Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 106 of 362
Found at i:34581747 original size:3 final size:3
Alignment explanation
Indices: 34581739--34581768 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
34581729 TATGTTTTAT
34581739 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
34581769 TATTATATTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:34581798 original size:27 final size:27
Alignment explanation
Indices: 34581751--34581816 Score: 66
Period size: 27 Copynumber: 2.4 Consensus size: 27
34581741 AATAATAATA
*
34581751 ATAATAATAATAATAATATATTATA-TT
1 ATAATATTAATAATAATATATTA-AGTT
*
34581778 ATAATATTAATACTTAA-ATATTAAGTT
1 ATAATATTAATA-ATAATATATTAAGTT
34581805 A-ATATATTAATA
1 ATA-ATATTAATA
34581817 TATATTTTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
26 2 0.06
27 29 0.85
28 3 0.09
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.44
Consensus pattern (27 bp):
ATAATATTAATAATAATATATTAAGTT
Found at i:34602027 original size:12 final size:12
Alignment explanation
Indices: 34602010--34602034 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
34602000 ATCTTACTTG
34602010 TTTTTGTTTTCT
1 TTTTTGTTTTCT
34602022 TTTTTGTTTTCT
1 TTTTTGTTTTCT
34602034 T
1 T
34602035 GAAAACAAGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.08, G:0.08, T:0.84
Consensus pattern (12 bp):
TTTTTGTTTTCT
Found at i:34603139 original size:18 final size:18
Alignment explanation
Indices: 34603108--34603150 Score: 68
Period size: 18 Copynumber: 2.3 Consensus size: 18
34603098 TTCCTTTAGG
*
34603108 TTAACTTAGGTTAAGTAAT
1 TTAA-TTAGATTAAGTAAT
34603127 TTAATTAGATTAAGTAAT
1 TTAATTAGATTAAGTAAT
34603145 TTAATT
1 TTAATT
34603151 TAATTCGTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 19 0.83
19 4 0.17
ACGTcount: A:0.40, C:0.02, G:0.12, T:0.47
Consensus pattern (18 bp):
TTAATTAGATTAAGTAAT
Found at i:34605290 original size:33 final size:32
Alignment explanation
Indices: 34605217--34605294 Score: 84
Period size: 33 Copynumber: 2.4 Consensus size: 32
34605207 CAGTGTTTAT
* * * *
34605217 ATGTAAGACCATAGCTGGGCTATGGTATTCTA
1 ATGTAAGACCATAACTGGGCTATGGCATACGA
* *
34605249 ATGATAAGACCATAACTGGGTTATGGCACTACGG
1 ATG-TAAGACCATAACTGGGCTATGGCA-TACGA
34605283 ATGTAAGACCAT
1 ATGTAAGACCAT
34605295 GGCAGGGCCA
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
32 3 0.08
33 30 0.79
34 5 0.13
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.27
Consensus pattern (32 bp):
ATGTAAGACCATAACTGGGCTATGGCATACGA
Found at i:34607799 original size:27 final size:27
Alignment explanation
Indices: 34607769--34607946 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
34607759 ATATTAAGTC
* * *
34607769 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
* *
34607796 CGCACACTTAGTGCCACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
34607824 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
** * *
34607851 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
* **
34607878 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAACT
* *
34607905 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAACT
34607932 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
34607947 GTACAATTTA
Statistics
Matches: 131, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
27 105 0.80
28 26 0.20
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:34607853 original size:55 final size:54
Alignment explanation
Indices: 34607769--34607946 Score: 232
Period size: 54 Copynumber: 3.3 Consensus size: 54
34607759 ATATTAAGTC
* * *
34607769 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCCACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACATAGTCAAA-T
* * * *
34607824 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACATAGTCAAAT
* ** *
34607878 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTA-CATAATCAACTCGCACACTTAGTGCCACATAGTCAAAT
34607932 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
34607947 GTACAATTTA
Statistics
Matches: 107, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
53 1 0.01
54 60 0.56
55 46 0.43
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:34607935 original size:81 final size:82
Alignment explanation
Indices: 34607790--34607945 Score: 235
Period size: 81 Copynumber: 1.9 Consensus size: 82
34607780 TGCTATATAA
* *
34607790 TCAACTCGCACACTTAGTGCCACATAATCAAACTCGCACACTTAGTGCTACATAGTCAACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAACTCGCACACTTAGTGCAACATAGTCAAATCGCA
34607855 CACTTAGTGCCGCATGG
66 CACTTAGTGCCGCATGG
* * **
34607872 TCAATTCGCACACTTAGTG-CATCATATTC-ATTTCGCACACTTAGTGCAACATAGTCAAATCGC
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAACTCGCACACTTAGTGCAACATAGTCAAATCGC
34607935 ACACTTAGTGC
65 ACACTTAGTGC
34607946 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 43 0.64
82 24 0.36
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.26
Consensus pattern (82 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAACTCGCACACTTAGTGCAACATAGTCAAATCGCA
CACTTAGTGCCGCATGG
Found at i:34616053 original size:27 final size:27
Alignment explanation
Indices: 34616036--34616213 Score: 124
Period size: 27 Copynumber: 6.6 Consensus size: 27
34616026 ATATTAAGTC
34616036 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
* **
34616063 CGCACACTTAGTGCTACGTAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
* * *
34616091 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTCAGTGCTATATAATCAACT
* *** ** *
34616118 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTCAGTGCTATATAATCAACT
* * **
34616145 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTCAGTGCTAT-ATAATCAACT
* * * * *
34616172 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTCAGTGCTATATAATCAACT
*
34616199 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
34616214 GTACAATTTA
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 103 0.80
28 26 0.20
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:34616175 original size:54 final size:54
Alignment explanation
Indices: 34616036--34616213 Score: 214
Period size: 54 Copynumber: 3.3 Consensus size: 54
34616026 ATATTAAGTC
* * * * * *
34616036 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACGTAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCAACATAGTCAAA-T
** * *
34616091 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCAACATAGTCAAAT
* **
34616145 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTA-CATAGTCAACTCGCACACTTAGTGCAACATAGTCAAAT
34616199 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
34616214 GTACAATTTA
Statistics
Matches: 105, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
53 1 0.01
54 60 0.57
55 44 0.42
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCAACATAGTCAAAT
Found at i:34622227 original size:38 final size:38
Alignment explanation
Indices: 34622184--34622381 Score: 231
Period size: 38 Copynumber: 5.2 Consensus size: 38
34622174 ATGATATTTG
* **
34622184 TATCCGGCTTAAAGACCGCAGGCTAT-ATGCTGG-AATTA
1 TATCCGGGTTAAATCCCGCAGGCT-TCATGCTGGTAA-TA
*
34622222 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
1 TATCCGGGTTAAATCCCGCAGGCTTCATGCTGGTAATA
*
34622260 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
1 TATCCGGGTTAAATCCCGCAGGCTTCATGCTGGTAATA
* * * * *
34622298 TATTCGGGTTAATTCCCGCAGGCTTCGTGCTAGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCATGCTGGTAATA
* *
34622336 TATCCGGGTTAAATCCCGCAGGCCT-AGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCA-TGCTGGTAATA
*
34622374 TATTCGGG
1 TATCCGGG
34622382 CCTTTGAGCC
Statistics
Matches: 143, Mismatches: 14, Indels: 6
0.88 0.09 0.04
Matches are distributed among these distances:
37 1 0.01
38 140 0.98
39 2 0.01
ACGTcount: A:0.22, C:0.22, G:0.26, T:0.30
Consensus pattern (38 bp):
TATCCGGGTTAAATCCCGCAGGCTTCATGCTGGTAATA
Found at i:34622315 original size:76 final size:75
Alignment explanation
Indices: 34622184--34622381 Score: 263
Period size: 76 Copynumber: 2.6 Consensus size: 75
34622174 ATGATATTTG
* ** * *
34622184 TATCCGGCTTAAAGACCGCAGGCTATATGCTGG-AATTATATCCGGGTTAAATCCCGCAGGCTTC
1 TATCCGGGTTAAATCCCGCAGGCT-TGTGCTGGTAA-TATATTCGGGTTAAATCCCGCAGGCTTC
*
34622248 GTGCTGGTAATA
64 GTGCTAGTAATA
*
34622260 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATATATTCGGGTTAATTCCCGCAGGCTTCG
1 TATCCGGGTTAAATCCCGCAGGCTT-GTGCTGGTAATATATTCGGGTTAAATCCCGCAGGCTTCG
*
34622325 TGCTAGTATTA
65 TGCTAGTAATA
* *
34622336 TATCCGGGTTAAATCCCGCAGGCCTAGTGCTGGTATTATATTCGGG
1 TATCCGGGTTAAATCCCGCAGG-CTTGTGCTGGTAATATATTCGGG
34622382 CCTTTGAGCC
Statistics
Matches: 109, Mismatches: 10, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
75 1 0.01
76 104 0.95
77 4 0.04
ACGTcount: A:0.22, C:0.22, G:0.26, T:0.30
Consensus pattern (75 bp):
TATCCGGGTTAAATCCCGCAGGCTTGTGCTGGTAATATATTCGGGTTAAATCCCGCAGGCTTCGT
GCTAGTAATA
Found at i:34622429 original size:45 final size:45
Alignment explanation
Indices: 34622374--34622546 Score: 158
Period size: 45 Copynumber: 3.9 Consensus size: 45
34622364 GCTGGTATTA
* * *
34622374 TATTCGGGCCTTTGAGCCTAGCAGGCTATTATGCTGGTGAGACAC
1 TATTCAGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGACAC
*
34622419 TATTCAGGCCTTT-AGGCCTAGCAGGCTATAATGCCGGTGAGATAC
1 TATTCAGGCCTTTGA-GCCTAGCAGGCTATAATGCCGGTGAGACAC
* * * * * *
34622464 TATT-TGGGCTTTCGAGCCTAGCAGGTTATAATGCCGATGAAATGA-
1 TATTCAGGCCTTT-GAGCCTAGCAGGCTATAATGCCGGTGAGA-CAC
* * * *
34622509 TAATCAGGCC-TCGATCCTAGCAGGCGA-AATGCCGGTGA
1 TATTCAGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
34622547 TTTGAGAAAA
Statistics
Matches: 105, Mismatches: 18, Indels: 12
0.78 0.13 0.09
Matches are distributed among these distances:
43 10 0.10
44 19 0.18
45 71 0.68
46 5 0.05
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (45 bp):
TATTCAGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGACAC
Found at i:34628994 original size:40 final size:40
Alignment explanation
Indices: 34628916--34629093 Score: 252
Period size: 40 Copynumber: 4.5 Consensus size: 40
34628906 AAACCAAGTA
* **
34628916 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTGAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
34628955 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
34628995 CCTTCGGGACTTAGCCCGGATATAGTAACTCGTACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
34629035 CCTTCGCGACTTAGCCCAGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
34629075 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
34629094 TTATCATCCG
Statistics
Matches: 124, Mismatches: 13, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
39 14 0.11
40 110 0.89
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:34636961 original size:40 final size:40
Alignment explanation
Indices: 34636898--34637060 Score: 247
Period size: 40 Copynumber: 4.1 Consensus size: 40
34636888 GGAATTTAGT
**
34636898 CGGATATAGCT-ACTCGCTGAAATGCCTTCGGGACTTAGCC
1 CGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCC
* * *
34636938 CGGTTCTAGTAACTCGCGCAAATGCCTTCGGGACTTAGCC
1 CGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
*
34636978 CGGATATAGTAACTCGTACAAATGCCTTCGGGACTTAGCC
1 CGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
*
34637018 CGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCC
1 CGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
34637058 CGG
1 CGG
34637061 TTATCATCCG
Statistics
Matches: 112, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
39 1 0.01
40 111 0.99
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
Found at i:34642068 original size:43 final size:43
Alignment explanation
Indices: 34642018--34642156 Score: 151
Period size: 43 Copynumber: 3.3 Consensus size: 43
34642008 TCCCGGACGT
* * *
34642018 GGTCTTACATGTAATTCAATATCGATGCCTCTGTCCCAGACAG
1 GGTCTTACACGTAATTCAATATCGATGCCTATGTCCCAGACAC
* *
34642061 GGTCTTACACG-AAATCAAATAT-GATG-CTGATGTCCCAGACAT
1 GGTCTTACACGTAATTC-AATATCGATGCCT-ATGTCCCAGACAC
* * *
34642103 GGTCTTATACGTAATTC-TTAATCGAGGCCTATGTCCCAGACAC
1 GGTCTTACACGTAATTCAAT-ATCGATGCCTATGTCCCAGACAC
34642146 GGTCTTACACG
1 GGTCTTACACG
34642157 ATGTCTCAGA
Statistics
Matches: 80, Mismatches: 10, Indels: 12
0.78 0.10 0.12
Matches are distributed among these distances:
41 3 0.04
42 31 0.39
43 44 0.55
44 2 0.03
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.29
Consensus pattern (43 bp):
GGTCTTACACGTAATTCAATATCGATGCCTATGTCCCAGACAC
Found at i:34644949 original size:21 final size:21
Alignment explanation
Indices: 34644925--34644967 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
34644915 TTTTATCAAG
34644925 TTAGGAACCATACCCCATAGT
1 TTAGGAACCATACCCCATAGT
34644946 TTAGGAACCATACCCCATAGT
1 TTAGGAACCATACCCCATAGT
34644967 T
1 T
34644968 ATCATGTAAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.33, C:0.28, G:0.14, T:0.26
Consensus pattern (21 bp):
TTAGGAACCATACCCCATAGT
Found at i:34646737 original size:52 final size:52
Alignment explanation
Indices: 34646655--34646761 Score: 196
Period size: 52 Copynumber: 2.1 Consensus size: 52
34646645 AATAATATAC
34646655 AATATTTAGAATTAGTTTAAAACCCCAAAAAAATATATTACATATTATTTAT
1 AATATTTAGAATTAGTTTAAAACCCCAAAAAAATATATTACATATTATTTAT
* *
34646707 AATATTTAGAATTAGTTTAAAACCCTAAAAAAATATCTTACATATTATTTAT
1 AATATTTAGAATTAGTTTAAAACCCCAAAAAAATATATTACATATTATTTAT
34646759 AAT
1 AAT
34646762 TTTTCTAGGG
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 53 1.00
ACGTcount: A:0.48, C:0.09, G:0.04, T:0.39
Consensus pattern (52 bp):
AATATTTAGAATTAGTTTAAAACCCCAAAAAAATATATTACATATTATTTAT
Found at i:34646840 original size:27 final size:27
Alignment explanation
Indices: 34646810--34646868 Score: 100
Period size: 27 Copynumber: 2.2 Consensus size: 27
34646800 ACATAAATCC
* *
34646810 AAATGTAAAAATCTTATGGTTTTATTA
1 AAATGTAAAAAACTTATGGTTTCATTA
34646837 AAATGTAAAAAACTTATGGTTTCATTA
1 AAATGTAAAAAACTTATGGTTTCATTA
34646864 AAATG
1 AAATG
34646869 CAACACCTAC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.44, C:0.05, G:0.12, T:0.39
Consensus pattern (27 bp):
AAATGTAAAAAACTTATGGTTTCATTA
Found at i:34648116 original size:134 final size:127
Alignment explanation
Indices: 34647946--34648181 Score: 346
Period size: 134 Copynumber: 1.8 Consensus size: 127
34647936 CTCTTTTTTT
* * *
34647946 AAAAAAAACTATTTTTCTTAAAGATCAAAGCTTTTATTTTTAAATAATTGAAAAAAAAATCAAAA
1 AAAAAAAAATACTTTTCTTAAAGATCAAAGCTTTTATTTTGAAATAATTG----AAAAA--AAAA
34648011 TTTTATTTTAAAAATTTAAATTTTCCTTTAAAATAACTAAAAAACAGCTAAACTTTCTCTTTTTC
60 -TTTATTTTAAAAATTTAAATTTTCCTTTAAAATAACTAAAAAACAGCTAAACTTTCTCTTTTTC
34648076 CAAA
124 CAAA
* * *
34648080 AAAAAAAAATACTTTTCTTAAATATCAAAGCTTTTATTTTGAAATAGTTGAAAAAAAAATTTGTT
1 AAAAAAAAATACTTTTCTTAAAGATCAAAGCTTTTATTTTGAAATAATTGAAAAAAAAATTTATT
*
34648145 TTAAAAATTTAAATTTTCCTTTAAAATGACTAAAAAA
66 TTAAAAATTTAAATTTTCCTTTAAAATAACTAAAAAA
34648182 ATATATTTTT
Statistics
Matches: 95, Mismatches: 7, Indels: 7
0.87 0.06 0.06
Matches are distributed among these distances:
127 41 0.43
128 4 0.04
130 5 0.05
134 45 0.47
ACGTcount: A:0.48, C:0.09, G:0.04, T:0.39
Consensus pattern (127 bp):
AAAAAAAAATACTTTTCTTAAAGATCAAAGCTTTTATTTTGAAATAATTGAAAAAAAAATTTATT
TTAAAAATTTAAATTTTCCTTTAAAATAACTAAAAAACAGCTAAACTTTCTCTTTTTCCAAA
Found at i:34665812 original size:15 final size:15
Alignment explanation
Indices: 34665792--34665860 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
34665782 GTATCTTGGG
34665792 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
34665807 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
34665822 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
34665837 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
34665852 TTTCTTTAT
1 TTTCTTTAT
34665861 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:34665861 original size:30 final size:30
Alignment explanation
Indices: 34665783--34665870 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
34665773 CATAATACCG
* * * *
34665783 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
34665813 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
34665843 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
34665871 TAGTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:34665885 original size:45 final size:45
Alignment explanation
Indices: 34665782--34665885 Score: 113
Period size: 45 Copynumber: 2.3 Consensus size: 45
34665772 GCATAATACC
*
34665782 GTATCTTGGGTTTCTTTATCCTGGATCTCTTTATTCTGGATTTCTT
1 GTATCTT-GGTTTCTCTATCCTGGATCTCTTTATTCTGGATTTCTT
* * * *
34665828 -TATTCTGGGTTTCTCTATCTTGGATTTCTTTATTC-GGTTTTCTT
1 GTA-TCTTGGTTTCTCTATCCTGGATCTCTTTATTCTGGATTTCTT
*
34665872 AGTATCTTTGTTTC
1 -GTATCTTGGTTTC
34665886 ATAATTTGTC
Statistics
Matches: 48, Mismatches: 7, Indels: 7
0.77 0.11 0.11
Matches are distributed among these distances:
44 8 0.17
45 35 0.73
46 5 0.10
ACGTcount: A:0.11, C:0.16, G:0.16, T:0.57
Consensus pattern (45 bp):
GTATCTTGGTTTCTCTATCCTGGATCTCTTTATTCTGGATTTCTT
Found at i:34668302 original size:46 final size:46
Alignment explanation
Indices: 34668252--34668433 Score: 195
Period size: 46 Copynumber: 3.8 Consensus size: 46
34668242 TATTTGGGCA
34668252 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAATG
* * * *
34668298 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGTT-CGAGAGATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GATACG-AA-T--G
* * * *
34668349 CATCCGAGCTCTTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAATG
* *
34668397 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
34668434 GCGGGTTACA
Statistics
Matches: 113, Mismatches: 14, Indels: 18
0.78 0.10 0.12
Matches are distributed among these distances:
46 65 0.58
47 7 0.06
48 3 0.03
49 1 0.01
51 3 0.03
52 6 0.05
53 28 0.25
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAATG
Found at i:34670678 original size:31 final size:32
Alignment explanation
Indices: 34670634--34670702 Score: 113
Period size: 31 Copynumber: 2.2 Consensus size: 32
34670624 TTATTTAGAA
*
34670634 TTATTAAATCATTTATAAATATGAATTTCATT
1 TTATTTAATCATTTATAAATATGAATTTCATT
*
34670666 TTATTTAA-CATTTATATATATGAATTTCATT
1 TTATTTAATCATTTATAAATATGAATTTCATT
34670697 TTATTT
1 TTATTT
34670703 TCTATTAGTA
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
31 28 0.80
32 7 0.20
ACGTcount: A:0.36, C:0.06, G:0.03, T:0.55
Consensus pattern (32 bp):
TTATTTAATCATTTATAAATATGAATTTCATT
Found at i:34675039 original size:40 final size:40
Alignment explanation
Indices: 34674984--34675096 Score: 156
Period size: 40 Copynumber: 2.8 Consensus size: 40
34674974 TATTCGGATG
34674984 ATATCCGGACTAAGATCCGAAGGCATTTGTGCTAGTTACT
1 ATATCCGGACTAAGATCCGAAGGCATTTGTGCTAGTTACT
* *
34675024 ATATCCGGACTAAGATCCGAAGGCAATTGTGCTAGTTATT
1 ATATCCGGACTAAGATCCGAAGGCATTTGTGCTAGTTACT
* ** *
34675064 ATAACCGGGTTAAG-TCCCGAAGGCATTCGTGCT
1 ATATCCGGACTAAGAT-CCGAAGGCATTTGTGCT
34675097 GGTTGTTACA
Statistics
Matches: 65, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
39 1 0.02
40 64 0.98
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.28
Consensus pattern (40 bp):
ATATCCGGACTAAGATCCGAAGGCATTTGTGCTAGTTACT
Found at i:34677804 original size:29 final size:28
Alignment explanation
Indices: 34677751--34677809 Score: 68
Period size: 29 Copynumber: 2.1 Consensus size: 28
34677741 ACGTTAGAAT
*
34677751 AATAATAATAAAATTAGATGATAATGAC
1 AATAATAATAAAATTAGATGATAATAAC
34677779 AATAATATATAAATATTA-AT-ACTAATAAC
1 AATAATA-ATAAA-ATTAGATGA-TAATAAC
34677808 AA
1 AA
34677810 CACTAACTAT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
28 8 0.30
29 15 0.56
30 4 0.15
ACGTcount: A:0.59, C:0.05, G:0.05, T:0.31
Consensus pattern (28 bp):
AATAATAATAAAATTAGATGATAATAAC
Found at i:34680283 original size:45 final size:45
Alignment explanation
Indices: 34680217--34680305 Score: 117
Period size: 45 Copynumber: 2.0 Consensus size: 45
34680207 GACTGGTGGC
* *
34680217 TTCGATCTGCTCCAGTACAACTTC-AGGAATATAAGATTCGCCATT
1 TTCGATCTACTCCAGTACAACTTCAAGG-AGATAAGATTCGCCATT
* * *
34680262 TTCGATCTACTCCATTGCAACTTCAAGGCGATAAGATTCGCCAT
1 TTCGATCTACTCCAGTACAACTTCAAGGAGATAAGATTCGCCAT
34680306 GAGTACTCAA
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
45 35 0.92
46 3 0.08
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.30
Consensus pattern (45 bp):
TTCGATCTACTCCAGTACAACTTCAAGGAGATAAGATTCGCCATT
Found at i:34681193 original size:53 final size:53
Alignment explanation
Indices: 34681113--34681213 Score: 148
Period size: 53 Copynumber: 1.9 Consensus size: 53
34681103 AAAACCCATT
* * * *
34681113 GGTCTCAAAACGCCCTTTAGGGGTTTTCTCCTTGGCCTCTCCATTTTTTAGAA
1 GGTCTCAAAACGCCCTTTACGAGTTTTCGCCTTGACCTCTCCATTTTTTAGAA
* *
34681166 GGTCTCAAAGCGCCCTTTACGAGTTTTCGCCTTGACCTCTCCCTTTTT
1 GGTCTCAAAACGCCCTTTACGAGTTTTCGCCTTGACCTCTCCATTTTT
34681214 AGGTGAAATA
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
53 42 1.00
ACGTcount: A:0.15, C:0.30, G:0.18, T:0.38
Consensus pattern (53 bp):
GGTCTCAAAACGCCCTTTACGAGTTTTCGCCTTGACCTCTCCATTTTTTAGAA
Found at i:34686919 original size:46 final size:46
Alignment explanation
Indices: 34686869--34687087 Score: 291
Period size: 46 Copynumber: 4.7 Consensus size: 46
34686859 TGGTTGAGCA
34686869 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
34686915 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * * * *
34686961 TCCGAACTCGTTGAGTTGAGTCTGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ATG
* * *
34687006 CATCCGAACTCGTTGAGTTGAGTCTGAGTTCATTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* *
34687054 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
34687088 GGGGCAGGTT
Statistics
Matches: 152, Mismatches: 14, Indels: 14
0.84 0.08 0.08
Matches are distributed among these distances:
43 6 0.04
45 4 0.03
46 104 0.68
47 29 0.19
48 4 0.03
50 5 0.03
ACGTcount: A:0.22, C:0.19, G:0.27, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
Found at i:34694962 original size:20 final size:20
Alignment explanation
Indices: 34694937--34694986 Score: 91
Period size: 20 Copynumber: 2.5 Consensus size: 20
34694927 ACGTACAATG
34694937 AATTATGATATGCGAAAGAA
1 AATTATGATATGCGAAAGAA
*
34694957 AATTATGATATGCGAAGGAA
1 AATTATGATATGCGAAAGAA
34694977 AATTATGATA
1 AATTATGATA
34694987 ATATGACATA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.48, C:0.04, G:0.20, T:0.28
Consensus pattern (20 bp):
AATTATGATATGCGAAAGAA
Found at i:34697580 original size:21 final size:21
Alignment explanation
Indices: 34697556--34697596 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
34697546 ATTATGATAA
34697556 AAAAACTATAATT-TTTTTATG
1 AAAAACTAT-ATTATTTTTATG
34697577 AAAAACTATATTATTTTTAT
1 AAAAACTATATTATTTTTAT
34697597 AATATATAGC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 3 0.16
21 16 0.84
ACGTcount: A:0.44, C:0.05, G:0.02, T:0.49
Consensus pattern (21 bp):
AAAAACTATATTATTTTTATG
Found at i:34698900 original size:20 final size:19
Alignment explanation
Indices: 34698843--34698900 Score: 55
Period size: 20 Copynumber: 2.9 Consensus size: 19
34698833 AAACAAAACA
34698843 TAAAG-TTATAAAATAAAAT
1 TAAAGATTATAAAAT-AAAT
* *
34698862 TAAAAGAATAAAAAAATAAAT
1 T-AAAG-ATTATAAAATAAAT
34698883 TAAAGATTATAAACATAA
1 TAAAGATTATAAA-ATAA
34698901 GTGGGAAGTA
Statistics
Matches: 31, Mismatches: 4, Indels: 7
0.74 0.10 0.17
Matches are distributed among these distances:
19 7 0.23
20 12 0.39
21 5 0.16
22 7 0.23
ACGTcount: A:0.67, C:0.02, G:0.05, T:0.26
Consensus pattern (19 bp):
TAAAGATTATAAAATAAAT
Found at i:34699305 original size:24 final size:26
Alignment explanation
Indices: 34699268--34699319 Score: 65
Period size: 24 Copynumber: 2.1 Consensus size: 26
34699258 AGAATTAGGG
*
34699268 AAATTTAGAGTT-AAT-TTGATATTA
1 AAATTTAGAGTTAAATGTGGATATTA
34699292 AAATTTAG-GATTAAATGTGGATATTA
1 AAATTTAGAG-TTAAATGTGGATATTA
34699318 AA
1 AA
34699320 TTAGTCCCGA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
23 1 0.04
24 10 0.42
25 3 0.12
26 10 0.42
ACGTcount: A:0.44, C:0.00, G:0.15, T:0.40
Consensus pattern (26 bp):
AAATTTAGAGTTAAATGTGGATATTA
Found at i:34704385 original size:47 final size:47
Alignment explanation
Indices: 34704267--34704443 Score: 188
Period size: 46 Copynumber: 3.8 Consensus size: 47
34704257 TGTAACCCGC
* * *
34704267 CCATAAGCGAACTCGGACTCAACTCAATGAGCTCAGG---AGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GGATCAGTT-ACAT
*
34704313 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGAT--C-AGTTACAT
* * *
34704363 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA-CATTTGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATCAGTTACAT
*
34704406 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGAT
34704444 ACTCAACCAT
Statistics
Matches: 111, Mismatches: 10, Indels: 19
0.79 0.07 0.14
Matches are distributed among these distances:
43 6 0.05
44 2 0.02
45 4 0.04
46 60 0.54
47 29 0.26
48 2 0.02
49 1 0.01
50 3 0.03
51 4 0.04
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (47 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATCAGTTACAT
Found at i:34704406 original size:93 final size:93
Alignment explanation
Indices: 34704274--34704443 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
34704264 CGCCCATAAG
* *
34704274 CGAACTCGGACTCAACTCAATGAGCTCAGGAGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCAGGAATTCGCATCCATAAGTGAACTCGGACTCAACTCA
34704339 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* *
34704367 CGAACTCGGACTCAACTCAACGAGTTC-GGACATTTGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTCAGGA-ATTCGCATCCATAAGTGAACTCGGACTCAACTC
34704431 AACGAGTTCGGAT
65 AACGAGTTCGGAT
34704444 ACTCAACCAT
Statistics
Matches: 72, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
92 3 0.04
93 69 0.96
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCAGGAATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:34706397 original size:27 final size:27
Alignment explanation
Indices: 34706349--34706507 Score: 182
Period size: 27 Copynumber: 5.9 Consensus size: 27
34706339 GCGGGGCTGC
* * *
34706349 CAGATATTGTGACAAAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGATA
34706376 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
*
34706402 CATATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
34706429 CAGATAATCGTGGCATAGCCACCAGA-A
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
34706456 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
34706483 CAGGTAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
34706508 GACGCTTCCT
Statistics
Matches: 114, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
26 9 0.08
27 101 0.89
28 4 0.04
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:34706449 original size:54 final size:54
Alignment explanation
Indices: 34706349--34706507 Score: 232
Period size: 54 Copynumber: 3.0 Consensus size: 54
34706339 GCGGGGCTGC
* * * *
34706349 CAGATAT-TGTGACAAAGTCACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAA
1 CAGATATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCACCAGAA
* *
34706402 CATATATATGTGGCAGAGCCACCAGATCAGATAATCGTGGCATAGCCACCAGAA
1 CAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGAA
*
34706456 CAGATATATGTGGCAGAGCCACCAGATCAGGTAATTGTGGCATAGCCACCAG
1 CAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAG
34706508 GACGCTTCCT
Statistics
Matches: 95, Mismatches: 9, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
53 11 0.12
54 84 0.88
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.19
Consensus pattern (54 bp):
CAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGAA
Found at i:34706911 original size:27 final size:26
Alignment explanation
Indices: 34706873--34706950 Score: 111
Period size: 27 Copynumber: 2.9 Consensus size: 26
34706863 AAATATTCAA
34706873 AGATAATCGTGGCATAGCCACCAGAAC
1 AGATAAT-GTGGCATAGCCACCAGAAC
* *
34706900 AGATATATGTGGCAGAGCCACCAGATC
1 AGATA-ATGTGGCATAGCCACCAGAAC
34706927 AGATAATTGTGGCATAGCCACCAG
1 AGATAA-TGTGGCATAGCCACCAG
34706951 GACGCTTCCT
Statistics
Matches: 46, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
26 1 0.02
27 43 0.93
28 2 0.04
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.18
Consensus pattern (26 bp):
AGATAATGTGGCATAGCCACCAGAAC
Found at i:34707031 original size:443 final size:443
Alignment explanation
Indices: 34706430--34707316 Score: 1729
Period size: 443 Copynumber: 2.0 Consensus size: 443
34706420 CCACCAGATC
*
34706430 AGATAATCGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGCCACCAGATCAGGTAATTGTG
1 AGATAATCGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTG
34706495 GCATAGCCACCAGGACGCTTCCTCCATAATATAACCCATGTCCCCATGCAACAGATATATAATCA
66 GCATAGCCACCAGGACGCTTCCTCCATAATATAACCCATGTCCCCATGCAACAGATATATAATCA
*
34706560 TGGCAAACATCATACAGAATCTGATCGTCATGCTTTTTAGTCAAAATTAACCCTAGGGGTATAAC
131 TGGCAAACATCATACAGAATCAGATCGTCATGCTTTTTAGTCAAAATTAACCCTAGGGGTATAAC
34706625 GATAATTTTGCACCTAGGGGTATAACAGTAATTTTCCATACATAGGGGTATTATAGTAATTTAGC
196 GATAATTTTGCACCTAGGGGTATAACAGTAATTTTCCATACATAGGGGTATTATAGTAATTTAGC
34706690 TACTTTTAGGGTTTTCATGCATATCCTAACTATTTACATACTATCAGAACACTTACCGCGCATAC
261 TACTTTTAGGGTTTTCATGCATATCCTAACTATTTACATACTATCAGAACACTTACCGCGCATAC
*
34706755 TTACCGAATTGGGCCCGTTGGCCCATGAACTCGATCTTTGGCCCATTAAGCCCAAATTATCAAAA
326 TTACCGAATTGGGCCCGTTGGCCCATGAACCCGATCTTTGGCCCATTAAGCCCAAATTATCAAAA
34706820 TATACGAAATCGCGTGTACTGCAGTTTATTACTTTAGATTACCAAATATTCAA
391 TATACGAAATCGCGTGTACTGCAGTTTATTACTTTAGATTACCAAATATTCAA
34706873 AGATAATCGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTG
1 AGATAATCGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTG
34706938 GCATAGCCACCAGGACGCTTCCTCCATAATATAACCCATGTCCCCATGCAACAGATATATAATCA
66 GCATAGCCACCAGGACGCTTCCTCCATAATATAACCCATGTCCCCATGCAACAGATATATAATCA
*
34707003 TGGCATACATCATACAGAATCAGATCGTCATGCTTTTTAGTCAAAATTAACCCTAGGGGTATAAC
131 TGGCAAACATCATACAGAATCAGATCGTCATGCTTTTTAGTCAAAATTAACCCTAGGGGTATAAC
34707068 GATAATTTTGCACCTAGGGGTATAACAGTAATTTTCCATACATAGGGGTATTATAGTAATTTAGC
196 GATAATTTTGCACCTAGGGGTATAACAGTAATTTTCCATACATAGGGGTATTATAGTAATTTAGC
34707133 TACTTTTAGGGTTTTCATGCATATCCTAACTATTTACATACTATCAGAACACTTACCGCGCATAC
261 TACTTTTAGGGTTTTCATGCATATCCTAACTATTTACATACTATCAGAACACTTACCGCGCATAC
34707198 TTACCGAATTGGGCCCGTTGGCCCATGAACCCGATCTTTGGCCCATTAAGCCCAAATTATCAAAA
326 TTACCGAATTGGGCCCGTTGGCCCATGAACCCGATCTTTGGCCCATTAAGCCCAAATTATCAAAA
*
34707263 TGTACGAAATCGCGTGTACTGCAGTTTATTACTTTAGATTACCAAATATTCAA
391 TATACGAAATCGCGTGTACTGCAGTTTATTACTTTAGATTACCAAATATTCAA
34707316 A
1 A
34707317 CCCAACTATC
Statistics
Matches: 439, Mismatches: 5, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
443 439 1.00
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.29
Consensus pattern (443 bp):
AGATAATCGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTG
GCATAGCCACCAGGACGCTTCCTCCATAATATAACCCATGTCCCCATGCAACAGATATATAATCA
TGGCAAACATCATACAGAATCAGATCGTCATGCTTTTTAGTCAAAATTAACCCTAGGGGTATAAC
GATAATTTTGCACCTAGGGGTATAACAGTAATTTTCCATACATAGGGGTATTATAGTAATTTAGC
TACTTTTAGGGTTTTCATGCATATCCTAACTATTTACATACTATCAGAACACTTACCGCGCATAC
TTACCGAATTGGGCCCGTTGGCCCATGAACCCGATCTTTGGCCCATTAAGCCCAAATTATCAAAA
TATACGAAATCGCGTGTACTGCAGTTTATTACTTTAGATTACCAAATATTCAA
Found at i:34708603 original size:26 final size:26
Alignment explanation
Indices: 34708572--34708679 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
34708562 TGAAATTCCC
*
34708572 ATCATGGAACATTTACCTAAGCCATT
1 ATCATGGAACATTTACCTAACCCATT
34708598 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
34708624 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
34708650 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
34708676 ATCA
1 ATCA
34708680 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.35, C:0.24, G:0.08, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:34713342 original size:28 final size:28
Alignment explanation
Indices: 34713305--34713411 Score: 142
Period size: 28 Copynumber: 3.8 Consensus size: 28
34713295 GCAAACAAAT
*
34713305 ATGGTACTTAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
*
34713333 ATGGCACTTAGTGTATGAAATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
* **
34713361 ATGGCACTTAGTGTGCGAGTTATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
* * *
34713389 ATGACACTTAGTGTGCAAAATAT
1 ATGGCACTTAGTGTACGAAATAT
34713412 CGAATGATTC
Statistics
Matches: 69, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 69 1.00
ACGTcount: A:0.34, C:0.09, G:0.25, T:0.32
Consensus pattern (28 bp):
ATGGCACTTAGTGTACGAAATATTGAGA
Found at i:34721435 original size:27 final size:26
Alignment explanation
Indices: 34721391--34721496 Score: 131
Period size: 27 Copynumber: 4.0 Consensus size: 26
34721381 GTCACTAGAT
* *
34721391 ACAGATATTGTGGTAGAGCCACCAGA
1 ACAGATAATGTGGCAGAGCCACCAGA
34721417 ACAGATATATGTGGCAGAGCCACCAGA
1 ACAGATA-ATGTGGCAGAGCCACCAGA
* *
34721444 TCAGATAATCGTGGCATAGCCACCAGA
1 ACAGATAAT-GTGGCAGAGCCACCAGA
* *
34721471 TCAGATAATTGTGGCATAGCCACCAG
1 ACAGATAA-TGTGGCAGAGCCACCAG
34721497 GACGCTTCCT
Statistics
Matches: 73, Mismatches: 4, Indels: 5
0.89 0.05 0.06
Matches are distributed among these distances:
26 9 0.12
27 63 0.86
28 1 0.01
ACGTcount: A:0.34, C:0.23, G:0.25, T:0.19
Consensus pattern (26 bp):
ACAGATAATGTGGCAGAGCCACCAGA
Found at i:34723147 original size:26 final size:26
Alignment explanation
Indices: 34723116--34723222 Score: 162
Period size: 26 Copynumber: 4.2 Consensus size: 26
34723106 TGAAATTCCC
*
34723116 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
34723142 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
34723168 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
34723194 ATCATCGAATA-TTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
34723219 ATCA
1 ATCA
34723223 ATTTGTACTA
Statistics
Matches: 76, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
25 17 0.22
26 59 0.78
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:34729784 original size:25 final size:25
Alignment explanation
Indices: 34729736--34729784 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
34729726 CTAGGTTAGT
*
34729736 TAGAGTTTAAGTGGAAAAATAAAAA
1 TAGAGTTTAAGTGGAAAAAGAAAAA
* * *
34729761 TAGAGTTTAATTGGGAGAAGAAAA
1 TAGAGTTTAAGTGGAAAAAGAAAA
34729785 GCCAAAATAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.51, C:0.00, G:0.24, T:0.24
Consensus pattern (25 bp):
TAGAGTTTAAGTGGAAAAAGAAAAA
Found at i:34730216 original size:23 final size:23
Alignment explanation
Indices: 34730189--34730236 Score: 78
Period size: 23 Copynumber: 2.1 Consensus size: 23
34730179 ATTCAATTAA
34730189 AACTAAAAGCTTAGTCAAACATT
1 AACTAAAAGCTTAGTCAAACATT
* *
34730212 AACTAATAGCTTAGTCCAACATT
1 AACTAAAAGCTTAGTCAAACATT
34730235 AA
1 AA
34730237 TCCTAATGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.46, C:0.19, G:0.08, T:0.27
Consensus pattern (23 bp):
AACTAAAAGCTTAGTCAAACATT
Found at i:34741105 original size:40 final size:40
Alignment explanation
Indices: 34741050--34741215 Score: 228
Period size: 40 Copynumber: 4.2 Consensus size: 40
34741040 GGACTAAGAT
* *
34741050 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTC
*
34741090 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTC
* * **
34741130 CCGAAGGCATTTGTGCGAATTACTATATCTAGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTC
* *
34741170 CCGAAGGCATTTGTGCGAGTTG-TTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCGAG-TGACTATATCCGGGCTAAGTC
34741209 CCGAAGG
1 CCGAAGG
34741216 TACTTGGGTT
Statistics
Matches: 114, Mismatches: 11, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
39 15 0.13
40 98 0.86
41 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTC
Found at i:34744274 original size:24 final size:24
Alignment explanation
Indices: 34744247--34744300 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 24
34744237 AATGCACTGA
34744247 GTGTGCG-GTGTGCTAAG-GCACTAT
1 GTGTGCGAGTGTG--AAGAGCACTAT
*
34744271 GTGTGCGAGTGTGACGAGCACTAT
1 GTGTGCGAGTGTGAAGAGCACTAT
34744295 GTGTGC
1 GTGTGC
34744301 AAATTCGATT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
23 2 0.07
24 20 0.74
25 5 0.19
ACGTcount: A:0.17, C:0.17, G:0.39, T:0.28
Consensus pattern (24 bp):
GTGTGCGAGTGTGAAGAGCACTAT
Found at i:34756134 original size:13 final size:13
Alignment explanation
Indices: 34756116--34756140 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
34756106 TATTATAAAC
34756116 ATTTTGTGTTAAT
1 ATTTTGTGTTAAT
34756129 ATTTTGTGTTAA
1 ATTTTGTGTTAA
34756141 AAATAATAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.00, G:0.16, T:0.60
Consensus pattern (13 bp):
ATTTTGTGTTAAT
Found at i:34757532 original size:40 final size:40
Alignment explanation
Indices: 34757444--34757608 Score: 262
Period size: 40 Copynumber: 4.2 Consensus size: 40
34757434 CGACTAAGAT
* *
34757444 CCGAAGGCATTTGTGCTAGTGACTATATCCGGG-TAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
*
34757483 CCGAAGGCATTTGTGTGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
34757523 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
** *
34757563 CCGAAGGCATTTGTGCGAGTTGTTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
34757602 CCGAAGG
1 CCGAAGG
34757609 TACTTGGGTT
Statistics
Matches: 118, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
39 45 0.38
40 73 0.62
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
Found at i:34757597 original size:79 final size:79
Alignment explanation
Indices: 34757444--34757608 Score: 260
Period size: 79 Copynumber: 2.1 Consensus size: 79
34757434 CGACTAAGAT
* *
34757444 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGTAAGTCCCGAAGGCATTTGTGTGAGTTACTAT
1 CCGAAGGCATTTGTGCGAGTGACTATATCCGGGTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT
*
34757509 ATCCGGGCTAAGTC
66 ATCCGGGCTAAATC
* **
34757523 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGTTA
1 CCGAAGGCATTTGTGCGAGTGACTATATCCGGG-TAAGTCCCGAAGGCATTTGTGCGAGTTACTA
34757588 TATCC-GGCTAAATC
65 TATCCGGGCTAAATC
34757602 CCGAAGG
1 CCGAAGG
34757609 TACTTGGGTT
Statistics
Matches: 79, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
79 46 0.58
80 33 0.42
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTGACTATATCCGGGTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT
ATCCGGGCTAAATC
Found at i:34760765 original size:93 final size:93
Alignment explanation
Indices: 34760606--34760776 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
34760596 ACCCATAAGC
* *
34760606 GAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGCATCCATGAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
34760671 CGAGTTCGGATGCCTAGTTACATCTCAT
66 CGAGTTCGGATGCCTAGTTACATCTCAT
*
34760699 GAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTCAGG-CATTCGCATCCATAAGTGAACTCGGACTCAACTCA
34760763 ACGAGTTCGGATGC
65 ACGAGTTCGGATGC
34760777 TCAACCATCC
Statistics
Matches: 74, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 2 0.03
93 72 0.97
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCAGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAT
Found at i:34760771 original size:46 final size:46
Alignment explanation
Indices: 34760598--34760773 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
34760588 TGTAACCCAC
* * *
34760598 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
* *
34760644 CCATGAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
34760694 -C-TCA-TGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
34760737 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
34760774 TGCTCAACCA
Statistics
Matches: 112, Mismatches: 8, Indels: 20
0.80 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 61 0.54
47 30 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:34762367 original size:33 final size:33
Alignment explanation
Indices: 34762325--34762392 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
34762315 TCTCGATGGA
34762325 ATACCCATTATCCGTCAATTCTTACGAATGATC
1 ATACCCATTATCCGTCAATTCTTACGAATGATC
34762358 ATACCCATTATCCGTCAATTCTTACGAATGATC
1 ATACCCATTATCCGTCAATTCTTACGAATGATC
34762391 AT
1 AT
34762393 TTCACATATA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.31, C:0.26, G:0.09, T:0.34
Consensus pattern (33 bp):
ATACCCATTATCCGTCAATTCTTACGAATGATC
Found at i:34766906 original size:38 final size:38
Alignment explanation
Indices: 34766852--34766932 Score: 153
Period size: 38 Copynumber: 2.1 Consensus size: 38
34766842 CAGCTCTGTT
*
34766852 TCCTTAGTGTTTAGTACAAATGCAAGGTAGGCTTCATA
1 TCCTTAGTGTTCAGTACAAATGCAAGGTAGGCTTCATA
34766890 TCCTTAGTGTTCAGTACAAATGCAAGGTAGGCTTCATA
1 TCCTTAGTGTTCAGTACAAATGCAAGGTAGGCTTCATA
34766928 TCCTT
1 TCCTT
34766933 TCCTTATATA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 42 1.00
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.35
Consensus pattern (38 bp):
TCCTTAGTGTTCAGTACAAATGCAAGGTAGGCTTCATA
Found at i:34779185 original size:45 final size:45
Alignment explanation
Indices: 34779135--34779222 Score: 167
Period size: 45 Copynumber: 2.0 Consensus size: 45
34779125 AGACATGTGT
*
34779135 CACATATATCATGAACTCAGACCATAACTCAATGAGTTCAGATGC
1 CACATATATCATGAACTCAGACCACAACTCAATGAGTTCAGATGC
34779180 CACATATATCATGAACTCAGACCACAACTCAATGAGTTCAGAT
1 CACATATATCATGAACTCAGACCACAACTCAATGAGTTCAGAT
34779223 CACAATAATT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.39, C:0.25, G:0.12, T:0.24
Consensus pattern (45 bp):
CACATATATCATGAACTCAGACCACAACTCAATGAGTTCAGATGC
Found at i:34779199 original size:24 final size:21
Alignment explanation
Indices: 34779135--34779201 Score: 57
Period size: 21 Copynumber: 3.0 Consensus size: 21
34779125 AGACATGTGT
34779135 CACATATATCATGAACTCAGA
1 CACATATATCATGAACTCAGA
**
34779156 C-CATA-ACTCAATGAGTTCAGA
1 CACATATA-TC-ATGAACTCAGA
34779177 TGCCACATATATCATGAACTCAGA
1 ---CACATATATCATGAACTCAGA
34779201 C
1 C
34779202 CACAACTCAA
Statistics
Matches: 35, Mismatches: 4, Indels: 14
0.66 0.08 0.26
Matches are distributed among these distances:
19 1 0.03
20 6 0.17
21 11 0.31
24 10 0.29
25 6 0.17
26 1 0.03
ACGTcount: A:0.39, C:0.25, G:0.12, T:0.24
Consensus pattern (21 bp):
CACATATATCATGAACTCAGA
Found at i:34779220 original size:21 final size:21
Alignment explanation
Indices: 34779151--34779227 Score: 66
Period size: 21 Copynumber: 3.5 Consensus size: 21
34779141 TATCATGAAC
*
34779151 TCAGACCATAACTCAATGAGT
1 TCAGACCACAACTCAATGAGT
* **
34779172 TCAGATGCCACATATATC-ATGAAC
1 TCAGA--CCACA-A-CTCAATGAGT
34779196 TCAGACCACAACTCAATGAGT
1 TCAGACCACAACTCAATGAGT
*
34779217 TCAGATCACAA
1 TCAGACCACAA
34779228 TAATTCCTAA
Statistics
Matches: 43, Mismatches: 8, Indels: 10
0.70 0.13 0.16
Matches are distributed among these distances:
20 2 0.05
21 20 0.47
22 5 0.12
23 4 0.09
24 10 0.23
25 2 0.05
ACGTcount: A:0.39, C:0.26, G:0.13, T:0.22
Consensus pattern (21 bp):
TCAGACCACAACTCAATGAGT
Found at i:34804226 original size:46 final size:46
Alignment explanation
Indices: 34804176--34804351 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
34804166 TGGTTGAGCA
*
34804176 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
34804222 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
*
34804269 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
34804315 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
34804352 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 13, Indels: 14
0.80 0.09 0.10
Matches are distributed among these distances:
43 6 0.05
45 3 0.03
46 64 0.58
47 29 0.26
48 3 0.03
50 5 0.05
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:34804332 original size:93 final size:93
Alignment explanation
Indices: 34804173--34804344 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
34804163 GGATGGTTGA
* *
34804173 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
34804238 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
34804266 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
34804331 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
34804345 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:34807280 original size:15 final size:15
Alignment explanation
Indices: 34807260--34807328 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
34807250 GTATCTTGGG
34807260 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
34807275 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
34807290 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
34807305 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
34807320 TTTCTTTAT
1 TTTCTTTAT
34807329 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:34807329 original size:30 final size:30
Alignment explanation
Indices: 34807251--34807338 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
34807241 CATAGTATCG
* * * *
34807251 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
34807281 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
34807311 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
34807339 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:34809761 original size:46 final size:46
Alignment explanation
Indices: 34809711--34809886 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
34809701 ATGGTTGGCA
34809711 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
34809757 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
34809802 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
34809850 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
34809887 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.04
45 3 0.03
46 65 0.58
47 28 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:34809866 original size:93 final size:93
Alignment explanation
Indices: 34809707--34809878 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
34809697 TAGGATGGTT
* *
34809707 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
34809772 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* *
34809800 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
34809865 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
34809879 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:34812354 original size:21 final size:21
Alignment explanation
Indices: 34812308--34812357 Score: 91
Period size: 21 Copynumber: 2.4 Consensus size: 21
34812298 ATGCTGAGCA
*
34812308 TTTGAGAGTAGTGCTACAAAC
1 TTTGTGAGTAGTGCTACAAAC
34812329 TTTGTGAGTAGTGCTACAAAC
1 TTTGTGAGTAGTGCTACAAAC
34812350 TTTGTGAG
1 TTTGTGAG
34812358 ATAAGCAGTT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.28, C:0.12, G:0.26, T:0.34
Consensus pattern (21 bp):
TTTGTGAGTAGTGCTACAAAC
Found at i:34819955 original size:40 final size:40
Alignment explanation
Indices: 34819900--34820053 Score: 263
Period size: 40 Copynumber: 3.9 Consensus size: 40
34819890 CCACTGAAAT
*
34819900 TAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTCAC
1 TAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCAC
**
34819940 TAGCATGAATGCCTTCGGGACTTAGCCCGGATATAGTCAC
1 TAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCAC
*
34819980 TAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAAC
1 TAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCAC
*
34820020 TTGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 TAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
34820054 CATCCGAATA
Statistics
Matches: 107, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 107 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
TAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCAC
Found at i:34828084 original size:40 final size:40
Alignment explanation
Indices: 34828006--34828186 Score: 240
Period size: 40 Copynumber: 4.5 Consensus size: 40
34827996 ACCCAAGTAT
* *
34828006 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* **
34828045 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
34828085 CTTCGGGACATAGCACGAATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
34828125 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATCC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
34828165 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
34828187 CATCTGAATA
Statistics
Matches: 123, Mismatches: 17, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
39 11 0.09
40 111 0.90
41 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.24
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:34832111 original size:21 final size:21
Alignment explanation
Indices: 34832043--34832118 Score: 57
Period size: 21 Copynumber: 3.5 Consensus size: 21
34832033 CATCATGAAC
*
34832043 TCAGA-CATAACTCAATGAGT
1 TCAGACCACAACTCAATGAGT
* **
34832063 TCAGATGCCACATATATC-ATGAAC
1 TCAGA--CCACA-A-CTCAATGAGT
34832087 TCAGACCACAACTCAATGAGT
1 TCAGACCACAACTCAATGAGT
*
34832108 TCAGATCACAA
1 TCAGACCACAA
34832119 TAATTCCTAG
Statistics
Matches: 42, Mismatches: 8, Indels: 11
0.69 0.13 0.18
Matches are distributed among these distances:
20 7 0.17
21 15 0.36
22 5 0.12
23 3 0.07
24 10 0.24
25 2 0.05
ACGTcount: A:0.39, C:0.25, G:0.13, T:0.22
Consensus pattern (21 bp):
TCAGACCACAACTCAATGAGT
Found at i:34841144 original size:45 final size:45
Alignment explanation
Indices: 34841089--34841176 Score: 149
Period size: 45 Copynumber: 2.0 Consensus size: 45
34841079 GAACTATGTG
* *
34841089 ATCTGAACTCATTAAGTTGTGGTCTGAGTTCATGATATATGTGGC
1 ATCTGAACTCACTAAGTTATGGTCTGAGTTCATGATATATGTGGC
*
34841134 ATCTGAACTCACTGAGTTATGGTCTGAGTTCATGATATATGTG
1 ATCTGAACTCACTAAGTTATGGTCTGAGTTCATGATATATGTG
34841177 ACACATGTTT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.25, C:0.14, G:0.24, T:0.38
Consensus pattern (45 bp):
ATCTGAACTCACTAAGTTATGGTCTGAGTTCATGATATATGTGGC
Found at i:34842702 original size:93 final size:93
Alignment explanation
Indices: 34842593--34842763 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
34842583 GCCCATAAGT
*
34842593 GAACTCGAACTCAACTCAACGAGCTCAGG-CATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGAACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
34842657 ACGAGCTCGGATGCCTAGTTACATCTCAC
65 ACGAGCTCGGATGCCTAGTTACATCTCAC
* *
34842686 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
*
34842751 CGAGTTCGGATGC
66 CGAGCTCGGATGC
34842764 TCAACCATCC
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.20
Consensus pattern (93 bp):
GAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:34842760 original size:46 final size:46
Alignment explanation
Indices: 34842585--34842760 Score: 200
Period size: 46 Copynumber: 3.8 Consensus size: 46
34842575 TGTAATCCGC
*
34842585 CCATAAGTGAACTCGAACTCAACTCAACGAGCTCAGG-CATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCAT
*
34842631 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA---C-A-TTCGCAT
* * *
34842681 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
34842724 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
34842761 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 61 0.55
47 28 0.25
48 2 0.02
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.31, C:0.30, G:0.19, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:34845154 original size:30 final size:30
Alignment explanation
Indices: 34845118--34845185 Score: 118
Period size: 30 Copynumber: 2.3 Consensus size: 30
34845108 GGGCAGACCG
*
34845118 TACATGCCCGTGTGTCACACACGGCCTAGA
1 TACATGCCCGTGTGTCACACACAGCCTAGA
*
34845148 TACATGCCCGTGTGTCACACACAGTCTAGA
1 TACATGCCCGTGTGTCACACACAGCCTAGA
34845178 TACATGCC
1 TACATGCC
34845186 TTGTGTCTAC
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.25, C:0.32, G:0.21, T:0.22
Consensus pattern (30 bp):
TACATGCCCGTGTGTCACACACAGCCTAGA
Found at i:34847072 original size:48 final size:48
Alignment explanation
Indices: 34847001--34847378 Score: 614
Period size: 48 Copynumber: 7.8 Consensus size: 48
34846991 TTAATGAATC
34847001 ATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTAT
1 ATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTAT
34847049 ATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTAT
1 ATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTAT
34847097 ATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTAT
1 ATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTAT
*
34847145 ATGTGGTAAAGTCGAATGGCTAATGTGAAATATGTATGAGATATGTAT
1 ATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTAT
* * *
34847193 ATGTGGTAAAGCTGAATGGTTAATGTGAAATATATATATATGAGATATGTAT
1 ATGTGGTAAAGCCGAATGGCTAATGTG--A-A-ATATGTATGAGATATGTAT
*
34847245 ATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCAT
1 ATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTAT
*
34847293 ATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATGTAT
1 ATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATGTAT
* *
34847343 ATGTGGTAAAGCCGAATGACTAGTGTGAAATATGTA
1 ATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
34847379 GGCGATGTGT
Statistics
Matches: 308, Mismatches: 14, Indels: 16
0.91 0.04 0.05
Matches are distributed among these distances:
47 1 0.00
48 215 0.70
49 5 0.02
50 42 0.14
51 2 0.01
52 43 0.14
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.32
Consensus pattern (48 bp):
ATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTAT
Found at i:34847392 original size:148 final size:145
Alignment explanation
Indices: 34847001--34847394 Score: 587
Period size: 148 Copynumber: 2.7 Consensus size: 145
34846991 TTAATGAATC
34847001 ATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAAT
1 ATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAAT
34847066 GGCTAATGTGAAATATGTATGAGA--TATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATA
66 GGCTAATGTGAAATATGTA-GAGATGTATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATA
*
34847129 TGTATGAGATATGTAT
130 TGTATGAGATATGCAT
* *
34847145 ATGTGGTAAAGTCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCTGAAT
1 ATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAAT
* * * *
34847210 GGTTAATGTGAAATATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAA
66 GGCTAATGTGAAATATGTAGAGAT--G-TATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAA
34847275 TATGTATGAGATATGCAT
128 TATGTATGAGATATGCAT
*
34847293 ATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGCCG
1 ATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATGTATATGTGGTAAAGCCG
* * * *
34847357 AATGACTAGTGTGAAATATGTAGGCGATGTGTGTATAT
63 AATGGCTAATGTGAAATATGTA-GAGATGTATGTATAT
34847395 TGTGTCCGAA
Statistics
Matches: 223, Mismatches: 18, Indels: 14
0.87 0.07 0.05
Matches are distributed among these distances:
143 2 0.01
144 80 0.36
147 1 0.00
148 86 0.39
149 3 0.01
150 49 0.22
151 2 0.01
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.32
Consensus pattern (145 bp):
ATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAAT
GGCTAATGTGAAATATGTAGAGATGTATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
GTATGAGATATGCAT
Found at i:34847575 original size:37 final size:37
Alignment explanation
Indices: 34847525--34847596 Score: 108
Period size: 37 Copynumber: 1.9 Consensus size: 37
34847515 GGAAATATAT
* * *
34847525 TCCGGGTAAGACCCGTTGACTACGTGTGGAGATTTTA
1 TCCGGGTAAGACCCGATAACTACGTGAGGAGATTTTA
*
34847562 TCCGGGTAAGACCCGATAACTTCGTGAGGAGATTT
1 TCCGGGTAAGACCCGATAACTACGTGAGGAGATTT
34847597 CATCTGAGCT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 31 1.00
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATAACTACGTGAGGAGATTTTA
Found at i:34849249 original size:40 final size:40
Alignment explanation
Indices: 34848852--34849237 Score: 576
Period size: 40 Copynumber: 9.7 Consensus size: 40
34848842 GAGAGTTATA
*
34848852 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGA
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
*
34848892 TATATCCGGGCTAAGTCCCGGAGAGCATTCGTGCTAGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
34848932 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
34848972 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
*
34849012 TATATCAGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
* * * * *
34849052 TATATCTGGGCTAAGTCCCAAAGAGCATTCGTGTTGGTGA
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
* * *
34849092 TGTATCC-GGCTAAGTCCCGAAGAGCATTTGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
* * * *
34849131 TATATCCGGGCTAAGTCTCAAAGAGCATTTGTGCTAGAGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
* * * *
34849171 TATATCAGGGTTAAGTCCCGAAGAGCATTCGCGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
* *
34849211 TATAGCCGGGCTAGGTCCCGAAGAGCA
1 TATATCCGGGCTAAGTCCCGAAGAGCA
34849238 ATCATGCTGG
Statistics
Matches: 313, Mismatches: 32, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
39 34 0.11
40 279 0.89
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
Found at i:34849463 original size:25 final size:25
Alignment explanation
Indices: 34849413--34849463 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
34849403 TGTGTAACAA
* * *
34849413 CAAATGAATAGGGGCACTATGTGTG
1 CAAATGAATAGAGGCACTAAGAGTG
*
34849438 CAAATGATTAGAGGCACTAAGAGTG
1 CAAATGAATAGAGGCACTAAGAGTG
34849463 C
1 C
34849464 GAGTTATTCA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.35, C:0.14, G:0.29, T:0.22
Consensus pattern (25 bp):
CAAATGAATAGAGGCACTAAGAGTG
Found at i:34849532 original size:29 final size:28
Alignment explanation
Indices: 34849448--34849550 Score: 86
Period size: 28 Copynumber: 3.6 Consensus size: 28
34849438 CAAATGATTA
* * * *
34849448 GAGGCACTAAGAGTGCGAGTTATTCAACT
1 GAGGCACTATGTGTGCGAGTT-TTTAATT
**
34849477 GA-GCACTATGTGTGCGAGATTGGTAATT
1 GAGGCACTATGTGTGCGAG-TTTTTAATT
*
34849505 GAGGCACTATGTGTGCGAGTTCTTTAATC
1 GAGGCACTATGTGTGCGAGTT-TTTAATT
34849534 GAGTG--CTATGTGTGCGA
1 GAG-GCACTATGTGTGCGA
34849551 AATCAGTCAG
Statistics
Matches: 61, Mismatches: 9, Indels: 9
0.77 0.11 0.11
Matches are distributed among these distances:
28 33 0.54
29 27 0.44
30 1 0.02
ACGTcount: A:0.24, C:0.15, G:0.31, T:0.30
Consensus pattern (28 bp):
GAGGCACTATGTGTGCGAGTTTTTAATT
Found at i:34851913 original size:48 final size:48
Alignment explanation
Indices: 34851842--34852219 Score: 605
Period size: 48 Copynumber: 7.8 Consensus size: 48
34851832 TTAATGAATC
34851842 ATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTAT
1 ATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTAT
*
34851890 ATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAGATATGTAT
1 ATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTAT
34851938 ATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTAT
1 ATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTAT
*
34851986 ATGTGGTAAAGTCGAATGGCTAATGTGAAATATGTATGAGATATGTAT
1 ATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTAT
* * *
34852034 ATGTGGTAAAGCTGAATGGTTAATGTGAAATATATATATATGAGATATGTAT
1 ATGTGGTAAAGCCGAATGGCTAATGTG--A-A-ATATGTATGAGATATGTAT
*
34852086 ATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCAT
1 ATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTAT
*
34852134 ATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATGTAT
1 ATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATGTAT
* *
34852184 ATGTGGTAAAGCCGAATGACTAGTGTGAAATATGTA
1 ATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
34852220 GGCGATGTGT
Statistics
Matches: 306, Mismatches: 16, Indels: 16
0.91 0.05 0.05
Matches are distributed among these distances:
47 1 0.00
48 213 0.70
49 5 0.02
50 42 0.14
51 2 0.01
52 43 0.14
ACGTcount: A:0.37, C:0.06, G:0.26, T:0.32
Consensus pattern (48 bp):
ATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTAT
Found at i:34852140 original size:148 final size:148
Alignment explanation
Indices: 34851842--34852216 Score: 607
Period size: 148 Copynumber: 2.5 Consensus size: 148
34851832 TTAATGAATC
34851842 ATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAAT
1 ATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAAT
* *
34851907 GGCTAATATG--A-A-ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAA
66 GGCTAATGTGAAATATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAA
*
34851968 TATGTATGAGATATGTAT
131 TATGTATGAGATATGCAT
* *
34851986 ATGTGGTAAAGTCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCTGAAT
1 ATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAAT
*
34852051 GGTTAATGTGAAATATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAA
66 GGCTAATGTGAAATATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAA
34852116 TATGTATGAGATATGCAT
131 TATGTATGAGATATGCAT
*
34852134 ATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGCCG
1 ATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATGTATATGTGGTAAAGCCG
* *
34852198 AATGACTAGTGTGAAATAT
63 AATGGCTAATGTGAAATAT
34852217 GTAGGCGATG
Statistics
Matches: 212, Mismatches: 12, Indels: 8
0.91 0.05 0.03
Matches are distributed among these distances:
144 71 0.33
146 1 0.00
147 2 0.01
148 89 0.42
149 2 0.01
150 47 0.22
ACGTcount: A:0.37, C:0.06, G:0.26, T:0.32
Consensus pattern (148 bp):
ATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAAT
GGCTAATGTGAAATATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAA
TATGTATGAGATATGCAT
Found at i:34852416 original size:37 final size:37
Alignment explanation
Indices: 34852366--34852473 Score: 171
Period size: 37 Copynumber: 2.9 Consensus size: 37
34852356 GGAAATATAT
34852366 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
34852403 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * * *
34852440 TCCAGGTAAGACCCGATAACTTCGTGAGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
34852474 TCATCTGAGC
Statistics
Matches: 66, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 66 1.00
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:34854130 original size:40 final size:40
Alignment explanation
Indices: 34853732--34854118 Score: 578
Period size: 40 Copynumber: 9.7 Consensus size: 40
34853722 GAGAGTTATA
*
34853732 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGA
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
34853772 TATATCCGGGCTAAGTCCC-AGAGAGCATTCGTGCTAGTGT
1 TATATCCGGGCTAAGTCCCGA-AGAGCATTCGTGCTAGTGT
34853812 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
34853852 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
34853892 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
* * * * *
34853932 TATATCTGGGCTAAGTCCCAAAGAGCATTCGTGTTGGTGA
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
* * *
34853972 TGTATCCGGGCTAAGTCCCGAAGAGCATTTGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
* * * *
34854012 TATATCCGGGCTAAGTCTCAAAGAGCATTTGTGCTAGAGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
* * ** *
34854052 TATATCAGGGTTAAGTCCCGAAGAGCATTCACGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
* *
34854092 TATAGCCGGGCTAGGTCCCGAAGAGCA
1 TATATCCGGGCTAAGTCCCGAAGAGCA
34854119 ATCATGCTGG
Statistics
Matches: 315, Mismatches: 30, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
39 1 0.00
40 313 0.99
41 1 0.00
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
Found at i:34854344 original size:25 final size:25
Alignment explanation
Indices: 34854294--34854344 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
34854284 TGTGTAAAAA
* *
34854294 CAAATGAATAGGGGCACTATGTGTG
1 CAAATGAATAGGGGCACTAAGAGTG
* *
34854319 CAAATGATTAGTGGCACTAAGAGTG
1 CAAATGAATAGGGGCACTAAGAGTG
34854344 C
1 C
34854345 GAGTTATTCA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.33, C:0.14, G:0.29, T:0.24
Consensus pattern (25 bp):
CAAATGAATAGGGGCACTAAGAGTG
Found at i:34854413 original size:29 final size:27
Alignment explanation
Indices: 34854332--34854431 Score: 83
Period size: 28 Copynumber: 3.6 Consensus size: 27
34854322 ATGATTAGTG
* * * *
34854332 GCACTAAGAGTGCGAGTTATTCAACTGA
1 GCACTATGTGTGCGAGTT-TTTAATTGA
**
34854360 GCACTATGTGTGCGAGATTGGTAATTGA
1 GCACTATGTGTGCGAG-TTTTTAATTGA
*
34854388 GGCACTATGTGTGCGAGTTCTTTAATCGA
1 -GCACTATGTGTGCGAGTT-TTTAATTGA
* *
34854417 GCGCTATGTCTGCGA
1 GCACTATGTGTGCGA
34854432 AATCAGTCAG
Statistics
Matches: 58, Mismatches: 11, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
28 34 0.59
29 24 0.41
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.30
Consensus pattern (27 bp):
GCACTATGTGTGCGAGTTTTTAATTGA
Found at i:34856778 original size:48 final size:48
Alignment explanation
Indices: 34856722--34857003 Score: 431
Period size: 48 Copynumber: 5.8 Consensus size: 48
34856712 TTAATGAATC
34856722 ATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTAT
1 ATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTAT
34856770 ATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTAT
1 ATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTAT
* * *
34856818 ATGTGGTAAAGCTGAATGGTTAATGTGAAATATATATATATGAGATATGTAT
1 ATGTGGTAAAGCCGAATGGCTAATGTG--A-A-ATATGTATGAGATATGTAT
*
34856870 ATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCAT
1 ATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTAT
* *
34856918 ATGTGGTAAAGTCGAATGG-TCAATGTGGAATATATATATGAGATATGTAT
1 ATGTGGTAAAGCCGAATGGCT-AATGT-GAA-ATATGTATGAGATATGTAT
*
34856968 ATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 ATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
34857004 GGCGATGTGT
Statistics
Matches: 213, Mismatches: 13, Indels: 16
0.88 0.05 0.07
Matches are distributed among these distances:
47 1 0.00
48 119 0.56
49 7 0.03
50 41 0.19
51 2 0.01
52 43 0.20
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.32
Consensus pattern (48 bp):
ATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTAT
Found at i:34856884 original size:148 final size:150
Alignment explanation
Indices: 34856722--34857000 Score: 474
Period size: 148 Copynumber: 1.9 Consensus size: 150
34856712 TTAATGAATC
*
34856722 ATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAAT
1 ATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCGAAT
* * *
34856787 GG-CTAATGT-GAA-ATATGTATGAGATATGTATATGTGGTAAAGCTGAATGGTTAATGTGAAAT
66 GGTC-AATGTGGAATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
34856849 ATATATATATGAGATATGTAT
130 ATATATATATGAGATATGTAT
*
34856870 ATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGTCGAAT
1 ATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCGAAT
*
34856935 GGTCAATGTGGAATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATA
66 GGTCAATGTGGAATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATA
34857000 T
131 T
34857001 GTAGGCGATG
Statistics
Matches: 122, Mismatches: 6, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
148 70 0.57
149 4 0.03
150 48 0.39
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.32
Consensus pattern (150 bp):
ATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCGAAT
GGTCAATGTGGAATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATA
TATATATATGAGATATGTAT
Found at i:34856891 original size:100 final size:97
Alignment explanation
Indices: 34856722--34857003 Score: 451
Period size: 100 Copynumber: 2.9 Consensus size: 97
34856712 TTAATGAATC
* * *
34856722 ATGTGGTAAAGCCGAATGGCTAATGTGAA-ATATGTATGAGATATGTATATGTGGTAAAGCCGAA
1 ATGTGGTAAAGCTGAATGGTTAATGTGAATATATATATGAGATATGTATATGTGGTAAAGCCGAA
*
34856786 TGGCTAATGTGAAATATGTATGAGATATGTAT
66 TGGCTAATGTGAAATATGTATGAGATATGCAT
34856818 ATGTGGTAAAGCTGAATGGTTAATGTGAAATATATATATATGAGATATGTATATGTGGTAAAGCC
1 ATGTGGTAAAGCTGAATGGTTAATGTG--A-ATATATATATGAGATATGTATATGTGGTAAAGCC
34856883 GAATGGCTAATGTGAAATATGTATGAGATATGCAT
63 GAATGGCTAATGTGAAATATGTATGAGATATGCAT
*
34856918 ATGTGGTAAAG-TCGAATGGTCAATGTGGAATATATATATGAGATATGTATATGTGGTAAAGCCG
1 ATGTGGTAAAGCT-GAATGGTTAATGT-GAATATATATATGAGATATGTATATGTGGTAAAGCCG
*
34856982 AATGGCTAGTGTGAAATATGTA
64 AATGGCTAATGTGAAATATGTA
34857004 GGCGATGTGT
Statistics
Matches: 174, Mismatches: 6, Indels: 10
0.92 0.03 0.05
Matches are distributed among these distances:
96 25 0.14
98 57 0.33
99 3 0.02
100 88 0.51
101 1 0.01
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.32
Consensus pattern (97 bp):
ATGTGGTAAAGCTGAATGGTTAATGTGAATATATATATGAGATATGTATATGTGGTAAAGCCGAA
TGGCTAATGTGAAATATGTATGAGATATGCAT
Found at i:34857258 original size:37 final size:37
Alignment explanation
Indices: 34857150--34857258 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
34857140 GGAAATATAT
*
34857150 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
*
34857187 TCCAGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
34857224 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
34857259 CATCTGAGCT
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.24, C:0.19, G:0.30, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:34859014 original size:52 final size:52
Alignment explanation
Indices: 34858929--34859032 Score: 129
Period size: 52 Copynumber: 2.0 Consensus size: 52
34858919 ATACCCAATT
* * * * * *
34858929 ACATGTATCGCATCCATTATGAACTCGACCCAACTTAACGAGCTCAGATGCC
1 ACATGTAACACATCCATCATGAACCCGACCCAACTCAACAAGCTCAGATGCC
*
34858981 ACATGTAACACATCCATCATGAACCCAGA-CCAACTCAACAAGCTCGGATGCC
1 ACATGTAACACATCCATCATGAACCC-GACCCAACTCAACAAGCTCAGATGCC
34859033 GCATACATAT
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
52 42 0.95
53 2 0.05
ACGTcount: A:0.34, C:0.33, G:0.14, T:0.19
Consensus pattern (52 bp):
ACATGTAACACATCCATCATGAACCCGACCCAACTCAACAAGCTCAGATGCC
Found at i:34865919 original size:6 final size:6
Alignment explanation
Indices: 34865908--34865936 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
34865898 TAAAATTTGC
34865908 TAAAAA TAAAAA TAAAAA TAAAAA TAAAA
1 TAAAAA TAAAAA TAAAAA TAAAAA TAAAA
34865937 GTAGTTTTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (6 bp):
TAAAAA
Found at i:34868013 original size:55 final size:55
Alignment explanation
Indices: 34867912--34868041 Score: 143
Period size: 55 Copynumber: 2.4 Consensus size: 55
34867902 CCTGTGTTAA
* * * **
34867912 TTTAACAGGTTCGACCACGGGTGTTCCACACGGGTGTGTCAAACGCCCGTGTTGT
1 TTTAACAAGCTCGACCACGGGTCTTCCACACGGGCATGTCAAACGCCCGTGTTGT
* * ** *
34867967 TTTAACAAGCTCGCCCACGGTTCTTCCACACGGGCATGTCGCACGCCTGTGTTGT
1 TTTAACAAGCTCGACCACGGGTCTTCCACACGGGCATGTCAAACGCCCGTGTTGT
** *
34868022 TTTGGCAGGCTCGACCACGG
1 TTTAACAAGCTCGACCACGG
34868042 CCATATCGCA
Statistics
Matches: 61, Mismatches: 14, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
55 61 1.00
ACGTcount: A:0.17, C:0.29, G:0.28, T:0.26
Consensus pattern (55 bp):
TTTAACAAGCTCGACCACGGGTCTTCCACACGGGCATGTCAAACGCCCGTGTTGT
Found at i:34878468 original size:37 final size:37
Alignment explanation
Indices: 34878415--34878515 Score: 166
Period size: 37 Copynumber: 2.7 Consensus size: 37
34878405 CAAATAGTCC
*
34878415 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
* **
34878452 CCACACATAGTCATCGGGTCTTACCCGGACCTAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
34878489 CCACACGTAGTCATCGGGTCTTACCCG
1 CCACACGTAGTCATCGGGTCTTACCCG
34878516 TAATATATTT
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 59 1.00
ACGTcount: A:0.24, C:0.34, G:0.19, T:0.24
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:34878710 original size:48 final size:48
Alignment explanation
Indices: 34878648--34878938 Score: 465
Period size: 48 Copynumber: 6.1 Consensus size: 48
34878638 TTCGGCCACA
* * *
34878648 ACATACACACATCTCTTACATATTTCACACTAGCCATTCGGCTTTACC
1 ACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACC
* * * *
34878696 ACATATACATATCTCACACAAATGTCACACTAGCCATGCGGCTTTACC
1 ACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACC
*
34878744 ACATATACATATCTCATTCATATTTCACACTAGCCATTCGGCTTTACC
1 ACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACC
*
34878792 ACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACC
1 ACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACC
*
34878840 ACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACC
1 ACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACC
* * *
34878888 ACATATACATATCTCATACATATTTCACATTAGCTATTCGGCTTTATC
1 ACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACC
34878936 ACA
1 ACA
34878939 CACATATATA
Statistics
Matches: 227, Mismatches: 16, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 227 1.00
ACGTcount: A:0.31, C:0.29, G:0.07, T:0.33
Consensus pattern (48 bp):
ACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACC
Found at i:34881481 original size:30 final size:30
Alignment explanation
Indices: 34881447--34881514 Score: 136
Period size: 30 Copynumber: 2.3 Consensus size: 30
34881437 ACAACTTTTG
34881447 TTTCTCCCCCCATCAACTAGTATTTTATTA
1 TTTCTCCCCCCATCAACTAGTATTTTATTA
34881477 TTTCTCCCCCCATCAACTAGTATTTTATTA
1 TTTCTCCCCCCATCAACTAGTATTTTATTA
34881507 TTTCTCCC
1 TTTCTCCC
34881515 ACAACATTTT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 38 1.00
ACGTcount: A:0.21, C:0.32, G:0.03, T:0.44
Consensus pattern (30 bp):
TTTCTCCCCCCATCAACTAGTATTTTATTA
Found at i:34884917 original size:28 final size:28
Alignment explanation
Indices: 34884872--34884993 Score: 108
Period size: 29 Copynumber: 4.3 Consensus size: 28
34884862 GTGATGCTAT
*
34884872 GTGATTTGGGCC-AGATGGGCCATATAAA
1 GTGAATTGGGCCTA-ATGGGCCATATAAA
* *
34884900 G-GAGATTGGGCCTAATGGGCCATAGGAAT
1 GTGA-ATTGGGCCTAATGGGCCATA-TAAA
*
34884929 GTGAATTCGGCCTAATGGGCCATATGAAA
1 GTGAATTGGGCCTAATGGGCCATAT-AAA
* *
34884958 GTGAATTGGG-CTGGATGGGCCATGTAAA
1 GTGAATTGGGCCT-AATGGGCCATATAAA
34884986 -TGAGATTG
1 GTGA-ATTG
34884994 ACTACATAAA
Statistics
Matches: 78, Mismatches: 9, Indels: 14
0.77 0.09 0.14
Matches are distributed among these distances:
27 5 0.06
28 27 0.35
29 44 0.56
30 2 0.03
ACGTcount: A:0.28, C:0.13, G:0.34, T:0.25
Consensus pattern (28 bp):
GTGAATTGGGCCTAATGGGCCATATAAA
Found at i:34889185 original size:27 final size:27
Alignment explanation
Indices: 34889168--34889345 Score: 115
Period size: 27 Copynumber: 6.6 Consensus size: 27
34889158 ATATTAAGTC
34889168 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
* ** *
34889195 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTCAGTGCTATATAATCAACT
* * *
34889222 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
* *** ** *
34889250 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTCAGTGCTATATAATCAACT
* * **
34889277 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTCAGTGCTAT-ATAATCAACT
* * * * *
34889304 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTCAGTGCTATATAATCAACT
*
34889331 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
34889346 GTACAATTTA
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 103 0.81
28 24 0.19
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:34889307 original size:82 final size:81
Alignment explanation
Indices: 34889189--34889344 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
34889179 TGCTATATAA
* *
34889189 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
34889254 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
34889271 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
34889335 CACTTAGTGC
65 CACTTAGTGC
34889345 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:34889328 original size:54 final size:54
Alignment explanation
Indices: 34889168--34889344 Score: 205
Period size: 54 Copynumber: 3.3 Consensus size: 54
34889158 ATATTAAGTC
* * * *
34889168 CGCACACTCAGTGCTAT-ATAATCAACTCGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGC-ATCATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
* ** * *
34889222 CGCACACTTAGTGC-TACATAGTCAAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCAT-CATAATC-AACTCGCACACTTAGTGCAACATAGTCAAAT
* **
34889277 CGCACACTTAGTGCATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCATCATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
34889331 CGCACACTTAGTGC
1 CGCACACTTAGTGC
34889345 TGTACAATTT
Statistics
Matches: 104, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
52 1 0.01
54 57 0.55
55 45 0.43
56 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (54 bp):
CGCACACTTAGTGCATCATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
Found at i:34897274 original size:27 final size:27
Alignment explanation
Indices: 34897243--34897420 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
34897233 ATATTAAGTC
* * * *
34897243 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
34897270 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
34897297 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
34897325 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
34897352 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
34897379 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
34897406 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
34897421 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:34897382 original size:82 final size:81
Alignment explanation
Indices: 34897264--34897419 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
34897254 TGCTATATAA
* *
34897264 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
34897329 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
34897346 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
34897410 CACTTAGTGC
65 CACTTAGTGC
34897420 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:34903539 original size:16 final size:15
Alignment explanation
Indices: 34903520--34903553 Score: 59
Period size: 16 Copynumber: 2.2 Consensus size: 15
34903510 GCAAAATCCA
34903520 AAATGCCGAAAAGCTC
1 AAATGCCGAAAAGC-C
34903536 AAATGCCGAAAAGCC
1 AAATGCCGAAAAGCC
34903551 AAA
1 AAA
34903554 AGTTTGGCTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 4 0.22
16 14 0.78
ACGTcount: A:0.50, C:0.24, G:0.18, T:0.09
Consensus pattern (15 bp):
AAATGCCGAAAAGCC
Found at i:34903859 original size:29 final size:30
Alignment explanation
Indices: 34903826--34903895 Score: 94
Period size: 28 Copynumber: 2.4 Consensus size: 30
34903816 ATAGGAACCT
*
34903826 GATGGGCCATATGAAGGTGA-ATTGGGCC-A
1 GATGGGCCATATGAA-ATGAGATTGGGCCTA
34903855 GATGGGCCATAT-AAATGAGATTGGGCCTA
1 GATGGGCCATATGAAATGAGATTGGGCCTA
34903884 G-TGGGCCATATG
1 GATGGGCCATATG
34903896 CATGGATGTA
Statistics
Matches: 37, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
27 3 0.08
28 20 0.54
29 14 0.38
ACGTcount: A:0.27, C:0.14, G:0.36, T:0.23
Consensus pattern (30 bp):
GATGGGCCATATGAAATGAGATTGGGCCTA
Found at i:34904386 original size:22 final size:22
Alignment explanation
Indices: 34904358--34904431 Score: 76
Period size: 22 Copynumber: 3.1 Consensus size: 22
34904348 ACCGACGGCT
34904358 TTTAAGAGGTAAACATCAATTG
1 TTTAAGAGGTAAACATCAATTG
* * *
34904380 TTTAAGAGGTAAACATTAGTCCTTCAA
1 TTTAAGAGGTAAACATCA---ATT--G
34904407 TTTAAGAGGTAAACATCAATTG
1 TTTAAGAGGTAAACATCAATTG
34904429 TTT
1 TTT
34904432 TTAGTAATGT
Statistics
Matches: 41, Mismatches: 6, Indels: 10
0.72 0.11 0.18
Matches are distributed among these distances:
22 20 0.49
24 2 0.05
25 2 0.05
27 17 0.41
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.35
Consensus pattern (22 bp):
TTTAAGAGGTAAACATCAATTG
Found at i:34906463 original size:29 final size:29
Alignment explanation
Indices: 34906431--34906495 Score: 85
Period size: 29 Copynumber: 2.2 Consensus size: 29
34906421 CACAGGCTTT
* *
34906431 CACATGGTTGTGTTAAGCACACGAGTAGA
1 CACATGGCTGTGTGAAGCACACGAGTAGA
* *
34906460 CACATGACTGTGTGAAGCACATGAGTAGA
1 CACATGGCTGTGTGAAGCACACGAGTAGA
*
34906489 CATATGG
1 CACATGG
34906496 GCAGACACAA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.32, C:0.17, G:0.28, T:0.23
Consensus pattern (29 bp):
CACATGGCTGTGTGAAGCACACGAGTAGA
Found at i:34907096 original size:40 final size:40
Alignment explanation
Indices: 34907052--34907219 Score: 126
Period size: 40 Copynumber: 4.2 Consensus size: 40
34907042 ATATTTTTTG
* *
34907052 TTGAATGCACATACGTGCCCCTGTTTGTCCTTCGAG-AGCC
1 TTGAATGCACATACGTGCCCCTGTTTGTACTTCG-GTACCC
* * * *
34907092 TTGAATGCACATACATGCCCTTTTTTGTACTTTGGTACCC
1 TTGAATGCACATACGTGCCCCTGTTTGTACTTCGGTACCC
* * * * * * * *
34907132 CTGAATGCATATACGTGCCCTTGGTTGCACTTTGATGCCC
1 TTGAATGCACATACGTGCCCCTGTTTGTACTTCGGTACCC
* * * * *
34907172 CTGAATGCACATATGTGTCCCT-TTTGCACTTTGGTGACCC
1 TTGAATGCACATACGTGCCCCTGTTTGTACTTCGGT-ACCC
34907212 -TGAATGCA
1 TTGAATGCA
34907220 TATTTGTGCT
Statistics
Matches: 105, Mismatches: 21, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
39 20 0.19
40 85 0.81
ACGTcount: A:0.19, C:0.27, G:0.20, T:0.34
Consensus pattern (40 bp):
TTGAATGCACATACGTGCCCCTGTTTGTACTTCGGTACCC
Found at i:34907180 original size:20 final size:19
Alignment explanation
Indices: 34907157--34907253 Score: 70
Period size: 20 Copynumber: 4.9 Consensus size: 19
34907147 TGCCCTTGGT
34907157 TGCACTTTGATGCCCCTGAA
1 TGCACTTTG-TGCCCCTGAA
* * **
34907177 TGCACATATGTGTCCCT-TT
1 TGCAC-TTTGTGCCCCTGAA
*
34907196 TGCACTTTGGTGACCCTGAA
1 TGCACTTT-GTGCCCCTGAA
* * *
34907216 TGCATATTTGTGCTCCTGAT
1 TGCA-CTTTGTGCCCCTGAA
34907236 TGCACTTTGGTGCCCCTG
1 TGCACTTT-GTGCCCCTG
34907254 TTATGCATTT
Statistics
Matches: 58, Mismatches: 14, Indels: 10
0.71 0.17 0.12
Matches are distributed among these distances:
18 2 0.03
19 15 0.26
20 35 0.60
21 6 0.10
ACGTcount: A:0.15, C:0.27, G:0.22, T:0.36
Consensus pattern (19 bp):
TGCACTTTGTGCCCCTGAA
Found at i:34907245 original size:40 final size:40
Alignment explanation
Indices: 34907120--34907253 Score: 141
Period size: 40 Copynumber: 3.4 Consensus size: 40
34907110 CCTTTTTTGT
* *
34907120 ACTTTGGT-ACCCCTGAATGCATATACGTGC-CCTTGGTTGC
1 ACTTTGGTGA-CCCTGAATGCATATATGTGCTCC-TGATTGC
* * * *
34907160 ACTTTGATGCCCCTGAATGCACATATGTG-TCCCT-TTTGC
1 ACTTTGGTGACCCTGAATGCATATATGTGCT-CCTGATTGC
*
34907199 ACTTTGGTGACCCTGAATGCATATTTGTGCTCCTGATTGC
1 ACTTTGGTGACCCTGAATGCATATATGTGCTCCTGATTGC
*
34907239 ACTTTGGTGCCCCTG
1 ACTTTGGTGACCCTG
34907254 TTATGCATTT
Statistics
Matches: 78, Mismatches: 11, Indels: 10
0.79 0.11 0.10
Matches are distributed among these distances:
39 32 0.41
40 44 0.56
41 2 0.03
ACGTcount: A:0.16, C:0.27, G:0.22, T:0.35
Consensus pattern (40 bp):
ACTTTGGTGACCCTGAATGCATATATGTGCTCCTGATTGC
Found at i:34909228 original size:48 final size:48
Alignment explanation
Indices: 34909156--34909297 Score: 212
Period size: 48 Copynumber: 3.0 Consensus size: 48
34909146 TTAGGGGTTA
* *
34909156 CATTGATTTGGCTTCAGGCCATGATATTGGCACTTCGGGTGCAAGATT
1 CATTGAGTGGGCTTCAGGCCATGATATTGGCACTTCGGGTGCAAGATT
* * * *
34909204 TATTGAGTGGGCTTCGGGCCATGATATTGGCACTTCAGGTGCGAGATT
1 CATTGAGTGGGCTTCAGGCCATGATATTGGCACTTCGGGTGCAAGATT
* *
34909252 CATTGAGTTGGCTTCAGGCCATGATATTGGCACTTAGGGTGCAAGA
1 CATTGAGTGGGCTTCAGGCCATGATATTGGCACTTCGGGTGCAAGA
34909298 CTCTCGAGTA
Statistics
Matches: 82, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
48 82 1.00
ACGTcount: A:0.21, C:0.18, G:0.30, T:0.31
Consensus pattern (48 bp):
CATTGAGTGGGCTTCAGGCCATGATATTGGCACTTCGGGTGCAAGATT
Found at i:34918362 original size:45 final size:46
Alignment explanation
Indices: 34918197--34918361 Score: 156
Period size: 45 Copynumber: 3.6 Consensus size: 46
34918187 TGTGTGCTAG
* * *
34918197 TGTAAGACATGTCTCGGACATGCATCAGCCAC-ATTATGAGAGCCAA
1 TGTAAGACATGTCTGGGACATGCATCAGCCTCGA-GATGAGAGCCAA
* * * * * * *
34918243 TGTAAGACCATGTTTGGGACATGGCATCGGCATTGAGACGAGAGCTAG
1 TGTAAGA-CATGTCTGGGACAT-GCATCAGCCTCGAGATGAGAGCCAA
* * *
34918291 TGTATGACATGTCTAGGACATGCATC-GCCTCGAGATGTA-AGCCAC
1 TGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATG-AGAGCCAA
34918336 TGTAAGACATGTCTGGGACATGCATC
1 TGTAAGACATGTCTGGGACATGCATC
34918362 GGCTCCAAGA
Statistics
Matches: 95, Mismatches: 20, Indels: 9
0.77 0.16 0.07
Matches are distributed among these distances:
45 36 0.38
46 13 0.14
47 24 0.25
48 21 0.22
49 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.24
Consensus pattern (46 bp):
TGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATGAGAGCCAA
Found at i:34918392 original size:45 final size:44
Alignment explanation
Indices: 34918195--34918392 Score: 128
Period size: 45 Copynumber: 4.3 Consensus size: 44
34918185 ATTGTGTGCT
* * ** *
34918195 AGTGTAAGACATGTCTCGGACATGCATCAGCCACATTATGAGAGCC
1 AGTGTAAGACATGTCTAGGACATGCATC-GCCTCAAGATG-TAGCC
* * * * ** * * *
34918241 AATGTAAGACCATGTTTGGGACATGGCATCGGCATTGAGACGAGAGCT
1 AGTGTAAGA-CATGTCTAGGACAT-GCATC-GCCTCAAGATG-TAGCC
* *
34918289 AGTGTATGACATGTCTAGGACATGCATCGCCTCGAGATGTAAGCC
1 AGTGTAAGACATGTCTAGGACATGCATCGCCTCAAGATGT-AGCC
* * * *
34918334 ACTGTAAGACATGTCTGGGACATGCATCGGCTCCAAGATGT-GTC
1 AGTGTAAGACATGTCTAGGACATGCATCGCCT-CAAGATGTAGCC
34918378 AGTGTAAGACCATGT
1 AGTGTAAGA-CATGT
34918393 TTCAGACATG
Statistics
Matches: 119, Mismatches: 28, Indels: 11
0.75 0.18 0.07
Matches are distributed among these distances:
44 10 0.08
45 44 0.37
46 20 0.17
47 24 0.20
48 21 0.18
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.24
Consensus pattern (44 bp):
AGTGTAAGACATGTCTAGGACATGCATCGCCTCAAGATGTAGCC
Found at i:34932476 original size:48 final size:48
Alignment explanation
Indices: 34932361--34932592 Score: 207
Period size: 48 Copynumber: 4.8 Consensus size: 48
34932351 AAATCCCGTA
* * * *
34932361 TAAGACGATATCT-AGGATATGGTATTGGCATCAATATGAGATCCCTTG
1 TAAGACCATATCTGA-GATATGGCATTGGCATCGATATGAGATCCCATG
** * * * ** *
34932409 TAAGACTGTGTCTGGGATATGGTATAAGCATCGAGATGAGAT-CCAGTG
1 TAAGACCATATCTGAGATATGGCATTGGCATCGATATGAGATCCCA-TG
** ** *
34932457 TAAGACCATATCTGAGATATAACACCGGCATCGATATGAAATCCCATG
1 TAAGACCATATCTGAGATATGGCATTGGCATCGATATGAGATCCCATG
* * * *
34932505 TAAGACCATATTTGGGATATGGCATTGGCATTGACATGAGATCCCATG
1 TAAGACCATATCTGAGATATGGCATTGGCATCGATATGAGATCCCATG
* * * *
34932553 AAAGACCATATCTAAGATATGGCATTGTCATTGATATGAG
1 TAAGACCATATCTGAGATATGGCATTGGCATCGATATGAG
34932593 GTCTCGTATA
Statistics
Matches: 145, Mismatches: 36, Indels: 6
0.78 0.19 0.03
Matches are distributed among these distances:
47 2 0.01
48 140 0.97
49 3 0.02
ACGTcount: A:0.33, C:0.16, G:0.23, T:0.28
Consensus pattern (48 bp):
TAAGACCATATCTGAGATATGGCATTGGCATCGATATGAGATCCCATG
Found at i:34932589 original size:96 final size:96
Alignment explanation
Indices: 34932362--34932591 Score: 237
Period size: 96 Copynumber: 2.4 Consensus size: 96
34932352 AATCCCGTAT
* * * * * * ** *
34932362 AAGACGATATCTAGGATATGGTATTGGCATCAATATGAGATCCCTTGTAAGACTGTGTCTGGGAT
1 AAGACCATATCTAAGATATGGCATTGGCATCGATATGAAATCCCATGTAAGACCATATCTGGGAT
* * *
34932427 ATGGTATAAGCATCGAGATGAGATCCAGTGT
66 ATGGCATAAGCATCGACATGAGATCCAGTGA
* ** ** *
34932458 AAGACCATATCTGAGATATAACACCGGCATCGATATGAAATCCCATGTAAGACCATATTTGGGAT
1 AAGACCATATCTAAGATATGGCATTGGCATCGATATGAAATCCCATGTAAGACCATATCTGGGAT
** *
34932523 ATGGCATTGGCATTGACATGAGATCCCA-TGA
66 ATGGCATAAGCATCGACATGAGAT-CCAGTGA
* *
34932554 AAGACCATATCTAAGATATGGCATTGTCATTGATATGA
1 AAGACCATATCTAAGATATGGCATTGGCATCGATATGA
34932592 GGTCTCGTAT
Statistics
Matches: 105, Mismatches: 28, Indels: 2
0.78 0.21 0.01
Matches are distributed among these distances:
96 102 0.97
97 3 0.03
ACGTcount: A:0.33, C:0.16, G:0.23, T:0.28
Consensus pattern (96 bp):
AAGACCATATCTAAGATATGGCATTGGCATCGATATGAAATCCCATGTAAGACCATATCTGGGAT
ATGGCATAAGCATCGACATGAGATCCAGTGA
Found at i:34939074 original size:37 final size:37
Alignment explanation
Indices: 34939015--34939160 Score: 256
Period size: 37 Copynumber: 3.9 Consensus size: 37
34939005 AGCTCAGACG
* *
34939015 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
34939052 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
34939089 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
34939126 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
34939161 ATATATTTCC
Statistics
Matches: 106, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 106 1.00
ACGTcount: A:0.26, C:0.32, G:0.19, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:34939419 original size:47 final size:47
Alignment explanation
Indices: 34939367--34939560 Score: 264
Period size: 47 Copynumber: 4.1 Consensus size: 47
34939357 CATACATATT
* ** *
34939367 TCACATTAGCCATTCGGTTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTACCACATATATGCATGTTCACATTCA
* * *
34939414 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTACCACATATATGCATGTTCACATTCA
* *
34939461 TCGCATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTACCACATATATGCATGTTCACATTCA
* **
34939508 TCACATTGGCCATTCGGCCTTATCC-CATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTA-CCACATATATGCATGTTCACATTCA
34939555 TCACAT
1 TCACAT
34939561 AAAATCCTAA
Statistics
Matches: 131, Mismatches: 15, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
47 130 0.99
48 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.11, T:0.34
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTACCACATATATGCATGTTCACATTCA
Found at i:34944015 original size:40 final size:40
Alignment explanation
Indices: 34943627--34944008 Score: 512
Period size: 40 Copynumber: 9.6 Consensus size: 40
34943617 GCATGATTGT
* * * *
34943627 TCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATGC
1 TCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGC
** * * *
34943667 TCTTCGGGGTTTAGCACGAATATATCACTAGCACGAATGC
1 TCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGC
* * * *
34943707 TCTTCGGAACTTAGTCTGGATACATCACTAGCATGAATGC
1 TCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGC
* *
34943747 TCTTCGGGACTTAGCCCGGATATATCACTAGCGCGAATGC
1 TCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGC
** * *
34943787 TCTTCGAAACTTAGTCCGGATACATCACTAGCATGAATGC
1 TCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGC
34943827 TCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGC
1 TCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGC
* *
34943867 CCTTCGGGACTTAGTCCGGATACATCACTAGCACGAATGC
1 TCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGC
* *
34943907 CCTTCGGGACTTAGTCCGGATACATCACTAGCACGAATGC
1 TCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGC
* * * * *
34943947 TCTTCGGAACTTAGTCCGGATACAACACTAGCACAAATGT
1 TCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGC
34943987 TCTTCGGGACTTAGCCCGGATA
1 TCTTCGGGACTTAGCCCGGATA
34944009 TAACACTCTC
Statistics
Matches: 301, Mismatches: 41, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 301 1.00
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGC
Found at i:34945371 original size:37 final size:37
Alignment explanation
Indices: 34945285--34945428 Score: 254
Period size: 37 Copynumber: 3.9 Consensus size: 37
34945275 GCTCAGACGA
* * *
34945285 AATCTCCACATGAAGTTATCGGGTCTTACCCGGACA-
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
34945321 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
34945358 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
34945395 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
34945429 ATATATTTCC
Statistics
Matches: 104, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
36 33 0.32
37 71 0.68
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.24
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
Found at i:34945687 original size:47 final size:47
Alignment explanation
Indices: 34945635--34945828 Score: 262
Period size: 47 Copynumber: 4.1 Consensus size: 47
34945625 CATACATATT
* * * *
34945635 TCACATTAGCCATTCGGCTTTACCATATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTACCACATATATGCATGTTCACATTCA
* * *
34945682 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTACCACATATATGCATGTTCACATTCA
* *
34945729 TCGCATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTACCACATATATGCATGTTCACATTCA
* * * **
34945776 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTACCACATATATGCATGTTCACATTCA
34945823 TCACAT
1 TCACAT
34945829 AAAATCCTAA
Statistics
Matches: 132, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 132 1.00
ACGTcount: A:0.26, C:0.28, G:0.11, T:0.34
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTACCACATATATGCATGTTCACATTCA
Found at i:34949581 original size:19 final size:18
Alignment explanation
Indices: 34949523--34949581 Score: 52
Period size: 19 Copynumber: 3.3 Consensus size: 18
34949513 ATCATCTCAT
34949523 ATATATCACAATTAT-AAC
1 ATATA-CACAATTATAAAC
* *
34949541 AT-TACATAA-TATAAAT
1 ATATACACAATTATAAAC
34949557 ATTATACACAATTATAAAGC
1 A-TATACACAATTATAAA-C
34949577 ATATA
1 ATATA
34949582 TATAAAAAGA
Statistics
Matches: 32, Mismatches: 4, Indels: 9
0.71 0.09 0.20
Matches are distributed among these distances:
15 3 0.09
16 7 0.22
17 3 0.09
18 8 0.25
19 10 0.31
20 1 0.03
ACGTcount: A:0.53, C:0.12, G:0.02, T:0.34
Consensus pattern (18 bp):
ATATACACAATTATAAAC
Found at i:34968868 original size:51 final size:50
Alignment explanation
Indices: 34968740--34968939 Score: 199
Period size: 50 Copynumber: 4.0 Consensus size: 50
34968730 TATTGTGAGG
*** * *
34968740 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTG-TT-GG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCA-ATAGCTTCGA
* * * *
34968789 TCGCATGTTTAGTACTAAGTGCAGGCTACTATGCGTACCTAATAACTTCGA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACC-AATAGCTTCGA
* * * * * * *
34968840 TCTCGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGAT-GGTTAGG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCA-ATAGCTTCGA
34968890 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAAATAGCTTCG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACC-AATAGCTTCG
34968940 GCTACAAGTG
Statistics
Matches: 120, Mismatches: 25, Indels: 10
0.77 0.16 0.06
Matches are distributed among these distances:
49 35 0.29
50 44 0.37
51 41 0.34
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (50 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAATAGCTTCGA
Found at i:34968939 original size:101 final size:100
Alignment explanation
Indices: 34968743--34968939 Score: 313
Period size: 101 Copynumber: 2.0 Consensus size: 100
34968733 TGTGAGGTCA
* * *
34968743 CGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTGTTGGTCGCATGTTTAGTACTAAG
1 CGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATGGTTGGTCACATGTGTAGTACTAAG
*
34968808 TGCAGGCTACTATGCGTACCTAATAACTTCGATCT
66 TGCAGGCTACTATGCGTACCAAATAACTTCGATCT
* * *
34968843 CGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAA
1 CGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATGGTT-GGTCACATGTGTAGTACTAA
*
34968908 GTGCAGGCTACTATGCGTACCAAATAGCTTCG
65 GTGCAGGCTACTATGCGTACCAAATAACTTCG
34968940 GCTACAAGTG
Statistics
Matches: 88, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
100 41 0.47
101 47 0.53
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.30
Consensus pattern (100 bp):
CGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATGGTTGGTCACATGTGTAGTACTAAG
TGCAGGCTACTATGCGTACCAAATAACTTCGATCT
Done.