Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 103 of 362
Found at i:33286936 original size:17 final size:17
Alignment explanation
Indices: 33286914--33286949 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
33286904 TAATATGTTT
33286914 TGTATTTGAATTTTTGA
1 TGTATTTGAATTTTTGA
33286931 TGTATTTGAATTTTTGA
1 TGTATTTGAATTTTTGA
33286948 TG
1 TG
33286950 AAATTGAGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.22, C:0.00, G:0.19, T:0.58
Consensus pattern (17 bp):
TGTATTTGAATTTTTGA
Found at i:33286956 original size:17 final size:17
Alignment explanation
Indices: 33286919--33286956 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
33286909 TGTTTTGTAT
* *
33286919 TTGAATTTTTGATGTAT
1 TTGAATTTTTGATGAAA
33286936 TTGAATTTTTGATGAAA
1 TTGAATTTTTGATGAAA
33286953 TTGA
1 TTGA
33286957 GTATTTTGGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.29, C:0.00, G:0.18, T:0.53
Consensus pattern (17 bp):
TTGAATTTTTGATGAAA
Found at i:33287665 original size:43 final size:43
Alignment explanation
Indices: 33287496--33287666 Score: 161
Period size: 43 Copynumber: 4.0 Consensus size: 43
33287486 ATAGGATTTT
* *
33287496 GATATTTGATTTCGTGTAAGACCACGTCTGGGACGTTGGCATC
1 GATATTTGATTACATGTAAGACCACGTCTGGGACGTTGGCATC
* * * * * *
33287539 GAT-TTGAGATTTACATGTAAGATCATGTTTGGGACATTGACATC
1 GATATT-TGA-TTACATGTAAGACCACGTCTGGGACGTTGGCATC
* * * *
33287583 -TTATTTGATTTCGTGTAAAACC-CTGTCTGGGACAG-TGGCATC
1 GATATTTGATTACATGTAAGACCAC-GTCTGGGAC-GTTGGCATC
*
33287625 GATATTTGATTACATGTAAGACCACGTCTGGGATGTTGGCAT
1 GATATTTGATTACATGTAAGACCACGTCTGGGACGTTGGCAT
33287667 TGTATGAGCT
Statistics
Matches: 97, Mismatches: 23, Indels: 16
0.71 0.17 0.12
Matches are distributed among these distances:
42 27 0.28
43 40 0.41
44 30 0.31
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.35
Consensus pattern (43 bp):
GATATTTGATTACATGTAAGACCACGTCTGGGACGTTGGCATC
Found at i:33295900 original size:43 final size:42
Alignment explanation
Indices: 33295846--33295973 Score: 120
Period size: 43 Copynumber: 3.0 Consensus size: 42
33295836 ATATCATATA
* *
33295846 ATGCCAATGTCCCAGACGTGGTCTTAC-ATGTAATCACATATCG
1 ATGCCACTGTCCCAGACGTGGTCTTACAAAG-AA-CACATATCG
33295889 ATGCCACTGTCCCAGACAG-GGTCTTACAAAAGAACACATATCG
1 ATGCCACTGTCCCAGAC-GTGGTCTTAC-AAAGAACACATATCG
* * *
33295932 ATGCCAAC-ATCCCAGACGTAGTC-TAAAACGAGAACACATATC
1 ATGCC-ACTGTCCCAGACGTGGTCTTACAA--AGAACACATATC
33295974 AGAAATCTTA
Statistics
Matches: 73, Mismatches: 5, Indels: 14
0.79 0.05 0.15
Matches are distributed among these distances:
41 2 0.03
42 3 0.04
43 61 0.84
44 5 0.07
45 2 0.03
ACGTcount: A:0.34, C:0.27, G:0.17, T:0.21
Consensus pattern (42 bp):
ATGCCACTGTCCCAGACGTGGTCTTACAAAGAACACATATCG
Found at i:33305182 original size:46 final size:46
Alignment explanation
Indices: 33305132--33305304 Score: 201
Period size: 46 Copynumber: 3.7 Consensus size: 46
33305122 TGGTTAAGCA
*
33305132 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCGAATG
* * *
33305178 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCGAA-T--G
* *
33305223 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGCATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCGAATG
* *
33305271 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
33305305 GGGGTGGGTT
Statistics
Matches: 107, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 61 0.57
47 29 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCGAATG
Found at i:33305288 original size:93 final size:93
Alignment explanation
Indices: 33305129--33305299 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
33305119 GGATGGTTAA
* * *
33305129 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGCATGCGAACGCCCGAACTCGTTGAGT
33305194 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
33305222 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGCATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGCATGCGAACGCCCGAACTCGTTGAGT
33305287 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
33305300 ACTTAGGGGT
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGCATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:33313075 original size:19 final size:20
Alignment explanation
Indices: 33313038--33313075 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
33313028 GTAAGGTGGT
33313038 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
33313058 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
33313076 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:33321290 original size:258 final size:258
Alignment explanation
Indices: 33320833--33321348 Score: 1005
Period size: 258 Copynumber: 2.0 Consensus size: 258
33320823 TATGGCCCAC
*
33320833 AGGCCCATTCCAGAACAGAACAGACATATTCGTGTATGCAAGCCCAACCCAGGCTATAACCAACC
1 AGGCCCATTCCAGAACAGAACAGACATATTCGTGTATGCAAGCCCAACCCAGCCTATAACCAACC
*
33320898 GCTACACTCCACCCGTACCAGCCCTACACTACATCTGGGGAATAGCTCAACCCACCCAGCCCTAC
66 CCTACACTCCACCCGTACCAGCCCTACACTACATCTGGGGAATAGCTCAACCCACCCAGCCCTAC
*
33320963 ACTCCACAGTTGCAGCATTGCTGCTCAGATATCAGTAAGTTGAGGCAAAGCCTCTAGTACGTGGA
131 ACTCCACAGTTGCAGCATTGCTGCTAAGATATCAGTAAGTTGAGGCAAAGCCTCTAGTACGTGGA
33321028 CAAGCCACTTTCAGTACTTCCTCCATCAATAACCCAGTCCCATGCATCAGATAAAAATAACAT
196 CAAGCCACTTTCAGTACTTCCTCCATCAATAACCCAGTCCCATGCATCAGATAAAAATAACAT
33321091 AGGCCCATTCCAGAACAGAACAGACATATTCGTGTATGCAAGCCCAACCCAGCCTATAACCAACC
1 AGGCCCATTCCAGAACAGAACAGACATATTCGTGTATGCAAGCCCAACCCAGCCTATAACCAACC
33321156 CCTACACTCCACCCGTACCAGCCCTACACTACATCTGGGGAATAGCTCAACCCACCCAGCCCTAC
66 CCTACACTCCACCCGTACCAGCCCTACACTACATCTGGGGAATAGCTCAACCCACCCAGCCCTAC
33321221 ACTCCACAGTTGCAGCATTGCTGCTAAGATATCAGTAAGTTGAGGCAAAGCCTCTAGTACGTGGA
131 ACTCCACAGTTGCAGCATTGCTGCTAAGATATCAGTAAGTTGAGGCAAAGCCTCTAGTACGTGGA
33321286 CAAGCCACTTTCAGTACTTCCTCCATCAATAACCCAGTCCCATGCATCAGATAAAAATAACAT
196 CAAGCCACTTTCAGTACTTCCTCCATCAATAACCCAGTCCCATGCATCAGATAAAAATAACAT
33321349 GGCATGCAGT
Statistics
Matches: 255, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
258 255 1.00
ACGTcount: A:0.32, C:0.33, G:0.16, T:0.20
Consensus pattern (258 bp):
AGGCCCATTCCAGAACAGAACAGACATATTCGTGTATGCAAGCCCAACCCAGCCTATAACCAACC
CCTACACTCCACCCGTACCAGCCCTACACTACATCTGGGGAATAGCTCAACCCACCCAGCCCTAC
ACTCCACAGTTGCAGCATTGCTGCTAAGATATCAGTAAGTTGAGGCAAAGCCTCTAGTACGTGGA
CAAGCCACTTTCAGTACTTCCTCCATCAATAACCCAGTCCCATGCATCAGATAAAAATAACAT
Found at i:33325446 original size:26 final size:28
Alignment explanation
Indices: 33325417--33325492 Score: 75
Period size: 26 Copynumber: 2.8 Consensus size: 28
33325407 ACCTTAACCC
*
33325417 TAGGGGTATATCAGTAATTTTGCT-C-A
1 TAGGGGTATATCAGTAATTTTCCTCCTA
* *
33325443 TAGGGGTAAATCTGTAAATTTTCCTCCTA
1 TAGGGGTATATCAGT-AATTTTCCTCCTA
** *
33325472 TAAAGGTATTTCAGTAATTTT
1 TAGGGGTATATCAGTAATTTT
33325493 ATCAGTTTTA
Statistics
Matches: 39, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
26 13 0.33
27 8 0.21
28 7 0.18
29 11 0.28
ACGTcount: A:0.29, C:0.12, G:0.18, T:0.41
Consensus pattern (28 bp):
TAGGGGTATATCAGTAATTTTCCTCCTA
Found at i:33329706 original size:43 final size:43
Alignment explanation
Indices: 33329659--33329775 Score: 130
Period size: 42 Copynumber: 2.7 Consensus size: 43
33329649 TCTTAGACGT
* *
33329659 GGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAAACAA
1 GGTCTTACACGTAATCAAATATCGATGCCAATGTCCCAAACAA
* * * * *
33329702 GGTCTTACACGAAATCATATA-CGATGCCAATGTCTCAGACAT
1 GGTCTTACACGTAATCAAATATCGATGCCAATGTCCCAAACAA
*
33329744 GGCCTTACACGTAAATCACAA-ATCGATGCCAA
1 GGTCTTACACGT-AATCA-AATATCGATGCCAA
33329776 CATCCCAGAT
Statistics
Matches: 61, Mismatches: 10, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
42 27 0.44
43 24 0.39
44 10 0.16
ACGTcount: A:0.35, C:0.26, G:0.15, T:0.24
Consensus pattern (43 bp):
GGTCTTACACGTAATCAAATATCGATGCCAATGTCCCAAACAA
Found at i:33329751 original size:42 final size:43
Alignment explanation
Indices: 33329640--33329799 Score: 144
Period size: 43 Copynumber: 3.7 Consensus size: 43
33329630 AGATCGTACA
* * * * *
33329640 ATGCCAACGTCTTAGACGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAATGTCTCAGACATGGTCTTACACGAAATCAAATATCG
* * * * *
33329683 ATGCCACTGTCCCAAACAAGGTCTTACACGAAATCATATA-CG
1 ATGCCAATGTCTCAGACATGGTCTTACACGAAATCAAATATCG
*
33329725 ATGCCAATGTCTCAGACATGGCCTTACACGTAAATCACAA-ATCG
1 ATGCCAATGTCTCAGACATGGTCTTACACG-AAATCA-AATATCG
** * **
33329769 ATGCCAACATCCCAGATGTGGTCTTACACGA
1 ATGCCAATGTCTCAGACATGGTCTTACACGA
33329800 TAACACATAT
Statistics
Matches: 92, Mismatches: 22, Indels: 6
0.77 0.18 0.05
Matches are distributed among these distances:
42 27 0.29
43 38 0.41
44 27 0.29
ACGTcount: A:0.33, C:0.26, G:0.17, T:0.24
Consensus pattern (43 bp):
ATGCCAATGTCTCAGACATGGTCTTACACGAAATCAAATATCG
Found at i:33335723 original size:47 final size:47
Alignment explanation
Indices: 33335669--33335862 Score: 298
Period size: 47 Copynumber: 4.1 Consensus size: 47
33335659 TTAGGATTTT
** * *
33335669 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
33335716 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
33335763 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
33335810 ATGTGATGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
33335857 ATGTGA
1 ATGTGA
33335863 AATATGTATG
Statistics
Matches: 135, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 135 1.00
ACGTcount: A:0.34, C:0.11, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:33335769 original size:22 final size:22
Alignment explanation
Indices: 33335698--33335816 Score: 59
Period size: 22 Copynumber: 5.1 Consensus size: 22
33335688 GTATATATGA
33335698 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
33335720 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
33335745 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* *
33335767 GATGAATGTG-AGCAT-G-CATATGTGT
1 GAT-AA-G-GCCGAATGGCCA-A--TGT
33335792 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
33335814 GAT
1 GAT
33335817 GAATATGAAC
Statistics
Matches: 71, Mismatches: 10, Indels: 32
0.63 0.09 0.28
Matches are distributed among these distances:
22 20 0.28
23 17 0.24
24 17 0.24
25 17 0.24
ACGTcount: A:0.32, C:0.13, G:0.30, T:0.24
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:33335938 original size:52 final size:52
Alignment explanation
Indices: 33335831--33335943 Score: 156
Period size: 52 Copynumber: 2.2 Consensus size: 52
33335821 ATGAACATGC
* * *
33335831 ATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTAT
1 ATATATATGGTAAAGCCGAATGGCTAATGTGAAATATGTAGGAGATATGCAT
* * * *
33335883 ATATATATGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGCGATGTGCGT
1 ATATATATGGTAAAGCCGAATGGCTAATGTGAAATATGTAGGAGATATGCAT
33335935 ATAT-TATGG
1 ATATATATGG
33335944 CCGAACGACC
Statistics
Matches: 54, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
51 5 0.09
52 49 0.91
ACGTcount: A:0.34, C:0.07, G:0.27, T:0.32
Consensus pattern (52 bp):
ATATATATGGTAAAGCCGAATGGCTAATGTGAAATATGTAGGAGATATGCAT
Found at i:33338025 original size:40 final size:40
Alignment explanation
Indices: 33337827--33338018 Score: 278
Period size: 40 Copynumber: 4.8 Consensus size: 40
33337817 TGGATGATAA
* *
33337827 CCGGGCTAAGTCCCAAAGGCATTTGTGCGAGCTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
*
33337867 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
*
33337907 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* *
33337947 CTGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AAT
* * * *
33337987 CCGGGCTATGCCCCGAAGGCATTCGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
33338019 AGCTATATCC
Statistics
Matches: 140, Mismatches: 11, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
40 138 0.99
41 2 0.01
ACGTcount: A:0.24, C:0.25, G:0.29, T:0.22
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
Found at i:33339449 original size:37 final size:37
Alignment explanation
Indices: 33339396--33339476 Score: 117
Period size: 37 Copynumber: 2.2 Consensus size: 37
33339386 GGGTGTTACA
* * *
33339396 GAGATTATGTCTGGGTAAGACCCGATGACTAAGTGTG
1 GAGATTTTGTCCGGGTAAGACCCGATAACTAAGTGTG
**
33339433 GAGATTTTGTCCGGGTAAGACCCGATAACTTCGTGTG
1 GAGATTTTGTCCGGGTAAGACCCGATAACTAAGTGTG
33339470 GAGATTT
1 GAGATTT
33339477 CGTCTGAGCT
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.25, C:0.15, G:0.31, T:0.30
Consensus pattern (37 bp):
GAGATTTTGTCCGGGTAAGACCCGATAACTAAGTGTG
Found at i:33346343 original size:27 final size:27
Alignment explanation
Indices: 33346303--33346579 Score: 410
Period size: 27 Copynumber: 10.3 Consensus size: 27
33346293 CCCAAAATAA
* *
33346303 GTAAAATGATCGTAATGCCCTTGTAGG
1 GTAAAATGACCGTAATGCCCCTGTAGG
33346330 GTAAAATGACCGTAATGCCCCTGTAGG
1 GTAAAATGACCGTAATGCCCCTGTAGG
*
33346357 GTAAAACGACCGTAATGCCCCTGTAGG
1 GTAAAATGACCGTAATGCCCCTGTAGG
* *
33346384 GTAAAATGACCGTAATGCCCCTATAGT
1 GTAAAATGACCGTAATGCCCCTGTAGG
*
33346411 GTAAAATAACCGTAATGCCCCTGTAGG
1 GTAAAATGACCGTAATGCCCCTGTAGG
*
33346438 GTAAAATGACCGTAATACCCCTGTAGG
1 GTAAAATGACCGTAATGCCCCTGTAGG
*
33346465 GTAAAATGACTGTAATGCCCCTGTAGG
1 GTAAAATGACCGTAATGCCCCTGTAGG
* *
33346492 GTAAAATGACCGTAATACCCCTATAGG
1 GTAAAATGACCGTAATGCCCCTGTAGG
* *
33346519 GTAAAATGACTGTAATGCCCCTATAGG
1 GTAAAATGACCGTAATGCCCCTGTAGG
* * * *
33346546 GTAAAATGACCATAATACCCCTATATG
1 GTAAAATGACCGTAATGCCCCTGTAGG
33346573 GTAAAAT
1 GTAAAAT
33346580 AATGATTATG
Statistics
Matches: 228, Mismatches: 22, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 228 1.00
ACGTcount: A:0.34, C:0.21, G:0.22, T:0.24
Consensus pattern (27 bp):
GTAAAATGACCGTAATGCCCCTGTAGG
Found at i:33348472 original size:42 final size:42
Alignment explanation
Indices: 33348413--33348493 Score: 126
Period size: 42 Copynumber: 1.9 Consensus size: 42
33348403 AATAATCATG
* *
33348413 GCCCGAAGCCAACTCAATGAATCTCACACCCGAAGTGCCATT
1 GCCCGAAGCCAACTCAATGAACCCCACACCCGAAGTGCCATT
* *
33348455 GCCCGAAGCCAACTCAATGTACCCCGCACCCGAAGTGCC
1 GCCCGAAGCCAACTCAATGAACCCCACACCCGAAGTGCC
33348494 TTTATCACGG
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 35 1.00
ACGTcount: A:0.28, C:0.40, G:0.19, T:0.14
Consensus pattern (42 bp):
GCCCGAAGCCAACTCAATGAACCCCACACCCGAAGTGCCATT
Found at i:33374881 original size:27 final size:27
Alignment explanation
Indices: 33374851--33375028 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
33374841 ATATTGAGTC
* * * *
33374851 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
33374878 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
33374905 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
33374933 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
33374960 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
33374987 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
33375014 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
33375029 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:33374990 original size:82 final size:81
Alignment explanation
Indices: 33374872--33375027 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
33374862 TGCTATATAA
* *
33374872 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
33374937 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
33374954 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
33375018 CACTTAGTGC
65 CACTTAGTGC
33375028 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:33385526 original size:50 final size:48
Alignment explanation
Indices: 33385354--33385574 Score: 139
Period size: 48 Copynumber: 4.6 Consensus size: 48
33385344 GTATAATGCT
* ** * * *
33385354 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCGTCCATCAAGT--T
1 GATGCCATGTCCCAAACATGGTCTTACACTAACTCCTCCA-CATGTGCC
* * * * * *
33385401 GATGCCAAGTCCCAAACATGGTATTACACTGACT-ATCAAAATCAAG-GCC
1 GATGCCATGTCCCAAACATGGTCTTACACTAACTCCTC--CA-CATGTGCC
* * * *
33385450 AACGCCATGTCCCAGAA-ATGGTCTTACACTAGCT-CTCGCACATCCGTGTC
1 GATGCCATGTCCCA-AACATGGTCTTACACTAACTCCTC-CACAT--GTGCC
* * * *
33385500 GATGCCATGTCCCAAACATGGACTTACGCTAACTCCTCTATATGTGCC
1 GATGCCATGTCCCAAACATGGTCTTACACTAACTCCTCCACATGTGCC
*
33385548 GATGCCATGTCCCAGACATGGTCTTAC
1 GATGCCATGTCCCAAACATGGTCTTAC
33385575 TCTGACACAT
Statistics
Matches: 136, Mismatches: 28, Indels: 19
0.74 0.15 0.10
Matches are distributed among these distances:
46 2 0.01
47 32 0.24
48 36 0.26
49 30 0.22
50 33 0.24
51 3 0.02
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (48 bp):
GATGCCATGTCCCAAACATGGTCTTACACTAACTCCTCCACATGTGCC
Found at i:33385651 original size:46 final size:46
Alignment explanation
Indices: 33385547--33385769 Score: 183
Period size: 46 Copynumber: 4.8 Consensus size: 46
33385537 CTATATGTGC
*
33385547 CGATGCCATGTCCCAGACATGGTCTTACTCT-GAC--ACATCTCGTA-GT
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAG-CTTACATCTCG-AGGT
* * * * *
33385593 TGACGCATGTCCCAGACATGTCTTACACTGGCTTACCTCTCGAGGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTTACATCTCGAGGT
* * *
33385639 CGATGCATGTCCCAGACATGTCTTACACTAGCTCT-CGTCTCAATGT
1 CGATGCATGTCCCAGACATGTCTTACACTAGCT-TACATCTCGAGGT
* * * *
33385685 CGATGCCATGTCCCAAACATGGTCTTACGCTAGCTCT-CATAAT-GTGGTT
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCT-TACAT-CTCGAGG-T
33385734 C-ATGCATGTCCCAGACATGTCTTACACTAGCTTACA
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTTACA
33385770 AATGACCCAA
Statistics
Matches: 146, Mismatches: 21, Indels: 20
0.78 0.11 0.11
Matches are distributed among these distances:
44 10 0.07
45 17 0.12
46 68 0.47
47 27 0.18
48 21 0.14
49 3 0.02
ACGTcount: A:0.22, C:0.30, G:0.19, T:0.29
Consensus pattern (46 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCTTACATCTCGAGGT
Found at i:33385720 original size:48 final size:48
Alignment explanation
Indices: 33385354--33385722 Score: 203
Period size: 46 Copynumber: 7.8 Consensus size: 48
33385344 GTATAATGCT
* * *
33385354 GATGCCATGTCCCAGACATGGTCTTACACT-G-GCTCGTCCATCAA-GTT
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCGT-C-TCAATGTC
* * * *** * *
33385401 GATGCCAAGTCCCAAACATGGTATTACACT-GACTATCAAAATCAAGGCC
1 GATGCCATGTCCCAAACATGGTCTTACACTAG-CTCTC-GTCTCAATGTC
* * * **
33385450 AACGCCATGTCCCAGAA-ATGGTCTTACACTAGCTCTCGCACATCCGTGTC
1 GATGCCATGTCCCA-AACATGGTCTTACACTAGCTCTCG-TC-TCAATGTC
* * *
33385500 GATGCCATGTCCCAAACATGGACTTACGCTAACTC-C-TCT-ATATGTGCC
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCGTCTCA-ATGT--C
* * * * * * *
33385548 GATGCCATGTCCCAGACATGGTCTTACTCT-G-ACACATCTC-GTAGTT
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCGTCTCAAT-GTC
* * * * * * *
33385594 GACG-CATGTCCCAGACAT-GTCTTACACTGGCT-TACCTCTCGAGGCC
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCT-CGTCTCAATGTC
*
33385640 GATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCGTCTCAATGTC
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCGTCTCAATGTC
*
33385686 GATGCCATGTCCCAAACATGGTCTTACGCTAGCTCTC
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCTC
33385723 ATAATGTGGT
Statistics
Matches: 246, Mismatches: 53, Indels: 45
0.72 0.15 0.13
Matches are distributed among these distances:
44 9 0.04
45 15 0.06
46 56 0.23
47 45 0.18
48 53 0.22
49 34 0.14
50 34 0.14
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.26
Consensus pattern (48 bp):
GATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCGTCTCAATGTC
Found at i:33385742 original size:47 final size:45
Alignment explanation
Indices: 33385455--33385765 Score: 165
Period size: 46 Copynumber: 6.6 Consensus size: 45
33385445 AGGCCAACGC
* **
33385455 CATGTCCCAGAAATGGTCTTACACTAGCTCTCGCACATCCGTGTCGATG
1 CATGTCCCAGACAT-GTCTTACACTAGCTCTCG---ATCAATGTCGATG
* * * * *
33385504 CCATGTCCCAAACATGGACTTACGCTAACTCCTCTAT--ATGTGCCGATG
1 -CATGTCCCAGACAT-GTCTTACACTAGCT-CTCGATCAATGT--CGATG
* * * *
33385552 CCATGTCCCAGACATGGTCTTACTCTGACACATCTCG-T--A-GTTGACG
1 -CATGTCCCAGACAT-GTCTTACACT-A-GC-TCTCGATCAATGTCGATG
* * * *
33385598 CATGTCCCAGACATGTCTTACACTGGCTTACCTC--TCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGC-T--CTCGATCAATGTCGATG
*
33385644 CATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAATGTCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTCG-ATCAATGTCGATG
* * *
33385690 CCATGTCCCAAACATGGTCTTACGCTAGCTCTC-AT-AATGTGGTTCATG
1 -CATGTCCCAGACAT-GTCTTACACTAGCTCTCGATCAATGTCG---ATG
33385738 CATGTCCCAGACATGTCTTACACTAGCT
1 CATGTCCCAGACATGTCTTACACTAGCT
33385766 TACAAATGAC
Statistics
Matches: 212, Mismatches: 30, Indels: 42
0.75 0.11 0.15
Matches are distributed among these distances:
42 2 0.01
43 4 0.02
44 12 0.06
45 22 0.10
46 59 0.28
47 26 0.12
48 51 0.24
49 3 0.01
50 29 0.14
51 4 0.02
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.28
Consensus pattern (45 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTCGATCAATGTCGATG
Found at i:33390022 original size:21 final size:20
Alignment explanation
Indices: 33389994--33390032 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
33389984 TATTCAGTAA
*
33389994 AAATATTTCAAAATACTTTC
1 AAATATTTCAAAACACTTTC
33390014 AAATCATTTCAAAACACTT
1 AAAT-ATTTCAAAACACTT
33390033 CATTTTGAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.46, C:0.18, G:0.00, T:0.36
Consensus pattern (20 bp):
AAATATTTCAAAACACTTTC
Found at i:33391088 original size:27 final size:26
Alignment explanation
Indices: 33391057--33391117 Score: 86
Period size: 27 Copynumber: 2.3 Consensus size: 26
33391047 CATACATCTC
33391057 ATAGGGGCATAACAGTCATTTTATCA
1 ATAGGGGCATAACAGTCATTTTATCA
**
33391083 TATAGGGGCATTTCAGTCATTTTATCA
1 -ATAGGGGCATAACAGTCATTTTATCA
33391110 ATTAGGGG
1 A-TAGGGG
33391118 GTCTAGGTAC
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
26 1 0.03
27 30 0.97
ACGTcount: A:0.30, C:0.13, G:0.23, T:0.34
Consensus pattern (26 bp):
ATAGGGGCATAACAGTCATTTTATCA
Found at i:33400279 original size:18 final size:18
Alignment explanation
Indices: 33400257--33400311 Score: 56
Period size: 23 Copynumber: 2.8 Consensus size: 18
33400247 ATAGCAAGTA
33400257 ACATAATCATGCAATTCC
1 ACATAATCATGCAATTCC
*
33400275 CCATAAACATCATTTGCAATTCC
1 ACAT--A-ATCA--TGCAATTCC
33400298 ACATAATCATGCAA
1 ACATAATCATGCAA
33400312 ATAGTAAGAC
Statistics
Matches: 30, Mismatches: 2, Indels: 10
0.71 0.05 0.24
Matches are distributed among these distances:
18 8 0.27
20 5 0.17
21 5 0.17
23 12 0.40
ACGTcount: A:0.40, C:0.27, G:0.05, T:0.27
Consensus pattern (18 bp):
ACATAATCATGCAATTCC
Found at i:33403320 original size:13 final size:14
Alignment explanation
Indices: 33403302--33403330 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
33403292 AGTATTTAAT
33403302 AATAAAT-AAACAA
1 AATAAATAAAACAA
33403315 AATAAATAAAACAA
1 AATAAATAAAACAA
33403329 AA
1 AA
33403331 ATCACATTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.79, C:0.07, G:0.00, T:0.14
Consensus pattern (14 bp):
AATAAATAAAACAA
Found at i:33413495 original size:13 final size:13
Alignment explanation
Indices: 33413477--33413516 Score: 71
Period size: 13 Copynumber: 3.1 Consensus size: 13
33413467 GCTCGATAGG
33413477 GACACGCCCGTGT
1 GACACGCCCGTGT
*
33413490 GACACGCCCATGT
1 GACACGCCCGTGT
33413503 GACACGCCCGTGT
1 GACACGCCCGTGT
33413516 G
1 G
33413517 CTATTTCCCA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.17, C:0.38, G:0.30, T:0.15
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:33427374 original size:20 final size:20
Alignment explanation
Indices: 33427351--33427392 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
33427341 AAGGACACGG
33427351 GCGTGTCCCAATACACACAA
1 GCGTGTCCCAATACACACAA
*
33427371 GCGTGTCCCAATGCACACAA
1 GCGTGTCCCAATACACACAA
33427391 GC
1 GC
33427393 ATTCTCGATT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.31, C:0.36, G:0.19, T:0.14
Consensus pattern (20 bp):
GCGTGTCCCAATACACACAA
Found at i:33428010 original size:21 final size:21
Alignment explanation
Indices: 33427984--33428024 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
33427974 TTCATTTCAC
33427984 AAACATT-TTCAAATTTCAAAT
1 AAACATTATTCAAA-TTCAAAT
33428005 AAACATTATTCAAATTCAAA
1 AAACATTATTCAAATTCAAA
33428025 CACATTGTCC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 13 0.68
22 6 0.32
ACGTcount: A:0.51, C:0.15, G:0.00, T:0.34
Consensus pattern (21 bp):
AAACATTATTCAAATTCAAAT
Found at i:33440014 original size:18 final size:18
Alignment explanation
Indices: 33439974--33440014 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
33439964 AGGCCATTCC
33439974 TGGGCTGTGTGGGCCACA
1 TGGGCTGTGTGGGCCACA
*
33439992 CGGGC-GTGTGGGCCCACA
1 TGGGCTGTGTGGG-CCACA
33440010 TGGGC
1 TGGGC
33440015 CCATATTCAC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.10, C:0.27, G:0.46, T:0.17
Consensus pattern (18 bp):
TGGGCTGTGTGGGCCACA
Found at i:33440984 original size:18 final size:18
Alignment explanation
Indices: 33440937--33440985 Score: 57
Period size: 18 Copynumber: 2.7 Consensus size: 18
33440927 TAGAATGATG
*
33440937 TTTTTGGAAATAAATAAC
1 TTTTTGGAAGTAAATAAC
33440955 TATTTT-GAAGTAAATAA-
1 T-TTTTGGAAGTAAATAAC
33440972 TTTTTGGATAGTAA
1 TTTTTGGA-AGTAA
33440986 TGCAAGTTTC
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
16 4 0.15
17 3 0.11
18 16 0.59
19 4 0.15
ACGTcount: A:0.41, C:0.02, G:0.14, T:0.43
Consensus pattern (18 bp):
TTTTTGGAAGTAAATAAC
Found at i:33442746 original size:43 final size:43
Alignment explanation
Indices: 33442643--33442749 Score: 146
Period size: 43 Copynumber: 2.5 Consensus size: 43
33442633 TATGTGTTCT
* * *
33442643 CGTGTAAGACCATGTCTAGGACATTGGCATCGATAAGTGATTA
1 CGTGTAAGACCACGTCTGGGACAGTGGCATCGATAAGTGATTA
*
33442686 CGTGTAAGACC-CTGTCTGGGACAGTGGCATCGATATGTGATTA
1 CGTGTAAGACCAC-GTCTGGGACAGTGGCATCGATAAGTGATTA
33442729 -GATGTAAGACCACGTCTGGGA
1 CG-TGTAAGACCACGTCTGGGA
33442750 TGTTGGGATT
Statistics
Matches: 57, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
42 1 0.02
43 55 0.96
44 1 0.02
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (43 bp):
CGTGTAAGACCACGTCTGGGACAGTGGCATCGATAAGTGATTA
Found at i:33443152 original size:18 final size:19
Alignment explanation
Indices: 33443125--33443164 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
33443115 CGGCCAAGAT
*
33443125 AAAGTTTATA-TATATATG
1 AAAGTATATATTATATATG
*
33443143 AAAGTATATATTGTATATG
1 AAAGTATATATTATATATG
33443162 AAA
1 AAA
33443165 CTGTAAGCTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 9 0.47
19 10 0.53
ACGTcount: A:0.47, C:0.00, G:0.12, T:0.40
Consensus pattern (19 bp):
AAAGTATATATTATATATG
Found at i:33446815 original size:26 final size:26
Alignment explanation
Indices: 33446798--33446884 Score: 120
Period size: 26 Copynumber: 3.3 Consensus size: 26
33446788 AATATTCTTT
33446798 TAGGGTAAATTACCGAAATACCCCTA
1 TAGGGTAAATTACCGAAATACCCCTA
* *
33446824 TAGGGTAAATTATCGAAATACCCCTG
1 TAGGGTAAATTACCGAAATACCCCTA
** *
33446850 TAGGGTAAATTACAAAAATACCCCTG
1 TAGGGTAAATTACCGAAATACCCCTA
*
33446876 TATGGTAAA
1 TAGGGTAAA
33446885 ATGACGTTTT
Statistics
Matches: 55, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 55 1.00
ACGTcount: A:0.39, C:0.18, G:0.17, T:0.25
Consensus pattern (26 bp):
TAGGGTAAATTACCGAAATACCCCTA
Found at i:33446843 original size:52 final size:52
Alignment explanation
Indices: 33446778--33446884 Score: 126
Period size: 52 Copynumber: 2.1 Consensus size: 52
33446768 CCAGTTTGTA
** * * **
33446778 AAATTACTGAAATATTCTTTTAGGGTAAATTACCGAAATACCCCTATAGGGT
1 AAATTACTGAAATACCCCTGTAGGGTAAATTACAAAAATACCCCTATAGGGT
* *
33446830 AAATTA-TCGAAATACCCCTGTAGGGTAAATTACAAAAATACCCCTGTATGGT
1 AAATTACT-GAAATACCCCTGTAGGGTAAATTACAAAAATACCCCTATAGGGT
33446882 AAA
1 AAA
33446885 ATGACGTTTT
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
51 1 0.02
52 45 0.98
ACGTcount: A:0.39, C:0.17, G:0.15, T:0.29
Consensus pattern (52 bp):
AAATTACTGAAATACCCCTGTAGGGTAAATTACAAAAATACCCCTATAGGGT
Found at i:33447166 original size:25 final size:25
Alignment explanation
Indices: 33447138--33447300 Score: 182
Period size: 25 Copynumber: 6.5 Consensus size: 25
33447128 TCTGATTATA
* * *
33447138 GCTTTGTGCCAATATGCTATTGAAG
1 GCTTTGTGCCGATATGATATTGATG
* * * *
33447163 GCTTTGTGCTGATATGCTATCGAAG
1 GCTTTGTGCCGATATGATATTGATG
* * *
33447188 GCTTCGTGCCGGTATGTTATTGATG
1 GCTTTGTGCCGATATGATATTGATG
*
33447213 GCTTTGTGCCGAAATGATATTGATG
1 GCTTTGTGCCGATATGATATTGATG
* * * *
33447238 GCTATGTGTCGATCTGTTATTGATG
1 GCTTTGTGCCGATATGATATTGATG
33447263 GCTTTGTGCCGATATGATATTGATG
1 GCTTTGTGCCGATATGATATTGATG
*
33447288 GCTATGTGCCGAT
1 GCTTTGTGCCGAT
33447301 CTGTTATCAA
Statistics
Matches: 115, Mismatches: 23, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 115 1.00
ACGTcount: A:0.19, C:0.15, G:0.28, T:0.38
Consensus pattern (25 bp):
GCTTTGTGCCGATATGATATTGATG
Found at i:33447218 original size:50 final size:50
Alignment explanation
Indices: 33447142--33447326 Score: 210
Period size: 50 Copynumber: 3.7 Consensus size: 50
33447132 ATTATAGCTT
* * * * * * *
33447142 TGTGCCAATATGCTATTGAAGGCTTTGTGCTGATATGCTATCGAAGGCT-
1 TGTGCCGATATGTTATTGATGGCTTTGTGCCGATATGATATTGATGGCTA
* *
33447191 TCGTGCCGGTATGTTATTGATGGCTTTGTGCCGAAATGATATTGATGGCTA
1 T-GTGCCGATATGTTATTGATGGCTTTGTGCCGATATGATATTGATGGCTA
* *
33447242 TGTGTCGATCTGTTATTGATGGCTTTGTGCCGATATGATATTGATGGCTA
1 TGTGCCGATATGTTATTGATGGCTTTGTGCCGATATGATATTGATGGCTA
* ** * *
33447292 TGTGCCGATCTGTTATCAATGTCTTTGTGCTGATA
1 TGTGCCGATATGTTATTGATGGCTTTGTGCCGATA
33447327 ATATTATTGT
Statistics
Matches: 116, Mismatches: 18, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
49 1 0.01
50 114 0.98
51 1 0.01
ACGTcount: A:0.19, C:0.15, G:0.27, T:0.39
Consensus pattern (50 bp):
TGTGCCGATATGTTATTGATGGCTTTGTGCCGATATGATATTGATGGCTA
Found at i:33447320 original size:25 final size:25
Alignment explanation
Indices: 33447138--33447321 Score: 161
Period size: 25 Copynumber: 7.4 Consensus size: 25
33447128 TCTGATTATA
* * * *
33447138 GCTTTGTGCCAATATGCTATTGAAG
1 GCTTTGTGCCGATCTGTTATTGATG
* * * * *
33447163 GCTTTGTGCTGATATGCTATCGAAG
1 GCTTTGTGCCGATCTGTTATTGATG
* * *
33447188 GCTTCGTGCCGGTATGTTATTGATG
1 GCTTTGTGCCGATCTGTTATTGATG
** *
33447213 GCTTTGTGCCGAAATGATATTGATG
1 GCTTTGTGCCGATCTGTTATTGATG
* *
33447238 GCTATGTGTCGATCTGTTATTGATG
1 GCTTTGTGCCGATCTGTTATTGATG
* *
33447263 GCTTTGTGCCGATATGATATTGATG
1 GCTTTGTGCCGATCTGTTATTGATG
* **
33447288 GCTATGTGCCGATCTGTTATCAATG
1 GCTTTGTGCCGATCTGTTATTGATG
*
33447313 TCTTTGTGC
1 GCTTTGTGC
33447322 TGATAATATT
Statistics
Matches: 130, Mismatches: 29, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 130 1.00
ACGTcount: A:0.18, C:0.15, G:0.27, T:0.39
Consensus pattern (25 bp):
GCTTTGTGCCGATCTGTTATTGATG
Found at i:33451284 original size:12 final size:12
Alignment explanation
Indices: 33451267--33451291 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
33451257 TTCAGCCATG
33451267 TTGATGATAGTT
1 TTGATGATAGTT
33451279 TTGATGATAGTT
1 TTGATGATAGTT
33451291 T
1 T
33451292 AAGCTGTGCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.00, G:0.24, T:0.52
Consensus pattern (12 bp):
TTGATGATAGTT
Found at i:33459841 original size:21 final size:21
Alignment explanation
Indices: 33459817--33459858 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
33459807 TTTCAGGTAC
33459817 ATTTACGTGTTCTGATACTGG
1 ATTTACGTGTTCTGATACTGG
33459838 ATTTACGTGTTCTGATACTGG
1 ATTTACGTGTTCTGATACTGG
33459859 CCTCGGTATG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.19, C:0.14, G:0.24, T:0.43
Consensus pattern (21 bp):
ATTTACGTGTTCTGATACTGG
Found at i:33462614 original size:27 final size:27
Alignment explanation
Indices: 33462583--33462635 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
33462573 GCATCAGATA
*
33462583 CTGATTCTG-TATTGGGCTTAGGCCCAT
1 CTGATTCTGTTAATGGGC-TAGGCCCAT
*
33462610 CTGATTTTGTTAATGGGCTAGGCCCA
1 CTGATTCTGTTAATGGGCTAGGCCCA
33462636 ACTGTTATTG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 16 0.70
28 7 0.30
ACGTcount: A:0.17, C:0.21, G:0.26, T:0.36
Consensus pattern (27 bp):
CTGATTCTGTTAATGGGCTAGGCCCAT
Found at i:33469179 original size:40 final size:40
Alignment explanation
Indices: 33469096--33469316 Score: 232
Period size: 40 Copynumber: 5.6 Consensus size: 40
33469086 ACCCAAGTAT
** * *
33469096 CTTCGGGAT-TTAG-CCGGATATAACCACTCGCAC-AAGGC
1 CTTCGGG-TCTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
33469134 CTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
33469174 CTTCGGGACTTAGCCCGGATATAATCGCTAGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
33469214 CTTCGGGTCTTAGCCCGGATATAGTAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* * * * *
33469254 CTTCGGATCTTAGTCTGGATATAGTCACTAGCATAAAAGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* * **
33469294 CTTCGAGACTTAGCTTGGATATA
1 CTTCGGGTCTTAGCCCGGATATA
33469317 ATTCAAATAA
Statistics
Matches: 152, Mismatches: 28, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
37 1 0.01
38 11 0.07
39 15 0.10
40 125 0.82
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:33477313 original size:40 final size:40
Alignment explanation
Indices: 33477269--33477442 Score: 226
Period size: 40 Copynumber: 4.3 Consensus size: 40
33477259 GCCTTTAGGT
* *
33477269 CTTAGCCCGGATATGGTCACTAGCATAAATGCCTTCGGGA
1 CTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGA
* * *
33477309 CTTAGCCCGGATATAATCGCTAGCACAAATGCCTTCGGGT
1 CTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGA
*
33477349 CTTAGCCCGGATATAG-CAACTCGCACAAATGCCTTC-GGA
1 CTTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCGGGA
* * * *
33477388 TCTTAGTCCGGATATAGTCACTAGCATAAAAGCCTTCGGTA
1 -CTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGA
33477429 CTTAGCCCGGATAT
1 CTTAGCCCGGATAT
33477443 CATTCGAATA
Statistics
Matches: 115, Mismatches: 15, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
39 3 0.03
40 109 0.95
41 3 0.03
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.25
Consensus pattern (40 bp):
CTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGA
Found at i:33477354 original size:80 final size:78
Alignment explanation
Indices: 33477223--33477442 Score: 239
Period size: 80 Copynumber: 2.8 Consensus size: 78
33477213 ACCCAAGTAT
* * * * * * *
33477223 CTTCGGGATTTAGCCAGATATAACCACTCGCAC-AAGGCCTTTAGGTCTTAGCCCGGATATGGTC
1 CTTCGGGACTTAGCCGGATATAATCACTAGCACAAAAGCC-TTCGGTCTTAGCCCGGATATAG-C
*
33477287 -ACTAGCATAAATGC
64 AACTAGCACAAATGC
* *
33477301 CTTCGGGACTTAGCCCGGATATAATCGCTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGC
1 CTTCGGGACTTAG-CCGGATATAATCACTAGCACAAAAGCCTTC-GGTCTTAGCCCGGATATAGC
*
33477366 AACTCGCACAAATGC
64 AACTAGCACAAATGC
* *
33477381 CTTC-GGATCTTAGTCCGGATATAGTCACTAGCATAAAAGCCTTCGGTACTTAGCCCGGATAT
1 CTTCGGGA-CTTAG-CCGGATATAATCACTAGCACAAAAGCCTTCGGT-CTTAGCCCGGATAT
33477443 CATTCGAATA
Statistics
Matches: 121, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
78 12 0.10
79 25 0.21
80 84 0.69
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.25
Consensus pattern (78 bp):
CTTCGGGACTTAGCCGGATATAATCACTAGCACAAAAGCCTTCGGTCTTAGCCCGGATATAGCAA
CTAGCACAAATGC
Found at i:33481551 original size:43 final size:43
Alignment explanation
Indices: 33481416--33481582 Score: 153
Period size: 43 Copynumber: 3.9 Consensus size: 43
33481406 TAAAGTTCGG
* * * * *
33481416 ACAATGCC-ATATCCCAGATATGGTCTTTCATGTTATCAC-AT
1 ACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAAT
* * * * * *
33481457 ATCGATGCCACTGTCCCAGATAGGGTCTTACACGAAATC-GAAT
1 A-CAATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAAT
*
33481500 A-ATGATGCCAATGTCCCAAACATGGTCTTACACGTAATCACAAT
1 ACA--ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAAT
* *
33481544 ACAATGCCAATGTCCCATACATGGTCTTACATGTAATCA
1 ACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCA
33481583 TATCTCGATA
Statistics
Matches: 101, Mismatches: 18, Indels: 12
0.77 0.14 0.09
Matches are distributed among these distances:
41 1 0.01
42 6 0.06
43 89 0.88
44 4 0.04
45 1 0.01
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (43 bp):
ACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAAT
Found at i:33484154 original size:48 final size:48
Alignment explanation
Indices: 33484078--33484216 Score: 154
Period size: 48 Copynumber: 2.9 Consensus size: 48
33484068 CACGTGGTAG
* * * *
33484078 GATGCCAATGCCA-GATATCCAGATATGGTCCTACATAGGATCAAAAATC
1 GATGCCAATGCCATG-T-CCCAGACATGGTCTTACATGGGATCAAAAATC
* * * * *
33484127 GATGCCAATTCTATGTCCCAGACATGGTCTTACACGGGATCACATATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCAAAAATC
* *
33484175 GATGCCAATGCCATGTCCTAAACATGGTCTTACATGGGATCA
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCA
33484217 CATAACCCTA
Statistics
Matches: 75, Mismatches: 14, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
48 62 0.83
49 12 0.16
50 1 0.01
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.25
Consensus pattern (48 bp):
GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCAAAAATC
Found at i:33484217 original size:48 final size:48
Alignment explanation
Indices: 33484102--33484220 Score: 157
Period size: 48 Copynumber: 2.5 Consensus size: 48
33484092 ATATCCAGAT
* * * * * * *
33484102 ATGGTCCTACATAGGATCAAAAATCGATGCCAATTCTATGTCCCAGAC
1 ATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAAAC
* *
33484150 ATGGTCTTACACGGGATCACATATCGATGCCAATGCCATGTCCTAAAC
1 ATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAAAC
33484198 ATGGTCTTACATGGGATCACATA
1 ATGGTCTTACATGGGATCACATA
33484221 ACCCTAATGT
Statistics
Matches: 61, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
48 61 1.00
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.26
Consensus pattern (48 bp):
ATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAAAC
Found at i:33502754 original size:48 final size:48
Alignment explanation
Indices: 33502637--33502861 Score: 178
Period size: 48 Copynumber: 4.8 Consensus size: 48
33502627 TGGTAGAATG
* * * * *
33502637 CCAATGCCATATCCTAGATATTGTCTTACATGGGATCACAGATCGA-A
1 CCAATGCCATATCCCAGATATGGTCTTACACGGGATCAAATATCGATA
* * * **
33502684 GC--TG--ATAGCCCA-ACTATGGTCTTACACGATG-TCTTATATCGATA
1 CCAATGCCATATCCCAGA-TATGGTCTTACACG-GGATCAAATATCGATA
* * *
33502728 CCAATGCCATATTCCAGATATGGTCTTACATGGGATCAAATATCGATG
1 CCAATGCCATATCCCAGATATGGTCTTACACGGGATCAAATATCGATA
* * * * *
33502776 CCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATG
1 CCAATGCCATATCCCAGATATGGTCTTACACGGGATCAAATATCGATA
* * *
33502824 CCAATGCCATGTCCCAGACATGGTCCTT-CATGGGATCA
1 CCAATGCCATATCCCAGATATGGT-CTTACACGGGATCA
33502862 CATAACCCTA
Statistics
Matches: 147, Mismatches: 21, Indels: 19
0.79 0.11 0.10
Matches are distributed among these distances:
42 1 0.01
43 26 0.18
44 3 0.02
45 2 0.01
46 2 0.01
47 2 0.01
48 107 0.73
49 4 0.03
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (48 bp):
CCAATGCCATATCCCAGATATGGTCTTACACGGGATCAAATATCGATA
Found at i:33502862 original size:48 final size:48
Alignment explanation
Indices: 33502719--33502865 Score: 233
Period size: 48 Copynumber: 3.1 Consensus size: 48
33502709 ACGATGTCTT
* * * * *
33502719 ATATCGATACCAATGCCATATTCCAGATATGGTCTTACATGGGATCAA
1 ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCAC
33502767 ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCAC
1 ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCAC
33502815 ATATCGATGCCAATGCCATGTCCCAGACATGGTCCTT-CATGGGATCAC
1 ATATCGATGCCAATGCCATGTCCCAGACATGGT-CTTACATGGGATCAC
33502863 ATA
1 ATA
33502866 ACCCTAATGT
Statistics
Matches: 93, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
48 90 0.97
49 3 0.03
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (48 bp):
ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCAC
Found at i:33508548 original size:29 final size:29
Alignment explanation
Indices: 33508506--33508585 Score: 135
Period size: 29 Copynumber: 2.8 Consensus size: 29
33508496 CTCGCTGCAA
*
33508506 TCTGGTGGCTTCGCCACATATATATATGT
1 TCTGGTGGCCTCGCCACATATATATATGT
33508535 TCTGGTGGCCTCGCCACATATATATATGT
1 TCTGGTGGCCTCGCCACATATATATATGT
*
33508564 TCTGGTGGCCTAGCCACA-ATAT
1 TCTGGTGGCCTCGCCACATATAT
33508586 TCGTCACAAT
Statistics
Matches: 49, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
28 4 0.08
29 45 0.92
ACGTcount: A:0.21, C:0.24, G:0.21, T:0.34
Consensus pattern (29 bp):
TCTGGTGGCCTCGCCACATATATATATGT
Found at i:33526077 original size:48 final size:46
Alignment explanation
Indices: 33526018--33526200 Score: 169
Period size: 46 Copynumber: 3.9 Consensus size: 46
33526008 CAGCCACATT
* *
33526018 ATGAGAGATAGTGTAAGACCATGTGTGGGACATGGCATCGGCATCGAG
1 ATGAGTGATAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATCGAG
*
33526066 ATGAGTGATAGTGTAAGACATGTCTGGGACATGCATCGACATCGAG
1 ATGAGTGATAGTGTAAGACATGTCTGGGACATGCATCGGCATCGAG
* * * * *
33526112 ACGTAAGT--CAGTGTAAGACATGTTTGGGATATGCATCGGC-TACGGG
1 A--TGAGTGATAGTGTAAGACATGTCTGGGACATGCATCGGCAT-CGAG
*
33526158 ATGATAGTCA-AG-GTAAGACCATGTCTGGGACATGGCATCGGCA
1 ATG--AGTGATAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCA
33526201 CCTTAATGAA
Statistics
Matches: 113, Mismatches: 12, Indels: 19
0.78 0.08 0.13
Matches are distributed among these distances:
44 1 0.01
45 1 0.01
46 55 0.49
47 27 0.24
48 29 0.26
ACGTcount: A:0.29, C:0.16, G:0.32, T:0.23
Consensus pattern (46 bp):
ATGAGTGATAGTGTAAGACATGTCTGGGACATGCATCGGCATCGAG
Found at i:33526187 original size:93 final size:95
Alignment explanation
Indices: 33526027--33526197 Score: 228
Period size: 93 Copynumber: 1.8 Consensus size: 95
33526017 TATGAGAGAT
*
33526027 AGTGTAAGACCATGTGTGGGACATGGCATCGGCATCGAGATGAGTGATAGTGTAAGACATGTCTG
1 AGTGTAAGACCATGTGTGGGACATGGCATCGGCATCGAGATGAGTCATAGTGTAAGACATGTCTG
33526092 GGACAT-GCATCGACATCGAGACGTAAGTC
66 GGACATGGCATCGACATCGAGACGTAAGTC
* * *
33526121 AGTGTAAGA-CATGTTTGGGATAT-GCATCGGC-TACGGGATGATAGTCA-AG-GTAAGACCATG
1 AGTGTAAGACCATGTGTGGGACATGGCATCGGCAT-CGAGATG--AGTCATAGTGTAAGA-CATG
33526181 TCTGGGACATGGCATCG
62 TCTGGGACATGGCATCG
33526198 GCACCTTAAT
Statistics
Matches: 68, Mismatches: 4, Indels: 10
0.83 0.05 0.12
Matches are distributed among these distances:
91 1 0.01
92 20 0.29
93 28 0.41
94 19 0.28
ACGTcount: A:0.28, C:0.16, G:0.32, T:0.23
Consensus pattern (95 bp):
AGTGTAAGACCATGTGTGGGACATGGCATCGGCATCGAGATGAGTCATAGTGTAAGACATGTCTG
GGACATGGCATCGACATCGAGACGTAAGTC
Found at i:33528868 original size:30 final size:30
Alignment explanation
Indices: 33528827--33528885 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
33528817 TCCGAGCCTT
*
33528827 GGGGAAAAAGTGTAAATATGTAAAAGTTTA
1 GGGGAAAAAGTGTAAATATGCAAAAGTTTA
* * *
33528857 GGGGTAAAAGTGTAATTTTGCAAAAGTTT
1 GGGGAAAAAGTGTAAATATGCAAAAGTTT
33528886 GAGTCAAGGA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.02, G:0.27, T:0.31
Consensus pattern (30 bp):
GGGGAAAAAGTGTAAATATGCAAAAGTTTA
Found at i:33529309 original size:55 final size:53
Alignment explanation
Indices: 33529222--33529476 Score: 236
Period size: 55 Copynumber: 4.8 Consensus size: 53
33529212 ATTAGGGTTT
*
33529222 AAGGATACCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGG-AATTGGTAA-GTTTCTAAGGC
* * * *
33529277 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGTT--TCTAAGGC
* * * * *
33529332 AAAGG-TTCCATGTAAGACCATGCCAAGCCAAGGCATTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGTTTC-TAAGGC
* * *
33529385 AGGGATACCATGTAAGACCATGTCGAGACATGGCAA-TGGTAAGTTTC-AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGG-AATTGGTAAGTTTCTAAGGC
* * * * *
33529434 AAGGATACCACGTAAAACCATGACAAGTCATGGAAATGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAG
33529477 GTACCGTGTA
Statistics
Matches: 166, Mismatches: 26, Indels: 22
0.78 0.12 0.10
Matches are distributed among these distances:
48 2 0.01
49 34 0.20
52 6 0.04
53 38 0.23
54 12 0.07
55 70 0.42
56 4 0.02
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.21
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGTTTCTAAGGC
Found at i:33529428 original size:108 final size:110
Alignment explanation
Indices: 33529229--33529429 Score: 300
Period size: 108 Copynumber: 1.8 Consensus size: 110
33529219 TTTAAGGATA
* *
33529229 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
1 CCATGTAAGACCATGCCAAGCCAAGGAAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
*
33529294 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTT
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTT
* * *
33529339 CCATGTAAGACCATGCCAAGCCAAGG-CATTGGTGA-G-TTCATAAGGCAGGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGCCAAGGAAATTGGTAAGGTTTC-TAAGGCAAGGATACCATGTAAG
* *
33529401 ACCATGTCGAGACATGGCAATGGTAAGTT
65 ACCATGTCAAGACATGGCAATGATAAGTT
33529430 TCAAAAGGAT
Statistics
Matches: 82, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
107 3 0.04
108 48 0.59
109 7 0.09
110 24 0.29
ACGTcount: A:0.34, C:0.18, G:0.26, T:0.22
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGCCAAGGAAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTT
Found at i:33529573 original size:23 final size:24
Alignment explanation
Indices: 33529547--33529591 Score: 83
Period size: 23 Copynumber: 1.9 Consensus size: 24
33529537 GTAAGGTAAG
33529547 GTAAGACAAGTT-ATACTAAAAAA
1 GTAAGACAAGTTCATACTAAAAAA
33529570 GTAAGACAAGTTCATACTAAAA
1 GTAAGACAAGTTCATACTAAAA
33529592 GAGAAAAGGT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
23 12 0.57
24 9 0.43
ACGTcount: A:0.53, C:0.11, G:0.13, T:0.22
Consensus pattern (24 bp):
GTAAGACAAGTTCATACTAAAAAA
Found at i:33532446 original size:13 final size:13
Alignment explanation
Indices: 33532428--33532453 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
33532418 GAAGTAATCA
33532428 CACACAGGCGTGT
1 CACACAGGCGTGT
33532441 CACACAGGCGTGT
1 CACACAGGCGTGT
33532454 TCCTGCTGAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.31, G:0.31, T:0.15
Consensus pattern (13 bp):
CACACAGGCGTGT
Found at i:33536117 original size:47 final size:47
Alignment explanation
Indices: 33536063--33536449 Score: 414
Period size: 47 Copynumber: 8.1 Consensus size: 47
33536053 TTAGGATTTT
* *
33536063 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCA
*
33536110 ATGTGATGAATGTGAACCTGTATATATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA--TGTGTATATA--TGTGATAAGGCCGAATGGCCA
** ** * * * *
33536161 ATGTGATGAATGTGAACATGCGTATGTCTGATAAGGCTGAATGGCAA
1 ATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCA
* *
33536208 ATGTGATGAATGTGAACCTGTATATATATGTGTGGTAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA--TGTGTATATA--TGTGATAAGGCCGAATGGCCA
** ** *
33536259 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCA
** ** *
33536306 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCA
** * *
33536353 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCA
* ** * *
33536400 ATATGATGAATGTGAACATGTATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCA
33536447 ATG
1 ATG
33536450 AGAAATGTGT
Statistics
Matches: 294, Mismatches: 38, Indels: 16
0.84 0.11 0.05
Matches are distributed among these distances:
47 205 0.70
49 21 0.07
51 68 0.23
ACGTcount: A:0.32, C:0.11, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCA
Found at i:33536167 original size:98 final size:97
Alignment explanation
Indices: 33536063--33536495 Score: 490
Period size: 98 Copynumber: 4.5 Consensus size: 97
33536053 TTAGGATTTT
33536063 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCAAATGTGATGAATGTGAACC
1 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCAAATGTGATGAATGTGAACC
33536128 TGTATATATATGTGTGATAAGGCCGAATGGCCA
66 TG-ATATATATGTGTGATAAGGCCGAATGGCCA
* * * *
33536161 ATGTGATGAATGTGAACATGCGTATGTCT--GATAAGGCTGAATGGCAAATGTGATGAATGTGAA
1 ATGTGATGAATGTG-A-ATGTGTATATATGAGATAAGGCCGAATGGCAAATGTGATGAATGTGAA
*
33536224 CCTGTATATATATGTGTGGTAAGGCCGAATGGCCA
64 CCTG-ATATATATGTGTGATAAGGCCGAATGGCCA
** ** * * *
33536259 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-C
1 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCAAATGTGATGAATGTGAACC
***
33536323 --ATGCGTATGTGTGATAAGGCCGAATGGCCA
66 TGATATATATGTGTGATAAGGCCGAATGGCCA
** * * * *
33536353 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATATGATGAATGTGAACA
1 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCAAATGTGATGAATGTGAACC
*
33536418 TG-TATATATGTG-G-TAAGGCCGAATGGCTA
66 TGATATATATGTGTGATAAGGCCGAATGGCCA
* * * * * * *
33536447 ATGAGA--AATGTGTATGAGATAGATATGAGGTAAAGCCGAATGGCTAATG
1 ATGTGATGAATGTGAATGTG-TATATATGAGATAAGGCCGAATGGCAAATG
33536496 CGAAACGTGT
Statistics
Matches: 289, Mismatches: 38, Indels: 21
0.83 0.11 0.06
Matches are distributed among these distances:
92 8 0.03
93 24 0.08
94 105 0.36
95 1 0.00
96 12 0.04
97 2 0.01
98 127 0.44
99 1 0.00
100 9 0.03
ACGTcount: A:0.33, C:0.10, G:0.30, T:0.27
Consensus pattern (97 bp):
ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCAAATGTGATGAATGTGAACC
TGATATATATGTGTGATAAGGCCGAATGGCCA
Found at i:33536212 original size:145 final size:144
Alignment explanation
Indices: 33536063--33536449 Score: 543
Period size: 145 Copynumber: 2.7 Consensus size: 144
33536053 TTAGGATTTT
*
33536063 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCAAATGTGATGAATGTGAACC
1 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
33536128 TGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTCTGAT
66 TG-ATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTCTGAT
*
33536193 AAGGCTGAATGGCAA
130 AAGGCCGAATGGCAA
* * *
33536208 ATGTGATGAATGTGAACCTGTATATATATGTGTGGTAAGGCCGAATGGCCAATGTGATGAATGTG
1 ATGTGATGAATGTGAA--TGTGTATATA--TGAGATAAGGCCGAATGGCCAATGTGATGAATGTG
*** *
33536273 AA-C--ATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGT
62 AACCTGATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTCT
*
33536335 GATAAGGCCGAATGGCCA
127 GATAAGGCCGAATGGCAA
** * * *
33536353 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATATGATGAATGTGAACA
1 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
*
33536418 TG-TATATATGTG-G-TAAGGCCGAATGGCTAATG
66 TGATATATATGTGTGATAAGGCCGAATGGCCAATG
33536450 AGAAATGTGT
Statistics
Matches: 213, Mismatches: 22, Indels: 18
0.84 0.09 0.07
Matches are distributed among these distances:
141 52 0.24
142 1 0.00
143 13 0.06
145 103 0.48
147 9 0.04
148 1 0.00
149 34 0.16
ACGTcount: A:0.32, C:0.11, G:0.29, T:0.27
Consensus pattern (144 bp):
ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
TGATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTCTGATA
AGGCCGAATGGCAA
Found at i:33536286 original size:23 final size:23
Alignment explanation
Indices: 33536259--33536333 Score: 57
Period size: 23 Copynumber: 3.2 Consensus size: 23
33536249 CGAATGGCCA
33536259 ATGTGATGAATGTGAACATGCGT
1 ATGTGATGAATGTGAACATGCGT
* * **
33536282 ATGTG-TGATAAG-G-CCGAATGGCCA
1 ATGTGATGA-ATGTGAAC--AT-GCGT
33536306 ATGTGATGAATGTGAACATGCGT
1 ATGTGATGAATGTGAACATGCGT
33536329 ATGTG
1 ATGTG
33536334 TGATAAGGCC
Statistics
Matches: 37, Mismatches: 8, Indels: 14
0.63 0.14 0.24
Matches are distributed among these distances:
21 1 0.03
22 4 0.11
23 16 0.43
24 11 0.30
25 4 0.11
26 1 0.03
ACGTcount: A:0.29, C:0.11, G:0.32, T:0.28
Consensus pattern (23 bp):
ATGTGATGAATGTGAACATGCGT
Found at i:33536559 original size:46 final size:46
Alignment explanation
Indices: 33536423--33536559 Score: 193
Period size: 46 Copynumber: 3.0 Consensus size: 46
33536413 GAACATGTAT
* *
33536423 ATATGTGGTAAGGCCGAATGGCTAATGAGAAATGTGTATGAGATAG
1 ATATGTGGTAAAGCCGAATGGCTAATGAGAAATGTGTATGAGATGG
* * *
33536469 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGAGAAATGTGTATGAGATGG
* * * *
33536515 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCGAATGGCTAATGAGAAATGTGTATGAGATG
33536560 TCTATATATA
Statistics
Matches: 80, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 80 1.00
ACGTcount: A:0.35, C:0.08, G:0.31, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCGAATGGCTAATGAGAAATGTGTATGAGATGG
Found at i:33546237 original size:51 final size:52
Alignment explanation
Indices: 33546161--33546264 Score: 165
Period size: 51 Copynumber: 2.0 Consensus size: 52
33546151 AAAGAAAATA
* *
33546161 GGCCATGTCAATTTGGTAGAATCGAAGCACGAGT-ACACGGGCAGACCACAT
1 GGCCATGTCAATTTGGTAGAATCGAAGCACGACTCACACGGGCAGAACACAT
* *
33546212 GGCCATGTCAATTTGGTAGAATCGAAGGACGACTCACACGGGTAGAACACAT
1 GGCCATGTCAATTTGGTAGAATCGAAGCACGACTCACACGGGCAGAACACAT
33546264 G
1 G
33546265 CCTGTGCCAT
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
51 32 0.67
52 16 0.33
ACGTcount: A:0.32, C:0.22, G:0.28, T:0.18
Consensus pattern (52 bp):
GGCCATGTCAATTTGGTAGAATCGAAGCACGACTCACACGGGCAGAACACAT
Found at i:33551999 original size:47 final size:47
Alignment explanation
Indices: 33551923--33552495 Score: 887
Period size: 47 Copynumber: 12.1 Consensus size: 47
33551913 CATACATATC
* * * * * **
33551923 TCACATTAGCCATTTGGCTTTACCACATATATACATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCA
* * *
33551970 TCACATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCA
*
33552017 TCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCA
33552064 TCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCA
* **
33552111 TCACATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCA
* * *
33552158 TCACATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCA
* ** *
33552205 TCACATTGGCCATTCGGCCTTATCACGCATATATATACAGGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCA--C--ACATACGCATGTTCACATTCA
*
33552256 TCACATTTGCCATTCGGCCTTATCACACATACGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCA
33552303 TCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCA
**
33552350 TCACATTGGCCATTCGGCCTTATCACACATATACATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCA
33552397 TCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCA
33552444 TCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCA
33552491 T-ACAT
1 TCACAT
33552496 AAAATCCTAA
Statistics
Matches: 493, Mismatches: 29, Indels: 9
0.93 0.05 0.02
Matches are distributed among these distances:
46 4 0.01
47 444 0.90
49 2 0.00
51 43 0.09
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.32
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCA
Found at i:33552137 original size:22 final size:22
Alignment explanation
Indices: 33552110--33552230 Score: 59
Period size: 22 Copynumber: 5.2 Consensus size: 22
33552100 GTTCACATTC
33552110 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
*** * *
33552132 ATCACATATATACATGTTC-ACATT
1 ATCACAT-TGGCCA--TTCGGCCTT
33552156 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * * *
33552179 ATCTCATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
33552203 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
33552226 ATCAC
1 ATCAC
33552231 GCATATATAT
Statistics
Matches: 69, Mismatches: 18, Indels: 24
0.62 0.16 0.22
Matches are distributed among these distances:
22 24 0.35
23 13 0.19
24 13 0.19
25 19 0.28
ACGTcount: A:0.25, C:0.29, G:0.12, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:33552354 original size:286 final size:285
Alignment explanation
Indices: 33551949--33552495 Score: 959
Period size: 286 Copynumber: 1.9 Consensus size: 285
33551939 GCTTTACCAC
* * * *
33551949 ATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACAT
1 ATATATACAGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACAT
*
33552014 TCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCATATTCATCACATTGGCCATTC
66 TCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTC
* * *
33552079 GGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATA
131 GGCCTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACA
* * *
33552144 CATGTTCACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCAC
196 CATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCAT-AC
33552209 ATTGGCCATTCGGCCTTATCACGCAT
260 ATTGGCCATTCGGCCTTATCACGCAT
*
33552235 ATATATACAGGTTCACATTCATCACATTTGCCATTCGGCCTTATCACACATACGCATGTTCACAT
1 ATATATACAGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACAT
33552300 TCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTC
66 TCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTC
* *
33552365 GGCCTTATCACACATATACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACG
131 GGCCTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACA
33552430 CATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATACA
196 CATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATACA
33552495 T
261 T
33552496 AAAATCCTAA
Statistics
Matches: 247, Mismatches: 14, Indels: 1
0.94 0.05 0.00
Matches are distributed among these distances:
285 4 0.02
286 243 0.98
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.32
Consensus pattern (285 bp):
ATATATACAGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACAT
TCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTC
GGCCTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACA
CATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATACA
TTGGCCATTCGGCCTTATCACGCAT
Found at i:33560134 original size:20 final size:20
Alignment explanation
Indices: 33560109--33560146 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
33560099 TTTCTAGTGA
*
33560109 TGGTATTCTGGTTGATCCCG
1 TGGTATTCGGGTTGATCCCG
33560129 TGGTATTCGGGTTGATCC
1 TGGTATTCGGGTTGATCC
33560147 TAGTAAAGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.11, C:0.18, G:0.32, T:0.39
Consensus pattern (20 bp):
TGGTATTCGGGTTGATCCCG
Found at i:33565517 original size:65 final size:65
Alignment explanation
Indices: 33565393--33565558 Score: 228
Period size: 65 Copynumber: 2.5 Consensus size: 65
33565383 ATATATTGAT
* * *
33565393 TTTTTTGAATTAATAGTTAATTTAATTTAATTAA-CTCTAATAACCCTAAACCCTAATTTAATTA
1 TTTTTTAAATTAATAGTTAATTTAA-TTAATTAACCTCTAAAAACCCTAAACACTAATTTAATTA
33565457 A
65 A
* * *
33565458 TTCTTTTAAATTAATAGTTAATTTAATTAATAAACCT-TAAAAATCCTAAACACTAATTTAATTG
1 TT-TTTTAAATTAATAGTTAATTTAATTAATTAACCTCTAAAAACCCTAAACACTAATTTAATTA
33565522 A
65 A
*
33565523 TTTTTTAAAATTAATAGTTAACTTAATTAATTAACC
1 TTTTTT-AAATTAATAGTTAATTTAATTAATTAACC
33565559 CTCAACCCTA
Statistics
Matches: 90, Mismatches: 8, Indels: 6
0.87 0.08 0.06
Matches are distributed among these distances:
64 4 0.04
65 62 0.69
66 24 0.27
ACGTcount: A:0.42, C:0.11, G:0.03, T:0.44
Consensus pattern (65 bp):
TTTTTTAAATTAATAGTTAATTTAATTAATTAACCTCTAAAAACCCTAAACACTAATTTAATTAA
Found at i:33565612 original size:7 final size:7
Alignment explanation
Indices: 33565600--33565683 Score: 88
Period size: 6 Copynumber: 12.4 Consensus size: 7
33565590 AAAACCATTA
*
33565600 AAACTCT
1 AAACCCT
*
33565607 AAACTCTT
1 AAAC-CCT
33565615 AAAACCCT
1 AAA-CCCT
33565623 AAA-CCT
1 AAACCCT
*
33565629 AAACCTT
1 AAACCCT
33565636 AAACCCT
1 AAACCCT
33565643 AAA-CCT
1 AAACCCT
33565649 AAACCCT
1 AAACCCT
33565656 -AACCCT
1 AAACCCT
33565662 AAA-CCT
1 AAACCCT
33565668 AAACCCT
1 AAACCCT
33565675 -AACCCT
1 AAACCCT
33565681 AAA
1 AAA
33565684 AAAGGGGGCA
Statistics
Matches: 65, Mismatches: 5, Indels: 14
0.77 0.06 0.17
Matches are distributed among these distances:
6 30 0.46
7 25 0.38
8 9 0.14
9 1 0.02
ACGTcount: A:0.45, C:0.36, G:0.00, T:0.19
Consensus pattern (7 bp):
AAACCCT
Found at i:33565638 original size:13 final size:13
Alignment explanation
Indices: 33565616--33565683 Score: 86
Period size: 13 Copynumber: 5.2 Consensus size: 13
33565606 TAAACTCTTA
33565616 AAACCCTAAACCT
1 AAACCCTAAACCT
*
33565629 AAACCTTAAACCCT
1 AAACCCTAAA-CCT
33565643 AAA-CCTAAACCCT
1 AAACCCTAAA-CCT
33565656 -AACCCTAAACCT
1 AAACCCTAAACCT
*
33565668 AAACCCTAACCCT
1 AAACCCTAAACCT
33565681 AAA
1 AAA
33565684 AAAGGGGGCA
Statistics
Matches: 49, Mismatches: 3, Indels: 6
0.84 0.05 0.10
Matches are distributed among these distances:
12 5 0.10
13 38 0.78
14 6 0.12
ACGTcount: A:0.46, C:0.38, G:0.00, T:0.16
Consensus pattern (13 bp):
AAACCCTAAACCT
Found at i:33565661 original size:19 final size:19
Alignment explanation
Indices: 33565617--33565683 Score: 116
Period size: 19 Copynumber: 3.5 Consensus size: 19
33565607 AAACTCTTAA
*
33565617 AACCCTAAACCTAAACCTT
1 AACCCTAAACCTAAACCCT
33565636 AAACCCTAAACCTAAACCCT
1 -AACCCTAAACCTAAACCCT
33565656 AACCCTAAACCTAAACCCT
1 AACCCTAAACCTAAACCCT
33565675 AACCCTAAA
1 AACCCTAAA
33565684 AAAGGGGGCA
Statistics
Matches: 46, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
19 28 0.61
20 18 0.39
ACGTcount: A:0.45, C:0.39, G:0.00, T:0.16
Consensus pattern (19 bp):
AACCCTAAACCTAAACCCT
Found at i:33566302 original size:20 final size:21
Alignment explanation
Indices: 33566237--33566302 Score: 59
Period size: 20 Copynumber: 3.2 Consensus size: 21
33566227 AAAAATAAAC
33566237 AAAAGA-ATCTAAATA-TTATA
1 AAAAGATAT-TAAATATTTATA
* *
33566257 AAAAGTATATTAAAAATTCA-A
1 AAAAG-ATATTAAATATTTATA
33566278 GAAAA-ATATTAAATATTTATA
1 -AAAAGATATTAAATATTTATA
33566299 AAAA
1 AAAA
33566303 TTCATAAAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 10
0.73 0.08 0.20
Matches are distributed among these distances:
20 21 0.57
21 8 0.22
22 8 0.22
ACGTcount: A:0.62, C:0.03, G:0.05, T:0.30
Consensus pattern (21 bp):
AAAAGATATTAAATATTTATA
Found at i:33568867 original size:93 final size:93
Alignment explanation
Indices: 33568708--33568879 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
33568698 CGCCCATAAG
* * * *
33568708 CGAACTCGGACTCAACTCAATGAACTCGGGCGTTCGCATCCATGAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAACTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
33568773 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
** *
33568801 CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAACTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
33568866 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
33568880 TCAACCATCC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAACTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:33568869 original size:46 final size:46
Alignment explanation
Indices: 33568701--33568876 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
33568691 TGTAACCCGC
* ** * * *
33568701 CCATAAGCGAACTCGGACTCAACTCAATGAACTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
* * * *
33568747 CCATGAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCAT
*
33568797 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
*
33568840 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
33568877 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 60 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
Found at i:33568895 original size:46 final size:45
Alignment explanation
Indices: 33568752--33568895 Score: 136
Period size: 46 Copynumber: 3.1 Consensus size: 45
33568742 CGCATCCATG
33568752 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATCT
* * * *
33568799 CA-CGAACTCGGACTCAACTCAACGAGTTCGGACAT-TTGCATCCAT-A
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCT-CAACCATCT
33568845 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT-CT
33568891 AGTGA
1 AGTGA
33568896 CATGTCACTT
Statistics
Matches: 79, Mismatches: 8, Indels: 20
0.74 0.07 0.19
Matches are distributed among these distances:
44 8 0.10
45 2 0.03
46 33 0.42
47 31 0.39
48 1 0.01
49 3 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCT
Found at i:33576137 original size:43 final size:42
Alignment explanation
Indices: 33576042--33576144 Score: 118
Period size: 43 Copynumber: 2.4 Consensus size: 42
33576032 GGTTACTGAT
* *
33576042 ATTACGTGTAAGACCATATCTAGGATATGGCATCGATATGAG
1 ATTACGTGTAAGACCATAGCTAGGATATGGCATCGATACGAG
* * * *
33576084 ACTT-TGTGTAAAACCATAGCTGGGCTATTGGCATCGATACGAG
1 A-TTACGTGTAAGACCATAGCTAGGATA-TGGCATCGATACGAG
*
33576127 ATTACATGTAAGACCATA
1 ATTACGTGTAAGACCATA
33576145 TTTGGGATAT
Statistics
Matches: 49, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
42 21 0.43
43 28 0.57
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.28
Consensus pattern (42 bp):
ATTACGTGTAAGACCATAGCTAGGATATGGCATCGATACGAG
Found at i:33579887 original size:16 final size:16
Alignment explanation
Indices: 33579863--33579895 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
33579853 AAAATAGGTT
*
33579863 TAGATAAGACTTACTC
1 TAGAAAAGACTTACTC
33579879 TAGAAAAGACTTACTC
1 TAGAAAAGACTTACTC
33579895 T
1 T
33579896 TGGAACTTGG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.39, C:0.18, G:0.12, T:0.30
Consensus pattern (16 bp):
TAGAAAAGACTTACTC
Found at i:33589508 original size:47 final size:47
Alignment explanation
Indices: 33589438--33589690 Score: 364
Period size: 47 Copynumber: 5.4 Consensus size: 47
33589428 CCCTTCAGGA
* * *
33589438 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* * * *
33589485 CTTATCACATATATACACCTTCACATCCATCACATCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* * *
33589532 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTAAGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
33589579 CTTATCTCATATACACACTTTCACATTCATCACATTGGCCATTCA-GC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATT-AGGC
*
33589626 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
33589673 CTTATCACATATACACAC
1 CTTATCACATATATACAC
33589691 CTTGTACATC
Statistics
Matches: 188, Mismatches: 16, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
46 1 0.01
47 186 0.99
48 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.07, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
Found at i:33594096 original size:49 final size:49
Alignment explanation
Indices: 33594042--33594166 Score: 205
Period size: 49 Copynumber: 2.6 Consensus size: 49
33594032 CTGGTACGCA
* *
33594042 TAGTAGCCTGCACATAGTACTACACATGCGACCAATTATCCGGTACACC
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACC
* **
33594091 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACATG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACC
33594140 TAGTAGCCTGCACTTAGTACTACACAC
1 TAGTAGCCTGCACTTAGTACTACACAC
33594167 CTGATACACG
Statistics
Matches: 71, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
49 71 1.00
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACC
Found at i:33594189 original size:37 final size:37
Alignment explanation
Indices: 33594134--33594208 Score: 132
Period size: 37 Copynumber: 2.0 Consensus size: 37
33594124 AATTATCCGG
*
33594134 TACATGTAGTAGCCTGCACTTAGTACTACACACCTGA
1 TACACGTAGTAGCCTGCACTTAGTACTACACACCTGA
*
33594171 TACACGTAGTAGCCTGCACTTAGTACTACACACGTGA
1 TACACGTAGTAGCCTGCACTTAGTACTACACACCTGA
33594208 T
1 T
33594209 CACAGTTTTT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (37 bp):
TACACGTAGTAGCCTGCACTTAGTACTACACACCTGA
Found at i:33596383 original size:15 final size:15
Alignment explanation
Indices: 33596335--33596401 Score: 75
Period size: 15 Copynumber: 4.5 Consensus size: 15
33596325 TAAAGATAAT
*
33596335 AAGAAAACC-GAATA
1 AAGAAACCCAGAATA
*
33596349 AAGAAATCCA-AGATA
1 AAGAAACCCAGA-ATA
*
33596364 GAGAAACCCAGAATA
1 AAGAAACCCAGAATA
*
33596379 AAGAAACCCAGAGTA
1 AAGAAACCCAGAATA
33596394 AAGAAACC
1 AAGAAACC
33596402 TAAGATACGA
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
14 9 0.20
15 35 0.78
16 1 0.02
ACGTcount: A:0.58, C:0.18, G:0.16, T:0.07
Consensus pattern (15 bp):
AAGAAACCCAGAATA
Found at i:33599464 original size:49 final size:49
Alignment explanation
Indices: 33599410--33599534 Score: 214
Period size: 49 Copynumber: 2.6 Consensus size: 49
33599400 CTGGTACGCA
* *
33599410 TAGTAGCCTGCACATAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACG
* *
33599459 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACATG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACG
33599508 TAGTAGCCTGCACTTAGTACTACACAC
1 TAGTAGCCTGCACTTAGTACTACACAC
33599535 CTTATACACG
Statistics
Matches: 72, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
49 72 1.00
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACG
Found at i:33601048 original size:40 final size:40
Alignment explanation
Indices: 33600941--33601104 Score: 192
Period size: 40 Copynumber: 4.2 Consensus size: 40
33600931 AAACCAAGTA
* * *
33600941 CCTTCGGGATTTAA-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAACCCGGTTATAG-TAACTCGCACAAATG
* * *
33600980 TCTTCGAGAC-TAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAACCCGGTTATAGTAACTCGCACAAATG
33601019 CCTTCGGGACTTAACCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAACCCGGTTATAGTAACTCGCACAAATG
* * * *
33601059 CCTTCGGGACTTAGCCCGG-AATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAACCCGGTTA-TAGTAACTCGCACAAATG
33601099 CCTTCG
1 CCTTCG
33601105 TTATCATCCG
Statistics
Matches: 108, Mismatches: 13, Indels: 7
0.84 0.10 0.05
Matches are distributed among these distances:
38 3 0.03
39 37 0.34
40 68 0.63
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
CCTTCGGGACTTAACCCGGTTATAGTAACTCGCACAAATG
Found at i:33604026 original size:20 final size:21
Alignment explanation
Indices: 33603981--33604026 Score: 76
Period size: 21 Copynumber: 2.2 Consensus size: 21
33603971 AGTTGCCTAA
*
33603981 CATAATTTAAAACCTCATATT
1 CATATTTTAAAACCTCATATT
33604002 CATATTTTAAAACCTCATATT
1 CATATTTTAAAACCTCATATT
33604023 -ATAT
1 CATAT
33604027 CATAAAACAC
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 4 0.17
21 20 0.83
ACGTcount: A:0.41, C:0.17, G:0.00, T:0.41
Consensus pattern (21 bp):
CATATTTTAAAACCTCATATT
Found at i:33604032 original size:20 final size:21
Alignment explanation
Indices: 33603988--33604034 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
33603978 TAACATAATT
**
33603988 TAAAACCTCATATTCATATTT
1 TAAAACCTCATATTCATATCA
33604009 TAAAACCTCATATT-ATATCA
1 TAAAACCTCATATTCATATCA
33604029 TAAAAC
1 TAAAAC
33604035 ACAAAAATAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 10 0.42
21 14 0.58
ACGTcount: A:0.45, C:0.19, G:0.00, T:0.36
Consensus pattern (21 bp):
TAAAACCTCATATTCATATCA
Found at i:33606422 original size:46 final size:45
Alignment explanation
Indices: 33606369--33606532 Score: 142
Period size: 46 Copynumber: 3.6 Consensus size: 45
33606359 ATTGTGAGCT
33606369 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCC-CATTATGAGAGTC
* *
33606415 AGTGTAAGACCATGTCTGGGACATGGCATTGG--CATTAAGACGAGT-
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCCATTATGA-GAGTC
* * ** *
33606460 -GCTATAAGACATGTCTGGGACATGCATCAGCCTCGAGACAT-A-AGCC
1 AG-TGTAAGACATGTCTGGGACATGCATCGGCC-C-A-TTATGAGAGTC
*
33606506 AGTGTAAGACATGTTTGGGACATGCAT
1 AGTGTAAGACATGTCTGGGACATGCAT
33606533 AAACTACGAG
Statistics
Matches: 96, Mismatches: 11, Indels: 22
0.74 0.09 0.17
Matches are distributed among these distances:
43 5 0.05
44 15 0.16
45 15 0.16
46 37 0.39
47 17 0.18
48 7 0.07
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCCATTATGAGAGTC
Found at i:33606543 original size:46 final size:44
Alignment explanation
Indices: 33606464--33606579 Score: 135
Period size: 46 Copynumber: 2.5 Consensus size: 44
33606454 ACGAGTGCTA
**
33606464 TAAGACATGTCTGGGACATGCATCAGCCTCGAGACATAAGCCAGTG
1 TAAGACATGTCTGGGACATGCATCAAACTCGAG--ATAAGCCAGTG
* **
33606510 TAAGACATGTTTGGGACATGCAT-AAACTACGAGATGTGCCAGTG
1 TAAGACATGTCTGGGACATGCATCAAACT-CGAGATAAGCCAGTG
33606554 TAAGACCATGTCTGGGACATGACATC
1 TAAGA-CATGTCTGGGACATG-CATC
33606580 GGCACATATA
Statistics
Matches: 60, Mismatches: 6, Indels: 7
0.82 0.08 0.10
Matches are distributed among these distances:
44 14 0.23
45 17 0.28
46 29 0.48
ACGTcount: A:0.31, C:0.21, G:0.26, T:0.22
Consensus pattern (44 bp):
TAAGACATGTCTGGGACATGCATCAAACTCGAGATAAGCCAGTG
Found at i:33621378 original size:27 final size:27
Alignment explanation
Indices: 33621324--33621380 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 27
33621314 ACATCTCATA
*
33621324 GGGCATATCAGTCATTTTACCATGTAG
1 GGGCATATCAGTCATTTTACAATGTAG
*
33621351 GGGCATTTCAGTCATTTTATCAAT-TAG
1 GGGCATATCAGTCATTTTA-CAATGTAG
33621378 GGG
1 GGG
33621381 GTCTAGGTAC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
27 24 0.89
28 3 0.11
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.35
Consensus pattern (27 bp):
GGGCATATCAGTCATTTTACAATGTAG
Found at i:33624244 original size:29 final size:29
Alignment explanation
Indices: 33624202--33624260 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
33624192 GAAAGAAAAA
33624202 GGGAGTAAGCTTTAAATCTTAGTAAGTTT
1 GGGAGTAAGCTTTAAATCTTAGTAAGTTT
33624231 GGGAGTAAGCTTTAAATCTTAGTAAGTTT
1 GGGAGTAAGCTTTAAATCTTAGTAAGTTT
33624260 G
1 G
33624261 CATGCAAATA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.31, C:0.07, G:0.25, T:0.37
Consensus pattern (29 bp):
GGGAGTAAGCTTTAAATCTTAGTAAGTTT
Found at i:33627188 original size:42 final size:43
Alignment explanation
Indices: 33627088--33627235 Score: 133
Period size: 43 Copynumber: 3.4 Consensus size: 43
33627078 TGTAATTTCA
* * * *
33627088 TGTAAGACCATGT-TAGGGACATTGGCATCGAT-TTGAGATCTATG
1 TGTAAGACCATGTCT-GGGAAAGTGGCATCGATATT-TGAT-TACG
* * *
33627132 TGTAAGACCATGTCTTGGACA-TCGGCATCG-TATTTGATTTCG
1 TGTAAGACCATGTCTGGGAAAGT-GGCATCGATATTTGATTACG
* * *
33627174 TGTAAGACCCTGTCTGGGAAAGTGGCATTGATATTTGATTACA
1 TGTAAGACCATGTCTGGGAAAGTGGCATCGATATTTGATTACG
*
33627217 TGTAAGACCACGTCTGGGA
1 TGTAAGACCATGTCTGGGA
33627236 TATTGGCTTT
Statistics
Matches: 87, Mismatches: 12, Indels: 11
0.79 0.11 0.10
Matches are distributed among these distances:
42 26 0.30
43 33 0.38
44 27 0.31
45 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.32
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGAAAGTGGCATCGATATTTGATTACG
Found at i:33627550 original size:23 final size:23
Alignment explanation
Indices: 33627524--33627570 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
33627514 TATTTGTATA
*
33627524 TGGCTTACTAAACTTTTGAAAGC
1 TGGCCTACTAAACTTTTGAAAGC
*
33627547 TGGCCTACTAAGCTTTTGAAAGC
1 TGGCCTACTAAACTTTTGAAAGC
33627570 T
1 T
33627571 TACTTTGTGT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34
Consensus pattern (23 bp):
TGGCCTACTAAACTTTTGAAAGC
Found at i:33633346 original size:43 final size:43
Alignment explanation
Indices: 33633290--33633437 Score: 163
Period size: 43 Copynumber: 3.4 Consensus size: 43
33633280 TATCGAGTTG
** *
33633290 TGATTACAAGTAAGACCATGTCTGGGACATTGGCATTG-TATT
1 TGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTTATT
*
33633332 GTGGTTACGTGTAAGACCATGTCTGGGACATTGGCATCGTTATT
1 -TGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTTATT
* * * ** * *
33633376 TGATTTCGTGTAAGACCCTGTCTGGGACAGTGATATCGATATG
1 TGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTTATT
* *
33633419 TGATAACATGTAAGACCAT
1 TGATTACGTGTAAGACCAT
33633438 ATCTAGGATA
Statistics
Matches: 88, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
43 84 0.95
44 4 0.05
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.32
Consensus pattern (43 bp):
TGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTTATT
Found at i:33641563 original size:16 final size:16
Alignment explanation
Indices: 33641542--33641574 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
33641532 AAGAATTCAG
*
33641542 ATTTAGATTGGGGGAA
1 ATTTAGATCGGGGGAA
33641558 ATTTAGATCGGGGGAA
1 ATTTAGATCGGGGGAA
33641574 A
1 A
33641575 AACAAGGTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.33, C:0.03, G:0.36, T:0.27
Consensus pattern (16 bp):
ATTTAGATCGGGGGAA
Found at i:33645358 original size:51 final size:51
Alignment explanation
Indices: 33645292--33645389 Score: 180
Period size: 51 Copynumber: 1.9 Consensus size: 51
33645282 TATTAACATT
33645292 AACATGCTTTCTCATCAATTTGGCAATTTTACCTATACACATACACTTAAA
1 AACATGCTTTCTCATCAATTTGGCAATTTTACCTATACACATACACTTAAA
33645343 AACATGCGTTT-TCATCAATTTGGCAATTTTACCTATACACATACACT
1 AACATGC-TTTCTCATCAATTTGGCAATTTTACCTATACACATACACT
33645390 CAATCAAACA
Statistics
Matches: 46, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
51 43 0.93
52 3 0.07
ACGTcount: A:0.34, C:0.23, G:0.07, T:0.36
Consensus pattern (51 bp):
AACATGCTTTCTCATCAATTTGGCAATTTTACCTATACACATACACTTAAA
Found at i:33650387 original size:28 final size:29
Alignment explanation
Indices: 33650356--33650415 Score: 68
Period size: 29 Copynumber: 2.1 Consensus size: 29
33650346 GATTTTGAGT
*
33650356 AAAAATGCATATT-AGGGATTAAATTGTG
1 AAAAATGCAAATTCAGGGATTAAATTGTG
* * * *
33650384 AAAAGTGTAAATTCAGGGGTTGAATTGTG
1 AAAAATGCAAATTCAGGGATTAAATTGTG
33650413 AAA
1 AAA
33650416 TAAATGAAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
28 10 0.38
29 16 0.62
ACGTcount: A:0.42, C:0.03, G:0.25, T:0.30
Consensus pattern (29 bp):
AAAAATGCAAATTCAGGGATTAAATTGTG
Found at i:33653718 original size:77 final size:77
Alignment explanation
Indices: 33653627--33653771 Score: 238
Period size: 77 Copynumber: 1.9 Consensus size: 77
33653617 TTCATTAACG
* * *
33653627 GTCACATAATTAAAGTAATGATCAAAGATAGATTTTACTAGTTAAAAAATTTAATTGATGTAATT
1 GTCACATAATTAAAGTAATCATCAAAGATAGATTTTACTAGTTAAAAAAATTAATTGATGCAATT
33653692 TTTAAATTAATA
66 TTTAAATTAATA
*
33653704 GTCACATCAA-TAAAGTAATCATCAAAGATAGATTTTATTAGTTAAAAAAATTAATTGATGCAAT
1 GTCACAT-AATTAAAGTAATCATCAAAGATAGATTTTACTAGTTAAAAAAATTAATTGATGCAAT
33653768 TTTT
65 TTTT
33653772 TTAATTTGAG
Statistics
Matches: 63, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
77 61 0.97
78 2 0.03
ACGTcount: A:0.45, C:0.07, G:0.10, T:0.38
Consensus pattern (77 bp):
GTCACATAATTAAAGTAATCATCAAAGATAGATTTTACTAGTTAAAAAAATTAATTGATGCAATT
TTTAAATTAATA
Found at i:33655577 original size:15 final size:15
Alignment explanation
Indices: 33655545--33655580 Score: 56
Period size: 15 Copynumber: 2.4 Consensus size: 15
33655535 AAAATAAATA
33655545 TTATTTAAATTTATT
1 TTATTTAAATTTATT
33655560 TTATTTAAATATTA-T
1 TTATTTAAAT-TTATT
33655575 TTATTT
1 TTATTT
33655581 TTATGATAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 17 0.85
16 3 0.15
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (15 bp):
TTATTTAAATTTATT
Found at i:33655599 original size:24 final size:21
Alignment explanation
Indices: 33655553--33655608 Score: 69
Period size: 22 Copynumber: 2.6 Consensus size: 21
33655543 TATTATTTAA
*
33655553 ATTTA-TTTTATTTAAATATT
1 ATTTATTTTTATATAAATATT
33655573 ATTTATTTTTATGATAAATATT
1 ATTTATTTTTAT-ATAAATATT
33655595 ATATTATGTTTTAT
1 AT-TTAT-TTTTAT
33655609 TTTTAAATTT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
20 5 0.16
21 6 0.19
22 10 0.32
23 4 0.13
24 6 0.19
ACGTcount: A:0.34, C:0.00, G:0.04, T:0.62
Consensus pattern (21 bp):
ATTTATTTTTATATAAATATT
Found at i:33655757 original size:6 final size:6
Alignment explanation
Indices: 33655731--33655778 Score: 51
Period size: 6 Copynumber: 8.0 Consensus size: 6
33655721 AAAGTATAAT
* * * * *
33655731 AATTAA AATTGA CATTAA AATTTA AATTAA AATTAG AATTAG AATTAA
1 AATTAA AATTAA AATTAA AATTAA AATTAA AATTAA AATTAA AATTAA
33655779 CTTGACACAA
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.56, C:0.02, G:0.06, T:0.35
Consensus pattern (6 bp):
AATTAA
Found at i:33663450 original size:42 final size:40
Alignment explanation
Indices: 33663388--33663500 Score: 138
Period size: 42 Copynumber: 2.7 Consensus size: 40
33663378 CGTTTACTTG
*
33663388 ATGCCATAGTCCAACTATGGTCTTACA-TAAAGTCTCATATCC
1 ATGCCAT-GTCCAAC-ATGGTCTTACACGAAA-TCTCATATCC
*
33663430 ATGCCATGTCCTAGACATGGTCTTACACGAAATCTCATATCG
1 ATGCCATGTCC-A-ACATGGTCTTACACGAAATCTCATATCC
33663472 ATGCCATGTCCCAAACATGGTCTTACACG
1 ATGCCATGT-CC-AACATGGTCTTACACG
33663501 TATCACAATG
Statistics
Matches: 64, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
41 4 0.06
42 52 0.81
43 8 0.12
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.28
Consensus pattern (40 bp):
ATGCCATGTCCAACATGGTCTTACACGAAATCTCATATCC
Found at i:33670220 original size:43 final size:42
Alignment explanation
Indices: 33670152--33670308 Score: 138
Period size: 43 Copynumber: 3.7 Consensus size: 42
33670142 AGTTCGTACA
* * **
33670152 ATGCCAATGTCCTAGACGTGGTCTTACATGTAATCAAATATTT
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCAAATA-CG
* * * *
33670195 ATGCCACTGTCCCAGATA-GGTTCTTACATGAAATCATATACG
1 ATGCCAATGTCCCAGACATGG-TCTTACATGTAATCAAATACG
*
33670237 ATGCCAATGTCCCAGACATGGTCTTACACGTAAATCACAA-ATCG
1 ATGCCAATGTCCCAGACATGGTCTTACATGT-AATCA-AATA-CG
** * *
33670281 ATGCCAACATCCCAGACGTGGTTTTACA
1 ATGCCAATGTCCCAGACATGGTCTTACA
33670309 CGAAATAAAT
Statistics
Matches: 92, Mismatches: 17, Indels: 9
0.78 0.14 0.08
Matches are distributed among these distances:
42 26 0.28
43 39 0.42
44 27 0.29
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.28
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACATGGTCTTACATGTAATCAAATACG
Found at i:33676828 original size:42 final size:43
Alignment explanation
Indices: 33676749--33676843 Score: 115
Period size: 42 Copynumber: 2.2 Consensus size: 43
33676739 TCTCAGACGT
* *
33676749 GGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAGAA-AG
1 GGTCTTACACGAAATCAAATATCGATGCCACTGTCCCA-AACAG
* *
33676792 GGTCTTACACGAAATCATATA-CGATGCC-CATGTCCCAAACAT
1 GGTCTTACACGAAATCAAATATCGATGCCAC-TGTCCCAAACAG
33676834 GGTCTTACAC
1 GGTCTTACAC
33676844 ATAAATCACA
Statistics
Matches: 46, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
41 3 0.07
42 25 0.54
43 18 0.39
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (43 bp):
GGTCTTACACGAAATCAAATATCGATGCCACTGTCCCAAACAG
Found at i:33681753 original size:27 final size:27
Alignment explanation
Indices: 33681736--33681913 Score: 133
Period size: 27 Copynumber: 6.6 Consensus size: 27
33681726 ATATTAAGTC
33681736 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
* *
33681763 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
* * *
33681791 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTCAGTGCTATATAATCAACT
* *** ** *
33681818 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTCAGTGCTATATAATCAACT
* * **
33681845 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTCAGTGCTAT-ATAATCAACT
* * * * *
33681872 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTCAGTGCTATATAATCAACT
*
33681899 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
33681914 GTACAATTTA
Statistics
Matches: 131, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
27 104 0.79
28 27 0.21
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:33681875 original size:54 final size:54
Alignment explanation
Indices: 33681736--33681912 Score: 214
Period size: 54 Copynumber: 3.3 Consensus size: 54
33681726 ATATTAAGTC
* * *
33681736 CGCACACTCAGTGCTAT-ATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGC-ATCATAATCAACTCGCACACTTAGTGCAACATAGTCAAA-T
* ** * *
33681791 CGCACACTTAGTGC-TACATAGTCAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCAT-CATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
* **
33681845 CGCACACTTAGTGCATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCATCATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
33681899 CGCACACTTAGTGC
1 CGCACACTTAGTGC
33681913 TGTACAATTT
Statistics
Matches: 105, Mismatches: 14, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
53 1 0.01
54 60 0.57
55 44 0.42
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.27
Consensus pattern (54 bp):
CGCACACTTAGTGCATCATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
Found at i:33681902 original size:81 final size:82
Alignment explanation
Indices: 33681757--33681912 Score: 235
Period size: 81 Copynumber: 1.9 Consensus size: 82
33681747 TGCTATATAA
* *
33681757 TCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTAGTGCTACATAGTCAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTAGTGCAACATAGTCAAATCGCA
33681822 CACTTAGTGCCGCATGG
66 CACTTAGTGCCGCATGG
* * **
33681839 TCAATTCGCACACTTAGTGC-ATCATATTC-ATTTCGCACACTTAGTGCAACATAGTCAAATCGC
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAACTCGCACACTTAGTGCAACATAGTCAAATCGC
33681902 ACACTTAGTGC
65 ACACTTAGTGC
33681913 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 42 0.63
82 25 0.37
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (82 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTAGTGCAACATAGTCAAATCGCA
CACTTAGTGCCGCATGG
Found at i:33689643 original size:27 final size:27
Alignment explanation
Indices: 33689626--33689803 Score: 133
Period size: 27 Copynumber: 6.6 Consensus size: 27
33689616 ATATTAAGTC
33689626 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
* *
33689653 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
* * *
33689681 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTCAGTGCTATATAATCAACT
* *** ** *
33689708 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTCAGTGCTATATAATCAACT
* * **
33689735 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTCAGTGCTAT-ATAATCAACT
* * * * *
33689762 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTCAGTGCTATATAATCAACT
*
33689789 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
33689804 GTACAATTTA
Statistics
Matches: 131, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
27 104 0.79
28 27 0.21
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:33689765 original size:54 final size:54
Alignment explanation
Indices: 33689626--33689802 Score: 214
Period size: 54 Copynumber: 3.3 Consensus size: 54
33689616 ATATTAAGTC
* * *
33689626 CGCACACTCAGTGCTAT-ATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGC-ATCATAATCAACTCGCACACTTAGTGCAACATAGTCAAA-T
* ** * *
33689681 CGCACACTTAGTGC-TACATAGTCAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCAT-CATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
* **
33689735 CGCACACTTAGTGCATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCATCATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
33689789 CGCACACTTAGTGC
1 CGCACACTTAGTGC
33689803 TGTACAATTT
Statistics
Matches: 105, Mismatches: 14, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
53 1 0.01
54 60 0.57
55 44 0.42
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.27
Consensus pattern (54 bp):
CGCACACTTAGTGCATCATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
Found at i:33689792 original size:81 final size:82
Alignment explanation
Indices: 33689647--33689802 Score: 235
Period size: 81 Copynumber: 1.9 Consensus size: 82
33689637 TGCTATATAA
* *
33689647 TCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTAGTGCTACATAGTCAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTAGTGCAACATAGTCAAATCGCA
33689712 CACTTAGTGCCGCATGG
66 CACTTAGTGCCGCATGG
* * **
33689729 TCAATTCGCACACTTAGTGC-ATCATATTC-ATTTCGCACACTTAGTGCAACATAGTCAAATCGC
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAACTCGCACACTTAGTGCAACATAGTCAAATCGC
33689792 ACACTTAGTGC
65 ACACTTAGTGC
33689803 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 42 0.63
82 25 0.37
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (82 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTAGTGCAACATAGTCAAATCGCA
CACTTAGTGCCGCATGG
Found at i:33706210 original size:54 final size:54
Alignment explanation
Indices: 33706141--33706243 Score: 179
Period size: 54 Copynumber: 1.9 Consensus size: 54
33706131 TTCACTAGGC
33706141 CATGTGTCACACATGGTTGAGCCACACGTCAGTGTCTTAGGCCGTGTGGCTCAA
1 CATGTGTCACACATGGTTGAGCCACACGTCAGTGTCTTAGGCCGTGTGGCTCAA
* * *
33706195 CATGTGTCACGCATGGTTGAGTCACACGTCCGTGTCTTAGGCCGTGTGG
1 CATGTGTCACACATGGTTGAGCCACACGTCAGTGTCTTAGGCCGTGTGG
33706244 ACATGAAGTT
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
54 46 1.00
ACGTcount: A:0.17, C:0.25, G:0.30, T:0.27
Consensus pattern (54 bp):
CATGTGTCACACATGGTTGAGCCACACGTCAGTGTCTTAGGCCGTGTGGCTCAA
Found at i:33711360 original size:40 final size:40
Alignment explanation
Indices: 33711236--33711446 Score: 239
Period size: 40 Copynumber: 5.3 Consensus size: 40
33711226 CATTTGAATG
* * * *
33711236 ATATTCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
* * * *
33711276 TTATCCGGGCTAAG-TCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
*
33711315 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGATT
* *
33711355 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
* * * ** *
33711395 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
33711435 ATATCC-GGCTAA
1 ATATCCGGGCTAA
33711447 ATTCTGAAGA
Statistics
Matches: 150, Mismatches: 18, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
39 45 0.30
40 102 0.68
41 3 0.02
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
Found at i:33718652 original size:13 final size:13
Alignment explanation
Indices: 33718634--33718660 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
33718624 ATATATCATA
33718634 TGTATGAAAATTT
1 TGTATGAAAATTT
33718647 TGTATGAAAATTT
1 TGTATGAAAATTT
33718660 T
1 T
33718661 AACGTTTCTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.00, G:0.15, T:0.48
Consensus pattern (13 bp):
TGTATGAAAATTT
Found at i:33719202 original size:17 final size:17
Alignment explanation
Indices: 33719180--33719215 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
33719170 TAATATGTTT
33719180 TGTATTTGAATTTTTGA
1 TGTATTTGAATTTTTGA
33719197 TGTATTTGAATTTTTGA
1 TGTATTTGAATTTTTGA
33719214 TG
1 TG
33719216 AAATTGAGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.22, C:0.00, G:0.19, T:0.58
Consensus pattern (17 bp):
TGTATTTGAATTTTTGA
Found at i:33719222 original size:17 final size:17
Alignment explanation
Indices: 33719185--33719222 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
33719175 TGTTTTGTAT
* *
33719185 TTGAATTTTTGATGTAT
1 TTGAATTTTTGATGAAA
33719202 TTGAATTTTTGATGAAA
1 TTGAATTTTTGATGAAA
33719219 TTGA
1 TTGA
33719223 GTATTTTGGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.29, C:0.00, G:0.18, T:0.53
Consensus pattern (17 bp):
TTGAATTTTTGATGAAA
Found at i:33719931 original size:43 final size:43
Alignment explanation
Indices: 33719762--33719932 Score: 161
Period size: 43 Copynumber: 4.0 Consensus size: 43
33719752 ATAGGATTTT
* *
33719762 GATATTTGATTTCGTGTAAGACCACGTCTGGGACGTTGGCATC
1 GATATTTGATTACATGTAAGACCACGTCTGGGACGTTGGCATC
* * * * * *
33719805 GAT-TTGAGATTTACATGTAAGATCATGTTTGGGACATTGACATC
1 GATATT-TGA-TTACATGTAAGACCACGTCTGGGACGTTGGCATC
* * * *
33719849 -TTATTTGATTTCGTGTAAAACC-CTGTCTGGGACAG-TGGCATC
1 GATATTTGATTACATGTAAGACCAC-GTCTGGGAC-GTTGGCATC
*
33719891 GATATTTGATTACATGTAAGACCACGTCTGGGATGTTGGCAT
1 GATATTTGATTACATGTAAGACCACGTCTGGGACGTTGGCAT
33719933 TGTATGAGCT
Statistics
Matches: 97, Mismatches: 23, Indels: 16
0.71 0.17 0.12
Matches are distributed among these distances:
42 27 0.28
43 40 0.41
44 30 0.31
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.35
Consensus pattern (43 bp):
GATATTTGATTACATGTAAGACCACGTCTGGGACGTTGGCATC
Found at i:33730804 original size:48 final size:47
Alignment explanation
Indices: 33730681--33730809 Score: 131
Period size: 45 Copynumber: 2.8 Consensus size: 47
33730671 TTCATCTCTG
* * *
33730681 TGCCGATCCCATGTCCTAGACATGGTCTTACACTGGCTCTCATAATA
1 TGCCGATGCCATGTCCTAGACATGGTCTTACACTAGCCCTCATAATA
* * * * *
33730728 TGGCTGATG-CATG-CCCAGACAT-TTCTTACACTAGCCCTCGT-CTGGA
1 T-GCCGATGCCATGTCCTAGACATGGTCTTACACTAGCCCTCATAAT--A
33730774 TGCCGATGCCATGTCCTAGACATGGTCTTACACTAG
1 TGCCGATGCCATGTCCTAGACATGGTCTTACACTAG
33730810 TGCACAAATC
Statistics
Matches: 65, Mismatches: 11, Indels: 11
0.75 0.13 0.13
Matches are distributed among these distances:
44 1 0.02
45 21 0.32
46 14 0.22
47 13 0.20
48 16 0.25
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29
Consensus pattern (47 bp):
TGCCGATGCCATGTCCTAGACATGGTCTTACACTAGCCCTCATAATA
Found at i:33741833 original size:56 final size:56
Alignment explanation
Indices: 33741769--33741882 Score: 219
Period size: 56 Copynumber: 2.0 Consensus size: 56
33741759 TATGATGAAT
33741769 ATTGAGATAGTAGAACTCCCTTTCGAACCTTAGGAAATGAATCGGATATACATGCC
1 ATTGAGATAGTAGAACTCCCTTTCGAACCTTAGGAAATGAATCGGATATACATGCC
*
33741825 ATTGAGATAGTAGAACTCCTTTTCGAACCTTAGGAAATGAATCGGATATACATGCC
1 ATTGAGATAGTAGAACTCCCTTTCGAACCTTAGGAAATGAATCGGATATACATGCC
33741881 AT
1 AT
33741883 GACATTTGGG
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 57 1.00
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.28
Consensus pattern (56 bp):
ATTGAGATAGTAGAACTCCCTTTCGAACCTTAGGAAATGAATCGGATATACATGCC
Found at i:33742038 original size:46 final size:47
Alignment explanation
Indices: 33741909--33742039 Score: 169
Period size: 47 Copynumber: 2.8 Consensus size: 47
33741899 GGGTGCTAGT
* ** *
33741909 GTAAGACATGTCTGGGACATGCATCGGCCACATTATG-AGAGCCAAT
1 GTAAGACATGTCTGGGACATGCATCGGCTACAAGATGTAGAGCCAAG
* *
33741955 GTAAGACCATTTCTGGGACATGCATCGGCCT-CGAGATGTA-AGCCAAG
1 GTAAGA-CATGTCTGGGACATGCATCGG-CTACAAGATGTAGAGCCAAG
33742002 GTAAGACATGTCTGGGACATGCATCGGCTACAAGATGT
1 GTAAGACATGTCTGGGACATGCATCGGCTACAAGATGT
33742040 GTTAGTGTAA
Statistics
Matches: 73, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
45 2 0.03
46 33 0.45
47 36 0.49
48 2 0.03
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.22
Consensus pattern (47 bp):
GTAAGACATGTCTGGGACATGCATCGGCTACAAGATGTAGAGCCAAG
Found at i:33742094 original size:48 final size:47
Alignment explanation
Indices: 33742002--33742217 Score: 178
Period size: 48 Copynumber: 4.6 Consensus size: 47
33741992 GTAAGCCAAG
* *
33742002 GTAAGA-CATGTCTGGGACAT-GCATCGGCTAC--A-AGATGTGTTAGT
1 GTAAGACCATGTTTGGGACATGGCATC-GC-ACGTATAGAGGTGTTAGT
*
33742046 GTAAGACCATCTTTGGGACATGGCATCTGCACGTATAGAGGTGTTAGT
1 GTAAGACCATGTTTGGGACATGGCATC-GCACGTATAGAGGTGTTAGT
* ** * * * * *
33742094 GTAAGACCATGTCTAAGAGATGGCATCGTCATGTATAGTGGTGTCATT
1 GTAAGACCATGTTTGGGACATGGCATCG-CACGTATAGAGGTGTTAGT
* * *
33742142 GTAAGACCATGTCTT-GGACATGGCATCGGCACGGATATGAGAGAGCTAGT
1 GTAAGACCATGT-TTGGGACATGGCATC-GCACGTATA-GAG-GTGTTAGT
33742192 GTAAGACCATGTTTGGG--ATGGCATCG
1 GTAAGACCATGTTTGGGACATGGCATCG
33742218 ACTTGATGGA
Statistics
Matches: 138, Mismatches: 23, Indels: 19
0.77 0.13 0.11
Matches are distributed among these distances:
44 6 0.04
45 14 0.10
46 7 0.05
47 3 0.02
48 84 0.61
49 6 0.04
50 18 0.13
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.27
Consensus pattern (47 bp):
GTAAGACCATGTTTGGGACATGGCATCGCACGTATAGAGGTGTTAGT
Done.