48
22 13 0.52
ACGTcount: A:0.25, C:0.27, G:0.06, T:0.42
Consensus pattern (21 bp):
TTTCACAGCCTTTATTACATA
Found at i:33254553 original size:13 final size:14
Alignment explanation
Indices: 33254520--33254558 Score: 53
Period size: 13 Copynumber: 2.7 Consensus size: 14
33254510 ACGCATTAAA
33254520 AAATATATATAATCTT
1 AAATAT-TA-AATCTT
33254536 AAATATTAAATC-T
1 AAATATTAAATCTT
33254549 AAATATTAAA
1 AAATATTAAA
33254559 GGTAAAATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 11 0.48
14 4 0.17
15 2 0.09
16 6 0.26
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.38
Consensus pattern (14 bp):
AAATATTAAATCTT
Found at i:33258908 original size:13 final size:13
Alignment explanation
Indices: 33258890--33258914 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
33258880 TATATAAATT
33258890 CACAAAAAATAAA
1 CACAAAAAATAAA
33258903 CACAAAAAATAA
1 CACAAAAAATAA
33258915 TTTTTAAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.76, C:0.16, G:0.00, T:0.08
Consensus pattern (13 bp):
CACAAAAAATAAA
Found at i:33270662 original size:27 final size:28
Alignment explanation
Indices: 33270632--33270708 Score: 88
Period size: 26 Copynumber: 2.9 Consensus size: 28
33270622 TACCGATGAT
*
33270632 TTGTAAAATTATTAAAATACCCCTAG-A
1 TTGTAAAATTATTGAAATACCCCTAGTA
* *
33270659 TTGTAATA-TATTGAAATA-CCCTTGTA
1 TTGTAAAATTATTGAAATACCCCTAGTA
* *
33270685 GTGTAAAATTATCGAAATACCCCT
1 TTGTAAAATTATTGAAATACCCCT
33270709 GCAGGGTAAA
Statistics
Matches: 41, Mismatches: 6, Indels: 5
0.79 0.12 0.10
Matches are distributed among these distances:
25 5 0.12
26 16 0.39
27 16 0.39
28 4 0.10
ACGTcount: A:0.39, C:0.16, G:0.10, T:0.35
Consensus pattern (28 bp):
TTGTAAAATTATTGAAATACCCCTAGTA
Found at i:33271112 original size:22 final size:22
Alignment explanation
Indices: 33271080--33271138 Score: 73
Period size: 22 Copynumber: 2.7 Consensus size: 22
33271070 TAATCTGATT
33271080 ATGGCTTTGTGCCAACCTAAAA
1 ATGGCTTTGTGCCAACCTAAAA
* * * * *
33271102 ATGGCTCTGTGCCATCTTGAAT
1 ATGGCTTTGTGCCAACCTAAAA
33271124 ATGGCTTTGTGCCAA
1 ATGGCTTTGTGCCAA
33271139 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.24, C:0.22, G:0.22, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAA
Found at i:33271526 original size:32 final size:32
Alignment explanation
Indices: 33271490--33271558 Score: 79
Period size: 32 Copynumber: 2.2 Consensus size: 32
33271480 ATTTATGAGA
*
33271490 TCTGTCATT-GTATTGGGCTTAGGACCACTTG-T
1 TCTGTCATTGGT-TTGGGC-TAGGACCAATTGAT
* *
33271522 TCTGTTATTGGTTTGGGCTAGGCCCAATTGAT
1 TCTGTCATTGGTTTGGGCTAGGACCAATTGAT
33271554 TCTGT
1 TCTGT
33271559 TATGGGCTGT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
31 10 0.31
32 20 0.62
33 2 0.06
ACGTcount: A:0.14, C:0.17, G:0.26, T:0.42
Consensus pattern (32 bp):
TCTGTCATTGGTTTGGGCTAGGACCAATTGAT
Found at i:33273912 original size:55 final size:55
Alignment explanation
Indices: 33273841--33273945 Score: 183
Period size: 55 Copynumber: 1.9 Consensus size: 55
33273831 TGTCACTAGG
33273841 CCATGTGTCACACATGGTTGAGCCACACGTCAGTGTCTTAGGCCGTGTGGCTCAA
1 CCATGTGTCACACATGGTTGAGCCACACGTCAGTGTCTTAGGCCGTGTGGCTCAA
* * *
33273896 CCATGTGTCACGCATGGTTGAGTCACACGTCCGTGTCTTAGGCCGTGTGG
1 CCATGTGTCACACATGGTTGAGCCACACGTCAGTGTCTTAGGCCGTGTGG
33273946 ACATGAAGTT
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
55 47 1.00
ACGTcount: A:0.17, C:0.27, G:0.30, T:0.27
Consensus pattern (55 bp):
CCATGTGTCACACATGGTTGAGCCACACGTCAGTGTCTTAGGCCGTGTGGCTCAA
Found at i:33279013 original size:40 final size:40
Alignment explanation
Indices: 33278953--33279164 Score: 257
Period size: 40 Copynumber: 5.3 Consensus size: 40
33278943 CATTTGAATG
* * *
33278953 ATATTCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
* * *
33278993 TTATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
* *
33279033 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATT
* * *
33279073 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
* * * * *
33279113 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
33279153 ATATCC-GGCTAA
1 ATATCCGGGCTAA
33279165 ATTCTGAAGA
Statistics
Matches: 153, Mismatches: 17, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
39 7 0.05
40 143 0.93
41 3 0.02
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
Found at i:33286386 original size:13 final size:13
Alignment explanation
Indices: 33286368--33286394 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
33286358 ATATATCATA
33286368 TGTATGAAAATTT
1 TGTATGAAAATTT
33286381 TGTATGAAAATTT
1 TGTATGAAAATTT
33286394 T
1 T
33286395 AACGTTTCTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.00, G:0.15, T:0.48
Consensus pattern (13 bp):
TGTATGAAAATTT
Done.