Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 108 of 362
Found at i:35478308 original size:22 final size:22
Alignment explanation
Indices: 35478283--35478356 Score: 62
Period size: 22 Copynumber: 3.2 Consensus size: 22
35478273 CATATAATTG
35478283 ATTTTTTATATTGTTGATGTTT
1 ATTTTTTATATTGTTGATGTTT
* *
35478305 ATTTTACGTCT-TA-TGTTTGAGGTTG
1 ATTTT---T-TATATTG-TTGATGTTT
*
35478330 ATTTTTTATATTGTTCATGTTT
1 ATTTTTTATATTGTTGATGTTT
35478352 ATTTT
1 ATTTT
35478357 ACGTTTTATG
Statistics
Matches: 40, Mismatches: 5, Indels: 14
0.68 0.08 0.24
Matches are distributed among these distances:
21 1 0.03
22 19 0.47
23 2 0.05
24 2 0.05
25 15 0.38
26 1 0.03
ACGTcount: A:0.18, C:0.04, G:0.15, T:0.64
Consensus pattern (22 bp):
ATTTTTTATATTGTTGATGTTT
Found at i:35478332 original size:47 final size:47
Alignment explanation
Indices: 35478280--35478375 Score: 174
Period size: 47 Copynumber: 2.0 Consensus size: 47
35478270 GTACATATAA
*
35478280 TTGATTTTTTATATTGTTGATGTTTATTTTACGTCTTATGTTTGAGG
1 TTGATTTTTTATATTGTTCATGTTTATTTTACGTCTTATGTTTGAGG
*
35478327 TTGATTTTTTATATTGTTCATGTTTATTTTACGTTTTATGTTTGAGG
1 TTGATTTTTTATATTGTTCATGTTTATTTTACGTCTTATGTTTGAGG
35478374 TT
1 TT
35478376 TATGATAGTC
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.17, C:0.04, G:0.18, T:0.61
Consensus pattern (47 bp):
TTGATTTTTTATATTGTTCATGTTTATTTTACGTCTTATGTTTGAGG
Found at i:35478378 original size:25 final size:25
Alignment explanation
Indices: 35478296--35478378 Score: 75
Period size: 25 Copynumber: 3.4 Consensus size: 25
35478286 TTTTATATTG
* *
35478296 TTGATGTTTATTTTACGTCTTATGT
1 TTGAGGTTTATTTTACGTTTTATGT
* *
35478321 TTGAGGTTGATTTT---TTATAT-T
1 TTGAGGTTTATTTTACGTTTTATGT
* *
35478342 GTTCATGTTTATTTTACGTTTTATGT
1 -TTGAGGTTTATTTTACGTTTTATGT
35478368 TTGAGGTTTAT
1 TTGAGGTTTAT
35478379 GATAGTCTTT
Statistics
Matches: 43, Mismatches: 10, Indels: 10
0.68 0.16 0.16
Matches are distributed among these distances:
21 1 0.02
22 15 0.35
25 26 0.60
26 1 0.02
ACGTcount: A:0.17, C:0.05, G:0.18, T:0.60
Consensus pattern (25 bp):
TTGAGGTTTATTTTACGTTTTATGT
Found at i:35494196 original size:18 final size:18
Alignment explanation
Indices: 35494175--35494210 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
35494165 TGAATTGGTT
*
35494175 TTGCTATCTAAATTAATG
1 TTGCTATCTAAACTAATG
*
35494193 TTGCTCTCTAAACTAATG
1 TTGCTATCTAAACTAATG
35494211 AAATTGTTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.31, C:0.17, G:0.11, T:0.42
Consensus pattern (18 bp):
TTGCTATCTAAACTAATG
Found at i:35504844 original size:15 final size:14
Alignment explanation
Indices: 35504824--35504859 Score: 54
Period size: 14 Copynumber: 2.5 Consensus size: 14
35504814 TATTAACATA
35504824 AAAATTTAAAATTAG
1 AAAATTT-AAATTAG
*
35504839 AAAATTTTAATTAG
1 AAAATTTAAATTAG
35504853 AAAATTT
1 AAAATTT
35504860 CTTCTTAACA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
14 13 0.65
15 7 0.35
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.39
Consensus pattern (14 bp):
AAAATTTAAATTAG
Found at i:35507537 original size:23 final size:23
Alignment explanation
Indices: 35507511--35507691 Score: 113
Period size: 23 Copynumber: 7.9 Consensus size: 23
35507501 GGACTCACCA
*
35507511 CAGCTTGTATGAGCTTACTGATT
1 CAGCTCGTATGAGCTTACTGATT
* *
35507534 CAGCTCGTAAGAGCTTACTGTTT
1 CAGCTCGTATGAGCTTACTGATT
* **
35507557 CAGCTCAT-TGCAGCTTACCAATT
1 CAGCTCGTATG-AGCTTACTGATT
*
35507580 CAGCTTG-ATAGAGCTTACT-ATTT
1 CAGCTCGTAT-GAGCTTACTGA-TT
* ** *
35507603 CAGCTCATCGGAGCTTACCGATT
1 CAGCTCGTATGAGCTTACTGATT
* *
35507626 CAGCTCG-ATGGAGTTTACTGTTT
1 CAGCTCGTAT-GAGCTTACTGATT
* * *
35507649 TAGCTCAT-TGGAGCTTACCGATT
1 CAGCTCGTAT-GAGCTTACTGATT
*
35507672 CAGCTC-AATAGAGCTTACTG
1 CAGCTCGTAT-GAGCTTACTG
35507692 TCCATCAACT
Statistics
Matches: 118, Mismatches: 31, Indels: 18
0.71 0.19 0.11
Matches are distributed among these distances:
22 2 0.02
23 114 0.97
24 2 0.02
ACGTcount: A:0.23, C:0.23, G:0.20, T:0.34
Consensus pattern (23 bp):
CAGCTCGTATGAGCTTACTGATT
Found at i:35507581 original size:46 final size:46
Alignment explanation
Indices: 35507521--35507692 Score: 238
Period size: 46 Copynumber: 3.7 Consensus size: 46
35507511 CAGCTTGTAT
*
35507521 GAGCTTACTGATTCAGCTCG-TAAGAGCTTACTGTTTCAGCTCATTG
1 GAGCTTACCGATTCAGCTCGAT-AGAGCTTACTGTTTCAGCTCATTG
* * * * *
35507567 CAGCTTACCAATTCAGCTTGATAGAGCTTACTATTTCAGCTCATCG
1 GAGCTTACCGATTCAGCTCGATAGAGCTTACTGTTTCAGCTCATTG
* * *
35507613 GAGCTTACCGATTCAGCTCGATGGAGTTTACTGTTTTAGCTCATTG
1 GAGCTTACCGATTCAGCTCGATAGAGCTTACTGTTTCAGCTCATTG
*
35507659 GAGCTTACCGATTCAGCTCAATAGAGCTTACTGT
1 GAGCTTACCGATTCAGCTCGATAGAGCTTACTGT
35507693 CCATCAACTT
Statistics
Matches: 108, Mismatches: 17, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
46 107 0.99
47 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.20, T:0.34
Consensus pattern (46 bp):
GAGCTTACCGATTCAGCTCGATAGAGCTTACTGTTTCAGCTCATTG
Found at i:35512500 original size:13 final size:13
Alignment explanation
Indices: 35512482--35512506 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
35512472 TTGGCAGGGG
35512482 CACGCCCGTGTGA
1 CACGCCCGTGTGA
35512495 CACGCCCGTGTG
1 CACGCCCGTGTG
35512507 CGATTACTCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.40, G:0.32, T:0.16
Consensus pattern (13 bp):
CACGCCCGTGTGA
Found at i:35515512 original size:9 final size:9
Alignment explanation
Indices: 35515500--35515655 Score: 83
Period size: 9 Copynumber: 17.6 Consensus size: 9
35515490 TATATCATAT
35515500 CATAACTTA
1 CATAACTTA
35515509 CATAACTTA
1 CATAACTTA
*
35515518 CATAA-ATA
1 CATAACTTA
* * *
35515526 TATATCATA
1 CATAACTTA
35515535 TCATAACTTA
1 -CATAACTTA
*
35515545 CATGACTTA
1 CATAACTTA
*
35515554 CATAA-ATA
1 CATAACTTA
** * *
35515562 TGTATCATA
1 CATAACTTA
35515571 TCATAACTTA
1 -CATAACTTA
35515581 CATAACTTA
1 CATAACTTA
35515590 CATAATACTTA
1 CAT-A-ACTTA
* *
35515601 AAT-ATTTA
1 CATAACTTA
35515609 TCAT-A-TT-
1 -CATAACTTA
*
35515616 -ATATCTTA
1 CATAACTTA
35515624 CATAACTTA
1 CATAACTTA
*
35515633 CAAAACTTA
1 CATAACTTA
*
35515642 CTTAACTTA
1 CATAACTTA
35515651 CATAA
1 CATAA
35515656 TACATAAATA
Statistics
Matches: 111, Mismatches: 25, Indels: 22
0.70 0.16 0.14
Matches are distributed among these distances:
5 2 0.02
7 2 0.02
8 15 0.14
9 73 0.66
10 12 0.11
11 7 0.06
ACGTcount: A:0.44, C:0.17, G:0.01, T:0.37
Consensus pattern (9 bp):
CATAACTTA
Found at i:35515525 original size:36 final size:36
Alignment explanation
Indices: 35515485--35515594 Score: 202
Period size: 36 Copynumber: 3.1 Consensus size: 36
35515475 AAAATAATAA
35515485 AAATATATATCATATCATAACTTACATAACTTACAT
1 AAATATATATCATATCATAACTTACATAACTTACAT
*
35515521 AAATATATATCATATCATAACTTACATGACTTACAT
1 AAATATATATCATATCATAACTTACATAACTTACAT
*
35515557 AAATATGTATCATATCATAACTTACATAACTTACAT
1 AAATATATATCATATCATAACTTACATAACTTACAT
35515593 AA
1 AA
35515595 TACTTAAATA
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
36 71 1.00
ACGTcount: A:0.46, C:0.16, G:0.02, T:0.35
Consensus pattern (36 bp):
AAATATATATCATATCATAACTTACATAACTTACAT
Found at i:35515611 original size:43 final size:43
Alignment explanation
Indices: 35515536--35515641 Score: 135
Period size: 43 Copynumber: 2.5 Consensus size: 43
35515526 TATATCATAT
* *
35515536 CATAACTTACATGACTTACATAAATATGTATCATATCATAACTTA
1 CATAACTTACAT-A-ATACTTAAATATGTATCATATCATAACTTA
* * *
35515581 CATAACTTACATAATACTTAAATATTTATCATATTATATCTTA
1 CATAACTTACATAATACTTAAATATGTATCATATCATAACTTA
35515624 CATAACTTACA-AA-ACTTA
1 CATAACTTACATAATACTTA
35515642 CTTAACTTAC
Statistics
Matches: 56, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
41 5 0.09
42 2 0.04
43 36 0.64
44 1 0.02
45 12 0.21
ACGTcount: A:0.43, C:0.17, G:0.02, T:0.38
Consensus pattern (43 bp):
CATAACTTACATAATACTTAAATATGTATCATATCATAACTTA
Found at i:35517490 original size:12 final size:12
Alignment explanation
Indices: 35517473--35517498 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
35517463 AAGATCGAGG
35517473 GATGAATCTGAT
1 GATGAATCTGAT
35517485 GATGAATCTGAT
1 GATGAATCTGAT
35517497 GA
1 GA
35517499 AGAGGATGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.08, G:0.27, T:0.31
Consensus pattern (12 bp):
GATGAATCTGAT
Found at i:35520958 original size:27 final size:28
Alignment explanation
Indices: 35520928--35520981 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 28
35520918 TTCAACTAAA
*
35520928 AGAACA-TAAAAGTTGAGCATTTTATTT
1 AGAACATTAAAAGTTGAGCATTCTATTT
**
35520955 AGAACATTCGAAGTTGAGCATTCTATT
1 AGAACATTAAAAGTTGAGCATTCTATT
35520982 CCGAAAACAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
27 6 0.26
28 17 0.74
ACGTcount: A:0.37, C:0.11, G:0.17, T:0.35
Consensus pattern (28 bp):
AGAACATTAAAAGTTGAGCATTCTATTT
Found at i:35527481 original size:31 final size:31
Alignment explanation
Indices: 35527446--35527505 Score: 86
Period size: 31 Copynumber: 1.9 Consensus size: 31
35527436 TATACATGAA
35527446 ATATATGGAAAT-GATGATACATGATATATTG
1 ATATATGGAAATGGATGATACAT-ATATATTG
* *
35527477 ATATATTGAAATGGATGATATATATATAT
1 ATATATGGAAATGGATGATACATATATAT
35527506 GAAGAAACGA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
31 17 0.65
32 9 0.35
ACGTcount: A:0.43, C:0.02, G:0.17, T:0.38
Consensus pattern (31 bp):
ATATATGGAAATGGATGATACATATATATTG
Found at i:35533014 original size:25 final size:25
Alignment explanation
Indices: 35532957--35533011 Score: 65
Period size: 29 Copynumber: 2.0 Consensus size: 25
35532947 TCGAAATACT
*
35532957 AATATCATGGCCCGAAGCCAAATCA
1 AATATCATGGCACGAAGCCAAATCA
35532982 ACTGATATGCATGGCACGAAGCCAAATCA
1 A---ATAT-CATGGCACGAAGCCAAATCA
35533011 A
1 A
35533012 TATAACTCAC
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
25 1 0.04
28 4 0.16
29 20 0.80
ACGTcount: A:0.40, C:0.25, G:0.18, T:0.16
Consensus pattern (25 bp):
AATATCATGGCACGAAGCCAAATCA
Found at i:35550906 original size:22 final size:22
Alignment explanation
Indices: 35550868--35550912 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
35550858 AAATATTATT
*
35550868 AATTAATTAGTTTAATTAGATA
1 AATTAATTAGTTTAATTAAATA
*
35550890 AATTAATT-TTTTAAATTAAATA
1 AATTAATTAGTTT-AATTAAATA
35550912 A
1 A
35550913 TTCTCTCAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 3 0.15
22 17 0.85
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (22 bp):
AATTAATTAGTTTAATTAAATA
Found at i:35553157 original size:7 final size:7
Alignment explanation
Indices: 35553141--35553188 Score: 80
Period size: 7 Copynumber: 7.0 Consensus size: 7
35553131 AAATAAGTAA
35553141 TTCGAGT
1 TTCGAGT
*
35553148 TTCAAGT
1 TTCGAGT
35553155 TTCGAGT
1 TTCGAGT
35553162 TTCGAGT
1 TTCGAGT
35553169 TTCGAGT
1 TTCGAGT
35553176 TTCGAG-
1 TTCGAGT
35553182 TTCGAGT
1 TTCGAGT
35553189 CGAGTTGAAT
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
6 6 0.16
7 32 0.84
ACGTcount: A:0.17, C:0.15, G:0.27, T:0.42
Consensus pattern (7 bp):
TTCGAGT
Found at i:35553352 original size:19 final size:19
Alignment explanation
Indices: 35553302--35553351 Score: 66
Period size: 18 Copynumber: 2.6 Consensus size: 19
35553292 AAAATTTAAA
*
35553302 AAAAATTCAAAATAATTTTT
1 AAAAATTCAAAAT-ATTTAT
35553322 AAAAA-TCAAAATATTTAT
1 AAAAATTCAAAATATTTAT
35553340 AAAAATTTCAAA
1 AAAAA-TTCAAA
35553352 TTTTATATTT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
18 10 0.37
19 7 0.26
20 10 0.37
ACGTcount: A:0.60, C:0.06, G:0.00, T:0.34
Consensus pattern (19 bp):
AAAAATTCAAAATATTTAT
Found at i:35553422 original size:29 final size:29
Alignment explanation
Indices: 35553360--35553437 Score: 79
Period size: 28 Copynumber: 2.7 Consensus size: 29
35553350 AATTTTATAT
*
35553360 TTTAAAATTTTATAA-AAT-TATAAAAAAA
1 TTTAAAATTTGA-AAGAATATATAAAAAAA
** *
35553388 GGTAAAATTTGAAAGAATATATAAAAAAC
1 TTTAAAATTTGAAAGAATATATAAAAAAA
35553417 TTTAAAAATTCTGAAAGAATA
1 TTT-AAAATT-TGAAAGAATA
35553438 ATTGAGCCTA
Statistics
Matches: 40, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
27 2 0.05
28 12 0.30
29 10 0.25
30 6 0.15
31 10 0.25
ACGTcount: A:0.58, C:0.03, G:0.08, T:0.32
Consensus pattern (29 bp):
TTTAAAATTTGAAAGAATATATAAAAAAA
Found at i:35554032 original size:185 final size:185
Alignment explanation
Indices: 35553690--35554098 Score: 588
Period size: 185 Copynumber: 2.2 Consensus size: 185
35553680 ATTCTTATAG
* * * * * *
35553690 TCTCTCTTGCCAAACACCATTTTTCTTCTTCAACACACATGGTTGTCTCATTTTATCTACAATAA
1 TCTCTCTTGCCAAACACCATTTTTCTTCTTCAAAACACATAGTTGGCCCATTTCATCTACAAAAA
* * * *
35553755 TTTCCATTACCGTGATTATAATCATGCTTTTGTGTAATTCTTGTAAACCCACACCACACTTTTAG
66 TTTCCATTACCATGACTATAATCATGCTTTCGTGTAATTCTTGTAAACCCACACCACACTTTCAG
* * *
35553820 CTTAAAATCATTGTTTTTTCACCCCACTATC-AGCTGCAATTTTTTTCTCTCATTT
131 CTTAAAATCATTGGTTTTTCACCCCACTATCGA-CTGCAATTTTATTCACTCATTT
* * * * *
35553875 TCTCTATTGCCGAACACTATTTTTCTTTTTCAAAACATATAGTTGGCCCATTTCATCTACAAAAA
1 TCTCTCTTGCCAAACACCATTTTTCTTCTTCAAAACACATAGTTGGCCCATTTCATCTACAAAAA
35553940 TTTCCATTACCATGACTATAATCATGCTTTCGTGTAATT-TATGTAAACCCACACCACACTTTCA
66 TTTCCATTACCATGACTATAATCATGCTTTCGTGTAATTCT-TGTAAACCCACACCACACTTTCA
* * * *
35554004 TCTTAAAATCATTGGTTTTTCCCCCCACTATCGATTGCCATTTTATTCACTCATTT
130 GCTTAAAATCATTGGTTTTTCACCCCACTATCGACTGCAATTTTATTCACTCATTT
35554060 TCTCTCTTGCCAAACACCATTTTTCTTCTTCAAAACACA
1 TCTCTCTTGCCAAACACCATTTTTCTTCTTCAAAACACA
35554099 ATATCTGGTT
Statistics
Matches: 195, Mismatches: 27, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
184 1 0.01
185 193 0.99
186 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.07, T:0.40
Consensus pattern (185 bp):
TCTCTCTTGCCAAACACCATTTTTCTTCTTCAAAACACATAGTTGGCCCATTTCATCTACAAAAA
TTTCCATTACCATGACTATAATCATGCTTTCGTGTAATTCTTGTAAACCCACACCACACTTTCAG
CTTAAAATCATTGGTTTTTCACCCCACTATCGACTGCAATTTTATTCACTCATTT
Found at i:35564570 original size:22 final size:22
Alignment explanation
Indices: 35564545--35564588 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
35564535 ACTATTTTCT
*
35564545 TTAAAAAAATAATTTTACTCCC
1 TTAAAAAAATAATTTTAATCCC
**
35564567 TTAAAAATTTAATTTTAATCCC
1 TTAAAAAAATAATTTTAATCCC
35564589 ACATTTACTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.43, C:0.16, G:0.00, T:0.41
Consensus pattern (22 bp):
TTAAAAAAATAATTTTAATCCC
Found at i:35565107 original size:21 final size:21
Alignment explanation
Indices: 35565082--35565142 Score: 95
Period size: 21 Copynumber: 2.9 Consensus size: 21
35565072 ACTATTTTTA
35565082 TTAAAAATTAATTTTAATTCT
1 TTAAAAATTAATTTTAATTCT
* *
35565103 TTAAAAAATAATTTTTATTCT
1 TTAAAAATTAATTTTAATTCT
35565124 TTAAAAAGTTAATTTTAAT
1 TTAAAAA-TTAATTTTAAT
35565143 CTCACATTAA
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
21 26 0.74
22 9 0.26
ACGTcount: A:0.44, C:0.03, G:0.02, T:0.51
Consensus pattern (21 bp):
TTAAAAATTAATTTTAATTCT
Found at i:35566352 original size:41 final size:41
Alignment explanation
Indices: 35566301--35566519 Score: 204
Period size: 41 Copynumber: 5.3 Consensus size: 41
35566291 ATAATAATGA
* * *
35566301 TGAATTGCACATACGTGCCCCTGTTTATACTTCGGCACCCC
1 TGAAATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
* *
35566342 TAAAATGCACATACGTGCCCTTGTTTGTACTTCGGTACCCC
1 TGAAATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
* * ** ** * *
35566383 TGAACTGTACATACGCACATCTGTTTGTACTTTGGTACCTC
1 TGAAATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
* * * * *
35566424 TAAAATACACAAACGTGCCCCTATTTGTACTTCGGTATCCC
1 TGAAATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
* * * * * *
35566465 TGGATTGCGCATATGTGCCCCTATTTGTACTTTGGTACCCC
1 TGAAATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
**
35566506 TGAGTTGCACATAC
1 TGAAATGCACATAC
35566520 ATGCTCATGT
Statistics
Matches: 137, Mismatches: 41, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
41 137 1.00
ACGTcount: A:0.22, C:0.28, G:0.17, T:0.32
Consensus pattern (41 bp):
TGAAATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
Found at i:35566492 original size:82 final size:82
Alignment explanation
Indices: 35566301--35566506 Score: 241
Period size: 82 Copynumber: 2.5 Consensus size: 82
35566291 ATAATAATGA
* * * * * * *
35566301 TGAATTGCACATACGTGCCCCTGTTTATACTTCGGCACCCCTAAAATGCACATACGTGCCCTTGT
1 TGAATTGCACATACGTGCCCCTGTTTGTACTTTGGTACCCCTAAAATACACAAACGTGCCCCTAT
35566366 TTGTACTTCGGTACCCC
66 TTGTACTTCGGTACCCC
* * ** ** *
35566383 TGAACTGTACATACGCACATCTGTTTGTACTTTGGTACCTCTAAAATACACAAACGTGCCCCTAT
1 TGAATTGCACATACGTGCCCCTGTTTGTACTTTGGTACCCCTAAAATACACAAACGTGCCCCTAT
*
35566448 TTGTACTTCGGTATCCC
66 TTGTACTTCGGTACCCC
* * * *
35566465 TGGATTGCGCATATGTGCCCCTATTTGTACTTTGGTACCCCT
1 TGAATTGCACATACGTGCCCCTGTTTGTACTTTGGTACCCCT
35566507 GAGTTGCACA
Statistics
Matches: 98, Mismatches: 26, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
82 98 1.00
ACGTcount: A:0.21, C:0.29, G:0.17, T:0.33
Consensus pattern (82 bp):
TGAATTGCACATACGTGCCCCTGTTTGTACTTTGGTACCCCTAAAATACACAAACGTGCCCCTAT
TTGTACTTCGGTACCCC
Found at i:35568561 original size:23 final size:23
Alignment explanation
Indices: 35568511--35568567 Score: 69
Period size: 23 Copynumber: 2.5 Consensus size: 23
35568501 GGATAGTAAT
*
35568511 ATATCGAGAAGTTCAAGCGAGCC
1 ATATCAAGAAGTTCAAGCGAGCC
* * *
35568534 ATATCAAGAAGTTTAAGTGAGTC
1 ATATCAAGAAGTTCAAGCGAGCC
*
35568557 GTATCAAGAAG
1 ATATCAAGAAG
35568568 CTCCGAAGAG
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.39, C:0.14, G:0.25, T:0.23
Consensus pattern (23 bp):
ATATCAAGAAGTTCAAGCGAGCC
Found at i:35568610 original size:26 final size:26
Alignment explanation
Indices: 35568563--35568630 Score: 68
Period size: 26 Copynumber: 2.7 Consensus size: 26
35568553 AGTCGTATCA
* **
35568563 AGAAGCTC-CGAAGAGCCATTAATC-
1 AGAAGCTCACAAAGAGCTTTTAATCG
35568587 AGAATGCTCACAAAGAGCTTTTAATCG
1 AGAA-GCTCACAAAGAGCTTTTAATCG
* *
35568614 GGAAGCTCACGAAGAGC
1 AGAAGCTCACAAAGAGC
35568631 CATAAGACGA
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
24 4 0.11
25 4 0.11
26 25 0.69
27 3 0.08
ACGTcount: A:0.37, C:0.22, G:0.24, T:0.18
Consensus pattern (26 bp):
AGAAGCTCACAAAGAGCTTTTAATCG
Found at i:35576173 original size:25 final size:25
Alignment explanation
Indices: 35576142--35576202 Score: 70
Period size: 25 Copynumber: 2.4 Consensus size: 25
35576132 TGAGCACATA
*
35576142 AACGGGAAGCTTATGT-GAGCTATAT
1 AACGGGAAGCTTATCTAG-GCTATAT
* * *
35576167 AATGGGAGGCTTATCTAGGCTGTAT
1 AACGGGAAGCTTATCTAGGCTATAT
35576192 AACGGGAAGCT
1 AACGGGAAGCT
35576203 CATAAGAGTC
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
25 28 0.97
26 1 0.03
ACGTcount: A:0.30, C:0.13, G:0.31, T:0.26
Consensus pattern (25 bp):
AACGGGAAGCTTATCTAGGCTATAT
Found at i:35576358 original size:26 final size:26
Alignment explanation
Indices: 35576328--35576387 Score: 77
Period size: 26 Copynumber: 2.3 Consensus size: 26
35576318 GAAACTCTGG
35576328 AGAGCCATTAATC-AGAAAGCTCACAA
1 AGAGCCATTAATCGA-AAAGCTCACAA
** *
35576354 AGAGCTTTTAATCGAAAAGCTCACGA
1 AGAGCCATTAATCGAAAAGCTCACAA
35576380 AGAGCCAT
1 AGAGCCAT
35576388 ATATCGGGAT
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
26 27 0.96
27 1 0.04
ACGTcount: A:0.42, C:0.22, G:0.18, T:0.18
Consensus pattern (26 bp):
AGAGCCATTAATCGAAAAGCTCACAA
Found at i:35577642 original size:5 final size:5
Alignment explanation
Indices: 35577632--35577681 Score: 86
Period size: 5 Copynumber: 10.4 Consensus size: 5
35577622 AAGAAAAAAT
35577632 TATTA TATTA TATTA TATTA TA-T- TATTA TATTA TATTA TATTA TATTA
1 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
35577680 TA
1 TA
35577682 ATTAAAGAAT
Statistics
Matches: 43, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
3 2 0.05
4 2 0.05
5 39 0.91
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
TATTA
Found at i:35577651 original size:18 final size:18
Alignment explanation
Indices: 35577637--35577675 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
35577627 AAAATTATTA
35577637 TATTATATTATATTATAT
1 TATTATATTATATTATAT
35577655 TATTATATTATATTATAT
1 TATTATATTATATTATAT
35577673 TAT
1 TAT
35577676 ATTATAATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (18 bp):
TATTATATTATATTATAT
Found at i:35577656 original size:23 final size:23
Alignment explanation
Indices: 35577630--35577680 Score: 102
Period size: 23 Copynumber: 2.2 Consensus size: 23
35577620 TTAAGAAAAA
35577630 ATTATTATATTATATTATATTAT
1 ATTATTATATTATATTATATTAT
35577653 ATTATTATATTATATTATATTAT
1 ATTATTATATTATATTATATTAT
35577676 ATTAT
1 ATTAT
35577681 AATTAAAGAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (23 bp):
ATTATTATATTATATTATATTAT
Found at i:35581660 original size:69 final size:69
Alignment explanation
Indices: 35581532--35581696 Score: 194
Period size: 69 Copynumber: 2.4 Consensus size: 69
35581522 TTTTTCACTA
* *
35581532 TTTTCATTAAAAAGTTAATTTTAATTCCACATTGACTAAACAATGCTCTTATAACTCACTTCTTC
1 TTTT-ATTAAAAAGTTAATTTTAATCCCACATTGACTAAACAATACTCTTATAACTCACTTCTTC
*
35581597 GCA-AC
65 -AATAC
**
35581602 TTTTATTAAAAAGTTAATTTTAATCCCACATTGACTAGAA-AATACT-TTCATAGTTCACTTCTT
1 TTTTATTAAAAAGTTAATTTTAATCCCACATTGACTA-AACAATACTCTT-ATAACTCACTTCTT
*
35581665 CAATAT
64 CAATAC
* *
35581671 TTTTACTAAAAA-TTAATTTTAGTCCC
1 TTTTATTAAAAAGTTAATTTTAATCCC
35581697 TTAAAAAGTT
Statistics
Matches: 84, Mismatches: 8, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
68 16 0.19
69 62 0.74
70 6 0.07
ACGTcount: A:0.35, C:0.18, G:0.05, T:0.41
Consensus pattern (69 bp):
TTTTATTAAAAAGTTAATTTTAATCCCACATTGACTAAACAATACTCTTATAACTCACTTCTTCA
ATAC
Found at i:35581703 original size:21 final size:22
Alignment explanation
Indices: 35581677--35581721 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
35581667 ATATTTTTAC
35581677 TAAAAA-TTAA-TTTTAGTCCCT
1 TAAAAAGTTAATTTTTA-TCCCT
35581698 TAAAAAGTTAATTTTTATCCCT
1 TAAAAAGTTAATTTTTATCCCT
35581720 TA
1 TA
35581722 TTGGCTAGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 6 0.27
22 11 0.50
23 5 0.23
ACGTcount: A:0.38, C:0.13, G:0.04, T:0.44
Consensus pattern (22 bp):
TAAAAAGTTAATTTTTATCCCT
Found at i:35581843 original size:51 final size:51
Alignment explanation
Indices: 35581767--35581870 Score: 181
Period size: 51 Copynumber: 2.0 Consensus size: 51
35581757 TATAAATAAG
* *
35581767 TGTAAATTGCTTCGCTATTTTCATTAAAAAAAGTTAATTTTAACGCTATAT
1 TGTAAATTGCTTAGCTATTTTCATTAAAAAAAGTTAATTTTAACGCCATAT
*
35581818 TGTAAATTGCTTATCTATTTTCATTAAAAAAAGTTAATTTTAACGCCATAT
1 TGTAAATTGCTTAGCTATTTTCATTAAAAAAAGTTAATTTTAACGCCATAT
35581869 TG
1 TG
35581871 ACTAGAGAAT
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
51 50 1.00
ACGTcount: A:0.36, C:0.12, G:0.10, T:0.43
Consensus pattern (51 bp):
TGTAAATTGCTTAGCTATTTTCATTAAAAAAAGTTAATTTTAACGCCATAT
Found at i:35583757 original size:14 final size:16
Alignment explanation
Indices: 35583738--35583789 Score: 54
Period size: 19 Copynumber: 3.2 Consensus size: 16
35583728 CTATATCATT
35583738 ATATATAA-TATA-TA
1 ATATATAATTATATTA
35583752 ATATATAATTATATTA
1 ATATATAATTATATTA
*
35583768 ATAGTTTATATTTATATTA
1 ATA---TATAATTATATTA
35583787 ATA
1 ATA
35583790 ATTAAATATT
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
14 8 0.25
15 4 0.12
16 5 0.16
19 15 0.47
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (16 bp):
ATATATAATTATATTA
Found at i:35583801 original size:19 final size:18
Alignment explanation
Indices: 35583759--35583822 Score: 58
Period size: 19 Copynumber: 3.4 Consensus size: 18
35583749 ATAATATATA
* *
35583759 ATTATATTAATAGTTTAT
1 ATTATATTAATAATTAAT
35583777 ATTTATATTAATAATTAAAT
1 A-TTATATTAATAATT-AAT
* *
35583797 ATTATAAT-ATCATGTAAT
1 ATTATATTAATAAT-TAAT
35583815 ATTATATT
1 ATTATATT
35583823 TTTATTATAA
Statistics
Matches: 38, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
18 15 0.39
19 20 0.53
20 3 0.08
ACGTcount: A:0.44, C:0.02, G:0.03, T:0.52
Consensus pattern (18 bp):
ATTATATTAATAATTAAT
Found at i:35585313 original size:4 final size:4
Alignment explanation
Indices: 35585304--35585331 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
35585294 AGATGAAGGC
35585304 TTAT TTAT TTAT TTAT TTAT TTAT TTAT
1 TTAT TTAT TTAT TTAT TTAT TTAT TTAT
35585332 AATCAATTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (4 bp):
TTAT
Found at i:35588488 original size:16 final size:18
Alignment explanation
Indices: 35588467--35588499 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
35588457 CATACTAGCT
35588467 CCAAAAT-ATAG-TAGTA
1 CCAAAATGATAGATAGTA
35588483 CCAAAATGATAGATAGT
1 CCAAAATGATAGATAGT
35588500 GTGGCGAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 4 0.27
18 4 0.27
ACGTcount: A:0.48, C:0.12, G:0.15, T:0.24
Consensus pattern (18 bp):
CCAAAATGATAGATAGTA
Found at i:35589038 original size:41 final size:42
Alignment explanation
Indices: 35588976--35589129 Score: 152
Period size: 41 Copynumber: 3.6 Consensus size: 42
35588966 TTTTATCAAA
* * * *
35588976 TCACTGGCATTTAGCCTGCTAGGTTTTAAACCCGAGT-TCA-T
1 TCACCGGCATTTAGCCTGCTAGGCTTGAAACCC-AATATCATT
* *
35589017 TCACCGGCATTTCGCCTGCTAGGCTTGAAGCCCAATATCATT
1 TCACCGGCATTTAGCCTGCTAGGCTTGAAACCCAATATCATT
* *
35589059 TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATAGT-ATT
1 TCACCGGCATT-TAGCCTGCTAGGCTTGAA-ACCC-AATA-TCATT
*
35589104 TCACCGGCATCATAGCCTGCTAGGCT
1 TCACCGGCAT-TTAGCCTGCTAGGCT
35589130 CAAAGGCCCG
Statistics
Matches: 97, Mismatches: 9, Indels: 10
0.84 0.08 0.09
Matches are distributed among these distances:
40 2 0.02
41 31 0.32
42 12 0.12
43 16 0.16
44 4 0.04
45 31 0.32
46 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.28
Consensus pattern (42 bp):
TCACCGGCATTTAGCCTGCTAGGCTTGAAACCCAATATCATT
Found at i:35589112 original size:45 final size:45
Alignment explanation
Indices: 35589016--35589144 Score: 185
Period size: 45 Copynumber: 2.9 Consensus size: 45
35589006 CCCGAGTTCA
* *
35589016 TTCACCGGCATT-TCGCCTGCTAGGCTTGAA-GCCC-AATATCAT
1 TTCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATATCAT
35589058 TTCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATAGT-AT
1 TTCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATA-TCAT
* *
35589103 TTCACCGGCATCATAGCCTGCTAGGCTCAAAGGCCCGAATAT
1 TTCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATAT
35589145 TACTGTACGA
Statistics
Matches: 79, Mismatches: 4, Indels: 6
0.89 0.04 0.07
Matches are distributed among these distances:
42 12 0.15
43 16 0.20
44 5 0.06
45 45 0.57
46 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.22, T:0.25
Consensus pattern (45 bp):
TTCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATATCAT
Found at i:35591278 original size:46 final size:46
Alignment explanation
Indices: 35591222--35591325 Score: 163
Period size: 46 Copynumber: 2.3 Consensus size: 46
35591212 AACGTTCCAG
* *
35591222 ACGTGGTCTTACATGTAATCACATATTGATGCCACTGTCGTACAAA
1 ACGTGGTCTTACATGTAATCACATATCGATGCCACTATCGTACAAA
* * *
35591268 ACGTGGTCTTACATGTCATCACATATCGATGCTACTATCGTATAAA
1 ACGTGGTCTTACATGTAATCACATATCGATGCCACTATCGTACAAA
35591314 ACGTGGTCTTAC
1 ACGTGGTCTTAC
35591326 TCGCACACAT
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 53 1.00
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.32
Consensus pattern (46 bp):
ACGTGGTCTTACATGTAATCACATATCGATGCCACTATCGTACAAA
Found at i:35591340 original size:46 final size:48
Alignment explanation
Indices: 35591222--35591343 Score: 150
Period size: 46 Copynumber: 2.7 Consensus size: 48
35591212 AACGTTCCAG
* *
35591222 ACGTGGTCTTACATGTAATCACATAT-T-GATGCCACTGTCGTACAAA
1 ACGTGGTCTTACATGTCATCACATATATCGATGCCACTATCGTACAAA
* *
35591268 ACGTGGTCTTACATGTCATCAC--ATATCGATGCTACTATCGTATAAA
1 ACGTGGTCTTACATGTCATCACATATATCGATGCCACTATCGTACAAA
35591314 ACGTGGTCTTAC-TCG-CA-CACATATATCGAT
1 ACGTGGTCTTACAT-GTCATCACATATATCGAT
35591344 TCCAATGTCT
Statistics
Matches: 67, Mismatches: 4, Indels: 10
0.83 0.05 0.12
Matches are distributed among these distances:
44 5 0.07
45 4 0.06
46 58 0.87
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.31
Consensus pattern (48 bp):
ACGTGGTCTTACATGTCATCACATATATCGATGCCACTATCGTACAAA
Found at i:35591709 original size:12 final size:12
Alignment explanation
Indices: 35591692--35591716 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
35591682 AAAATAAACT
35591692 TATTTAATCAAA
1 TATTTAATCAAA
35591704 TATTTAATCAAA
1 TATTTAATCAAA
35591716 T
1 T
35591717 TCATCCAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (12 bp):
TATTTAATCAAA
Found at i:35595206 original size:27 final size:27
Alignment explanation
Indices: 35595165--35595218 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
35595155 TGTCATGTGA
* *
35595165 AATTGAATGACAAATTATTGTTACATG
1 AATTGAATGACAAATTACTATTACATG
**
35595192 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGACAAATTACTATTACATG
35595219 GGTTGTACCT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.41, C:0.07, G:0.13, T:0.39
Consensus pattern (27 bp):
AATTGAATGACAAATTACTATTACATG
Found at i:35601144 original size:27 final size:27
Alignment explanation
Indices: 35601113--35601237 Score: 114
Period size: 27 Copynumber: 4.6 Consensus size: 27
35601103 TTAGTTTACC
* *
35601113 AAATTACTAAAATACCCTCGATCAGTA
1 AAATTACTAAAATACCCTCGGTTAGTA
* * *
35601140 AAATTA-TCAAAATACCTTTGGTTTGTA
1 AAATTACT-AAAATACCCTCGGTTAGTA
*
35601167 AAATTACTAAAATACCC-CTGGTTTGTA
1 AAATTACTAAAATACCCTC-GGTTAGTA
*
35601194 AAATTACCAAAATACCC-CTGGCTTA-TA
1 AAATTACTAAAATACCCTC-GG-TTAGTA
*
35601221 AAATTACCAAAATACCC
1 AAATTACTAAAATACCC
35601238 CTGATTTGTG
Statistics
Matches: 85, Mismatches: 9, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
26 1 0.01
27 81 0.95
28 3 0.04
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.30
Consensus pattern (27 bp):
AAATTACTAAAATACCCTCGGTTAGTA
Found at i:35601238 original size:27 final size:27
Alignment explanation
Indices: 35601137--35601262 Score: 162
Period size: 27 Copynumber: 4.7 Consensus size: 27
35601127 CCCTCGATCA
* **
35601137 GTAAAATTATCAAAATACCTTTGGTTT
1 GTAAAATTACCAAAATACCCCTGGTTT
*
35601164 GTAAAATTACTAAAATACCCCTGGTTT
1 GTAAAATTACCAAAATACCCCTGGTTT
*
35601191 GTAAAATTACCAAAATACCCCTGGCTT
1 GTAAAATTACCAAAATACCCCTGGTTT
* *
35601218 ATAAAATTACCAAAATACCCCTGATTT
1 GTAAAATTACCAAAATACCCCTGGTTT
* * *
35601245 GTGAAATTAACGAAATAC
1 GTAAAATTACCAAAATAC
35601263 TCTCGATTTG
Statistics
Matches: 86, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 86 1.00
ACGTcount: A:0.40, C:0.18, G:0.10, T:0.31
Consensus pattern (27 bp):
GTAAAATTACCAAAATACCCCTGGTTT
Found at i:35601246 original size:54 final size:54
Alignment explanation
Indices: 35601113--35601262 Score: 176
Period size: 54 Copynumber: 2.8 Consensus size: 54
35601103 TTAGTTTACC
** * ** * *
35601113 AAATTACTAAAATA-CCCTCGATCAGTAAAATTATCAAAATACCTTTGGTTTGTA
1 AAATTACTAAAATACCCCT-GATTTGTAAAATTAACAAAATACCCCTGGCTTATA
* *
35601167 AAATTACTAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTGGCTTATA
1 AAATTACTAAAATACCCCTGATTTGTAAAATTAACAAAATACCCCTGGCTTATA
* * *
35601221 AAATTACCAAAATACCCCTGATTTGTGAAATTAACGAAATAC
1 AAATTACTAAAATACCCCTGATTTGTAAAATTAACAAAATAC
35601263 TCTCGATTTG
Statistics
Matches: 82, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
54 78 0.95
55 4 0.05
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.30
Consensus pattern (54 bp):
AAATTACTAAAATACCCCTGATTTGTAAAATTAACAAAATACCCCTGGCTTATA
Found at i:35601504 original size:27 final size:27
Alignment explanation
Indices: 35601284--35601504 Score: 291
Period size: 27 Copynumber: 8.2 Consensus size: 27
35601274 AAAATATCGT
* * *
35601284 AATACCCCTGTGGGGTAAAATTATCGA
1 AATACCCCTGTAGGGTAGAATTACCGA
* *
35601311 AATACCCTTGTAGGGTAGAATTACTGA
1 AATACCCCTGTAGGGTAGAATTACCGA
**
35601338 AATACCCCTGTAGGGTAGAATTATTGA
1 AATACCCCTGTAGGGTAGAATTACCGA
35601365 AATACCCCTGTAGGGTAGAATTACCGA
1 AATACCCCTGTAGGGTAGAATTACCGA
* * *
35601392 AATACTCCTGTAGGATAGAATTACTGA
1 AATACCCCTGTAGGGTAGAATTACCGA
*
35601419 AATACCCCTATAGGGTAGAATT-CCTGA
1 AATACCCCTGTAGGGTAGAATTACC-GA
* **
35601446 AATACCCTTGTAGGGTAGAATTACTAA
1 AATACCCCTGTAGGGTAGAATTACCGA
35601473 AATACCCCTGTAGGGTAGAATTACCGA
1 AATACCCCTGTAGGGTAGAATTACCGA
*
35601500 GATAC
1 AATAC
35601505 TGTTGTGGGG
Statistics
Matches: 168, Mismatches: 24, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
26 1 0.01
27 166 0.99
28 1 0.01
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.27
Consensus pattern (27 bp):
AATACCCCTGTAGGGTAGAATTACCGA
Found at i:35601765 original size:25 final size:25
Alignment explanation
Indices: 35601727--35601821 Score: 145
Period size: 25 Copynumber: 3.8 Consensus size: 25
35601717 AGGAAGTGCT
* *
35601727 AAAAGGGCTATGCCTCAGTTTATCG
1 AAAAGGGCTTTGCCCCAGTTTATCG
* *
35601752 AAAAGGGCTTTGCCCTAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTATCG
*
35601777 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCG
35601802 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
35601822 ACTAAAAGAG
Statistics
Matches: 63, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 63 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCG
Found at i:35602819 original size:27 final size:27
Alignment explanation
Indices: 35602778--35602831 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
35602768 TGTCATGTGA
* *
35602778 AATTGAATGGCAAATTATTGTTACATG
1 AATTGAATGGCAAATTACTATTACATG
**
35602805 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGGCAAATTACTATTACATG
35602832 GGTTGTACCT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.07, G:0.15, T:0.39
Consensus pattern (27 bp):
AATTGAATGGCAAATTACTATTACATG
Found at i:35603160 original size:22 final size:22
Alignment explanation
Indices: 35603116--35603160 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
35603106 TGGTCGCATG
* * *
35603116 TGTAATACTAAGTGCAGGCTAC
1 TGTAATACCAAGTGCAAGATAC
*
35603138 TGTAGTACCAAGTGCAAGATAC
1 TGTAATACCAAGTGCAAGATAC
35603160 T
1 T
35603161 ATGCGTACCC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27
Consensus pattern (22 bp):
TGTAATACCAAGTGCAAGATAC
Found at i:35606953 original size:14 final size:14
Alignment explanation
Indices: 35606936--35606966 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
35606926 ATAAGTAAAT
35606936 TAAATATTATATTA
1 TAAATATTATATTA
*
35606950 TAAATGTTATATTA
1 TAAATATTATATTA
35606964 TAA
1 TAA
35606967 TATAAAACAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (14 bp):
TAAATATTATATTA
Found at i:35608508 original size:40 final size:39
Alignment explanation
Indices: 35608431--35608605 Score: 262
Period size: 40 Copynumber: 4.4 Consensus size: 39
35608421 AAACCAAGTA
* *
35608431 CCTTCGGGATTTAGCCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCGGATATAG-TAACTCGCACAAATG
*
35608470 CCTTCGGGACTTAGCCGGATTATAGTAACTCGCGCAAATG
1 CCTTCGGGACTTAGCCGGA-TATAGTAACTCGCACAAATG
35608510 CCTTCGGGACTTAGCCTGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCC-GGATATAGTAACTCGCACAAATG
* *
35608550 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATT
1 CCTTCGGGACTTAG-CCGGATATAGTAACTCGCACAAATG
35608590 CCTTCGGGACTTAGCC
1 CCTTCGGGACTTAGCC
35608606 TGGTTATCAT
Statistics
Matches: 127, Mismatches: 5, Indels: 8
0.91 0.04 0.06
Matches are distributed among these distances:
39 21 0.17
40 101 0.80
41 5 0.04
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (39 bp):
CCTTCGGGACTTAGCCGGATATAGTAACTCGCACAAATG
Found at i:35616513 original size:40 final size:40
Alignment explanation
Indices: 35616436--35616573 Score: 208
Period size: 40 Copynumber: 3.5 Consensus size: 40
35616426 AAACCAAGTA
* *
35616436 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
35616475 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
35616515 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
35616555 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
35616574 TTATCATCCG
Statistics
Matches: 91, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
39 14 0.15
40 77 0.85
ACGTcount: A:0.22, C:0.29, G:0.25, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:35627338 original size:39 final size:39
Alignment explanation
Indices: 35627294--35627529 Score: 420
Period size: 39 Copynumber: 6.1 Consensus size: 39
35627284 ATTATATTAT
* *
35627294 CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
35627333 CAGCACGAAGCCTGCGGGACTTT-GGCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
35627371 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
35627410 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
35627449 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
35627488 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
35627527 CAG
1 CAG
35627530 TGTCTTGCAT
Statistics
Matches: 188, Mismatches: 8, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
38 36 0.19
39 152 0.81
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.21
Consensus pattern (39 bp):
CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
Found at i:35636569 original size:14 final size:15
Alignment explanation
Indices: 35636541--35636569 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
35636531 CTCTTTTAAG
35636541 GACAAGAATAATCCA
1 GACAAGAATAATCCA
35636556 GACAAGAA-AATCCA
1 GACAAGAATAATCCA
35636570 TACGAACTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.55, C:0.21, G:0.14, T:0.10
Consensus pattern (15 bp):
GACAAGAATAATCCA
Found at i:35645441 original size:58 final size:56
Alignment explanation
Indices: 35645379--35645489 Score: 141
Period size: 56 Copynumber: 1.9 Consensus size: 56
35645369 TCTCAGATAG
* * *
35645379 GGTCTTAATCGTACACATATATATTAGAGTCATATATCGATGCCAATGTATAAAACGT
1 GGTCTCAATCGTACAC--ATATATTAGAGTCACATATCGATGCCAACGTATAAAACGT
* * * *
35645437 GGTCTCACTTGTATACATATATTGGAGTCACATATCGATGCCAACGTATAAAA
1 GGTCTCAATCGTACACATATATTAGAGTCACATATCGATGCCAACGTATAAAA
35645490 TGTCGTTTTA
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
56 34 0.74
58 12 0.26
ACGTcount: A:0.35, C:0.17, G:0.16, T:0.32
Consensus pattern (56 bp):
GGTCTCAATCGTACACATATATTAGAGTCACATATCGATGCCAACGTATAAAACGT
Found at i:35645511 original size:56 final size:56
Alignment explanation
Indices: 35645391--35645514 Score: 140
Period size: 56 Copynumber: 2.2 Consensus size: 56
35645381 TCTTAATCGT
* * * * *
35645391 ACACATATATATTAGAGTCATATATCGATGCCAATGTATAAAACGTGGTCTCACTT
1 ACACACATATATTAGAGTCACATATCGATGCCAACGTATAAAACGTCGTCTCACTC
** * * * * *
35645447 GTATACATATATTGGAGTCACATATCGATGCCAACGTATAAAATGTCGTTTTACTC
1 ACACACATATATTAGAGTCACATATCGATGCCAACGTATAAAACGTCGTCTCACTC
35645503 ACACACATATAT
1 ACACACATATAT
35645515 CGATTCCATG
Statistics
Matches: 53, Mismatches: 15, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
56 53 1.00
ACGTcount: A:0.35, C:0.19, G:0.14, T:0.32
Consensus pattern (56 bp):
ACACACATATATTAGAGTCACATATCGATGCCAACGTATAAAACGTCGTCTCACTC
Found at i:35648606 original size:13 final size:13
Alignment explanation
Indices: 35648588--35648613 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
35648578 GCTTGGCAGG
35648588 GACACGCCCGTGT
1 GACACGCCCGTGT
35648601 GACACGCCCGTGT
1 GACACGCCCGTGT
35648614 TTGATTACTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.38, G:0.31, T:0.15
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:35654042 original size:14 final size:14
Alignment explanation
Indices: 35654023--35654049 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
35654013 TATCAAAAAA
35654023 ATAATTAAGAACAC
1 ATAATTAAGAACAC
35654037 ATAATTAAGAACA
1 ATAATTAAGAACA
35654050 AGTTAAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.59, C:0.11, G:0.07, T:0.22
Consensus pattern (14 bp):
ATAATTAAGAACAC
Found at i:35672479 original size:20 final size:21
Alignment explanation
Indices: 35672454--35672493 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
35672444 GCTCTGGAAC
*
35672454 AGGGC-ACACGCCCGTGTAGA
1 AGGGCAACACACCCGTGTAGA
35672474 AGGGCAACACACCCGTGTAG
1 AGGGCAACACACCCGTGTAG
35672494 CCATTAATTC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.28, C:0.30, G:0.33, T:0.10
Consensus pattern (21 bp):
AGGGCAACACACCCGTGTAGA
Found at i:35673667 original size:46 final size:44
Alignment explanation
Indices: 35673543--35673704 Score: 148
Period size: 46 Copynumber: 3.5 Consensus size: 44
35673533 GTGCCGGTGC
*
35673543 CATGTCCCAGACATGGTCTTACACTGACACATCTCGTAGCCGATG
1 CATGTCCCAGACAT-GTCTTACACTGACACGTCTCGTAGCCGATG
* * * *
35673588 CATGTCCCATACATGTCTTACACTGGATTACGTCTTG-AGGCTGATG
1 CATGTCCCAGACATGTCTTACACT-GA-CACGTCTCGTA-GCCGATG
* * *
35673634 CATGTCCCAGACATGTCTTACACTAGCACACGTCTC-AATGTCAATGG
1 CATGTCCCAGACATGTCTTACACT-G-ACACGTCTCGTA-GCCGAT-G
*
35673681 CATATCCCAGACATGGTCTTACAC
1 CATGTCCCAGACAT-GTCTTACAC
35673705 CGACTCTCAT
Statistics
Matches: 96, Mismatches: 14, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
44 10 0.10
45 16 0.17
46 46 0.48
47 15 0.16
48 9 0.09
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (44 bp):
CATGTCCCAGACATGTCTTACACTGACACGTCTCGTAGCCGATG
Found at i:35680773 original size:46 final size:46
Alignment explanation
Indices: 35680642--35680858 Score: 158
Period size: 46 Copynumber: 4.7 Consensus size: 46
35680632 TGTAGGTGCC
* * * * *
35680642 GATGCCATGTCCCAAACATGGTCTTAGACT-G-ACACATCTCGTAGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCACTCATCTCGTGGCT
* * *
35680688 GATGCATGTCCCAGACATGTCTTACATTGGCTTA-T-GTCTCGTGGCT
1 GATGCATGTCCCAGACATGTCTTACACTAGC--ACTCATCTCGTGGCT
* * *
35680734 GATGCATGTCCCAGACATGTCTTACACTAGCACTCGTCTCAATGTC-
1 GATGCATGTCCCAGACATGTCTTACACTAGCACTCATCTC-GTGGCT
* ** * * *
35680780 GATGCCATATCGTAGACATGGTCTTACACTGGCTCTCATAAT-GTGGCT
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCACTCAT-CTCGTGGCT
*
35680828 GATGCATGTCCTAGACATGTCTTACACTAGC
1 GATGCATGTCCCAGACATGTCTTACACTAGC
35680859 TCACGTAAGA
Statistics
Matches: 137, Mismatches: 23, Indels: 22
0.75 0.13 0.12
Matches are distributed among these distances:
44 9 0.07
45 15 0.11
46 62 0.45
47 29 0.21
48 21 0.15
49 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.21, T:0.29
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCACTCATCTCGTGGCT
Found at i:35688176 original size:20 final size:21
Alignment explanation
Indices: 35688153--35688191 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 21
35688143 TAAAGATTAT
35688153 ATAATAAT-TTAAA-ATTTTAA
1 ATAA-AATATTAAACATTTTAA
35688173 ATAAAATATTAAACATTTT
1 ATAAAATATTAAACATTTT
35688192 CAAAATATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 3 0.18
20 9 0.53
21 5 0.29
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.44
Consensus pattern (21 bp):
ATAAAATATTAAACATTTTAA
Found at i:35689608 original size:30 final size:31
Alignment explanation
Indices: 35689574--35689635 Score: 117
Period size: 30 Copynumber: 2.0 Consensus size: 31
35689564 TTCGGATCAA
35689574 TATGGAATTATTACCCAT-CGCATTCCATAT
1 TATGGAATTATTACCCATGCGCATTCCATAT
35689604 TATGGAATTATTACCCATGCGCATTCCATAT
1 TATGGAATTATTACCCATGCGCATTCCATAT
35689635 T
1 T
35689636 TTCTCCATGG
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
30 18 0.58
31 13 0.42
ACGTcount: A:0.29, C:0.23, G:0.11, T:0.37
Consensus pattern (31 bp):
TATGGAATTATTACCCATGCGCATTCCATAT
Found at i:35705497 original size:21 final size:20
Alignment explanation
Indices: 35705467--35705506 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
35705457 AATGATGATG
*
35705467 AAAAAAAAAAAAGAGAAAGA
1 AAAAAAAAAAAAAAGAAAGA
35705487 AAAAGAAAAAAAAAAGAAAG
1 AAAA-AAAAAAAAAAGAAAG
35705507 GCTCTCATGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (20 bp):
AAAAAAAAAAAAAAGAAAGA
Found at i:35706819 original size:40 final size:40
Alignment explanation
Indices: 35706764--35706941 Score: 227
Period size: 40 Copynumber: 4.5 Consensus size: 40
35706754 TGGATGATAA
** * *
35706764 CCGGGCTAAGTCCCGAAGGCATTTACGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
35706804 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
35706844 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
35706884 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
35706924 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
35706942 TACTTGGCTT
Statistics
Matches: 125, Mismatches: 11, Indels: 5
0.89 0.08 0.04
Matches are distributed among these distances:
39 16 0.13
40 109 0.87
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:35741307 original size:47 final size:47
Alignment explanation
Indices: 35741235--35741370 Score: 209
Period size: 47 Copynumber: 2.9 Consensus size: 47
35741225 TTAGGATTTT
* * *
35741235 AATGTGAACATGCGTATGTGTGATAAGGCCAAATGGCCAATGTGATG
1 AATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
35741282 AATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
35741329 AATGTGAACATGTATATATGTGGTAAGGCCGAATGGCTAATG
1 AATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATG
35741371 CAAAATGTGT
Statistics
Matches: 81, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 81 1.00
ACGTcount: A:0.34, C:0.12, G:0.29, T:0.26
Consensus pattern (47 bp):
AATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:35741474 original size:46 final size:46
Alignment explanation
Indices: 35741344--35741480 Score: 184
Period size: 46 Copynumber: 3.0 Consensus size: 46
35741334 GAACATGTAT
* * *
35741344 ATATGTGGTAAGGCCGAATGGCTAATGCAAAATGTGTATGAGATAG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* * *
35741390 ATATGAGATAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* * * *
35741436 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATG
35741481 TGTATATATA
Statistics
Matches: 78, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
46 78 1.00
ACGTcount: A:0.36, C:0.09, G:0.30, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
Found at i:35752074 original size:40 final size:40
Alignment explanation
Indices: 35752016--35752092 Score: 120
Period size: 40 Copynumber: 1.9 Consensus size: 40
35752006 TAGTTGCACG
* *
35752016 TACTTTACCCGGGAAACTTATGTGCATGGATTCTTGTACA
1 TACTTTACCCGAGAAACTTATGTGCATGAATTCTTGTACA
35752056 TACTTTACCC-AGACAACTTATGTGCATGAATTCTTGT
1 TACTTTACCCGAGA-AACTTATGTGCATGAATTCTTGT
35752093 GTGAGCTACA
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
39 2 0.06
40 32 0.94
ACGTcount: A:0.26, C:0.21, G:0.17, T:0.36
Consensus pattern (40 bp):
TACTTTACCCGAGAAACTTATGTGCATGAATTCTTGTACA
Found at i:35755014 original size:40 final size:40
Alignment explanation
Indices: 35754956--35755032 Score: 129
Period size: 40 Copynumber: 1.9 Consensus size: 40
35754946 CAGTTGCACG
*
35754956 TACTTTACCCGGGAAACTTATGTGCATGGATTCTTGTACA
1 TACTTTACCCGGGAAACTTATGTGCATGAATTCTTGTACA
35754996 TACTTTACCC-GGACAACTTATGTGCATGAATTCTTGT
1 TACTTTACCCGGGA-AACTTATGTGCATGAATTCTTGT
35755033 GTGAGCTGTA
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
39 3 0.09
40 32 0.91
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.36
Consensus pattern (40 bp):
TACTTTACCCGGGAAACTTATGTGCATGAATTCTTGTACA
Found at i:35783829 original size:22 final size:24
Alignment explanation
Indices: 35783775--35783831 Score: 66
Period size: 23 Copynumber: 2.5 Consensus size: 24
35783765 TAATATAAGT
*
35783775 AAAAAAATAA-AAACAATATATTG
1 AAAAAAATAATAAACAATATATTC
*
35783798 AAAAATAATAATTAA-AATA-ATTC
1 AAAAA-AATAATAAACAATATATTC
35783821 AAAAAAATAAT
1 AAAAAAATAAT
35783832 GTCTAACTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
22 6 0.20
23 13 0.43
24 9 0.30
25 2 0.07
ACGTcount: A:0.70, C:0.04, G:0.02, T:0.25
Consensus pattern (24 bp):
AAAAAAATAATAAACAATATATTC
Found at i:35792774 original size:3 final size:3
Alignment explanation
Indices: 35792766--35792797 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
35792756 AAAGCTAGCT
35792766 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
35792798 TAAGGCAAAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:35794683 original size:12 final size:13
Alignment explanation
Indices: 35794657--35794699 Score: 52
Period size: 13 Copynumber: 3.3 Consensus size: 13
35794647 TTTATAATTC
35794657 TTTATAGTAATAT
1 TTTATAGTAATAT
35794670 TTTATAGT-ATAT
1 TTTATAGTAATAT
* *
35794682 TTTAGTAATAAAAT
1 TTTA-TAGTAATAT
35794696 TTTA
1 TTTA
35794700 GATTATTTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
12 8 0.31
13 11 0.42
14 7 0.27
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.53
Consensus pattern (13 bp):
TTTATAGTAATAT
Found at i:35795139 original size:20 final size:19
Alignment explanation
Indices: 35795091--35795139 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 19
35795081 AGAACATTTT
**
35795091 AAAATTAAATTTTTCATTA
1 AAAATTAAATTTAACATTA
*
35795110 AAATTGTAAATTTAACTATTA
1 AAAAT-TAAATTTAAC-ATTA
35795131 AAAATTAAA
1 AAAATTAAA
35795140 ACATAACTAA
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
19 4 0.17
20 12 0.50
21 8 0.33
ACGTcount: A:0.53, C:0.04, G:0.02, T:0.41
Consensus pattern (19 bp):
AAAATTAAATTTAACATTA
Found at i:35797278 original size:40 final size:40
Alignment explanation
Indices: 35797228--35797356 Score: 129
Period size: 40 Copynumber: 3.2 Consensus size: 40
35797218 TTTTTGGATA
*
35797228 AAAAACGCCGCTATAGATCAAGAATTAGCGGCGCTTTTTG
1 AAAAACGCCGCTATAGATCAAGAATTAGCGGCGCTTTTTC
* * * * * *
35797268 AAAAATGCCGCTATAAATCGAGCATTAG-TG-GCATTTTC
1 AAAAACGCCGCTATAGATCAAGAATTAGCGGCGCTTTTTC
* *
35797306 AAAAAGCGCCGCTATAGAT-AGAGCATTTAGCGGCGCTTTTTT
1 AAAAA-CGCCGCTATAGATCA-AG-AATTAGCGGCGCTTTTTC
35797348 AAAAACGCC
1 AAAAACGCC
35797357 ACAAAAAAAT
Statistics
Matches: 69, Mismatches: 15, Indels: 9
0.74 0.16 0.10
Matches are distributed among these distances:
38 11 0.16
39 14 0.20
40 28 0.41
41 5 0.07
42 11 0.16
ACGTcount: A:0.33, C:0.20, G:0.21, T:0.26
Consensus pattern (40 bp):
AAAAACGCCGCTATAGATCAAGAATTAGCGGCGCTTTTTC
Found at i:35797498 original size:40 final size:39
Alignment explanation
Indices: 35797393--35797533 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 39
35797383 CTTTAGTGGC
* *
35797393 ATTAGCGTGCTTTTTGAAAAACGCTGCTATAGATCGAGC-
1 ATTAGCGTGCTTTTTGAAAAACGCCGCTATAGGTCGA-CT
*
35797432 ATTA--GTGC-TTTTGAAAAACGCTGCTATAGGTCGACT
1 ATTAGCGTGCTTTTTGAAAAACGCCGCTATAGGTCGACT
35797468 ATTAGCGGTGCTTTTTGAAAAACGCCGCTATAGGTCGACT
1 ATTAGC-GTGCTTTTTGAAAAACGCCGCTATAGGTCGACT
35797508 ATTAGCG-GCACTTTTTGAAAAACGCC
1 ATTAGCGTG--CTTTTTGAAAAACGCC
35797534 ACAAAAAAAT
Statistics
Matches: 93, Mismatches: 2, Indels: 13
0.86 0.02 0.12
Matches are distributed among these distances:
35 1 0.01
36 29 0.31
37 4 0.04
38 1 0.01
39 9 0.10
40 49 0.53
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (39 bp):
ATTAGCGTGCTTTTTGAAAAACGCCGCTATAGGTCGACT
Found at i:35798001 original size:14 final size:14
Alignment explanation
Indices: 35797957--35798091 Score: 67
Period size: 14 Copynumber: 9.5 Consensus size: 14
35797947 TTACATTATA
35797957 GTTTAGGGTTTAAG
1 GTTTAGGGTTTAAG
* ** *
35797971 GTTTATGGCATATG
1 GTTTAGGGTTTAAG
35797985 GTTTAGGGTTTAAG
1 GTTTAGGGTTTAAG
35797999 GTTTAGGAG-TTACTA-
1 GTTTAGG-GTTTA--AG
* * *
35798014 TTTTAAGGTTTATG
1 GTTTAGGGTTTAAG
** * *
35798028 GACTATGAGTTTAGG
1 GTTTA-GGGTTTAAG
* * *
35798043 GATTATGGTTTATG
1 GTTTAGGGTTTAAG
*
35798057 GTTTATGGTTTAAG
1 GTTTAGGGTTTAAG
* *
35798071 GGTTGGGGTTTAAG
1 GTTTAGGGTTTAAG
35798085 GTTTAGG
1 GTTTAGG
35798092 TGTTAGGAGT
Statistics
Matches: 87, Mismatches: 28, Indels: 12
0.69 0.22 0.09
Matches are distributed among these distances:
14 67 0.77
15 19 0.22
16 1 0.01
ACGTcount: A:0.21, C:0.02, G:0.33, T:0.44
Consensus pattern (14 bp):
GTTTAGGGTTTAAG
Found at i:35798057 original size:7 final size:7
Alignment explanation
Indices: 35797952--35798068 Score: 67
Period size: 7 Copynumber: 16.4 Consensus size: 7
35797942 ATTAATTACA
*
35797952 TTATAGT
1 TTATGGT
*
35797959 TTAGGGT
1 TTATGGT
*
35797966 TTAAGGT
1 TTATGGT
*
35797973 TTATGGC
1 TTATGGT
*
35797980 ATATGGT
1 TTATGGT
*
35797987 TTAGGGT
1 TTATGGT
*
35797994 TTAAGGT
1 TTATGGT
*
35798001 TTAGGAGT
1 TTATG-GT
35798009 TACTAT--T
1 T--TATGGT
*
35798016 TTAAGGT
1 TTATGGT
*
35798023 TTATGGA
1 TTATGGT
*
35798030 CTATGAGT
1 TTATG-GT
* *
35798038 TTAGGGA
1 TTATGGT
35798045 TTATGGT
1 TTATGGT
35798052 TTATGGT
1 TTATGGT
35798059 TTATGGT
1 TTATGGT
35798066 TTA
1 TTA
35798069 AGGGTTGGGG
Statistics
Matches: 82, Mismatches: 22, Indels: 12
0.71 0.19 0.10
Matches are distributed among these distances:
5 2 0.02
7 71 0.87
8 7 0.09
10 2 0.02
ACGTcount: A:0.23, C:0.03, G:0.28, T:0.46
Consensus pattern (7 bp):
TTATGGT
Found at i:35799631 original size:89 final size:89
Alignment explanation
Indices: 35799480--35799680 Score: 339
Period size: 89 Copynumber: 2.3 Consensus size: 89
35799470 GTCTGTTATA
*
35799480 AAATTTGCCCTCAATCTGTCTTTGGAACCTTGATTCAATTGTTGCCATACGACTTGGTTCAATGC
1 AAATTTGCCCCCAATCTGTCTTTGGAACCTTGATTCAATTGTTGCCATACGACTTGGTTCAATGC
*
35799545 TTCTGAATGTTAGTCTTTGTTTCT
66 TTCTGAATGTTAGTATTTGTTTCT
* *
35799569 AAATTTGCCCCCAATCTGTCTTTGGAACCTTGATTCATTTGTTGCGATACGACTTGGTTCAATGC
1 AAATTTGCCCCCAATCTGTCTTTGGAACCTTGATTCAATTGTTGCCATACGACTTGGTTCAATGC
35799634 TTCTGAATGTTAGTATTTGTTTCT
66 TTCTGAATGTTAGTATTTGTTTCT
* * *
35799658 TAATTTGCCCCCAGTCTATCTTT
1 AAATTTGCCCCCAATCTGTCTTT
35799681 TGGACTTTAC
Statistics
Matches: 105, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
89 105 1.00
ACGTcount: A:0.20, C:0.21, G:0.16, T:0.43
Consensus pattern (89 bp):
AAATTTGCCCCCAATCTGTCTTTGGAACCTTGATTCAATTGTTGCCATACGACTTGGTTCAATGC
TTCTGAATGTTAGTATTTGTTTCT
Found at i:35800398 original size:27 final size:27
Alignment explanation
Indices: 35800360--35800413 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
35800350 AATTCTAGTG
35800360 CTGTACTTGCACAAAATAAGTTTTCAA
1 CTGTACTTGCACAAAATAAGTTTTCAA
*
35800387 CTGTACTTGCACAAAATAATTTTTCAA
1 CTGTACTTGCACAAAATAAGTTTTCAA
35800414 TCATATTTTC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.37, C:0.19, G:0.09, T:0.35
Consensus pattern (27 bp):
CTGTACTTGCACAAAATAAGTTTTCAA
Found at i:35802458 original size:42 final size:43
Alignment explanation
Indices: 35802278--35802520 Score: 310
Period size: 43 Copynumber: 5.7 Consensus size: 43
35802268 ATAAATTTTT
* **
35802278 TAAAGGTCATGATT-TTTAGCGGCGTTTGTAAGAAAAGCGCCGC
1 TAAAGGTCATG-TTCTTTAGCGGCGTTTTTGGGAAAAGCGCCGC
*
35802321 TAAAGGTCATGTTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGC
1 TAAAGGTCATGTTCTTTAGCGGCGTTTTTGGGAAAAGCGCCGC
** * *
35802364 TAAAGGTCATGACCTCTAGCGGCATTTTTGGGAAAAGCGCCGC
1 TAAAGGTCATGTTCTTTAGCGGCGTTTTTGGGAAAAGCGCCGC
* *
35802407 TAAAGGTCATGTTATTTAGCGGCGTTTTTGGG-AAAGCGCCAC
1 TAAAGGTCATGTTCTTTAGCGGCGTTTTTGGGAAAAGCGCCGC
* * *
35802449 TAAAAGTCATGTTCTTTAGCGGCATTTTTGGGAAAAGCGCCGT
1 TAAAGGTCATGTTCTTTAGCGGCGTTTTTGGGAAAAGCGCCGC
* ** *
35802492 TAAAGATCATGACCTTTAGCGGCATTTTT
1 TAAAGGTCATGTTCTTTAGCGGCGTTTTT
35802521 TTTCATAAAC
Statistics
Matches: 176, Mismatches: 22, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
42 40 0.23
43 136 0.77
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (43 bp):
TAAAGGTCATGTTCTTTAGCGGCGTTTTTGGGAAAAGCGCCGC
Found at i:35802512 original size:128 final size:129
Alignment explanation
Indices: 35802278--35802520 Score: 373
Period size: 128 Copynumber: 1.9 Consensus size: 129
35802268 ATAAATTTTT
* *
35802278 TAAAGGTCATGATTTTTAGCGGCGTTTGTAAGAAAAGCGCCGCTAAAGGTCATGTTCTTTAGCGG
1 TAAAGGTCATGATTTTTAGCGGCGTTTGTAAGAAAAGCGCCACTAAAAGTCATGTTCTTTAGCGG
* *
35802343 CGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGACCTCTAGCGGCATTTTTGGGAAAAGCGCCGC
66 CATTTGTGGGAAAAGCGCCGCTAAAGATCATGACCTCTAGCGGCATTTTTGGGAAAAGCGCCGC
** *
35802407 TAAAGGTCATG-TTATTTAGCGGCGTTT-TTGGGAAAGCGCCACTAAAAGTCATGTTCTTTAGCG
1 TAAAGGTCATGATT-TTTAGCGGCGTTTGTAAGAAAAGCGCCACTAAAAGTCATGTTCTTTAGCG
* * *
35802470 GCATTTTTGGGAAAAGCGCCGTTAAAGATCATGACCTTTAGCGGCATTTTT
65 GCATTTGTGGGAAAAGCGCCGCTAAAGATCATGACCTCTAGCGGCATTTTT
35802521 TTTCATAAAC
Statistics
Matches: 103, Mismatches: 10, Indels: 3
0.89 0.09 0.03
Matches are distributed among these distances:
128 79 0.77
129 24 0.23
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (129 bp):
TAAAGGTCATGATTTTTAGCGGCGTTTGTAAGAAAAGCGCCACTAAAAGTCATGTTCTTTAGCGG
CATTTGTGGGAAAAGCGCCGCTAAAGATCATGACCTCTAGCGGCATTTTTGGGAAAAGCGCCGC
Found at i:35804087 original size:52 final size:53
Alignment explanation
Indices: 35803988--35804097 Score: 141
Period size: 58 Copynumber: 2.0 Consensus size: 53
35803978 CTTAAGCTGG
35803988 AACACACTAACACCTGCACATTAATTCGGCTAAAACAAAGACAAATTAAATAGCAGCA
1 AACACACTAACACCTGCACATTAATTCGGCT-----AAAGACAAATTAAATAGCAGCA
* * *
35804046 AACACATTAATACCTGCACATTAATTCGGCT-AAGACAAATTAATTAGCAGCA
1 AACACACTAACACCTGCACATTAATTCGGCTAAAGACAAATTAAATAGCAGCA
35804098 GCTAATAAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 6
0.84 0.05 0.10
Matches are distributed among these distances:
52 20 0.41
58 29 0.59
ACGTcount: A:0.45, C:0.23, G:0.11, T:0.21
Consensus pattern (53 bp):
AACACACTAACACCTGCACATTAATTCGGCTAAAGACAAATTAAATAGCAGCA
Found at i:35805533 original size:46 final size:47
Alignment explanation
Indices: 35805408--35805570 Score: 140
Period size: 46 Copynumber: 3.5 Consensus size: 47
35805398 GTACTGATGC
* * * *
35805408 CATGTCCCAGACATGGTCTTACACT-GAC-ACATCTCATA-ACCGAT-G
1 CATGTCCCAGACAT-GTCTTACACTAGCCTACGTCTCA-AGGCCGATAA
* * *
35805453 CATGTCTCAGACATGTCTTACACTAGCTTACGTCTCGAGGCCGA-AA
1 CATGTCCCAGACATGTCTTACACTAGCCTACGTCTCAAGGCCGATAA
* * **
35805499 CATGTCCCAAACATGTCTTACACTAGCACT-CGTCTCAATGCCGATGC
1 CATGTCCCAGACATGTCTTACACTAGC-CTACGTCTCAAGGCCGATAA
*
35805546 CATGTCCTAGACATGGTCTTACACT
1 CATGTCCCAGACAT-GTCTTACACT
35805571 GGCTCTCATA
Statistics
Matches: 95, Mismatches: 16, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
44 10 0.11
45 15 0.16
46 47 0.49
47 13 0.14
48 10 0.11
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (47 bp):
CATGTCCCAGACATGTCTTACACTAGCCTACGTCTCAAGGCCGATAA
Found at i:35805880 original size:65 final size:65
Alignment explanation
Indices: 35805776--35805906 Score: 253
Period size: 65 Copynumber: 2.0 Consensus size: 65
35805766 AATGTAGTTG
35805776 TACTATTTACATACAAATTACCTCGGATTACAAAATGTGACGACTAGTCGATTTAGTCGATTTGC
1 TACTATTTACATACAAATTACCTCGGATTACAAAATGTGACGACTAGTCGATTTAGTCGATTTGC
*
35805841 TACTATTTACATACAACTTACCTCGGATTACAAAATGTGACGACTAGTCGATTTAGTCGATTTGC
1 TACTATTTACATACAAATTACCTCGGATTACAAAATGTGACGACTAGTCGATTTAGTCGATTTGC
35805906 T
1 T
35805907 TGGCTTTCCC
Statistics
Matches: 65, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
65 65 1.00
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.34
Consensus pattern (65 bp):
TACTATTTACATACAAATTACCTCGGATTACAAAATGTGACGACTAGTCGATTTAGTCGATTTGC
Found at i:35807060 original size:3 final size:3
Alignment explanation
Indices: 35807052--35807091 Score: 71
Period size: 3 Copynumber: 13.0 Consensus size: 3
35807042 ATCAACATTC
35807052 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCAT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TC-T TCT
35807092 CATTTAATGA
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
3 33 0.92
4 3 0.08
ACGTcount: A:0.03, C:0.33, G:0.00, T:0.65
Consensus pattern (3 bp):
TCT
Found at i:35807800 original size:21 final size:20
Alignment explanation
Indices: 35807774--35807827 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 20
35807764 ATTTTGATGA
*
35807774 AGGTATCGATACCTTAGGCTT
1 AGGTATCGATACC-TAGCCTT
*
35807795 AGGTATCAATACCTAGCCTT
1 AGGTATCGATACCTAGCCTT
* *
35807815 TGATATCGATACC
1 AGGTATCGATACC
35807828 AATGACAAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
20 16 0.57
21 12 0.43
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (20 bp):
AGGTATCGATACCTAGCCTT
Found at i:35808283 original size:21 final size:21
Alignment explanation
Indices: 35808215--35808284 Score: 54
Period size: 21 Copynumber: 3.2 Consensus size: 21
35808205 TCATTTTAAC
*
35808215 TCATTGAGTTGTGGTCTGAGT
1 TCATTGAGTTATGGTCTGAGT
* *
35808236 TCA-TGA-TATATGTGGCACCTGAAT
1 TCATTGAGT-TA--TGG--TCTGAGT
35808260 TCATTGAGTTATGGTCTGAGT
1 TCATTGAGTTATGGTCTGAGT
35808281 TCAT
1 TCAT
35808285 GATGTATGTG
Statistics
Matches: 37, Mismatches: 5, Indels: 14
0.66 0.09 0.25
Matches are distributed among these distances:
19 1 0.03
20 4 0.11
21 12 0.32
22 3 0.08
23 3 0.08
24 8 0.22
25 5 0.14
26 1 0.03
ACGTcount: A:0.21, C:0.13, G:0.26, T:0.40
Consensus pattern (21 bp):
TCATTGAGTTATGGTCTGAGT
Found at i:35811190 original size:18 final size:18
Alignment explanation
Indices: 35811167--35811206 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
35811157 TATATAATTT
*
35811167 AAAAATA-TATAATACATC
1 AAAAATACTA-AAAACATC
35811185 AAAAATACTAAAAACATC
1 AAAAATACTAAAAACATC
35811203 AAAA
1 AAAA
35811207 TAAATATTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 18 0.90
19 2 0.10
ACGTcount: A:0.68, C:0.12, G:0.00, T:0.20
Consensus pattern (18 bp):
AAAAATACTAAAAACATC
Found at i:35811326 original size:30 final size:30
Alignment explanation
Indices: 35811290--35811348 Score: 109
Period size: 30 Copynumber: 2.0 Consensus size: 30
35811280 CTTAACAAGA
35811290 AAATGTCTCTAAAATAATAACAAAATTAAT
1 AAATGTCTCTAAAATAATAACAAAATTAAT
*
35811320 AAATGTCTTTAAAATAATAACAAAATTAA
1 AAATGTCTCTAAAATAATAACAAAATTAA
35811349 CAATAAAATA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.58, C:0.08, G:0.03, T:0.31
Consensus pattern (30 bp):
AAATGTCTCTAAAATAATAACAAAATTAAT
Found at i:35811436 original size:22 final size:22
Alignment explanation
Indices: 35811389--35811438 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
35811379 CATTAACAAC
* *
35811389 AAAATAGTAGCAACATAATAGT
1 AAAATAGTAGCAAAATAAGAGT
*
35811411 AAAATGGTAGCAAAATAAGGAG-
1 AAAATAGTAGCAAAATAA-GAGT
35811433 AAAATA
1 AAAATA
35811439 ACAAGAAAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
22 21 0.91
23 2 0.09
ACGTcount: A:0.58, C:0.06, G:0.18, T:0.18
Consensus pattern (22 bp):
AAAATAGTAGCAAAATAAGAGT
Found at i:35811825 original size:39 final size:39
Alignment explanation
Indices: 35811755--35811829 Score: 98
Period size: 39 Copynumber: 1.9 Consensus size: 39
35811745 TAAAATTAGT
* *
35811755 AAAAGGAAAAAAATAATATAAATTTAATAATTTTTTTGG
1 AAAAAGAAAAAAATAATATAAATGTAATAATTTTTTTGG
* *
35811794 AAAAAGAAAAGAAATAAT-TGAATGTATTAATTTTTT
1 AAAAAGAAAA-AAATAATATAAATGTAATAATTTTTT
35811830 ATAAGGTACA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
39 24 0.77
40 7 0.23
ACGTcount: A:0.53, C:0.00, G:0.11, T:0.36
Consensus pattern (39 bp):
AAAAAGAAAAAAATAATATAAATGTAATAATTTTTTTGG
Found at i:35825311 original size:15 final size:15
Alignment explanation
Indices: 35825291--35825322 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
35825281 TATGCATGTA
*
35825291 AAATATGAAAGACAT
1 AAATATAAAAGACAT
35825306 AAATATAAAAGACAT
1 AAATATAAAAGACAT
35825321 AA
1 AA
35825323 TAGTGAAATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.66, C:0.06, G:0.09, T:0.19
Consensus pattern (15 bp):
AAATATAAAAGACAT
Found at i:35835336 original size:104 final size:104
Alignment explanation
Indices: 35835156--35835379 Score: 369
Period size: 104 Copynumber: 2.2 Consensus size: 104
35835146 TGTATATAAA
** * *
35835156 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
35835221 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* *
35835260 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCG-TGATCCACCATATCT
*
35835324 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCTG
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
35835364 AGGGGTTGCTAAGTGC
1 AGGGGTTGCTAAGTGC
35835380 GATATCCATT
Statistics
Matches: 112, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
104 111 0.99
105 1 0.01
ACGTcount: A:0.18, C:0.19, G:0.32, T:0.32
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:35835431 original size:71 final size:72
Alignment explanation
Indices: 35835298--35835449 Score: 243
Period size: 71 Copynumber: 2.1 Consensus size: 72
35835288 TCATTGGTGG
* * *
35835298 TGCTAAGTGCGATATCCACCATATCTTTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCT
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
35835363 GAGGGGT
66 GAGGGGT
***
35835370 TGCTAAGTGCGATATCCATTGTATATTTGAAATG-AAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
35835434 GAGGGGT
66 GAGGGGT
35835441 TGCTAAGTG
1 TGCTAAGTG
35835450 ATGATTCCCC
Statistics
Matches: 74, Mismatches: 6, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
71 44 0.59
72 30 0.41
ACGTcount: A:0.23, C:0.16, G:0.30, T:0.31
Consensus pattern (72 bp):
TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
GAGGGGT
Found at i:35838236 original size:20 final size:20
Alignment explanation
Indices: 35838211--35838250 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
35838201 TATCTCTGAG
35838211 GTATCGATACCTAAGCAATT
1 GTATCGATACCTAAGCAATT
* *
35838231 GTATCGATACTTTAGCAATT
1 GTATCGATACCTAAGCAATT
35838251 TTTCTTAATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.33, C:0.17, G:0.15, T:0.35
Consensus pattern (20 bp):
GTATCGATACCTAAGCAATT
Found at i:35839555 original size:17 final size:17
Alignment explanation
Indices: 35839509--35839565 Score: 53
Period size: 17 Copynumber: 3.4 Consensus size: 17
35839499 TAAAATTAGT
*
35839509 TATATTTTAAATTTATCA
1 TATATTTT-AATTTATAA
* * *
35839527 TACATATAAATTTATAA
1 TATATTTTAATTTATAA
*
35839544 TATATTTTAATTAATAA
1 TATATTTTAATTTATAA
35839561 -ATATT
1 TATATT
35839566 AGATAAAATA
Statistics
Matches: 31, Mismatches: 8, Indels: 2
0.76 0.20 0.05
Matches are distributed among these distances:
16 5 0.16
17 21 0.68
18 5 0.16
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.51
Consensus pattern (17 bp):
TATATTTTAATTTATAA
Found at i:35843982 original size:27 final size:26
Alignment explanation
Indices: 35843950--35844037 Score: 86
Period size: 27 Copynumber: 3.2 Consensus size: 26
35843940 TTGAGGGTGT
*
35843950 CACAAACACTTCTTTATGATAGATTGC
1 CACAAACACTTCTTT-TCATAGATTGC
** *
35843977 CACAAAGGCTTTCTTTTTCATAGATTAC
1 CACAAACAC-TTC-TTTTCATAGATTGC
* *
35844005 CACAAATACTTCATTTTCATAAATTGC
1 CACAAACACTTC-TTTTCATAGATTGC
35844032 CACAAA
1 CACAAA
35844038 GGCTTCATTT
Statistics
Matches: 50, Mismatches: 9, Indels: 4
0.79 0.14 0.06
Matches are distributed among these distances:
27 28 0.56
28 19 0.38
29 3 0.06
ACGTcount: A:0.35, C:0.23, G:0.08, T:0.34
Consensus pattern (26 bp):
CACAAACACTTCTTTTCATAGATTGC
Found at i:35843992 original size:28 final size:27
Alignment explanation
Indices: 35843959--35844042 Score: 89
Period size: 27 Copynumber: 3.0 Consensus size: 27
35843949 TCACAAACAC
*
35843959 TTCTTTATGATAGATTGCCACAAAGGCT
1 TTCTTT-TCATAGATTGCCACAAAGGCT
* **
35843987 TTCTTTTTCATAGATTACCACAAATAC-
1 TTC-TTTTCATAGATTGCCACAAAGGCT
*
35844014 TTCATTTTCATAAATTGCCACAAAGGCT
1 TTC-TTTTCATAGATTGCCACAAAGGCT
35844042 T
1 T
35844043 CATTTTTTTG
Statistics
Matches: 45, Mismatches: 9, Indels: 4
0.78 0.16 0.07
Matches are distributed among these distances:
27 22 0.49
28 20 0.44
29 3 0.07
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.38
Consensus pattern (27 bp):
TTCTTTTCATAGATTGCCACAAAGGCT
Found at i:35844043 original size:27 final size:27
Alignment explanation
Indices: 35843972--35844048 Score: 100
Period size: 27 Copynumber: 2.8 Consensus size: 27
35843962 TTTATGATAG
* *
35843972 ATTGCCACAAAGGCTTTCTTTTTCATAG
1 ATTGCCACAAAGGC-TTCATTTTCATAA
* **
35844000 ATTACCACAAATACTTCATTTTCATAA
1 ATTGCCACAAAGGCTTCATTTTCATAA
35844027 ATTGCCACAAAGGCTTCATTTT
1 ATTGCCACAAAGGCTTCATTTT
35844049 TTTGGTGTGT
Statistics
Matches: 41, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
27 30 0.73
28 11 0.27
ACGTcount: A:0.31, C:0.22, G:0.09, T:0.38
Consensus pattern (27 bp):
ATTGCCACAAAGGCTTCATTTTCATAA
Found at i:35846503 original size:15 final size:15
Alignment explanation
Indices: 35846483--35846517 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
35846473 TCACCCACTA
35846483 GCAAAGACAAAACTT
1 GCAAAGACAAAACTT
35846498 GCAAAGACAAAACTT
1 GCAAAGACAAAACTT
35846513 GCAAA
1 GCAAA
35846518 AATTCATGAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.54, C:0.20, G:0.14, T:0.11
Consensus pattern (15 bp):
GCAAAGACAAAACTT
Found at i:35848951 original size:22 final size:22
Alignment explanation
Indices: 35848923--35848967 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
35848913 GGCGTGTGAC
35848923 CCCTATTTTAGTGAAAAATTTT
1 CCCTATTTTAGTGAAAAATTTT
35848945 CCCTATTTTAGTGAAAAATTTT
1 CCCTATTTTAGTGAAAAATTTT
35848967 C
1 C
35848968 TAAGTGTTGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.31, C:0.16, G:0.09, T:0.44
Consensus pattern (22 bp):
CCCTATTTTAGTGAAAAATTTT
Found at i:35853091 original size:37 final size:37
Alignment explanation
Indices: 35853049--35853125 Score: 138
Period size: 37 Copynumber: 2.1 Consensus size: 37
35853039 TTGCACGGGG
35853049 TACCTATTTCTATTATTTCAGATAGAGA-TCTGAGGTT
1 TACCTATTTCTATTATTTCAGATAGAGATTC-GAGGTT
35853086 TACCTATTTCTATTATTTCAGATAGAGATTCGAGGTT
1 TACCTATTTCTATTATTTCAGATAGAGATTCGAGGTT
35853123 TAC
1 TAC
35853126 TTCGAGGTTT
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
37 37 0.95
38 2 0.05
ACGTcount: A:0.27, C:0.14, G:0.16, T:0.43
Consensus pattern (37 bp):
TACCTATTTCTATTATTTCAGATAGAGATTCGAGGTT
Found at i:35858025 original size:42 final size:43
Alignment explanation
Indices: 35857976--35858082 Score: 135
Period size: 43 Copynumber: 2.5 Consensus size: 43
35857966 TGAGATTATG
* ** *
35857976 TGTAAGACCATATCTTGGATA-TGGCATCGATATGAGATTTCT
1 TGTAAGACCATATCTGGGATATTGGCATCGATATGAGATCCCA
* * *
35858018 TTTAAGACCATAGCTGGGCTATTGGCATCGATATGAGATCCCA
1 TGTAAGACCATATCTGGGATATTGGCATCGATATGAGATCCCA
*
35858061 TGTAAGACCATATCTGAGATAT
1 TGTAAGACCATATCTGGGATAT
35858083 CGCATTGGTT
Statistics
Matches: 53, Mismatches: 11, Indels: 1
0.82 0.17 0.02
Matches are distributed among these distances:
42 17 0.32
43 36 0.68
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32
Consensus pattern (43 bp):
TGTAAGACCATATCTGGGATATTGGCATCGATATGAGATCCCA
Found at i:35859289 original size:20 final size:20
Alignment explanation
Indices: 35859264--35859301 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
35859254 GCCTGCCCAT
35859264 ACGGGCATGTCCCAAGCCAC
1 ACGGGCATGTCCCAAGCCAC
*
35859284 ACGGGCGTGTCCCAAGCC
1 ACGGGCATGTCCCAAGCC
35859302 CTTATTTTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.21, C:0.39, G:0.29, T:0.11
Consensus pattern (20 bp):
ACGGGCATGTCCCAAGCCAC
Found at i:35860865 original size:21 final size:21
Alignment explanation
Indices: 35860836--35860920 Score: 71
Period size: 21 Copynumber: 4.0 Consensus size: 21
35860826 CCTGATCAGT
* *
35860836 ATACAACACATAAAGTGCCTA
1 ATACGACACACAAAGTGCCTA
* * *
35860857 ATACGACACACGAAGTGCTTG
1 ATACGACACACAAAGTGCCTA
* * *
35860878 ATACGGCACACGAGGTGCCTGAA
1 ATACGACACACAAAGTGCCT--A
*
35860901 ATACGACACATAAAGTGCCT
1 ATACGACACACAAAGTGCCT
35860921 GATCAGTAAA
Statistics
Matches: 49, Mismatches: 13, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
21 33 0.67
23 16 0.33
ACGTcount: A:0.38, C:0.25, G:0.20, T:0.18
Consensus pattern (21 bp):
ATACGACACACAAAGTGCCTA
Found at i:35860904 original size:23 final size:22
Alignment explanation
Indices: 35860848--35860922 Score: 82
Period size: 21 Copynumber: 3.5 Consensus size: 22
35860838 ACAACACATA
35860848 AAGTGCCT-AATACGACACACG
1 AAGTGCCTGAATACGACACACG
* *
35860869 AAGTGCTTG-ATACGGCACACG
1 AAGTGCCTGAATACGACACACG
* **
35860890 AGGTGCCTGAAATACGACACATA
1 AAGTGCCTG-AATACGACACACG
35860913 AAGTGCCTGA
1 AAGTGCCTGA
35860923 TCAGTAAAGC
Statistics
Matches: 43, Mismatches: 8, Indels: 5
0.77 0.14 0.09
Matches are distributed among these distances:
21 25 0.58
22 1 0.02
23 17 0.40
ACGTcount: A:0.35, C:0.24, G:0.24, T:0.17
Consensus pattern (22 bp):
AAGTGCCTGAATACGACACACG
Found at i:35863011 original size:31 final size:31
Alignment explanation
Indices: 35862968--35863030 Score: 108
Period size: 31 Copynumber: 2.0 Consensus size: 31
35862958 CGTGAATGCA
*
35862968 TGGAGATGGATGAGAATTTTCCCCATCTTTC
1 TGGACATGGATGAGAATTTTCCCCATCTTTC
*
35862999 TGGACATGGATGAGAATTTTCCTCATCTTTC
1 TGGACATGGATGAGAATTTTCCCCATCTTTC
35863030 T
1 T
35863031 TTCTTTATAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.22, C:0.19, G:0.21, T:0.38
Consensus pattern (31 bp):
TGGACATGGATGAGAATTTTCCCCATCTTTC
Found at i:35863733 original size:16 final size:17
Alignment explanation
Indices: 35863706--35863739 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
35863696 ATACATACAC
*
35863706 ATTCTCCATTCAATTCA
1 ATTCTCCATTCAACTCA
35863723 ATTCT-CATTCAACTCA
1 ATTCTCCATTCAACTCA
35863739 A
1 A
35863740 ATATCAATAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 11 0.69
17 5 0.31
ACGTcount: A:0.32, C:0.29, G:0.00, T:0.38
Consensus pattern (17 bp):
ATTCTCCATTCAACTCA
Found at i:35864976 original size:20 final size:19
Alignment explanation
Indices: 35864942--35864980 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
35864932 CAATCCTTAA
*
35864942 TTTTCCCTTTTTTTCTTTC
1 TTTTCCCTTTCTTTCTTTC
35864961 TTTTCTCCTTTCTTTCTTTC
1 TTTTC-CCTTTCTTTCTTTC
35864981 CTTCCCCTGC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (19 bp):
TTTTCCCTTTCTTTCTTTC
Found at i:35865361 original size:7 final size:7
Alignment explanation
Indices: 35865339--35865394 Score: 55
Period size: 7 Copynumber: 8.1 Consensus size: 7
35865329 ATTTCATAAT
35865339 ATAATATA
1 ATAAT-TA
35865347 AT-ATTA
1 ATAATTA
35865353 ATAATTA
1 ATAATTA
35865360 ATAATTA
1 ATAATTA
35865367 ATAATT-
1 ATAATTA
*
35865373 ATAA-AA
1 ATAATTA
35865379 ATAATTTA
1 ATAA-TTA
*
35865387 ATATTTA
1 ATAATTA
35865394 A
1 A
35865395 ATAAATATCT
Statistics
Matches: 41, Mismatches: 3, Indels: 9
0.77 0.06 0.17
Matches are distributed among these distances:
6 12 0.29
7 23 0.56
8 6 0.15
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (7 bp):
ATAATTA
Found at i:35865400 original size:20 final size:21
Alignment explanation
Indices: 35865334--35865401 Score: 70
Period size: 20 Copynumber: 3.3 Consensus size: 21
35865324 AATTTATTTC
* *
35865334 ATAATATAATATAATATTAATA
1 ATAA-ATAATTTAATATTTATA
* *
35865356 ATTAATAA-TTAATAATTATA
1 ATAAATAATTTAATATTTATA
35865376 A-AAATAATTTAATATTTA-A
1 ATAAATAATTTAATATTTATA
35865395 ATAAATA
1 ATAAATA
35865402 TCTATTTATT
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
19 7 0.18
20 24 0.63
21 4 0.11
22 3 0.08
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (21 bp):
ATAAATAATTTAATATTTATA
Found at i:35878737 original size:16 final size:16
Alignment explanation
Indices: 35878718--35878750 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
35878708 TGATGACTTG
35878718 TTTGCATAGTAGTTGT
1 TTTGCATAGTAGTTGT
*
35878734 TTTGCATAGTGGTTGT
1 TTTGCATAGTAGTTGT
35878750 T
1 T
35878751 CTAAGCATTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.15, C:0.06, G:0.27, T:0.52
Consensus pattern (16 bp):
TTTGCATAGTAGTTGT
Found at i:35880885 original size:60 final size:60
Alignment explanation
Indices: 35880809--35880936 Score: 157
Period size: 60 Copynumber: 2.1 Consensus size: 60
35880799 CGATTTTGCT
* * * * *
35880809 ACAAAGGCTTTAACATATGACAGGTTTTGCCACTAGGGCTCACATATAACAAAGACAACC
1 ACAAAGGCTTCAACATATAACAGATTCTGCCACTAAGGCTCACATATAACAAAGACAACC
* * * * **
35880869 ACAAAGGCTTCCACATATAATAGATTCTGCCACTAAGGCTCACATATAATAGATTCAACC
1 ACAAAGGCTTCAACATATAACAGATTCTGCCACTAAGGCTCACATATAACAAAGACAACC
35880929 ACAAAGGC
1 ACAAAGGC
35880937 ATCACTTTAA
Statistics
Matches: 57, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
60 57 1.00
ACGTcount: A:0.39, C:0.24, G:0.15, T:0.22
Consensus pattern (60 bp):
ACAAAGGCTTCAACATATAACAGATTCTGCCACTAAGGCTCACATATAACAAAGACAACC
Found at i:35880930 original size:29 final size:30
Alignment explanation
Indices: 35880864--35880941 Score: 104
Period size: 29 Copynumber: 2.6 Consensus size: 30
35880854 ATAACAAAGA
*
35880864 CAACCACAAAGGCTTCCACATATAATAGATT
1 CAACCACAAAGGCAT-CACATATAATAGATT
** *
35880895 CTGCCACTAAGGC-TCACATATAATAGATT
1 CAACCACAAAGGCATCACATATAATAGATT
35880924 CAACCACAAAGGCATCAC
1 CAACCACAAAGGCATCAC
35880942 TTTAAGGTAA
Statistics
Matches: 40, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
29 25 0.62
30 5 0.12
31 10 0.25
ACGTcount: A:0.40, C:0.28, G:0.12, T:0.21
Consensus pattern (30 bp):
CAACCACAAAGGCATCACATATAATAGATT
Found at i:35895929 original size:51 final size:52
Alignment explanation
Indices: 35895853--35895950 Score: 171
Period size: 51 Copynumber: 1.9 Consensus size: 52
35895843 TAAATGACCA
*
35895853 TGTATATTCGGCCATATAGGTATGTACATATGTGATGTT-TATATTTTATCT
1 TGTATATTCGGCCATATAGATATGTACATATGTGATGTTATATATTTTATCT
*
35895904 TGTATATTTGGCCATATAGATATGTACATATGTGATGTTATATATTT
1 TGTATATTCGGCCATATAGATATGTACATATGTGATGTTATATATTT
35895951 GATTTTATGT
Statistics
Matches: 44, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
51 37 0.84
52 7 0.16
ACGTcount: A:0.28, C:0.08, G:0.17, T:0.47
Consensus pattern (52 bp):
TGTATATTCGGCCATATAGATATGTACATATGTGATGTTATATATTTTATCT
Found at i:35905866 original size:87 final size:87
Alignment explanation
Indices: 35905764--35905935 Score: 344
Period size: 87 Copynumber: 2.0 Consensus size: 87
35905754 ATGTGAACAG
35905764 TACCAGTAAGTAATTTAAATAGTGATGAATTTTGAGTATTCAATGAATGAGTAAAACATAAGAAA
1 TACCAGTAAGTAATTTAAATAGTGATGAATTTTGAGTATTCAATGAATGAGTAAAACATAAGAAA
35905829 TATGTTGCATGTGCAAAGATAA
66 TATGTTGCATGTGCAAAGATAA
35905851 TACCAGTAAGTAATTTAAATAGTGATGAATTTTGAGTATTCAATGAATGAGTAAAACATAAGAAA
1 TACCAGTAAGTAATTTAAATAGTGATGAATTTTGAGTATTCAATGAATGAGTAAAACATAAGAAA
35905916 TATGTTGCATGTGCAAAGAT
66 TATGTTGCATGTGCAAAGAT
35905936 GATATGTACA
Statistics
Matches: 85, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
87 85 1.00
ACGTcount: A:0.43, C:0.07, G:0.19, T:0.31
Consensus pattern (87 bp):
TACCAGTAAGTAATTTAAATAGTGATGAATTTTGAGTATTCAATGAATGAGTAAAACATAAGAAA
TATGTTGCATGTGCAAAGATAA
Found at i:35911924 original size:18 final size:19
Alignment explanation
Indices: 35911886--35911925 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
35911876 TCATTCCACA
*
35911886 ATTTCACATTTCATTTACC
1 ATTTCACATTCCATTTACC
*
35911905 ATTTCA-ATTCCATTTCCC
1 ATTTCACATTCCATTTACC
35911923 ATT
1 ATT
35911926 CTATTTTCAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 13 0.68
19 6 0.32
ACGTcount: A:0.25, C:0.28, G:0.00, T:0.47
Consensus pattern (19 bp):
ATTTCACATTCCATTTACC
Found at i:35914796 original size:385 final size:385
Alignment explanation
Indices: 35914086--35915242 Score: 2197
Period size: 385 Copynumber: 3.0 Consensus size: 385
35914076 TAGGGGCCCA
*
35914086 AATGACTTGTAGATAGGGTTAGAAACCCTAGCTCTCTTTCTCCTCGCGCTGCAAAGGATTCTGGA
1 AATGACTTTTAGATAGGGTTAGAAACCCTAGCTCTCTTTCTCCTCGCGCTGCAAAGGATTCTGGA
*
35914151 AGCTTCAAGCGCCTCAAACGTCATGCCTAATTAGCGCCCTTTCGTTTCATGAAACTCCAGAAATT
66 AGCTTCAAGCGCCTCAAACGTCATGCCCAATTAGCGCCCTTTCGTTTCATGAAACTCCAGAAATT
*
35914216 TCGGGGAGCGTCTATTGGCCTCACGTCAAGGCTCCATCAGCGCCATGACTTTCTCCTTGACCTCA
131 TCGGGGAGCGTCTATTGGCCTCACGTCAAGGCTCCATCAGCGCCACGACTTTCTCCTTGACCTCA
*
35914281 GCTACTGGATGTCGCGCCACCATCGGCGCGCGAACAATGCCGAGATCATCGCCTTCATCAGCGCG
196 GCTACTGGATGTCGCGCCACCATCGGCGCGCGAACAACGCCGAGATCATCGCCTTCATCAGCGCG
*
35914346 CCACACCTCAGCCTTGTCTTGCCACCGAGATCCTCGCGCTCCCCTGCAAACAAGGGAAAGAAATA
261 CCACACCTCAGCCTTGTCTTGCCACCGAGATCCTCGCGCTCACCTGCAAACAAGGGAAAGAAATA
*
35914411 GCGACAGGAAAGGAACAAATATGGAAAGAAACATAGCAAAAGCGAAACGAACATGGAAAG
326 GCGACAGGAAAGGAACAAATATGGAAAGAAACACAGCAAAAGCGAAACGAACATGGAAAG
35914471 AATGACTTTTAGATAGGGTTAGAAACCCTAGCTCTCTTTCTCCTCGCGCTGCAAAGGATTCTGGA
1 AATGACTTTTAGATAGGGTTAGAAACCCTAGCTCTCTTTCTCCTCGCGCTGCAAAGGATTCTGGA
*
35914536 AGCTTCAAGTGCCTCAAACGTCATGCCCAATTAGCGCCCTTTCGTTTCATGAAACTCCAGAAATT
66 AGCTTCAAGCGCCTCAAACGTCATGCCCAATTAGCGCCCTTTCGTTTCATGAAACTCCAGAAATT
*
35914601 TCGGGGAGCGTCTATTGGCCTCACGTCAAGGCTCCATCAGCGCCACGACTTTTTCCTTGACCTCA
131 TCGGGGAGCGTCTATTGGCCTCACGTCAAGGCTCCATCAGCGCCACGACTTTCTCCTTGACCTCA
*
35914666 GCTACTGGATGTCACGCCACCATCGGCGCGCGAACAACGCCGAGATCATCGCCTTCATCAGCGCG
196 GCTACTGGATGTCGCGCCACCATCGGCGCGCGAACAACGCCGAGATCATCGCCTTCATCAGCGCG
*
35914731 CCACACCTCAGCCTTGTCTTGCCACCGAGATCCTCGTGCTCACCTGCAAACAAGGGAAAGAAATA
261 CCACACCTCAGCCTTGTCTTGCCACCGAGATCCTCGCGCTCACCTGCAAACAAGGGAAAGAAATA
*
35914796 GCGACAGGTAAGGAACAAATATGGAAAGAAACACAGCAAAAGCGAAACGAACATGGAAAG
326 GCGACAGGAAAGGAACAAATATGGAAAGAAACACAGCAAAAGCGAAACGAACATGGAAAG
35914856 AATGACTTTTAGATAGGGTTAGAAACCCTAGCTCTCTTTCTCCTCGCGCTGCAAAGGATTCTGGA
1 AATGACTTTTAGATAGGGTTAGAAACCCTAGCTCTCTTTCTCCTCGCGCTGCAAAGGATTCTGGA
35914921 AGCTTCAAGCGCCTCAAACGTCATGCCCAATTAGCGCCCTTTCGTTTCATGAAACTCCAGAAATT
66 AGCTTCAAGCGCCTCAAACGTCATGCCCAATTAGCGCCCTTTCGTTTCATGAAACTCCAGAAATT
35914986 TCGGGGAGCGTCTATTGGCCTCACGTCAAGGCTCCATCAGCGCCACGACTTTCTCCTTGACCTCA
131 TCGGGGAGCGTCTATTGGCCTCACGTCAAGGCTCCATCAGCGCCACGACTTTCTCCTTGACCTCA
*
35915051 GCTACTGGATGTCGCGCCACCATCGGTGCGCGAACAACGCCGAGATCATCGCCTTCATCAGCGCG
196 GCTACTGGATGTCGCGCCACCATCGGCGCGCGAACAACGCCGAGATCATCGCCTTCATCAGCGCG
35915116 CCACACCTCAGCCTTGTCTTGCCACCGAGATCCTCGCGCTCACCTGCAAACAAGGGAAAGAAATA
261 CCACACCTCAGCCTTGTCTTGCCACCGAGATCCTCGCGCTCACCTGCAAACAAGGGAAAGAAATA
*
35915181 GCGACAGGCAAGGAACAAATATGGAAAGAAACACAGCAAAAGCGAAACGAACATGGAAAG
326 GCGACAGGAAAGGAACAAATATGGAAAGAAACACAGCAAAAGCGAAACGAACATGGAAAG
35915241 AA
1 AA
35915243 ATCAAATTGA
Statistics
Matches: 755, Mismatches: 17, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
385 755 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (385 bp):
AATGACTTTTAGATAGGGTTAGAAACCCTAGCTCTCTTTCTCCTCGCGCTGCAAAGGATTCTGGA
AGCTTCAAGCGCCTCAAACGTCATGCCCAATTAGCGCCCTTTCGTTTCATGAAACTCCAGAAATT
TCGGGGAGCGTCTATTGGCCTCACGTCAAGGCTCCATCAGCGCCACGACTTTCTCCTTGACCTCA
GCTACTGGATGTCGCGCCACCATCGGCGCGCGAACAACGCCGAGATCATCGCCTTCATCAGCGCG
CCACACCTCAGCCTTGTCTTGCCACCGAGATCCTCGCGCTCACCTGCAAACAAGGGAAAGAAATA
GCGACAGGAAAGGAACAAATATGGAAAGAAACACAGCAAAAGCGAAACGAACATGGAAAG
Done.