Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 110 of 362
Found at i:36284514 original size:40 final size:40
Alignment explanation
Indices: 36284470--36284657 Score: 281
Period size: 40 Copynumber: 4.7 Consensus size: 40
36284460 GCTACTTGCT
*
36284470 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTAGCA
36284510 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTAGCA
* *
36284550 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTAGCA
* ** * *
36284590 GAAATGCCTTCGGG-CTTAGCCTAG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTAGCA
36284629 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
36284658 CATCCGAATA
Statistics
Matches: 132, Mismatches: 13, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
38 1 0.01
39 31 0.23
40 99 0.75
41 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTAGCA
Found at i:36286553 original size:21 final size:21
Alignment explanation
Indices: 36286523--36286569 Score: 76
Period size: 21 Copynumber: 2.2 Consensus size: 21
36286513 CGTTACACGG
*
36286523 TGTTGTGACACAGGCTTGCAA
1 TGTTGCGACACAGGCTTGCAA
*
36286544 TGTTGCGACACAGGCTTGCAG
1 TGTTGCGACACAGGCTTGCAA
36286565 TGTTG
1 TGTTG
36286570 TAACATAGAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.19, C:0.19, G:0.32, T:0.30
Consensus pattern (21 bp):
TGTTGCGACACAGGCTTGCAA
Found at i:36287536 original size:2 final size:2
Alignment explanation
Indices: 36287463--36287520 Score: 62
Period size: 2 Copynumber: 29.0 Consensus size: 2
36287453 CTCACTGCCT
* * * *
36287463 TC TC TC TC TC TC TC TC TC TA TC TA TC TA TC TA TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
* *
36287505 TT TT TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC
36287521 CCCTACCTTA
Statistics
Matches: 46, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.07, C:0.40, G:0.00, T:0.53
Consensus pattern (2 bp):
TC
Found at i:36301564 original size:20 final size:21
Alignment explanation
Indices: 36301529--36301605 Score: 83
Period size: 20 Copynumber: 3.9 Consensus size: 21
36301519 TGATACGTGG
36301529 GATATGATAT--ACATGA-AT
1 GATATGATATGCACATGATAT
36301547 GATATGATATGCACATGATAT
1 GATATGATATGCACATGATAT
* *
36301568 G-TATGATATGCATACGATAT
1 GATATGATATGCACATGATAT
* *
36301588 G-TATGAAATGTACATGAT
1 GATATGATATGCACATGAT
36301606 GTAATCATAA
Statistics
Matches: 50, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
18 10 0.20
20 37 0.74
21 3 0.06
ACGTcount: A:0.39, C:0.08, G:0.19, T:0.34
Consensus pattern (21 bp):
GATATGATATGCACATGATAT
Found at i:36301684 original size:26 final size:26
Alignment explanation
Indices: 36301655--36301790 Score: 154
Period size: 26 Copynumber: 5.3 Consensus size: 26
36301645 GAGGAAGTGC
*
36301655 AAAAGGG-TTATGCCCTAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
** * **
36301680 AAAAATGCTTATGCCCTAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
36301706 AAAAGGGCTTATGCTCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* *
36301732 AAAAGGGCTTATGCCCCAATTTACTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
36301758 AAAAGGGCTT-TGCCCCAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
36301781 AAAAGAGGCT
1 AAAAG-GGCT
36301791 AGGCCTCCAG
Statistics
Matches: 94, Mismatches: 15, Indels: 5
0.82 0.13 0.04
Matches are distributed among these distances:
23 5 0.05
24 8 0.09
25 12 0.13
26 69 0.73
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.30
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:36304113 original size:14 final size:15
Alignment explanation
Indices: 36304084--36304113 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
36304074 CAAAATTTAG
36304084 ACATGATACTTTCAC
1 ACATGATACTTTCAC
36304099 ACATGATAC-TTCAC
1 ACATGATACTTTCAC
36304113 A
1 A
36304114 TATAATAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.37, C:0.27, G:0.07, T:0.30
Consensus pattern (15 bp):
ACATGATACTTTCAC
Found at i:36308814 original size:22 final size:22
Alignment explanation
Indices: 36308771--36308815 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
36308761 CTCTTAGTTC
* *
36308771 TTTAAGTATTATCTTTATGGGT
1 TTTAAGTATTATCTTAACGGGT
36308793 TTTAAGCTATT-TCTTAACGGGT
1 TTTAAG-TATTATCTTAACGGGT
36308815 T
1 T
36308816 CTATCTATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 16 0.80
23 4 0.20
ACGTcount: A:0.22, C:0.09, G:0.18, T:0.51
Consensus pattern (22 bp):
TTTAAGTATTATCTTAACGGGT
Found at i:36309275 original size:19 final size:17
Alignment explanation
Indices: 36309251--36309294 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
36309241 TAGGCCACGT
*
36309251 TGGGCCGAAGTGGACTGTG
1 TGGGCCCAA-TGGACT-TG
*
36309270 TGGGCCCAATGGGCTTG
1 TGGGCCCAATGGACTTG
36309287 TGGGCCCA
1 TGGGCCCA
36309295 CACGGATAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 10 0.43
18 5 0.22
19 8 0.35
ACGTcount: A:0.14, C:0.23, G:0.43, T:0.20
Consensus pattern (17 bp):
TGGGCCCAATGGACTTG
Found at i:36309780 original size:26 final size:26
Alignment explanation
Indices: 36309746--36309880 Score: 144
Period size: 27 Copynumber: 5.1 Consensus size: 26
36309736 AAGGCCCCTG
*
36309746 ATTTTTAAAATTACTGAAATACCCCA
1 ATTTGTAAAATTACTGAAATACCCCA
* *
36309772 AGTTGTAAAATTACTGAAATACCCATA
1 ATTTGTAAAATTACTGAAATACCC-CA
* * *
36309799 ACTTATAAAATTAGTGAAATACCCCTA
1 ATTTGTAAAATTACTGAAATACCCC-A
* *
36309826 ATTTGTAAAATTACCGAAATACCCTCG
1 ATTTGTAAAATTACTGAAATACCC-CA
** *
36309853 ATTTGCGAAATTATTGAAATACCCCA
1 ATTTGTAAAATTACTGAAATACCCCA
36309879 AT
1 AT
36309881 GGGGTAGGAT
Statistics
Matches: 89, Mismatches: 17, Indels: 6
0.79 0.15 0.05
Matches are distributed among these distances:
26 25 0.28
27 63 0.71
28 1 0.01
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.31
Consensus pattern (26 bp):
ATTTGTAAAATTACTGAAATACCCCA
Found at i:36309864 original size:54 final size:53
Alignment explanation
Indices: 36309752--36309903 Score: 153
Period size: 54 Copynumber: 2.8 Consensus size: 53
36309742 CCTGATTTTT
* * *
36309752 AAAATTACTGAAATACCCCAAGTTGTAAAATTACTGAAATACCCATAACTTAT
1 AAAATTACTGAAATACCCCAATTTGTAAAATTACCGAAATACCCATAACTTAC
* * * *
36309805 AAAATTAGTGAAATACCCCTAATTTGTAAAATTACCGAAATACCC-TCGATTTGC
1 AAAATTACTGAAATACCCC-AATTTGTAAAATTACCGAAATACCCAT-AACTTAC
* * ** **
36309859 GAAATTATTGAAATACCCCAATGGGGTAGGATTACCGAAATACCC
1 AAAATTACTGAAATACCCCAAT-TTGTAAAATTACCGAAATACCC
36309904 CTGTAGCGTA
Statistics
Matches: 83, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
53 22 0.27
54 61 0.73
ACGTcount: A:0.41, C:0.20, G:0.12, T:0.27
Consensus pattern (53 bp):
AAAATTACTGAAATACCCCAATTTGTAAAATTACCGAAATACCCATAACTTAC
Found at i:36309892 original size:27 final size:27
Alignment explanation
Indices: 36309868--36309957 Score: 126
Period size: 27 Copynumber: 3.3 Consensus size: 27
36309858 CGAAATTATT
** *
36309868 GAAATACCCCAATGGGGTAGGATTACC
1 GAAATACCCCTGTAGGGTAGGATTACC
* *
36309895 GAAATACCCCTGTAGCGTAGGATTATC
1 GAAATACCCCTGTAGGGTAGGATTACC
*
36309922 GAAATACCCTTGTAGGGTAGGATTACC
1 GAAATACCCCTGTAGGGTAGGATTACC
36309949 GAAATACCC
1 GAAATACCC
36309958 ATATATGGTA
Statistics
Matches: 55, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 55 1.00
ACGTcount: A:0.32, C:0.22, G:0.23, T:0.22
Consensus pattern (27 bp):
GAAATACCCCTGTAGGGTAGGATTACC
Found at i:36311390 original size:16 final size:17
Alignment explanation
Indices: 36311358--36311390 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
36311348 AAATAAGAAG
36311358 GGTTTTCAATGAAAACAT
1 GGTTTTCAA-GAAAACAT
36311376 GGTTTTCAA-AAAACA
1 GGTTTTCAAGAAAACA
36311391 CTTCAATATG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.42, C:0.12, G:0.15, T:0.30
Consensus pattern (17 bp):
GGTTTTCAAGAAAACAT
Found at i:36315300 original size:39 final size:39
Alignment explanation
Indices: 36315256--36315419 Score: 256
Period size: 39 Copynumber: 4.2 Consensus size: 39
36315246 TATGAGATTG
* *
36315256 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
1 AAAATATCCAGACATGAGGTCCGCAGGCTATATGCTAGA
36315295 AAAATATCCAGACATGAGGTCCGCAGGCTATATGCTAGA
1 AAAATATCCAGACATGAGGTCCGCAGGCTATATGCTAGA
36315334 AAAATATCCAGACATGAGGTCCGCAGGCTATATGCTAGA
1 AAAATATCCAGACATGAGGTCCGCAGGCTATATGCTAGA
* * * ** *
36315373 AATATATCCGGACTTGAGGTCCGCAGGCTACGTGCTGGA
1 AAAATATCCAGACATGAGGTCCGCAGGCTATATGCTAGA
36315412 AAAATATC
1 AAAATATC
36315420 TGGGTTAAAG
Statistics
Matches: 116, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 116 1.00
ACGTcount: A:0.33, C:0.21, G:0.25, T:0.21
Consensus pattern (39 bp):
AAAATATCCAGACATGAGGTCCGCAGGCTATATGCTAGA
Found at i:36323312 original size:39 final size:39
Alignment explanation
Indices: 36323268--36323394 Score: 200
Period size: 39 Copynumber: 3.3 Consensus size: 39
36323258 TATGAGATTG
36323268 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTAGA
1 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTAGA
*
36323307 AAAATATCCAGACATGAGGTCCGCAGGCTATATGCTAGA
1 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTAGA
* * ** *
36323346 AATATATCCGGACTTGAGGTCCGCAGGCTACGTGCTGGA
1 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTAGA
36323385 AAAATATCCG
1 AAAATATCCG
36323395 AGTTAAAGAC
Statistics
Matches: 80, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 80 1.00
ACGTcount: A:0.32, C:0.21, G:0.25, T:0.21
Consensus pattern (39 bp):
AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTAGA
Found at i:36323409 original size:78 final size:76
Alignment explanation
Indices: 36323267--36323421 Score: 186
Period size: 78 Copynumber: 2.0 Consensus size: 76
36323257 GTATGAGATT
* * **
36323267 GAAAATATCCGGACATGAGGTCCGCAGGCTATATGCTAGAAAAATATCCAGACATGAGGTCCGCA
1 GAAAATATCCGGACATGAGGTCCGCAGGCTACATGCTAGAAAAATATCCAGACATAAGACCCGCA
*
36323332 GGCTATATGCTA
66 GGCT-TACGCTA
* * * **
36323344 GAAATATATCCGGACTTGAGGTCCGCAGGCTACGTGCTGGAAAAATATCC-GAGTTAAAGACCCG
1 GAAA-ATATCCGGACATGAGGTCCGCAGGCTACATGCTAGAAAAATATCCAGACAT-AAGACCCG
36323408 CAGGCTTACGCTA
64 CAGGCTTACGCTA
36323421 G
1 G
36323422 TGATGTATTC
Statistics
Matches: 66, Mismatches: 10, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
77 14 0.21
78 52 0.79
ACGTcount: A:0.32, C:0.22, G:0.26, T:0.21
Consensus pattern (76 bp):
GAAAATATCCGGACATGAGGTCCGCAGGCTACATGCTAGAAAAATATCCAGACATAAGACCCGCA
GGCTTACGCTA
Found at i:36325736 original size:15 final size:13
Alignment explanation
Indices: 36325701--36325732 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
36325691 ACCATGGCAT
*
36325701 CGATATGTTACTC
1 CGATATGTGACTC
36325714 CGATATGTGACTC
1 CGATATGTGACTC
36325727 CGATAT
1 CGATAT
36325733 ATGTTTGTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.34
Consensus pattern (13 bp):
CGATATGTGACTC
Found at i:36326156 original size:250 final size:250
Alignment explanation
Indices: 36325856--36326331 Score: 934
Period size: 250 Copynumber: 1.9 Consensus size: 250
36325846 CCAATTCCGA
36325856 ATGGTTCAACGGGCAAAGATAAGTTTTGTATGAATGTATAAATCAAGCTAAGTGACCAGGTATGT
1 ATGGTTCAACGGGCAAAGATAAGTTTTGTATGAATGTATAAATCAAGCTAAGTGACCAGGTATGT
36325921 GATAGTTGATTACCTATTTGAAAATAAGGTAAGTTGATTATTTGATATGTGATACAAACATATGT
66 GATAGTTGATTACCTATTTGAAAATAAGGTAAGTTGATTATTTGATATGTGATACAAACATATGT
36325986 TTGATGTTAGTTTGAATTTGTGAGCAATTGTGAAGTATATTCAGCCATAATTTAAGTGTAATTAT
131 TTGATGTTAGTTTGAATTTGTGAGCAATTGTGAAGTATATTCAGCCATAATTTAAGTGTAATTAT
36326051 ATGGTATTAAGGTTTGATACATGAGTATATGTAAACAAGTGTTTAAAGATTCAGT
196 ATGGTATTAAGGTTTGATACATGAGTATATGTAAACAAGTGTTTAAAGATTCAGT
36326106 ATGGTTCAACGGGCAAAGATAAGTTTTGTATGAATGTATAAATCAAGCTAAGTGACCAGGTATGT
1 ATGGTTCAACGGGCAAAGATAAGTTTTGTATGAATGTATAAATCAAGCTAAGTGACCAGGTATGT
36326171 GATAGTTGATTACCTATTTGAAAATAAGGTAAGTTGATTATTTGATATGTGATACAAACATATGT
66 GATAGTTGATTACCTATTTGAAAATAAGGTAAGTTGATTATTTGATATGTGATACAAACATATGT
*
36326236 TTGATGTTAGTTTGAATTTGTGAGCAATTGTGAAGTATATTTAGCCATAATTTAAGTGTAATTAT
131 TTGATGTTAGTTTGAATTTGTGAGCAATTGTGAAGTATATTCAGCCATAATTTAAGTGTAATTAT
*
36326301 ATGGTATTAAGGTTTGGTACATGAGTATATG
196 ATGGTATTAAGGTTTGATACATGAGTATATG
36326332 ATTTTAATAG
Statistics
Matches: 224, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
250 224 1.00
ACGTcount: A:0.34, C:0.07, G:0.22, T:0.37
Consensus pattern (250 bp):
ATGGTTCAACGGGCAAAGATAAGTTTTGTATGAATGTATAAATCAAGCTAAGTGACCAGGTATGT
GATAGTTGATTACCTATTTGAAAATAAGGTAAGTTGATTATTTGATATGTGATACAAACATATGT
TTGATGTTAGTTTGAATTTGTGAGCAATTGTGAAGTATATTCAGCCATAATTTAAGTGTAATTAT
ATGGTATTAAGGTTTGATACATGAGTATATGTAAACAAGTGTTTAAAGATTCAGT
Found at i:36336213 original size:27 final size:27
Alignment explanation
Indices: 36336165--36336216 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
36336155 GCGAGGCTGC
*
36336165 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGATA
* * *
36336192 CAGATATTGTGGCTAGGCCACCAGA
1 CAGATATTGTGACGAAGCCACCAGA
36336217 ACACACACAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.33, C:0.21, G:0.25, T:0.21
Consensus pattern (27 bp):
CAGATATTGTGACGAAGCCACCAGATA
Found at i:36336317 original size:27 final size:26
Alignment explanation
Indices: 36336269--36336320 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
36336259 GCGAGGTTGC
*
36336269 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
36336295 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
36336321 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:36337004 original size:27 final size:27
Alignment explanation
Indices: 36336974--36337026 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
36336964 GGAGTAAATC
* *
36336974 GGTAGTCCTACCCTACAGGGGTATTTT
1 GGTAATCCTACCCTACAAGGGTATTTT
* *
36337001 GGTAATTCTACCTTACAAGGGTATTT
1 GGTAATCCTACCCTACAAGGGTATTT
36337027 CTGTAATTTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.23, C:0.19, G:0.23, T:0.36
Consensus pattern (27 bp):
GGTAATCCTACCCTACAAGGGTATTTT
Found at i:36337032 original size:27 final size:27
Alignment explanation
Indices: 36336981--36337034 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
36336971 ATCGGTAGTC
*
36336981 CTACCCTACAGGGGTATTTTGGTAATT
1 CTACCCTACAAGGGTATTTTGGTAATT
*
36337008 CTACCTTACAAGGGTATTTCT-GTAATT
1 CTACCCTACAAGGGTATTT-TGGTAATT
36337035 TTGTAAATCG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 23 0.96
28 1 0.04
ACGTcount: A:0.24, C:0.19, G:0.19, T:0.39
Consensus pattern (27 bp):
CTACCCTACAAGGGTATTTTGGTAATT
Found at i:36337085 original size:27 final size:26
Alignment explanation
Indices: 36337055--36337175 Score: 102
Period size: 27 Copynumber: 4.5 Consensus size: 26
36337045 AGAGTAAAAC
**
36337055 GGTAATTTTGTAAATCGAGGGTACTTT
1 GGTAATTTTACAAATCGAGGGTA-TTT
*
36337082 GGTAATTTTACAAGTCGAGGGTATTT
1 GGTAATTTTACAAATCGAGGGTATTT
* *
36337108 CAGTAATTTCACAAATC-AGGGGTATTTT
1 -GGTAATTTTACAAATCGA-GGGTA-TTT
*
36337136 GGTAATTTTACAAA-CTAGGGGTATTTT
1 GGTAATTTTACAAATCGA-GGGTA-TTT
* *
36337163 AGTAATTCTACAA
1 GGTAATTTTACAA
36337176 CTTATCTACT
Statistics
Matches: 80, Mismatches: 10, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
26 5 0.06
27 72 0.90
28 3 0.04
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.38
Consensus pattern (26 bp):
GGTAATTTTACAAATCGAGGGTATTT
Found at i:36338735 original size:46 final size:45
Alignment explanation
Indices: 36338634--36338852 Score: 181
Period size: 46 Copynumber: 4.7 Consensus size: 45
36338624 AGGGTAAGGT
* * * * *
36338634 GCCGATGCCATGTCCTAGACACGGTCTTATACCGACTATCATCTCGTA-
1 GCCGATG-CATGTCCCAGACA-TGTCTTACACTGACT-TCGTCTCG-AG
* * * *
36338682 GCTGATGCATGTCACAGACATATCTTACACTGGCTTACGTCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGACTT-CGTCTCGAG
* * * *
36338728 GCCGATGCATGTCCCAGACATGTCTTACACTAGCCCTCGTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACT-GACTTCGTCTCGAG
* * * *
36338774 GCCGCTGCCATGTCCCAGACATGGTCTTACACTGACTCTCATAAT-GTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGACT-TCGT-CTCGAG
36338822 GCCGATGCATGTCCCAGACATGTCTTACACT
1 GCCGATGCATGTCCCAGACATGTCTTACACT
36338853 AACTCACACA
Statistics
Matches: 139, Mismatches: 25, Indels: 16
0.77 0.14 0.09
Matches are distributed among these distances:
45 2 0.01
46 67 0.48
47 44 0.32
48 25 0.18
49 1 0.01
ACGTcount: A:0.22, C:0.31, G:0.20, T:0.27
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGACTTCGTCTCGAG
Found at i:36338934 original size:19 final size:19
Alignment explanation
Indices: 36338910--36338947 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
36338900 ACTTCCTAAG
*
36338910 GTTCCAACGGAAATTCTAC
1 GTTCCAAAGGAAATTCTAC
36338929 GTTCCAAAGGAAATTCTAC
1 GTTCCAAAGGAAATTCTAC
36338948 TATCTCAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.34, C:0.24, G:0.16, T:0.26
Consensus pattern (19 bp):
GTTCCAAAGGAAATTCTAC
Found at i:36341922 original size:27 final size:26
Alignment explanation
Indices: 36341868--36341922 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
36341858 ACCTTAACCT
* * *
36341868 TAGGGGTATATCAGTAATTTTGCTCC
1 TAGGGGTAAATCAGTAATTTTCCACC
*
36341894 TAGGGGTAAATCTGTAAATTTTCCACC
1 TAGGGGTAAATCAGT-AATTTTCCACC
36341921 TA
1 TA
36341923 TAAAGGTATT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
26 13 0.54
27 11 0.46
ACGTcount: A:0.27, C:0.16, G:0.20, T:0.36
Consensus pattern (26 bp):
TAGGGGTAAATCAGTAATTTTCCACC
Found at i:36346198 original size:32 final size:33
Alignment explanation
Indices: 36346162--36346225 Score: 80
Period size: 33 Copynumber: 2.0 Consensus size: 33
36346152 AACAGCAGGT
36346162 ACTGGG-CTGAAGCCC-TTTTCAGA-ATACAGTAA
1 ACTGGGCCT-AAGCCCTTTTTCAGATA-ACAGTAA
*
36346194 ACTGGGCCTTAGCCCTTTTTCAGATAACAGTA
1 ACTGGGCCTAAGCCCTTTTTCAGATAACAGTA
36346226 TGGCCCATAG
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
32 11 0.39
33 16 0.57
34 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.28
Consensus pattern (33 bp):
ACTGGGCCTAAGCCCTTTTTCAGATAACAGTAA
Found at i:36348815 original size:27 final size:25
Alignment explanation
Indices: 36348785--36348850 Score: 71
Period size: 25 Copynumber: 2.6 Consensus size: 25
36348775 ATATTTTTTC
*
36348785 TATCTAATAATAATAATTTTATAAATA
1 TATCTAATAATAA-AAATTTA-AAATA
*
36348812 TATCTAATCATAAAAATTTAAAATA
1 TATCTAATAATAAAAATTTAAAATA
*
36348837 T-CCGTAATAATAAA
1 TATC-TAATAATAAA
36348851 TATAGTAAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
24 1 0.03
25 15 0.44
26 6 0.18
27 12 0.35
ACGTcount: A:0.53, C:0.08, G:0.02, T:0.38
Consensus pattern (25 bp):
TATCTAATAATAAAAATTTAAAATA
Found at i:36355992 original size:13 final size:13
Alignment explanation
Indices: 36355974--36355999 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
36355964 ATATGTTTCA
36355974 TGATTGTTTTGGT
1 TGATTGTTTTGGT
36355987 TGATTGTTTTGGT
1 TGATTGTTTTGGT
36356000 ATGGATTCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.08, C:0.00, G:0.31, T:0.62
Consensus pattern (13 bp):
TGATTGTTTTGGT
Found at i:36357892 original size:26 final size:26
Alignment explanation
Indices: 36357863--36357912 Score: 68
Period size: 26 Copynumber: 1.9 Consensus size: 26
36357853 CTCGGCATTC
36357863 TATGTGTAC-ATTT-ATTCTCAGAAGTA
1 TATGTG-ACTATTTAATT-TCAGAAGTA
36357889 TATGTGACTATTTAATTTCAGAAG
1 TATGTGACTATTTAATTTCAGAAG
36357913 GAATTCTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
25 2 0.09
26 17 0.77
27 3 0.14
ACGTcount: A:0.32, C:0.10, G:0.16, T:0.42
Consensus pattern (26 bp):
TATGTGACTATTTAATTTCAGAAGTA
Found at i:36366318 original size:39 final size:40
Alignment explanation
Indices: 36366218--36366402 Score: 164
Period size: 40 Copynumber: 4.7 Consensus size: 40
36366208 TCGAATGATG
* * * *
36366218 TCCGGGCTAAGTCCCGAAGGC-TTTGTTCTAAGTGACCATAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AT
* * *
36366259 T-CAGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
36366298 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* * * *
36366337 TCCGAGTTAAGTCTCGAAGGCATTTGTGTGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
36366376 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
36366403 AACGAGTAGC
Statistics
Matches: 115, Mismatches: 23, Indels: 13
0.76 0.15 0.09
Matches are distributed among these distances:
39 37 0.32
40 70 0.61
41 8 0.07
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:36368089 original size:17 final size:17
Alignment explanation
Indices: 36368067--36368106 Score: 64
Period size: 17 Copynumber: 2.4 Consensus size: 17
36368057 GACTGGGTTG
36368067 TGTGGGCCTC-ATGGGCT
1 TGTGGGCC-CAATGGGCT
36368084 TGTGGGCCCAATGGGCT
1 TGTGGGCCCAATGGGCT
36368101 TGTGGG
1 TGTGGG
36368107 ACCACATGGA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
16 1 0.05
17 21 0.95
ACGTcount: A:0.07, C:0.20, G:0.45, T:0.28
Consensus pattern (17 bp):
TGTGGGCCCAATGGGCT
Found at i:36368572 original size:27 final size:27
Alignment explanation
Indices: 36368542--36368680 Score: 111
Period size: 27 Copynumber: 5.1 Consensus size: 27
36368532 GGTCGTTAAG
*
36368542 ACCCCTGCTTTGTAAAATTACTGAAAT
1 ACCCCTGATTTGTAAAATTACTGAAAT
* * * *
36368569 ACCCCCGATTTGTAAAAGTATTAAAAT
1 ACCCCTGATTTGTAAAATTACTGAAAT
* ** **
36368596 ACCCCCGGGTTGTAAAATTACCAAAAT
1 ACCCCTGATTTGTAAAATTACTGAAAT
* *
36368623 A-CCCTCGATTTGTGAAATTACCGAAAT
1 ACCCCT-GATTTGTAAAATTACTGAAAT
** *
36368650 ACCCCTG-TAGGGTAAGATTACTGAAAT
1 ACCCCTGAT-TTGTAAAATTACTGAAAT
36368677 ACCC
1 ACCC
36368681 TTGTAGGGTA
Statistics
Matches: 89, Mismatches: 20, Indels: 6
0.77 0.17 0.05
Matches are distributed among these distances:
26 4 0.04
27 81 0.91
28 4 0.04
ACGTcount: A:0.35, C:0.23, G:0.14, T:0.27
Consensus pattern (27 bp):
ACCCCTGATTTGTAAAATTACTGAAAT
Found at i:36368650 original size:54 final size:54
Alignment explanation
Indices: 36368551--36368654 Score: 136
Period size: 54 Copynumber: 1.9 Consensus size: 54
36368541 GACCCCTGCT
** **
36368551 TTGTAAAATTACTGAAATACCCCCGATTTGTAAAAGTATTAAAATACCCCCGGG
1 TTGTAAAATTACCAAAATACCCCCGATTTGTAAAAGTACCAAAATACCCCCGGG
* * * *
36368605 TTGTAAAATTACCAAAATACCCTCGATTTGTGAAATTACCGAAATACCCC
1 TTGTAAAATTACCAAAATACCCCCGATTTGTAAAAGTACCAAAATACCCC
36368655 TGTAGGGTAA
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
54 42 1.00
ACGTcount: A:0.38, C:0.22, G:0.12, T:0.28
Consensus pattern (54 bp):
TTGTAAAATTACCAAAATACCCCCGATTTGTAAAAGTACCAAAATACCCCCGGG
Found at i:36368685 original size:27 final size:27
Alignment explanation
Indices: 36368639--36368691 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
36368629 GATTTGTGAA
36368639 ATTACCGAAATACCCCTGTAGGGTAAG
1 ATTACCGAAATACCCCTGTAGGGTAAG
* *
36368666 ATTACTGAAATACCCTTGTAGGGTAA
1 ATTACCGAAATACCCCTGTAGGGTAA
36368692 AATGATCATT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.26
Consensus pattern (27 bp):
ATTACCGAAATACCCCTGTAGGGTAAG
Found at i:36369111 original size:22 final size:22
Alignment explanation
Indices: 36369063--36369122 Score: 66
Period size: 22 Copynumber: 2.7 Consensus size: 22
36369053 GTAATCTGAT
*
36369063 TATGGCTCTGTGCCAACCTAAG
1 TATGGCTCTGTGCCAACCTAAC
* * * *
36369085 AATGGCTCTGTGCCATCTTGAC
1 TATGGCTCTGTGCCAACCTAAC
*
36369107 TATGGCTTTGTGCCAA
1 TATGGCTCTGTGCCAA
36369123 ATGTATTTAC
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.25, G:0.23, T:0.32
Consensus pattern (22 bp):
TATGGCTCTGTGCCAACCTAAC
Found at i:36369255 original size:32 final size:32
Alignment explanation
Indices: 36369219--36369290 Score: 90
Period size: 32 Copynumber: 2.2 Consensus size: 32
36369209 TTACCGTCGC
*
36369219 TGATGGCTATGTGCCAAACATAATACAGTTAT
1 TGATGGCTATGTGCCAAACATAATACAGCTAT
* ** *
36369251 TGATGGCTTTGTGCCAATTATAATACCGCTAT
1 TGATGGCTATGTGCCAAACATAATACAGCTAT
*
36369283 TGAAGGCT
1 TGATGGCT
36369291 TAGAGCCGTA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33
Consensus pattern (32 bp):
TGATGGCTATGTGCCAAACATAATACAGCTAT
Found at i:36369854 original size:16 final size:17
Alignment explanation
Indices: 36369822--36369854 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
36369812 AAATAAGAAG
36369822 GGTTTTCAATGAAAACAT
1 GGTTTTCAA-GAAAACAT
36369840 GGTTTTCAA-AAAACA
1 GGTTTTCAAGAAAACA
36369855 CTTCAATGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.42, C:0.12, G:0.15, T:0.30
Consensus pattern (17 bp):
GGTTTTCAAGAAAACAT
Found at i:36381347 original size:54 final size:54
Alignment explanation
Indices: 36381282--36381393 Score: 138
Period size: 54 Copynumber: 2.1 Consensus size: 54
36381272 TCATACAATT
* * * *
36381282 GTGTTGTAGGCCATGTGCCAGACCGTGTAA-ATCTCTGACTT-GTGACACATGGCC
1 GTGTTGCAGGCCATGTGCCAGACCGTGCAACA-CACTGACTTAAT-ACACATGGCC
* *
36381336 GTGTTGCAGGCCATGTGCTAGGCCGTGCAACACACTGACTTAATACACATGGCC
1 GTGTTGCAGGCCATGTGCCAGACCGTGCAACACACTGACTTAATACACATGGCC
36381390 GTGT
1 GTGT
36381394 GTGGCACACA
Statistics
Matches: 50, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
54 48 0.96
55 2 0.04
ACGTcount: A:0.21, C:0.25, G:0.28, T:0.26
Consensus pattern (54 bp):
GTGTTGCAGGCCATGTGCCAGACCGTGCAACACACTGACTTAATACACATGGCC
Found at i:36391616 original size:39 final size:40
Alignment explanation
Indices: 36391488--36391709 Score: 263
Period size: 39 Copynumber: 5.6 Consensus size: 40
36391478 TATTCGAATG
* *
36391488 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GTGACT
* * * * *
36391529 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGACT
* *
36391569 ATAT-CGGGCTAAGA-CCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* *
36391607 ATATCCGGGCTAAAACCCGAA-GCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* * *
36391646 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
*
36391686 ACATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
36391710 CTTGTGCAAG
Statistics
Matches: 154, Mismatches: 22, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
37 1 0.01
38 22 0.14
39 54 0.35
40 48 0.31
41 29 0.19
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
Found at i:36391666 original size:79 final size:79
Alignment explanation
Indices: 36391488--36391745 Score: 274
Period size: 79 Copynumber: 3.3 Consensus size: 79
36391478 TATTCGAATG
* * * *
36391488 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACTATATCCGGGCTAAGACCCGAA-GC
*
36391553 ATTCGTGCGAGTTGCT
64 ATTCGTGCGAGTCGCT
* * * *
36391569 ATAT-CGGGCTAAG-ACCGAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAAACCCGAAGCAT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGCAT
* *
36391632 TTGTGCTAG-CGACT
66 TCGTGCGAGTCG-CT
* * * *
36391646 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACCACATCCGGGCTAAGACCCGAAGGCC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAA-GCA
* * *
36391711 TT-GTGCAAGTAGTT
65 TTCGTGCGAGTCGCT
*
36391725 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
36391746 ATTACTTGAG
Statistics
Matches: 149, Mismatches: 23, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
76 1 0.01
77 17 0.11
78 44 0.30
79 69 0.46
80 14 0.09
81 4 0.03
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (79 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGCAT
TCGTGCGAGTCGCT
Found at i:36391692 original size:40 final size:40
Alignment explanation
Indices: 36391488--36391745 Score: 253
Period size: 39 Copynumber: 6.5 Consensus size: 40
36391478 TATTCGAATG
*
36391488 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACT
* * * *
36391529 ATAACCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAG-TGACT
* * *
36391569 ATAT-CGGGCTAAG-ACCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
** *
36391607 ATATCCGGGCTAAAACCCGAA-GCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
36391646 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * * * *
36391686 ACATCCGGGCTAAGACCCGAAGGC-CTTGTGCAAGT-AGTT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGA-CT
*
36391725 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
36391746 ATTACTTGAG
Statistics
Matches: 180, Mismatches: 29, Indels: 19
0.79 0.13 0.08
Matches are distributed among these distances:
37 1 0.01
38 36 0.20
39 65 0.36
40 48 0.27
41 29 0.16
42 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:36398985 original size:40 final size:41
Alignment explanation
Indices: 36398891--36399115 Score: 212
Period size: 40 Copynumber: 5.6 Consensus size: 41
36398881 TATTCGAATG
* *
36398891 ATATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTCGTGCTAGGTGACT
* * * *
36398932 ATAACCGGACTAAGATCCAAAGGCATTCGTG-TGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTCGTGCT-AGGTGACT
* * * *
36398972 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GCGATT
1 ATATCCGGGCTAAGATCCGAAGGCATTCGTGCTAGGTGACT
* * * *
36399012 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTA-GCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTCGTGCTAGGTGACT
** *
36399052 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTA-GTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTCGTGCTAGGTGACT
*
36399092 ACATCCGGGCTAAGATCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
36399116 CTTGTGCAAG
Statistics
Matches: 156, Mismatches: 22, Indels: 13
0.82 0.12 0.07
Matches are distributed among these distances:
39 1 0.01
40 124 0.79
41 30 0.19
42 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.24
Consensus pattern (41 bp):
ATATCCGGGCTAAGATCCGAAGGCATTCGTGCTAGGTGACT
Found at i:36399071 original size:80 final size:80
Alignment explanation
Indices: 36398891--36399151 Score: 287
Period size: 80 Copynumber: 3.3 Consensus size: 80
36398881 TATTCGAATG
* * * *
36398891 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCAAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACTATATCCGGGCTAAGATCCGAAGGC
*
36398956 ATTCGTGTGAGTTGCT
65 ATTCGTGTGAGTCGCT
* * * * *
36398972 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAAACCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGATCCGAAGGCA
*
36399037 TTTGTGCT-AG-CGACT
66 TTCGTG-TGAGTCG-CT
* * * *
36399052 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACCACATCCGGGCTAAGATCCGAAGGCC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGATCCGAAGGCA
** * *
36399117 TT-GTGCAAGTAGTT
66 TTCGTGTGAGTCGCT
*
36399131 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
36399152 ATTACTTGAG
Statistics
Matches: 152, Mismatches: 24, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
78 14 0.09
79 13 0.09
80 92 0.61
81 33 0.22
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGATCCGAAGGCA
TTCGTGTGAGTCGCT
Found at i:36399105 original size:120 final size:120
Alignment explanation
Indices: 36398891--36399151 Score: 300
Period size: 120 Copynumber: 2.2 Consensus size: 120
36398881 TATTCGAATG
* * *
36398891 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCAAAGGC
1 ATATCCGGGCTAAATCCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCAAAGGC
* * * * *
36398956 ATTCGTGTGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGA-TT
66 ATTCATGTGAGTTGCCACATCCGGGCTAAGACCCGAAGGC-CTTGTGCAAG-GAGTT
* * * *
36399012 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTA-GCGACTATATCCGGGCTAAG-TCCCGAAGG
1 ATATCCGGGCTAAATCCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGAT-CCAAAGG
* * *
36399075 CATTTATGCT-AG-TGACCACATCCGGGCTAAGATCCGAAGGCCTTGTGCAAGTAGTT
65 CATTCATG-TGAGTTG-CCACATCCGGGCTAAGACCCGAAGGCCTTGTGCAAGGAGTT
36399131 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAATCCCGAAG
36399152 ATTACTTGAG
Statistics
Matches: 120, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
118 15 0.12
119 19 0.16
120 54 0.45
121 32 0.27
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (120 bp):
ATATCCGGGCTAAATCCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCAAAGGC
ATTCATGTGAGTTGCCACATCCGGGCTAAGACCCGAAGGCCTTGTGCAAGGAGTT
Found at i:36409463 original size:47 final size:47
Alignment explanation
Indices: 36409409--36409566 Score: 298
Period size: 47 Copynumber: 3.4 Consensus size: 47
36409399 TGCTCAAATT
36409409 ATAAGTTACTTAGTTAAGCTTGTTTAATTTGTTCTTAATATTTCCGG
1 ATAAGTTACTTAGTTAAGCTTGTTTAATTTGTTCTTAATATTTCCGG
*
36409456 ATAAGTTACTTAGTTAAGCTTGTTTAATTTGTTCTTAATATTTCTGG
1 ATAAGTTACTTAGTTAAGCTTGTTTAATTTGTTCTTAATATTTCCGG
*
36409503 ATAAGTTACTTAGTTAAGCATGTTTAATTTGTTCTTAATATTTCCGG
1 ATAAGTTACTTAGTTAAGCTTGTTTAATTTGTTCTTAATATTTCCGG
36409550 ATAAGTTACTTAGTTAA
1 ATAAGTTACTTAGTTAA
36409567 AGAAAATTTT
Statistics
Matches: 108, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 108 1.00
ACGTcount: A:0.28, C:0.09, G:0.15, T:0.48
Consensus pattern (47 bp):
ATAAGTTACTTAGTTAAGCTTGTTTAATTTGTTCTTAATATTTCCGG
Found at i:36412572 original size:46 final size:46
Alignment explanation
Indices: 36412414--36412588 Score: 158
Period size: 46 Copynumber: 3.8 Consensus size: 46
36412404 GTGTGCTATA
** * * *
36412414 GTAAGACATGTCTAGGACATATATTGGCCA-C-ATTACGAGAGCTAGT
1 GTAAGACATGTCTAGGACATGCATCGG-CATCGA-GACGAGAGCAAGT
* *
36412460 GTAAGACATGTCTAGGACATGCATCGGCCTCGAGA-GATGCAAGCCAGT
1 GTAAGACATGTCTAGGACATGCATCGGCATCGAGACGA-G--AGCAAGT
* * * * *
36412508 GTAAGATATGTTTAGGACATTCATTGGCATTGAGACGAGAGCAAGT
1 GTAAGACATGTCTAGGACATGCATCGGCATCGAGACGAGAGCAAGT
* *
36412554 GTAAGACATGTCTGGGACATGCATCGGCTTCGAGA
1 GTAAGACATGTCTAGGACATGCATCGGCATCGAGA
36412589 TATACAAGTT
Statistics
Matches: 103, Mismatches: 20, Indels: 12
0.76 0.15 0.09
Matches are distributed among these distances:
45 3 0.03
46 61 0.59
47 1 0.01
48 36 0.35
49 2 0.02
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.24
Consensus pattern (46 bp):
GTAAGACATGTCTAGGACATGCATCGGCATCGAGACGAGAGCAAGT
Found at i:36412605 original size:48 final size:47
Alignment explanation
Indices: 36412453--36412605 Score: 148
Period size: 48 Copynumber: 3.2 Consensus size: 47
36412443 ACATTACGAG
* *
36412453 AGCTAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGAGATGCA
1 AGCTAGTGTAAGACATGTCTAGGACATGCATCGGCTTCGAGA-ATACA
* * * * * ** *
36412501 AGCCAGTGTAAGATATGTTTAGGACATTCATTGGCATT-GAGACGA-G
1 AGCTAGTGTAAGACATGTCTAGGACATGCATCGGC-TTCGAGAATACA
* *
36412547 AGCAAGTGTAAGACATGTCTGGGACATGCATCGGCTTCGAGATATACA
1 AGCTAGTGTAAGACATGTCTAGGACATGCATCGGCTTCGAGA-ATACA
*
36412595 AGTTAGTGTAA
1 AGCTAGTGTAA
36412606 AACTTATCTG
Statistics
Matches: 80, Mismatches: 21, Indels: 8
0.73 0.19 0.07
Matches are distributed among these distances:
45 2 0.03
46 33 0.41
47 1 0.01
48 43 0.54
49 1 0.01
ACGTcount: A:0.31, C:0.16, G:0.28, T:0.25
Consensus pattern (47 bp):
AGCTAGTGTAAGACATGTCTAGGACATGCATCGGCTTCGAGAATACA
Found at i:36412620 original size:94 final size:94
Alignment explanation
Indices: 36412448--36412621 Score: 233
Period size: 94 Copynumber: 1.9 Consensus size: 94
36412438 TGGCCACATT
* * *
36412448 ACGAGAGCTAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGAGATGCAAGCCAGTGTAAG
1 ACGAGAGCAAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGAGATACAAGCCAGTGTAAA
* *
36412513 ATATGTTTAGGACATTCATTGGCATTGAG
66 ATATATCTAGGACATTCATTGGCATTGAG
* * * **
36412542 ACGAGAGCAAGTGTAAGACATGTCTGGGACATGCATCGGCTTCGAGATATACAAGTTAGTGTAAA
1 ACGAGAGCAAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGAGATACAAGCCAGTGTAAA
*
36412607 ACT-TATCTGGGACAT
66 A-TATATCTAGGACAT
36412622 GGCGTCAGGT
Statistics
Matches: 68, Mismatches: 11, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
94 67 0.99
95 1 0.01
ACGTcount: A:0.31, C:0.17, G:0.28, T:0.25
Consensus pattern (94 bp):
ACGAGAGCAAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGAGATACAAGCCAGTGTAAA
ATATATCTAGGACATTCATTGGCATTGAG
Found at i:36417448 original size:18 final size:18
Alignment explanation
Indices: 36417415--36417450 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
36417405 GAGATTGTTG
*
36417415 GAGTTGATAAAGGACTAC
1 GAGTTGATAAACGACTAC
*
36417433 GAGTTGATAATCGACTAC
1 GAGTTGATAAACGACTAC
36417451 CACCCAGGAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.36, C:0.14, G:0.25, T:0.25
Consensus pattern (18 bp):
GAGTTGATAAACGACTAC
Found at i:36420135 original size:46 final size:47
Alignment explanation
Indices: 36420082--36420205 Score: 166
Period size: 46 Copynumber: 2.7 Consensus size: 47
36420072 TATGTGTGCT
36420082 AGTGTAAGACATGTTTGGGACATGCATCGGCCACATT-ACGAGAGCC
1 AGTGTAAGACATGTTTGGGACATGCATCGGCCACATTGACGAGAGCC
* *
36420128 AGTGTAAGACATGTCTGGGACATGCATC-G--ACATTGAGACGAGAGCT
1 AGTGTAAGACATGTTTGGGACATGCATCGGCCACATT--GACGAGAGCC
* *
36420174 AGTGTAAGAAATGTTCGGGACATGCATCGGCC
1 AGTGTAAGACATGTTTGGGACATGCATCGGCC
36420206 TCGAGATATA
Statistics
Matches: 67, Mismatches: 5, Indels: 9
0.83 0.06 0.11
Matches are distributed among these distances:
43 5 0.07
45 1 0.01
46 60 0.90
47 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.30, T:0.22
Consensus pattern (47 bp):
AGTGTAAGACATGTTTGGGACATGCATCGGCCACATTGACGAGAGCC
Found at i:36420323 original size:48 final size:49
Alignment explanation
Indices: 36420268--36420390 Score: 151
Period size: 49 Copynumber: 2.5 Consensus size: 49
36420258 TGTGTGTCAA
*
36420268 TGTAAGACCTGTCT-GCACATGGCATC-GACACCGATAGATGAAAGCCAG
1 TGTAAGACCTGTCTGGGACATGGCATCAGAC-CCGATAGATGAAAGCCAG
** * * * *
36420316 TGTAAGACCTGTCTGGGACACAGCATCAGGCTCGATATATGAAAGTCAG
1 TGTAAGACCTGTCTGGGACATGGCATCAGACCCGATAGATGAAAGCCAG
*
36420365 TGTAAGACTTGTCTGGGACATGGCAT
1 TGTAAGACCTGTCTGGGACATGGCAT
36420391 TGACTTTGAT
Statistics
Matches: 63, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
48 14 0.22
49 47 0.75
50 2 0.03
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.23
Consensus pattern (49 bp):
TGTAAGACCTGTCTGGGACATGGCATCAGACCCGATAGATGAAAGCCAG
Found at i:36426515 original size:25 final size:26
Alignment explanation
Indices: 36426466--36426515 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
36426456 GAGGTAAGTT
*
36426466 TGTATGTTAAATAAGCTTTACTTTAAA
1 TGTATGTTAAAT-AGCTTTAATTTAAA
*
36426493 TGTATTTTAAAT-GCTTTAATTTA
1 TGTATGTTAAATAGCTTTAATTTA
36426516 TGCATGATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 10 0.48
27 11 0.52
ACGTcount: A:0.34, C:0.06, G:0.10, T:0.50
Consensus pattern (26 bp):
TGTATGTTAAATAGCTTTAATTTAAA
Found at i:36437663 original size:29 final size:29
Alignment explanation
Indices: 36437630--36437694 Score: 112
Period size: 29 Copynumber: 2.2 Consensus size: 29
36437620 ATGTCTAAGC
*
36437630 CATGTGTGACACACGGCTTGCCCCATGGG
1 CATGTGTGAAACACGGCTTGCCCCATGGG
*
36437659 CATGTGTGAAACACGGCTTGCCTCATGGG
1 CATGTGTGAAACACGGCTTGCCCCATGGG
36437688 CATGTGT
1 CATGTGT
36437695 TTTGGCCGTG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.18, C:0.26, G:0.31, T:0.25
Consensus pattern (29 bp):
CATGTGTGAAACACGGCTTGCCCCATGGG
Found at i:36440878 original size:42 final size:42
Alignment explanation
Indices: 36440819--36440913 Score: 147
Period size: 42 Copynumber: 2.3 Consensus size: 42
36440809 GAGACTATGC
36440819 GTAAGACCATATCTGGGAAATGGCATCAATATGA-ATTTTCGT
1 GTAAGACCATATCTGGGAAATGGCATCAATATGAGA-TTTCGT
* * *
36440861 GTAAGACCATATCTGGGATATGGTATCGATATGAGATTTCGT
1 GTAAGACCATATCTGGGAAATGGCATCAATATGAGATTTCGT
36440903 GTAAGACCATA
1 GTAAGACCATA
36440914 GTTGGGCTAT
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
42 48 0.98
43 1 0.02
ACGTcount: A:0.33, C:0.14, G:0.23, T:0.31
Consensus pattern (42 bp):
GTAAGACCATATCTGGGAAATGGCATCAATATGAGATTTCGT
Found at i:36450188 original size:27 final size:27
Alignment explanation
Indices: 36450123--36450200 Score: 88
Period size: 27 Copynumber: 2.8 Consensus size: 27
36450113 GCTCATCTAT
36450123 ACTTATTTGATGTATATGTGAATTATGTG
1 ACTTATTTGA-GTATATGTG-ATTATGTG
* *
36450152 ACTAACTTGAGTATATGTGATTAACT-TG
1 ACTTATTTGAGTATATGTGATT-A-TGTG
36450180 -CTTATTTGAGTATATGTGATT
1 ACTTATTTGAGTATATGTGATT
36450201 GGGCAAATTT
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
27 22 0.51
28 12 0.28
29 9 0.21
ACGTcount: A:0.28, C:0.06, G:0.19, T:0.46
Consensus pattern (27 bp):
ACTTATTTGAGTATATGTGATTATGTG
Found at i:36450730 original size:21 final size:21
Alignment explanation
Indices: 36450703--36450755 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
36450693 CTGCCTATAG
* **
36450703 CACGGGCGTGTCCTATGGTCA
1 CACGGGCGTGTCCCATGACCA
*
36450724 CCCGGGCGTGTCCCATGACCA
1 CACGGGCGTGTCCCATGACCA
36450745 CACGGGCGTGT
1 CACGGGCGTGT
36450756 GTGCCTTGCA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.13, C:0.34, G:0.34, T:0.19
Consensus pattern (21 bp):
CACGGGCGTGTCCCATGACCA
Found at i:36452958 original size:26 final size:26
Alignment explanation
Indices: 36452921--36452974 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
36452911 GTCTGAGTCT
*
36452921 GAGTCATGTTAATAGTGAGTTAAAAA
1 GAGTCATCTTAATAGTGAGTTAAAAA
*
36452947 GAGTCATCTTAATATTGAGTTAAAAA
1 GAGTCATCTTAATAGTGAGTTAAAAA
36452973 GA
1 GA
36452975 TAAAACGAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.43, C:0.06, G:0.20, T:0.31
Consensus pattern (26 bp):
GAGTCATCTTAATAGTGAGTTAAAAA
Found at i:36462673 original size:32 final size:32
Alignment explanation
Indices: 36462632--36462695 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
36462622 CTGGATTTCT
36462632 TCCCCTTTTATCAAATATATCAATGTTAATGA
1 TCCCCTTTTATCAAATATATCAATGTTAATGA
36462664 TCCCCTTTTATCAAATATATCAATGTTAATGA
1 TCCCCTTTTATCAAATATATCAATGTTAATGA
36462696 ACATTCAAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.34, C:0.19, G:0.06, T:0.41
Consensus pattern (32 bp):
TCCCCTTTTATCAAATATATCAATGTTAATGA
Found at i:36465983 original size:47 final size:46
Alignment explanation
Indices: 36465917--36466227 Score: 153
Period size: 47 Copynumber: 6.6 Consensus size: 46
36465907 GGTGAGAGCC
36465917 AGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAGATGAAGGCT
1 AGTGTAAGACCATGTCTGGGACAT-GCATCAGCATT-AGATGAAGGCT
*
36465965 AGTGTAAGA-CATGTCTGGGACATGCATTAGCCACATT--ATGATA-GCT
1 AGTGTAAGACCATGTCTGGGACATGCATCAG---CATTAGATGA-AGGCT
* * *
36466011 AGTGTAAGACCATGTTTGGGACATGGCATCAGC-TTAAAGA-GGAGTGCC
1 AGTGTAAGACCATGTCTGGGACAT-GCATCAGCATT--AGATGAAG-GCT
* * * * * *
36466059 AATGTAGGA-CATGTCTGGGACATGCATCGGCCTCAACGATGATA-GCC
1 AGTGTAAGACCATGTCTGGGACATGCATCAGCAT-TA-GATGA-AGGCT
* * * * ** *
36466106 AGTGTAAGA-CGTGCCTGGGACATGCAT-AGGC-TAAGCTTCATGCT
1 AGTGTAAGACCATGTCTGGGACATGCATCA-GCATTAGATGAAGGCT
* * * * *
36466150 AGTGTAAGA-CATGTTTAGAACATGCATCAGCACGTATACACG-AGAGCT
1 AGTGTAAGACCATGTCTGGGACATGCATCAGCA--T-TAGATGAAG-GCT
*
36466198 AGTATAAGACCATGTCTGGGACATGGCATC
1 AGTGTAAGACCATGTCTGGGACAT-GCATC
36466228 GACAACTTAA
Statistics
Matches: 201, Mismatches: 35, Indels: 52
0.70 0.12 0.18
Matches are distributed among these distances:
43 1 0.00
44 30 0.15
45 4 0.02
46 32 0.16
47 75 0.37
48 38 0.19
49 16 0.08
50 5 0.02
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACCATGTCTGGGACATGCATCAGCATTAGATGAAGGCT
Found at i:36466125 original size:94 final size:94
Alignment explanation
Indices: 36465913--36466129 Score: 260
Period size: 94 Copynumber: 2.3 Consensus size: 94
36465903 ATTAGGTGAG
* * *
36465913 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAGATGAAGGCTAGTGTAAGACATG
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTAAGATGAAGGCCAATGTAAGACATG
* **
36465978 TCTGGGACATGCATTAGCCACATTATGAT
66 TCTGGGACATGCATCAGCCACACGATGAT
* * * *
36466007 AGCTAGTGTAAGACCATGTTTGGGACATGGCATCAGC-TTAAAGA-GGAGTGCCAATGTAGGACA
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCATT-AAGATGAAG-GCCAATGTAAGACA
* *
36466070 TGTCTGGGACATGCATCGGCCTCAACGATGAT
64 TGTCTGGGACATGCATCAGCCAC-ACGATGAT
* *
36466102 AGCCAGTGTAAGA-CGTGCCTGGGACATG
1 AGCCAGTGTAAGACCATGTCTGGGACATG
36466130 CATAGGCTAA
Statistics
Matches: 104, Mismatches: 16, Indels: 6
0.83 0.13 0.05
Matches are distributed among these distances:
93 5 0.05
94 81 0.78
95 18 0.17
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (94 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTAAGATGAAGGCCAATGTAAGACATG
TCTGGGACATGCATCAGCCACACGATGAT
Found at i:36467107 original size:54 final size:55
Alignment explanation
Indices: 36466990--36467107 Score: 150
Period size: 55 Copynumber: 2.2 Consensus size: 55
36466980 CTTAAACTTT
* *
36466990 TAAGTCAGTATTGTCCACGGGTAGGCCACACAGGAGTGTGCCATAGCCGTGTCTC
1 TAAGTCAGTATTGTCCACGGGCAGGCCACACAGGAGTGTGCCATAGCCGTGTCCC
* * * * *
36467045 TAAGTCAGTATTGTCTACGGGCAGGCCACA-GGGTGTGTGTCATGGCCGTG-CCC
1 TAAGTCAGTATTGTCCACGGGCAGGCCACACAGGAGTGTGCCATAGCCGTGTCCC
36467098 TAATGTCAGT
1 TAA-GTCAGT
36467108 GTTACACACG
Statistics
Matches: 55, Mismatches: 7, Indels: 3
0.85 0.11 0.05
Matches are distributed among these distances:
53 5 0.09
54 22 0.40
55 28 0.51
ACGTcount: A:0.20, C:0.24, G:0.31, T:0.25
Consensus pattern (55 bp):
TAAGTCAGTATTGTCCACGGGCAGGCCACACAGGAGTGTGCCATAGCCGTGTCCC
Found at i:36468512 original size:47 final size:47
Alignment explanation
Indices: 36468434--36468805 Score: 195
Period size: 47 Copynumber: 7.9 Consensus size: 47
36468424 TTGAATTATG
36468434 CGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAGA
1 CGAGAGCCAGTGTAAGACCATGTCTGGGACAT-GCATCAGCATTGAGA
* * * * **
36468482 CGAGGGCTAGTGTAAGA-CATGTCTGGGACATGCATCAACCA-CGTTA
1 CGAGAGCCAGTGTAAGACCATGTCTGGGACATGCATC-AGCATTGAGA
* * * * ** *
36468528 TGATAGTCAGTGTAAGACCATGTCTGGGACATGGCATTAGTGTAGAGA
1 CGAGAGCCAGTGTAAGACCATGTCTGGGACAT-GCATCAGCATTGAGA
* * * * ** * * *
36468576 GGAGTGCCAATGTGAGA-CATGTCTAAGACATGCATCGGCCTCGACGA
1 CGAGAGCCAGTGTAAGACCATGTCTGGGACATGCATCAGCATTGA-GA
* * * * *
36468623 TGATAGCCAGTGTAAGA-CGTGTCTGGGACATGCATC-G-AGTAAG-
1 CGAGAGCCAGTGTAAGACCATGTCTGGGACATGCATCAGCATTGAGA
** * * *
36468666 CTTCGTGCTAGTGTAAGA-CATGTCTGGGACATGCATCAGCACGTATG-CA
1 C-GAGAGCCAGTGTAAGACCATGTCTGGGACATGCATCAGCA--T-TGAGA
* *** * * * *
36468715 TGAGAATTAGTGTAAAACCATGTCTGGGACATGGCATCGGCCTCGATGA
1 CGAGAGCCAGTGTAAGACCATGTCTGGGACAT-GCATCAGCATTGA-GA
* * *
36468764 AGATAGCCAGTGTAAGACCATGTCTAGGACATGGCATCAGCA
1 CGAGAGCCAGTGTAAGACCATGTCTGGGACAT-GCATCAGCA
36468806 ACTTAACCCA
Statistics
Matches: 235, Mismatches: 73, Indels: 31
0.69 0.22 0.09
Matches are distributed among these distances:
44 30 0.13
45 2 0.01
46 29 0.12
47 75 0.32
48 43 0.18
49 49 0.21
50 7 0.03
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (47 bp):
CGAGAGCCAGTGTAAGACCATGTCTGGGACATGCATCAGCATTGAGA
Found at i:36468560 original size:94 final size:93
Alignment explanation
Indices: 36468441--36468802 Score: 299
Period size: 94 Copynumber: 3.8 Consensus size: 93
36468431 ATGCGAGAGC
* *
36468441 CAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAGACGAGGGCTAGTGTAAGACATGTCT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAGACGAGTGCCAGTGTAAGACATGTCT
*
36468506 GGGACATGCATCAACCACGTTATGATAGT
66 AGGACATGCATCAACCACG-TATGATAGT
* ** * * * *
36468535 CAGTGTAAGACCATGTCTGGGACATGGCATTAGTGTAGAGAGGAGTGCCAATGTGAGACATGTCT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAGACGAGTGCCAGTGTAAGACATGTCT
* ** *
36468600 AAGACATGCATCGGCCTCGACG-ATGATAGC
66 AGGACATGCATC-AAC-C-ACGTATGATAGT
* * * ** *
36468630 CAGTGTAAGA-CGTGTCTGGGACAT-GCATC-G-AGTAAG-CTTCGTGCTAGTGTAAGACATGTC
1 CAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAGAC-GAGTGCCAGTGTAAGACATGTC
* *
36468690 TGGGACATGCATC-AGCACGTATGCATGAGAAT
65 TAGGACATGCATCAACCACGTATG-AT-AG--T
* * * * * *
36468722 TAGTGTAAAACCATGTCTGGGACATGGCATCGGCCTCGATGAAGA-TAGCCAGTGTAAGACCATG
1 CAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGA-GACGAGT-GCCAGTGTAAGA-CATG
36468786 TCTAGGACATGGCATCA
63 TCTAGGACAT-GCATCA
36468803 GCAACTTAAC
Statistics
Matches: 206, Mismatches: 43, Indels: 32
0.73 0.15 0.11
Matches are distributed among these distances:
87 3 0.01
88 4 0.02
89 2 0.01
90 2 0.01
91 30 0.15
92 9 0.04
93 17 0.08
94 84 0.41
95 19 0.09
96 3 0.01
97 15 0.07
98 13 0.06
99 5 0.02
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.23
Consensus pattern (93 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAGACGAGTGCCAGTGTAAGACATGTCT
AGGACATGCATCAACCACGTATGATAGT
Found at i:36483629 original size:37 final size:37
Alignment explanation
Indices: 36483529--36483631 Score: 170
Period size: 37 Copynumber: 2.8 Consensus size: 37
36483519 CGAATAGTCC
* *
36483529 CCACACGTAGTTATCGGGTCTTACCCAGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
* *
36483566 CCACACGTAGTCATCGAGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
36483603 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
36483632 ATATATTTCC
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 61 1.00
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.23
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:36483830 original size:48 final size:48
Alignment explanation
Indices: 36483772--36484239 Score: 780
Period size: 48 Copynumber: 9.8 Consensus size: 48
36483762 ATGTACACAC
*
36483772 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
36483820 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
36483868 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
36483916 ATCTCATACATATTTCACACTAGCCATTTGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
36483964 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
36484012 ATCTGATACATATTT--CAC-AGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * * *
36484057 ATCTCATATATATTTGACATTAGCCATTCAGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
36484105 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACACATATACGT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTA-C-CACATATACAT
36484155 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
36484203 ATCTCATACATATTTCACACTAGTCATTCGGCTTTAC
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTAC
36484240 AACACACATA
Statistics
Matches: 392, Mismatches: 23, Indels: 10
0.92 0.05 0.02
Matches are distributed among these distances:
45 40 0.10
46 2 0.01
47 2 0.01
48 300 0.77
49 2 0.01
50 46 0.12
ACGTcount: A:0.31, C:0.27, G:0.07, T:0.35
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:36484055 original size:237 final size:241
Alignment explanation
Indices: 36483778--36484239 Score: 788
Period size: 237 Copynumber: 1.9 Consensus size: 241
36483768 ACACATCTCC
36483778 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAG
1 TACATATTT-ACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAG
* * *
36483843 CCATTCGGCTTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCGGCTTTA-C-C
65 CCATTCAGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC
*
36483906 ACATATACATATCTCATACATATTTCACACTAGCCATTTGGCTTTACCACATATACATATCTCAT
130 ACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAT
* *
36483971 ATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTGA
195 ACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTGA
* * *
36484018 TACATATTT-CAC-AGCCATTCGGCTTTACCACATATACATATCTCATATATATTTGACATTAGC
1 TACATATTTACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGC
36484081 CATTCAGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACA
66 CATTCAGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACA
*
36484146 CATATACGTATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
131 CATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
*
36484211 CATATTTCACACTAGTCATTCGGCTTTAC
196 CATATTTCACACTAGCCATTCGGCTTTAC
36484240 AACACACATA
Statistics
Matches: 209, Mismatches: 11, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
237 105 0.50
238 4 0.02
239 91 0.44
240 9 0.04
ACGTcount: A:0.31, C:0.27, G:0.07, T:0.35
Consensus pattern (241 bp):
TACATATTTACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGC
CATTCAGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACA
CATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
CATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTGA
Found at i:36487567 original size:23 final size:23
Alignment explanation
Indices: 36487541--36487587 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
36487531 CATTCTGTTG
*
36487541 TCATACCCATGCCATTACTATGC
1 TCATACCCATGCCATTACCATGC
* * *
36487564 TCATTCTCATGCTATTACCATGC
1 TCATACCCATGCCATTACCATGC
36487587 T
1 T
36487588 AATGTCACAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.23, C:0.32, G:0.09, T:0.36
Consensus pattern (23 bp):
TCATACCCATGCCATTACCATGC
Found at i:36490520 original size:24 final size:26
Alignment explanation
Indices: 36490468--36490520 Score: 65
Period size: 27 Copynumber: 2.1 Consensus size: 26
36490458 TTTCGATAGA
*
36490468 GATTATAAGTTGAGAATAATTTATTTT
1 GATTATAAGTTGAGAAT-ATTTATCTT
*
36490495 GATTATGAGTTGAGAAT-TTT-TCTT
1 GATTATAAGTTGAGAATATTTATCTT
36490519 GA
1 GA
36490521 GGACAAGAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 5 0.21
25 3 0.12
27 16 0.67
ACGTcount: A:0.32, C:0.02, G:0.19, T:0.47
Consensus pattern (26 bp):
GATTATAAGTTGAGAATATTTATCTT
Found at i:36507758 original size:6 final size:6
Alignment explanation
Indices: 36507740--36507859 Score: 59
Period size: 6 Copynumber: 19.3 Consensus size: 6
36507730 AGGAAACATT
* * *
36507740 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATTAG- GTGAGAAA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAG--A ATCAGA
* * * * *
36507789 ATCAAA ATCAGT ATCAGGTA A-CAGA ATTAAA ATCAGA ATCAGT ATCAAGTA
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATC-AG-A
*
36507840 A-CAGA ATCAAAA ATCAGA AT
1 ATCAGA ATC-AGA ATCAGA AT
36507860 GTGAATGCAA
Statistics
Matches: 85, Mismatches: 17, Indels: 24
0.67 0.13 0.19
Matches are distributed among these distances:
5 8 0.09
6 60 0.71
7 12 0.14
8 5 0.06
ACGTcount: A:0.51, C:0.13, G:0.16, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:36507823 original size:31 final size:31
Alignment explanation
Indices: 36507782--36507851 Score: 104
Period size: 31 Copynumber: 2.3 Consensus size: 31
36507772 TAGGTGAGAA
* *
36507782 AATCAGAATCAAAATCAGTATCAGGTAACAG
1 AATCAAAATCAAAATCAGTATCAAGTAACAG
* *
36507813 AATTAAAATCAGAATCAGTATCAAGTAACAG
1 AATCAAAATCAAAATCAGTATCAAGTAACAG
36507844 AATCAAAA
1 AATCAAAA
36507852 ATCAGAATGT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.53, C:0.14, G:0.13, T:0.20
Consensus pattern (31 bp):
AATCAAAATCAAAATCAGTATCAAGTAACAG
Found at i:36508044 original size:27 final size:26
Alignment explanation
Indices: 36507996--36508055 Score: 68
Period size: 27 Copynumber: 2.3 Consensus size: 26
36507986 GCTTAGTTAT
* *
36507996 CAGATATTGTGACAGAGTCACCAGATA
1 CAGATATTGTGACAGAGCCACCA-AAA
*
36508023 CAGATATTGTGGCTAG-GCCACCAAAA
1 CAGATATTGTGAC-AGAGCCACCAAAA
36508049 CAGATAT
1 CAGATAT
36508056 ATATATGTGG
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
26 9 0.31
27 18 0.62
28 2 0.07
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACAGAGCCACCAAAA
Found at i:36508142 original size:27 final size:26
Alignment explanation
Indices: 36508094--36508145 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
36508084 GCGAGGCTGC
*
36508094 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
36508120 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
36508146 TTGCAGCAAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:36508439 original size:27 final size:27
Alignment explanation
Indices: 36508390--36508637 Score: 275
Period size: 27 Copynumber: 9.3 Consensus size: 27
36508380 GGGGTAAAAT
* * * *
36508390 GGTAATTTTACCCCACAAAGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
36508417 GGTAATTCTATCCTACAGGGGTATTT-
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
36508443 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
36508470 GATATTTCAACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
36508497 TGTAATTCTACCCTACAAGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * *
36508524 AGTAACTCTACCCTATAGGGGTATTT-
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
36508550 GGTATTTCTATCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
36508577 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
36508604 GGTATTTTTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
36508631 GGTAATT
1 GGTAATT
36508638 TTGTAAATCG
Statistics
Matches: 188, Mismatches: 31, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
26 45 0.24
27 143 0.76
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.37
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:36508513 original size:80 final size:80
Alignment explanation
Indices: 36508399--36508631 Score: 288
Period size: 80 Copynumber: 2.9 Consensus size: 80
36508389 TGGTAATTTT
* * * * *
36508399 ACCCCACAAAGGTATCTCGGTAATTCTATCCTACAGGGGTATTTAGTAATTCTACCCTACAGGGG
1 ACCCTACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTAGTAATTCTACCCTACAGGGG
36508464 TATTTCGATATTTCA
66 TATTTCGATATTTCA
* * *
36508479 ACCCTACAAGGGTATTTCTGTAATTCTACCCTACAAGGGTATTTTAGTAACTCTACCCTATAGGG
1 ACCCTACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTA-TTTAGTAATTCTACCCTACAGGG
* *
36508544 GTATTT-GGTATTTCT
65 GTATTTCGATATTTCA
* * * * * * *
36508559 ATCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGGTATTTTTACCCTACAAGG
1 ACCCTACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTT-AGTAATTCTACCCTACAGGG
36508624 GTATTTCG
65 GTATTTCG
36508632 GTAATTTTGT
Statistics
Matches: 130, Mismatches: 20, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
79 3 0.02
80 99 0.76
81 28 0.22
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.36
Consensus pattern (80 bp):
ACCCTACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTAGTAATTCTACCCTACAGGGG
TATTTCGATATTTCA
Found at i:36508567 original size:107 final size:107
Alignment explanation
Indices: 36508390--36508635 Score: 339
Period size: 107 Copynumber: 2.3 Consensus size: 107
36508380 GGGGTAAAAT
* * * * * *
36508390 GGTAATTTTACCCCACAAAGGTATCTCGGTAATTCTATCCTACAGGGGTATTTAGTAATTCTACC
1 GGTAATTTTACCCTACAAGGGTATTTCAGTAACTCTACCCTACAGGGGTATTTAGTAATTCTACC
36508455 CTACAGGGGTATTTCGATATTTCAACCCTACAAGGGTATTTC
66 CTACAGGGGTATTTCGATATTTCAACCCTACAAGGGTATTTC
* * * * * * *
36508497 TGTAATTCTACCCTACAAGGGTATTTTAGTAACTCTACCCTATAGGGGTATTTGGTATTTCTATC
1 GGTAATTTTACCCTACAAGGGTATTTCAGTAACTCTACCCTACAGGGGTATTTAGTAATTCTACC
* *
36508562 CTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTC
66 CTACAGGGGTATTTCGATATTTCAACCCTACAAGGGTATTTC
* *
36508604 GGTATTTTTACCCTACAAGGGTATTTCGGTAA
1 GGTAATTTTACCCTACAAGGGTATTTCAGTAA
36508636 TTTTGTAAAT
Statistics
Matches: 119, Mismatches: 20, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
107 119 1.00
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.36
Consensus pattern (107 bp):
GGTAATTTTACCCTACAAGGGTATTTCAGTAACTCTACCCTACAGGGGTATTTAGTAATTCTACC
CTACAGGGGTATTTCGATATTTCAACCCTACAAGGGTATTTC
Found at i:36508651 original size:27 final size:26
Alignment explanation
Indices: 36508591--36509125 Score: 467
Period size: 27 Copynumber: 19.8 Consensus size: 26
36508581 TTTCTACCCT
* * **
36508591 ACAAGGGTATTTCGGTATTTTTACCCT
1 ACAAGGGTATTTTGGTAATTTTA-CAA
* **
36508618 ACAAGGGTATTTCGGTAATTTTGTAA
1 ACAAGGGTATTTTGGTAATTTTACAA
* **** * *
36508644 ATCGAGGGTAAAACGGTAATTCTATAA
1 A-CAAGGGTATTTTGGTAATTTTACAA
** *
36508671 ATTAGGGGTACTTTGGTAATTTTACAA
1 ACAAG-GGTATTTTGGTAATTTTACAA
* * *** *
36508698 GTCGAGGGTATTTCAATAATTTTACAGG
1 -ACAAGGGTATTTTGGTAATTTTACA-A
* * ** *
36508726 TCGAGGGTATTTCAGTAATTTCACAA
1 ACAAGGGTATTTTGGTAATTTTACAA
* *
36508752 ATTAGGGGTATTTTGGTAATTTTACAA
1 A-CAAGGGTATTTTGGTAATTTTACAA
* *
36508779 ACTAGGGGTATTTTGATAATTTTACAA
1 AC-AAGGGTATTTTGGTAATTTTACAA
*
36508806 ACCAAGGGTATTTTGGTACTTTTACAA
1 A-CAAGGGTATTTTGGTAATTTTACAA
*
36508833 ACCAGGGGTATTTTGGTAATTTTACAA
1 A-CAAGGGTATTTTGGTAATTTTACAA
*
36508860 ACCAGGGGTATTTTGGTAATTTTACAA
1 A-CAAGGGTATTTTGGTAATTTTACAA
*
36508887 ACCAGGGGTATTTTGGTAATTTTACAA
1 A-CAAGGGTATTTTGGTAATTTTACAA
36508914 ACCAAGGGTATTTTGGTAATTTTACAA
1 A-CAAGGGTATTTTGGTAATTTTACAA
* *
36508941 ACCAGGGGTATTTTGGTAATTTTATAA
1 A-CAAGGGTATTTTGGTAATTTTACAA
*
36508968 ACAAAGGGTATTTTAGTAATTTTACAA
1 AC-AAGGGTATTTTGGTAATTTTACAA
**
36508995 ACCAAGGGTATTTTGGTAATTTTGTAA
1 A-CAAGGGTATTTTGGTAATTTTACAA
* *
36509022 GCCAAGGGTATTTTGGTAATTTCACAA
1 -ACAAGGGTATTTTGGTAATTTTACAA
* *
36509049 ACTAGGGGTATTTTGGTAATTTTATAA
1 AC-AAGGGTATTTTGGTAATTTTACAA
* *
36509076 ACAAAGAGTATTTTAGTAATTTTACAA
1 AC-AAGGGTATTTTGGTAATTTTACAA
*
36509103 ACCAGGGGTATTTTGGTAATTTT
1 A-CAAGGGTATTTTGGTAATTTT
36509126 GTAAACTAAA
Statistics
Matches: 427, Mismatches: 69, Indels: 24
0.82 0.13 0.05
Matches are distributed among these distances:
26 5 0.01
27 417 0.98
28 5 0.01
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.38
Consensus pattern (26 bp):
ACAAGGGTATTTTGGTAATTTTACAA
Found at i:36508653 original size:54 final size:53
Alignment explanation
Indices: 36508389--36508634 Score: 190
Period size: 53 Copynumber: 4.6 Consensus size: 53
36508379 CGGGGTAAAA
* * * * * *
36508389 TGGTAATTT-TACCCCACAAAGGTATCTCGGTAATTCTATC-CTACAGGGGTATT
1 TGGT-ATTTCTACCCTACAAGGGTATTTCGGTATTTCTA-CAATACAAGGGTATT
* * * * * **
36508442 TAGTAATTCTACCCTACAGGGGTATTTCGATATTTCAACCCTACAAGGGTATT
1 TGGTATTTCTACCCTACAAGGGTATTTCGGTATTTCTACAATACAAGGGTATT
* * ** ** ** * *
36508495 TCTGTAATTCTACCCTACAAGGGTATTTTAGTAACTCTACCCTATAGGGGTATT
1 T-GGTATTTCTACCCTACAAGGGTATTTCGGTATTTCTACAATACAAGGGTATT
* * **
36508549 TGGTATTTCTATCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATT
1 TGGTATTTCTACCCTACAAGGGTATTTCGGTATTTCTACAATACAAGGGTATT
*
36508602 TCGGTATTTTTACCCTACAAGGGTATTTCGGTA
1 T-GGTATTTCTACCCTACAAGGGTATTTCGGTA
36508635 ATTTTGTAAA
Statistics
Matches: 156, Mismatches: 33, Indels: 7
0.80 0.17 0.04
Matches are distributed among these distances:
52 4 0.03
53 81 0.52
54 71 0.46
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.37
Consensus pattern (53 bp):
TGGTATTTCTACCCTACAAGGGTATTTCGGTATTTCTACAATACAAGGGTATT
Found at i:36509131 original size:27 final size:27
Alignment explanation
Indices: 36508730--36509125 Score: 558
Period size: 27 Copynumber: 14.7 Consensus size: 27
36508720 TACAGGTCGA
** * **
36508730 GGGTATTTCAGTAATTTCACAAATTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
36508757 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
36508784 GGGTATTTTGATAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
*
36508811 GGGTATTTTGGTACTTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
36508838 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
36508865 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
36508892 GGGTATTTTGGTAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
36508919 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * *
36508946 GGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
36508973 GGGTATTTTAGTAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
** * *
36509000 GGGTATTTTGGTAATTTTGTAAGCCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
36509027 GGGTATTTTGGTAATTTCACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * *
36509054 GGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
36509081 GAGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
36509108 GGGTATTTTGGTAATTTT
1 GGGTATTTTGGTAATTTT
36509126 GTAAACTAAA
Statistics
Matches: 329, Mismatches: 40, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 329 1.00
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAG
Found at i:36509133 original size:81 final size:81
Alignment explanation
Indices: 36508676--36509125 Score: 569
Period size: 81 Copynumber: 5.6 Consensus size: 81
36508666 TATAAATTAG
* ** *** *** * **
36508676 GGGTACTTTGGTAATTTTACAAGTC-GAGGGTATTTCAATAATTTTACAGGTCGAGGGTATTTCA
1 GGGTATTTTGGTAATTTTACAAACCAG-GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTG
* ** *
36508740 GTAATTTCACAAATTAG
65 GTAATTTTACAAACCAA
* *
36508757 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTACAAACCAAGGGTATTTTGG
1 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGG
* *
36508822 TACTTTTACAAACCAG
66 TAATTTTACAAACCAA
*
36508838 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGG
1 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGG
36508903 TAATTTTACAAACCAA
66 TAATTTTACAAACCAA
* * *
36508919 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAAAGGGTATTTTAG
1 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGG
36508984 TAATTTTACAAACCAA
66 TAATTTTACAAACCAA
** * * * * *
36509000 GGGTATTTTGGTAATTTTGTAAGCCAAGGGTATTTTGGTAATTTCACAAACTAGGGGTATTTTGG
1 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGG
* *
36509065 TAATTTTATAAACAAA
66 TAATTTTACAAACCAA
* *
36509081 GAGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTT
1 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTT
36509126 GTAAACTAAA
Statistics
Matches: 325, Mismatches: 43, Indels: 2
0.88 0.12 0.01
Matches are distributed among these distances:
81 324 1.00
82 1 0.00
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.39
Consensus pattern (81 bp):
GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGG
TAATTTTACAAACCAA
Found at i:36512858 original size:40 final size:40
Alignment explanation
Indices: 36512784--36512925 Score: 216
Period size: 40 Copynumber: 3.6 Consensus size: 40
36512774 AACCCAAGTA
* *
36512784 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
*
36512823 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
36512863 CCTTCGGGACTTCGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
36512903 CCTTCGGGACTTAGTCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
36512926 CATCCGAATA
Statistics
Matches: 94, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
39 12 0.13
40 81 0.86
41 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:36514784 original size:39 final size:39
Alignment explanation
Indices: 36514703--36514827 Score: 171
Period size: 39 Copynumber: 3.2 Consensus size: 39
36514693 GGCTGTCACA
* * * *
36514703 CGGACATATTTCCAGCA-AGTAGCCTGCGGACCTTAAGCC
1 CGGATATAATTCCAGCACA-TAGCCTGCGGACCCTAAGTC
* *
36514742 CGGATATAATTCTAGTACATAGCCTGCGGACCCTAAGTC
1 CGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGTC
*
36514781 CGGATATAATTCCAGCACATAGCCTGTGGACCCTAAGTC
1 CGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGTC
36514820 CGGATATA
1 CGGATATA
36514828 CATCACTGAA
Statistics
Matches: 76, Mismatches: 9, Indels: 2
0.87 0.10 0.02
Matches are distributed among these distances:
39 75 0.99
40 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (39 bp):
CGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGTC
Found at i:36520660 original size:39 final size:39
Alignment explanation
Indices: 36520574--36520750 Score: 143
Period size: 39 Copynumber: 4.6 Consensus size: 39
36520564 ACTTAAAACC
* *
36520574 AATTACCAGCAC-AAGCCTGCGGGAATTTAAACCCGG-TAT
1 AATT-CCAGCACGAAGCCTGCGGGACTTT-AGCCCGGATAT
* * *
36520613 AATACCAGCTCGAAGCCTGCGGGACTTTAGCCCGGACAT
1 AATTCCAGCACGAAGCCTGCGGGACTTTAGCCCGGATAT
* * * *
36520652 ATTTCCAGCACGTAGCCTAC-GGACCTTAAG-CCGGATAT
1 AATTCCAGCACGAAGCCTGCGGGA-CTTTAGCCCGGATAT
* * *
36520690 AATTCCAGCAC-ATAGCCTGC-GGACCCTAAGTCCGGATAT
1 AATTCCAGCACGA-AGCCTGCGGGA-CTTTAGCCCGGATAT
36520729 AATTCCAGCAC-ATAGCCTGCGG
1 AATTCCAGCACGA-AGCCTGCGG
36520751 ACCCTAAGTC
Statistics
Matches: 116, Mismatches: 16, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
38 47 0.41
39 68 0.59
40 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.20
Consensus pattern (39 bp):
AATTCCAGCACGAAGCCTGCGGGACTTTAGCCCGGATAT
Found at i:36520698 original size:77 final size:78
Alignment explanation
Indices: 36520606--36520768 Score: 190
Period size: 77 Copynumber: 2.1 Consensus size: 78
36520596 GAATTTAAAC
* * * * *
36520606 CCGG-TATAATACCAGCTCGA-AGCCTGCGGGA-CTTTAGCCCGGACATATTTCCAGCACGTAGC
1 CCGGATATAATACCAGCAC-ATAGCCTGC-GGACCCTAAGCCCGGACATAATTCCAGCACATAGC
*
36520668 CTACGGACCTTAAG-
64 CTACGGACCCTAAGT
* * *
36520682 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAATTCCAGCACATAGCCT
1 CCGGATATAATACCAGCACATAGCCTGCGGACCCTAAGCCCGGACATAATTCCAGCACATAGCCT
*
36520747 GCGGACCCTAAGT
66 ACGGACCCTAAGT
36520760 CCGGATATA
1 CCGGATATA
36520769 CATCACTGAA
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
76 8 0.11
77 56 0.77
78 9 0.12
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (78 bp):
CCGGATATAATACCAGCACATAGCCTGCGGACCCTAAGCCCGGACATAATTCCAGCACATAGCCT
ACGGACCCTAAGT
Found at i:36520751 original size:39 final size:39
Alignment explanation
Indices: 36520644--36520768 Score: 198
Period size: 39 Copynumber: 3.2 Consensus size: 39
36520634 GGACTTTAGC
* * * * *
36520644 CCGGACATATTTCCAGCACGTAGCCTACGGACCTTAAG-
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
36520682 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
36520721 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
36520760 CCGGATATA
1 CCGGATATA
36520769 CATCACTGAA
Statistics
Matches: 81, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
38 33 0.41
39 48 0.59
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (39 bp):
CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
Found at i:36522116 original size:24 final size:24
Alignment explanation
Indices: 36522089--36522134 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
36522079 AACCCATTAC
*
36522089 AGAATAAGAAACATTATCAGAACT
1 AGAATAAGAAACATAATCAGAACT
* *
36522113 AGAATCAGAATCATAATCAGAA
1 AGAATAAGAAACATAATCAGAA
36522135 TTAGGTGACA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.54, C:0.13, G:0.13, T:0.20
Consensus pattern (24 bp):
AGAATAAGAAACATAATCAGAACT
Found at i:36522151 original size:31 final size:31
Alignment explanation
Indices: 36522115--36522206 Score: 121
Period size: 31 Copynumber: 3.0 Consensus size: 31
36522105 TCAGAACTAG
* * *
36522115 AATCAGAATCATAATCAGAATTAGGTGACAA
1 AATCAGAATCAGAATCAGAATCAGGTAACAA
*
36522146 AATCAGAATCAGAATCAGTATCAGGTAACAA
1 AATCAGAATCAGAATCAGAATCAGGTAACAA
* * *
36522177 AATCAAAATTAGAATCAGTATCAGGTAACA
1 AATCAGAATCAGAATCAGAATCAGGTAACA
36522207 TAATAAAAAA
Statistics
Matches: 55, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 55 1.00
ACGTcount: A:0.49, C:0.14, G:0.15, T:0.22
Consensus pattern (31 bp):
AATCAGAATCAGAATCAGAATCAGGTAACAA
Found at i:36522222 original size:32 final size:31
Alignment explanation
Indices: 36522127--36522223 Score: 113
Period size: 31 Copynumber: 3.1 Consensus size: 31
36522117 TCAGAATCAT
* * * * * *
36522127 AATCAGAATTAGGTGACAAAATCAGAATCAG
1 AATCAGTATCAGGTAACAAAATAAAAATTAG
*
36522158 AATCAGTATCAGGTAACAAAATCAAAATTAG
1 AATCAGTATCAGGTAACAAAATAAAAATTAG
*
36522189 AATCAGTATCAGGTAACATAATAAAAAATTAG
1 AATCAGTATCAGGTAACAAAAT-AAAAATTAG
36522221 AAT
1 AAT
36522224 GTAAATGCAA
Statistics
Matches: 58, Mismatches: 7, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
31 47 0.81
32 11 0.19
ACGTcount: A:0.52, C:0.11, G:0.14, T:0.23
Consensus pattern (31 bp):
AATCAGTATCAGGTAACAAAATAAAAATTAG
Found at i:36522408 original size:27 final size:26
Alignment explanation
Indices: 36522360--36522419 Score: 68
Period size: 27 Copynumber: 2.3 Consensus size: 26
36522350 GCTCAATTAT
* *
36522360 CAGATATTGTGACAGAGTCACCAGATA
1 CAGATATTGTGACAGAGCCACCA-AAA
*
36522387 CAGATATTGTGGCTAG-GCCACCAAAA
1 CAGATATTGTGAC-AGAGCCACCAAAA
36522413 CAGATAT
1 CAGATAT
36522420 ATATATGTGG
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
26 9 0.31
27 18 0.62
28 2 0.07
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACAGAGCCACCAAAA
Found at i:36522506 original size:27 final size:26
Alignment explanation
Indices: 36522458--36522509 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
36522448 GCAAGGCTGC
*
36522458 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
36522484 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
36522510 TTGCAACGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:36522784 original size:27 final size:27
Alignment explanation
Indices: 36522754--36522921 Score: 212
Period size: 27 Copynumber: 6.3 Consensus size: 27
36522744 GGGGTAAAAT
* * *
36522754 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
36522781 GGTAATTCTATCTTACAGGGGTATTT-
1 GGTAATTCTACCCTACAAGGGTATTTC
*
36522807 AGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
36522834 GGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
36522861 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
36522888 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
36522915 GGTAATT
1 GGTAATT
36522922 TTTTAAATCA
Statistics
Matches: 119, Mismatches: 21, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
26 22 0.18
27 97 0.82
ACGTcount: A:0.25, C:0.19, G:0.20, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:36522974 original size:27 final size:27
Alignment explanation
Indices: 36522960--36523359 Score: 444
Period size: 27 Copynumber: 14.9 Consensus size: 27
36522950 TGTAAATCAG
* * **
36522960 GGGTACTTTGGTAATTTTACAAGTCAA
1 GGGTATTTTGGTAATTTTATAAACCAA
*** * ***
36522987 GGGTATTTCAATAATTTTACAGGTCAA
1 GGGTATTTTGGTAATTTTATAAACCAA
* * * * *
36523014 GGGTATTTTAGTAATTTCACAAATCAG
1 GGGTATTTTGGTAATTTTATAAACCAA
* * *
36523041 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTATAAACCAA
* *
36523068 GGGTATTTTGATAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAA
*
36523095 GGGTATTTTGGTAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAA
*
36523122 -GGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAA
* *
36523148 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAA
*
36523175 GGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTGGTAATTTTATAAACCAA
* * * *
36523202 GGGTATTTTAGTAATTTTACAAATC-G
1 GGGTATTTTGGTAATTTTATAAACCAA
*
36523228 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAA
* *
36523255 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAA
*
36523282 GGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAA
* * *
36523309 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAA
*
36523336 GGGTATTTTGGTAATTTGATAAAC
1 GGGTATTTTGGTAATTTTATAAAC
36523360 TAAAGTATTC
Statistics
Matches: 321, Mismatches: 50, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
26 45 0.14
27 276 0.86
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTATAAACCAA
Found at i:36523001 original size:54 final size:54
Alignment explanation
Indices: 36522957--36523359 Score: 540
Period size: 54 Copynumber: 7.5 Consensus size: 54
36522947 TTCTGTAAAT
* * ** *** ***
36522957 CAGGGGTACTTTGGTAATTTTACAAGTCAAGGGTATTTCAATAATTTTACAGGT
1 CAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTGGTAATTTTACAAAC
* * * * * *
36523011 CAAGGGTATTTTAGTAATTTCACAAATCAGGGGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTGGTAATTTTACAAAC
* * *
36523065 TAGGGGTATTTTGATAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTGGTAATTTTACAAAC
* *
36523119 CA-AGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTGGTAATTTTACAAAC
* * *
36523172 CAGGGGTATTTTGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAAT
1 CAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTGGTAATTTTACAAAC
*
36523226 C-GGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTGGTAATTTTACAAAC
* *
36523279 CAGGGGTATTTTGGTGATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTGGTAATTTTACAAAC
*
36523333 CAGGGGTATTTTGGTAATTTGATAAAC
1 CAGGGGTATTTTGGTAATTTTATAAAC
36523360 TAAAGTATTC
Statistics
Matches: 309, Mismatches: 38, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
53 98 0.32
54 211 0.68
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (54 bp):
CAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTGGTAATTTTACAAAC
Found at i:36523368 original size:107 final size:108
Alignment explanation
Indices: 36522957--36523352 Score: 562
Period size: 107 Copynumber: 3.7 Consensus size: 108
36522947 TTCTGTAAAT
* ** * * *** *
36522957 CAGGGGTACTTTGGTAATTTTACAAGTCAAGGGTATTTCAATAATTTTACAGGTCAAGGGTATTT
1 CAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTT
* *** * *
36523022 TAGTAATTTCACAAATCAGGGGTATTTTGGTAATTTTACAAAC
66 TGGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAAC
* * * *
36523065 TAGGGGTATTTTGATAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAACCA-AGGTATTT
1 CAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTT
36523129 TGGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAAC
66 TGGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAAC
* * *
36523172 CAGGGGTATTTTGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAATC-GGGGTATTT
1 CAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTT
36523236 TGGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAAC
66 TGGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAAC
* *
36523279 CAGGGGTATTTTGGTGATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTT
1 CAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTT
36523344 TGGTAATTT
66 TGGTAATTT
36523353 GATAAACTAA
Statistics
Matches: 258, Mismatches: 28, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
107 195 0.76
108 63 0.24
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.39
Consensus pattern (108 bp):
CAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTT
TGGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAAC
Found at i:36529695 original size:63 final size:63
Alignment explanation
Indices: 36529623--36529747 Score: 232
Period size: 63 Copynumber: 2.0 Consensus size: 63
36529613 TCTAAAAGTC
* *
36529623 TATATAATTTAGAGTTATCACCATATTATGAATCTCACAAGCAAGTAGATCCATAAATAGATA
1 TATATAATTTAGAGTTATCACCATATTATGAATCTCACAAGCAAGTAGATCCACAAACAGATA
36529686 TATATAATTTAGAGTTATCACCATATTATGAATCTCACAAGCAAGTAGATCCACAAACAGAT
1 TATATAATTTAGAGTTATCACCATATTATGAATCTCACAAGCAAGTAGATCCACAAACAGAT
36529748 TCAGGATCTA
Statistics
Matches: 60, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
63 60 1.00
ACGTcount: A:0.42, C:0.16, G:0.11, T:0.30
Consensus pattern (63 bp):
TATATAATTTAGAGTTATCACCATATTATGAATCTCACAAGCAAGTAGATCCACAAACAGATA
Found at i:36534755 original size:27 final size:27
Alignment explanation
Indices: 36534724--36534865 Score: 144
Period size: 27 Copynumber: 5.3 Consensus size: 27
36534714 TTAGTTTACC
* *
36534724 AAATTACTGAAATACCCTCAACTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * *
36534751 AAATTAC-CAAAGTACCCCCGATTTATA
1 AAATTACTGAAA-TACCCTCGATTTGTA
** * *
36534778 AAATTACCCAAATATCCTCGATATGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * *
36534805 AAATTACAGCAATACCCTC-AGTTTGCA
1 AAATTACTGAAATACCCTCGA-TTTGTA
36534832 AAATTACTGAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
36534859 AAATTAC
1 AAATTAC
36534866 CCAATTATCG
Statistics
Matches: 93, Mismatches: 18, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
26 4 0.04
27 84 0.90
28 5 0.05
ACGTcount: A:0.40, C:0.23, G:0.08, T:0.29
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGATTTGTA
Found at i:36534861 original size:81 final size:81
Alignment explanation
Indices: 36534724--36534874 Score: 205
Period size: 81 Copynumber: 1.9 Consensus size: 81
36534714 TTAGTTTACC
* *
36534724 AAATTACTGAAATACCCTCAACTTGTAAAATTACCAAAGTACCCCCGATTTATAAAATTACCCAA
1 AAATTACAGAAATACCCTCAACTTGCAAAATTACCAAAGTACCCCCGATTTATAAAATTACCCAA
36534789 ATATCCTCGATATGTA
66 ATATCCTCGATATGTA
* ** * * *
36534805 AAATTACAGCAATACCCTCAGTTTGCAAAATTACTGAAA-TACCCTCGATTTGTAAAATTACCCA
1 AAATTACAGAAATACCCTCAACTTGCAAAATTAC-CAAAGTACCCCCGATTTATAAAATTACCCA
*
36534869 ATTATC
65 AATATC
36534875 GTTTTACCCT
Statistics
Matches: 60, Mismatches: 9, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
81 57 0.95
82 3 0.05
ACGTcount: A:0.40, C:0.23, G:0.08, T:0.29
Consensus pattern (81 bp):
AAATTACAGAAATACCCTCAACTTGCAAAATTACCAAAGTACCCCCGATTTATAAAATTACCCAA
ATATCCTCGATATGTA
Found at i:36534906 original size:27 final size:27
Alignment explanation
Indices: 36534875--36535180 Score: 459
Period size: 27 Copynumber: 11.3 Consensus size: 27
36534865 CCCAATTATC
36534875 GTTTTACCCTCGATTTATAGAATTACT
1 GTTTTACCCTCGATTTATAGAATTACT
* *
36534902 ATTTTTACCCTCGATTTATAGAATTACC
1 -GTTTTACCCTCGATTTATAGAATTACT
*
36534930 GTTTTACCCTCAATTTATAGAATTACT
1 GTTTTACCCTCGATTTATAGAATTACT
* * * *
36534957 ATTTTACCCACGATTTACAGAATTACC
1 GTTTTACCCTCGATTTATAGAATTACT
36534984 GTTTTACCCTCGATTTATAGAATTACT
1 GTTTTACCCTCGATTTATAGAATTACT
*
36535011 GTTTTACCCTCGATTTATAGAATTACC
1 GTTTTACCCTCGATTTATAGAATTACT
36535038 GTTTTACCCTCGATTTATAGAATTACT
1 GTTTTACCCTCGATTTATAGAATTACT
* *
36535065 ATTTTACCCTCGATTTACAGAATTACT
1 GTTTTACCCTCGATTTATAGAATTACT
*
36535092 GTTTTACCCTCAATTTATAGAATTACT
1 GTTTTACCCTCGATTTATAGAATTACT
* *
36535119 ATTTTACCCTCGATTTATAGAATTACC
1 GTTTTACCCTCGATTTATAGAATTACT
* *
36535146 GTCTTACCCTCGATTTATAGAATTACC
1 GTTTTACCCTCGATTTATAGAATTACT
*
36535173 ATTTTACC
1 GTTTTACC
36535181 TTCAATGTAA
Statistics
Matches: 250, Mismatches: 28, Indels: 1
0.90 0.10 0.00
Matches are distributed among these distances:
27 225 0.90
28 25 0.10
ACGTcount: A:0.28, C:0.21, G:0.09, T:0.42
Consensus pattern (27 bp):
GTTTTACCCTCGATTTATAGAATTACT
Found at i:36535209 original size:54 final size:54
Alignment explanation
Indices: 36534868--36535180 Score: 527
Period size: 54 Copynumber: 5.8 Consensus size: 54
36534858 AAAATTACCC
*
36534868 AATTATCGTTTTACCCTCGATTTATAGAATTACTATTTTTACCCTCGATTTATAG
1 AATTACCGTTTTACCCTCGATTTATAGAATTACTA-TTTTACCCTCGATTTATAG
* * *
36534923 AATTACCGTTTTACCCTCAATTTATAGAATTACTATTTTACCCACGATTTACAG
1 AATTACCGTTTTACCCTCGATTTATAGAATTACTATTTTACCCTCGATTTATAG
*
36534977 AATTACCGTTTTACCCTCGATTTATAGAATTACTGTTTTACCCTCGATTTATAG
1 AATTACCGTTTTACCCTCGATTTATAGAATTACTATTTTACCCTCGATTTATAG
*
36535031 AATTACCGTTTTACCCTCGATTTATAGAATTACTATTTTACCCTCGATTTACAG
1 AATTACCGTTTTACCCTCGATTTATAGAATTACTATTTTACCCTCGATTTATAG
* *
36535085 AATTACTGTTTTACCCTCAATTTATAGAATTACTATTTTACCCTCGATTTATAG
1 AATTACCGTTTTACCCTCGATTTATAGAATTACTATTTTACCCTCGATTTATAG
* *
36535139 AATTACCGTCTTACCCTCGATTTATAGAATTACCATTTTACC
1 AATTACCGTTTTACCCTCGATTTATAGAATTACTATTTTACC
36535181 TTCAATGTAA
Statistics
Matches: 241, Mismatches: 17, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
54 208 0.86
55 33 0.14
ACGTcount: A:0.28, C:0.21, G:0.09, T:0.42
Consensus pattern (54 bp):
AATTACCGTTTTACCCTCGATTTATAGAATTACTATTTTACCCTCGATTTATAG
Found at i:36535221 original size:27 final size:27
Alignment explanation
Indices: 36535191--36535289 Score: 117
Period size: 27 Copynumber: 3.7 Consensus size: 27
36535181 TTCAATGTAA
* *
36535191 AAAATTACTAAAATACCCTTGGTTTAC
1 AAAATTACCAAAATACCCTTGGTTTAT
** * **
36535218 AAAATTACCAAAATACCCACGATCAAT
1 AAAATTACCAAAATACCCTTGGTTTAT
* *
36535245 AAAATTACCAAAATACCATTGGTTTGT
1 AAAATTACCAAAATACCCTTGGTTTAT
36535272 AAAATTACCAAAATACCC
1 AAAATTACCAAAATACCC
36535290 CTACTTTGTG
Statistics
Matches: 57, Mismatches: 15, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 57 1.00
ACGTcount: A:0.46, C:0.21, G:0.06, T:0.26
Consensus pattern (27 bp):
AAAATTACCAAAATACCCTTGGTTTAT
Found at i:36535235 original size:81 final size:81
Alignment explanation
Indices: 36534876--36535227 Score: 461
Period size: 81 Copynumber: 4.3 Consensus size: 81
36534866 CCAATTATCG
* *
36534876 TTTTACCCTCGATTTATAGAATTACTATTTTTACCCTCGATTTATAGAATTACCGTTTTACCCTC
1 TTTTACCCTCGATTTACAGAATTACCA-TTTTACCCTCGATTTATAGAATTACCGTTTTACCCTC
36534941 AATTTATAGAATTACTA
65 AATTTATAGAATTACTA
* * * *
36534958 TTTTACCCACGATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACTGTTTTACCCTCG
1 TTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCA
**
36535023 ATTTATAGAATTACCG
66 ATTTATAGAATTACTA
* * * *
36535039 TTTTACCCTCGATTTATAGAATTACTATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCA
1 TTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCA
36535104 ATTTATAGAATTACTA
66 ATTTATAGAATTACTA
* * * * *
36535120 TTTTACCCTCGATTTATAGAATTACCGTCTTACCCTCGATTTATAGAATTACCATTTTACCTTCA
1 TTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCA
* * *
36535185 ATGTAAAAAATTACTA
66 ATTTATAGAATTACTA
*** * * *
36535201 AAATACCCTTGGTTTACAAAATTACCA
1 TTTTACCCTCGATTTACAGAATTACCA
36535228 AAATACCCAC
Statistics
Matches: 236, Mismatches: 34, Indels: 1
0.87 0.13 0.00
Matches are distributed among these distances:
81 213 0.90
82 23 0.10
ACGTcount: A:0.30, C:0.21, G:0.08, T:0.41
Consensus pattern (81 bp):
TTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCA
ATTTATAGAATTACTA
Found at i:36535297 original size:27 final size:27
Alignment explanation
Indices: 36535191--36535315 Score: 90
Period size: 27 Copynumber: 4.6 Consensus size: 27
36535181 TTCAATGTAA
* * * *
36535191 AAAATTACTAAAATACCCTTGGTTTAC
1 AAAATTACCAAAATACCCCTAGTTTAT
* **
36535218 AAAATTACCAAAATACCCACGA-TCAAT
1 AAAATTACCAAAATACCC-CTAGTTTAT
** * *
36535245 AAAATTACCAAAATACCATTGGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTAT
* *
36535272 AAAATTACCAAAATACCCCTACTTTGT
1 AAAATTACCAAAATACCCCTAGTTTAT
** *
36535299 GTAATTATCAAAATACC
1 AAAATTACCAAAATACC
36535316 ATTGTAGGGT
Statistics
Matches: 75, Mismatches: 21, Indels: 4
0.75 0.21 0.04
Matches are distributed among these distances:
27 75 1.00
ACGTcount: A:0.44, C:0.21, G:0.06, T:0.29
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTAGTTTAT
Found at i:36535331 original size:27 final size:27
Alignment explanation
Indices: 36535309--36535493 Score: 253
Period size: 27 Copynumber: 6.9 Consensus size: 27
36535299 GTAATTATCA
** *
36535309 AAATACCATTGTAGGGTAGAATTATCG
1 AAATACCCCTGTAGGGTAGAATTACCG
*
36535336 AAATACCCCTGTAGGGTAGAATAACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* *
36535363 AAATACCCTTGTAGGGTAGAATTACCA
1 AAATACCCCTGTAGGGTAGAATTACCG
*
36535390 AAATACCCCTGTAGGGTAGAATGACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* *
36535417 AAATACCCTTGTAGGGTAGAAATACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
36535444 AAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* * * *
36535471 AGATACCCTTGTGGGGTAAAATT
1 AAATACCCCTGTAGGGTAGAATT
36535494 TCCATTTTTC
Statistics
Matches: 139, Mismatches: 19, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 139 1.00
ACGTcount: A:0.35, C:0.18, G:0.23, T:0.24
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAGAATTACCG
Found at i:36535332 original size:54 final size:53
Alignment explanation
Indices: 36535246--36535493 Score: 230
Period size: 54 Copynumber: 4.6 Consensus size: 53
36535236 ACGATCAATA
** * * * *
36535246 AAATTACCAAAATACCATTGGT-TTGTAAAATTACCAAAATACCCCTACTTTGTGT
1 AAATTACCAAAATACCATT-GTAGGGTAGAATTACCAAAATACCCCT--GTAGGGT
* * *
36535301 -AATTATCAAAATACCATTGTAGGGTAGAATTATCGAAATACCCCTGTAGGGT
1 AAATTACCAAAATACCATTGTAGGGTAGAATTACCAAAATACCCCTGTAGGGT
* * *
36535353 AGAATAACCGAAATACCCTTGTAGGGTAGAATTACCAAAATACCCCTGTAGGGT
1 A-AATTACCAAAATACCATTGTAGGGTAGAATTACCAAAATACCCCTGTAGGGT
* * * * *
36535407 AGAATGACCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGT
1 A-AATTACCAAAATACCATTGTAGGGTAGAATTACCAAAATACCCCTGTAGGGT
* * * * *
36535461 AGAATTACCGAGATACCCTTGTGGGGTAAAATT
1 A-AATTACCAAAATACCATTGTAGGGTAGAATT
36535494 TCCATTTTTC
Statistics
Matches: 167, Mismatches: 23, Indels: 7
0.85 0.12 0.04
Matches are distributed among these distances:
52 4 0.02
53 2 0.01
54 161 0.96
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.26
Consensus pattern (53 bp):
AAATTACCAAAATACCATTGTAGGGTAGAATTACCAAAATACCCCTGTAGGGT
Found at i:36535929 original size:6 final size:6
Alignment explanation
Indices: 36535898--36536004 Score: 69
Period size: 6 Copynumber: 17.3 Consensus size: 6
36535888 TTGCATTCAC
* * *
36535898 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTTTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
36535947 -TTACCTG ATACTG ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTG ATTCT-
1 ATT--CTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG
36535996 AGTTCTG AT
1 A-TTCTG AT
36536005 AATGTTTCTT
Statistics
Matches: 78, Mismatches: 12, Indels: 22
0.70 0.11 0.20
Matches are distributed among these distances:
5 6 0.08
6 60 0.77
7 9 0.12
8 3 0.04
ACGTcount: A:0.20, C:0.18, G:0.15, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:36535929 original size:25 final size:25
Alignment explanation
Indices: 36535901--36536021 Score: 102
Period size: 25 Copynumber: 4.6 Consensus size: 25
36535891 CATTCACATT
*
36535901 CTGATTTTGATTCTGTTACCTGATA
1 CTGATTCTGATTCTGTTACCTGATA
36535926 CTGATTCTGATTTTGATTCTGTTACCTGATA
1 CTGATTC------TGATTCTGTTACCTGATA
* * *
36535957 CTGATTCTGATTCTGTCACCTAATT
1 CTGATTCTGATTCTGTTACCTGATA
36535982 CTGATTCTGATTCTAGTT--CTGATA
1 CTGATTCTGATTCT-GTTACCTGATA
* * *
36536006 ATGTTTCTTATTCTGT
1 CTGATTCTGATTCTGT
36536022 AATGGGTTAA
Statistics
Matches: 79, Mismatches: 10, Indels: 16
0.75 0.10 0.15
Matches are distributed among these distances:
23 2 0.03
24 15 0.19
25 35 0.44
26 2 0.03
31 25 0.32
ACGTcount: A:0.19, C:0.17, G:0.15, T:0.49
Consensus pattern (25 bp):
CTGATTCTGATTCTGTTACCTGATA
Found at i:36535930 original size:19 final size:19
Alignment explanation
Indices: 36535908--36535965 Score: 58
Period size: 19 Copynumber: 3.4 Consensus size: 19
36535898 ATTCTGATTT
36535908 TGATTCTGTTACCTGATAC
1 TGATTCTGTTACCTGATAC
*
36535927 TGATTCTG--A--T--T-T
1 TGATTCTGTTACCTGATAC
36535939 TGATTCTGTTACCTGATAC
1 TGATTCTGTTACCTGATAC
36535958 TGATTCTG
1 TGATTCTG
36535966 ATTCTGTCAC
Statistics
Matches: 30, Mismatches: 2, Indels: 14
0.65 0.04 0.30
Matches are distributed among these distances:
12 8 0.27
13 1 0.03
14 1 0.03
15 1 0.03
16 1 0.03
17 1 0.03
18 1 0.03
19 16 0.53
ACGTcount: A:0.19, C:0.17, G:0.17, T:0.47
Consensus pattern (19 bp):
TGATTCTGTTACCTGATAC
Found at i:36535936 original size:31 final size:31
Alignment explanation
Indices: 36535898--36535968 Score: 142
Period size: 31 Copynumber: 2.3 Consensus size: 31
36535888 TTGCATTCAC
36535898 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
36535929 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
36535960 ATTCTGATT
1 ATTCTGATT
36535969 CTGTCACCTA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 40 1.00
ACGTcount: A:0.20, C:0.15, G:0.15, T:0.49
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTGATACTG
Found at i:36544016 original size:24 final size:24
Alignment explanation
Indices: 36543971--36544067 Score: 124
Period size: 24 Copynumber: 4.0 Consensus size: 24
36543961 AAGGTTGTCA
* * *
36543971 GGAGAAGATTTAGAAACGGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
*
36543995 GGAGAAGATTTAGGGGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
* *
36544019 GGAG-AGAATTTAGGAGTTGATAAA
1 GGAGAAG-ATTTAGGAGCTGATAAG
36544043 GGAGAAGATTTAGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
36544067 G
1 G
36544068 AGCAAGAGTT
Statistics
Matches: 62, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
23 2 0.03
24 58 0.94
25 2 0.03
ACGTcount: A:0.39, C:0.03, G:0.37, T:0.21
Consensus pattern (24 bp):
GGAGAAGATTTAGGAGCTGATAAG
Found at i:36545335 original size:27 final size:27
Alignment explanation
Indices: 36545284--36545344 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 27
36545274 TAAAATAGTT
* **
36545284 AAATTACTTGAATACCCCTATGTATGG
1 AAATTACTTGAATACCCCTAGGTATAA
*
36545311 AAATTAC-TGATATACCCTTAGGTATAA
1 AAATTACTTGA-ATACCCCTAGGTATAA
36545338 AAATTAC
1 AAATTAC
36545345 CATTATACCC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
26 3 0.10
27 26 0.90
ACGTcount: A:0.39, C:0.16, G:0.11, T:0.33
Consensus pattern (27 bp):
AAATTACTTGAATACCCCTAGGTATAA
Found at i:36545506 original size:27 final size:27
Alignment explanation
Indices: 36545463--36545520 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
36545453 AGGAAGCGTC
36545463 CTGGTGGCTATGCCACA-ATTATCTGAT
1 CTGGTGGCTATGCCACATA-TATCTGAT
* * *
36545490 CTGGTGGCTCTGTCACATATATCTGTT
1 CTGGTGGCTATGCCACATATATCTGAT
36545517 CTGG
1 CTGG
36545521 CAATTATCTG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
27 26 0.96
28 1 0.04
ACGTcount: A:0.17, C:0.22, G:0.24, T:0.36
Consensus pattern (27 bp):
CTGGTGGCTATGCCACATATATCTGAT
Found at i:36545544 original size:43 final size:42
Alignment explanation
Indices: 36545478--36545566 Score: 151
Period size: 43 Copynumber: 2.1 Consensus size: 42
36545468 GGCTATGCCA
*
36545478 CAATTATCTGATCTGGTGGCTCTGTCACATATATCTGTTCTGG
1 CAATTATCTGATCTGGTGACTCTGTCACAT-TATCTGTTCTGG
*
36545521 CAATTATCTGTTCTGGTGACTCTGTCACATTATCTGTTCTGG
1 CAATTATCTGATCTGGTGACTCTGTCACATTATCTGTTCTGG
36545563 CAAT
1 CAAT
36545567 CATGCTGCAT
Statistics
Matches: 44, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
42 16 0.36
43 28 0.64
ACGTcount: A:0.19, C:0.21, G:0.19, T:0.40
Consensus pattern (42 bp):
CAATTATCTGATCTGGTGACTCTGTCACATTATCTGTTCTGG
Found at i:36551911 original size:24 final size:24
Alignment explanation
Indices: 36551818--36551923 Score: 124
Period size: 24 Copynumber: 4.4 Consensus size: 24
36551808 AAAGGCTGTC
36551818 AGGAGAAGATTTAGGAGCTGA-AA
1 AGGAGAAGATTTAGGAGCTGATAA
* *
36551841 AGGGAGAGGATTTAGGGGCTGATAA
1 A-GGAGAAGATTTAGGAGCTGATAA
* *
36551866 GGGAGAGGATTTAGGAGCTGATAA
1 AGGAGAAGATTTAGGAGCTGATAA
* * *
36551890 AGGAGAAGATTTAAGAGTTGATCA
1 AGGAGAAGATTTAGGAGCTGATAA
36551914 AGGAGCAAGA
1 AGGAG-AAGA
36551924 GTTGGCCGGC
Statistics
Matches: 71, Mismatches: 9, Indels: 4
0.85 0.11 0.05
Matches are distributed among these distances:
23 1 0.01
24 64 0.90
25 6 0.08
ACGTcount: A:0.39, C:0.05, G:0.38, T:0.19
Consensus pattern (24 bp):
AGGAGAAGATTTAGGAGCTGATAA
Found at i:36553247 original size:27 final size:27
Alignment explanation
Indices: 36553209--36553292 Score: 116
Period size: 27 Copynumber: 3.1 Consensus size: 27
36553199 AGGAAGAGTC
36553209 CTGGTGGCTCTGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
* *
36553236 CTGGTGGCTCTGCCACAATTATATGTT
1 CTGGTGGCTCTGCCACAATTATCTGAT
* * *
36553263 CTGGTGACTCTGTCAC-ATTATCTGCT
1 CTGGTGGCTCTGCCACAATTATCTGAT
36553289 CTGG
1 CTGG
36553293 CAGCCATGTT
Statistics
Matches: 51, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
26 12 0.24
27 39 0.76
ACGTcount: A:0.17, C:0.25, G:0.23, T:0.36
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:36563610 original size:30 final size:30
Alignment explanation
Indices: 36563576--36563636 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
36563566 TCCTTAACTC
36563576 AAACTTTTGAAAAATTACAATTTTGCCCCT
1 AAACTTTTGAAAAATTACAATTTTGCCCCT
* * * *
36563606 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTTGAAAAATTACAATTTTGCCCCT
36563636 A
1 A
36563637 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.31, C:0.23, G:0.07, T:0.39
Consensus pattern (30 bp):
AAACTTTTGAAAAATTACAATTTTGCCCCT
Found at i:36566159 original size:53 final size:53
Alignment explanation
Indices: 36566040--36566147 Score: 207
Period size: 53 Copynumber: 2.0 Consensus size: 53
36566030 CCTTACCCGT
*
36566040 ATCCAAAGCCAATATAGGGTACGAGACATTACTGGACTTATATTTTAATATTC
1 ATCCAAAGCCAAAATAGGGTACGAGACATTACTGGACTTATATTTTAATATTC
36566093 ATCCAAAGCCAAAATAGGGTACGAGACATTACTGGACTTATATTTTAATATTC
1 ATCCAAAGCCAAAATAGGGTACGAGACATTACTGGACTTATATTTTAATATTC
36566146 AT
1 AT
36566148 TCACATTCAA
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 54 1.00
ACGTcount: A:0.37, C:0.17, G:0.15, T:0.31
Consensus pattern (53 bp):
ATCCAAAGCCAAAATAGGGTACGAGACATTACTGGACTTATATTTTAATATTC
Found at i:36568948 original size:30 final size:30
Alignment explanation
Indices: 36568914--36568974 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
36568904 TCCTTAACTC
36568914 AAACTTTAGAAAAATTACAATTTTGCCCCT
1 AAACTTTAGAAAAATTACAATTTTGCCCCT
* * * * *
36568944 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTAGAAAAATTACAATTTTGCCCCT
36568974 A
1 A
36568975 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.23, G:0.07, T:0.38
Consensus pattern (30 bp):
AAACTTTAGAAAAATTACAATTTTGCCCCT
Found at i:36570882 original size:44 final size:45
Alignment explanation
Indices: 36570834--36570958 Score: 148
Period size: 45 Copynumber: 2.8 Consensus size: 45
36570824 GAAGGTACTG
* * *
36570834 TCCCAGGCATGGTCTTACACGTAAATCAC-TA-ATC-GATGCCAATA
1 TCCCAGACGTGGTCTTACACG-AAATCACGTATATCTG-TGCCAACA
* *
36570878 TCCCAGACGCGGTCTTACACGAAATCACGTATATCTGTGCCAACG
1 TCCCAGACGTGGTCTTACACGAAATCACGTATATCTGTGCCAACA
*
36570923 TCCCAGACGTGGTCTTACACGAAAATCACATATATC
1 TCCCAGACGTGGTCTTACACG-AAATCACGTATATC
36570959 ACTCTTTGAT
Statistics
Matches: 70, Mismatches: 7, Indels: 6
0.84 0.08 0.07
Matches are distributed among these distances:
43 7 0.10
44 20 0.29
45 29 0.41
46 14 0.20
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.24
Consensus pattern (45 bp):
TCCCAGACGTGGTCTTACACGAAATCACGTATATCTGTGCCAACA
Found at i:36571379 original size:38 final size:38
Alignment explanation
Indices: 36571217--36571383 Score: 264
Period size: 38 Copynumber: 4.4 Consensus size: 38
36571207 AATATAACAA
*
36571217 GATTTAACCCGGATATAATACCAGCACGAAGCCTGCGG
1 GATTTAACCCAGATATAATACCAGCACGAAGCCTGCGG
36571255 GATTTAACCC-GAATATAATACCAGCACGAAGCCTGCGG
1 GATTTAACCCAG-ATATAATACCAGCACGAAGCCTGCGG
* * * *
36571293 GATTTAACCCGGATATAATACTAGCACGAAGTCTGTGG
1 GATTTAACCCAGATATAATACCAGCACGAAGCCTGCGG
*
36571331 GATTTAACCCATATATAATACCAGCACGAAGCCTGCGG
1 GATTTAACCCAGATATAATACCAGCACGAAGCCTGCGG
36571369 GATTTAACCCAGATA
1 GATTTAACCCAGATA
36571384 CACATCAAAT
Statistics
Matches: 118, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
37 1 0.01
38 116 0.98
39 1 0.01
ACGTcount: A:0.34, C:0.24, G:0.21, T:0.22
Consensus pattern (38 bp):
GATTTAACCCAGATATAATACCAGCACGAAGCCTGCGG
Found at i:36576999 original size:48 final size:48
Alignment explanation
Indices: 36576941--36577409 Score: 785
Period size: 48 Copynumber: 9.8 Consensus size: 48
36576931 ATATACACAC
* * * *
36576941 ATCTCCTACATATTTTACACTAGCCATTCGGCTTTACCACGTATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
36576989 ATCTCATACATATTTCACACTAGCCATTCGGTTTTACCACGTATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
36577037 ATCTCATACATATTTCACATTAGCCATTCTGCTTTACCACATATACAC
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
36577085 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
36577133 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
36577181 ATCTCACACATATTTCACATTAGCCATTTGGCTTTACCACACATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
36577229 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACACATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * * *
36577277 ATCTCATACATATTTCACATTAGCCATTCAGCTTTACCACACACATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
36577325 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
36577373 ATCTCATACATATTTCACATTAGCCATTCGGCTTTAC
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTAC
36577410 TACACACATA
Statistics
Matches: 399, Mismatches: 22, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 399 1.00
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.35
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:36580884 original size:45 final size:45
Alignment explanation
Indices: 36580766--36580908 Score: 164
Period size: 44 Copynumber: 3.2 Consensus size: 45
36580756 GTGTAATCAA
* * * *
36580766 ATATCGGTGCCACTGTCCCAGACATGGTCTTACACGTAAATCACT
1 ATATCGCTGCCAATGTCCCAGACGTGGTCTTACACGAAAATCACT
* * * * *
36580811 A-ATTGATGCCAATATCCCAGATGCGGTCTTACACG-AAATCACGT
1 ATATCGCTGCCAATGTCCCAGACGTGGTCTTACACGAAAATCAC-T
*
36580855 ATATCGCTGCCAATGTCCCAAACGTGGTCTTACACGAAAATCACAT
1 ATATCGCTGCCAATGTCCCAGACGTGGTCTTACACGAAAATCAC-T
36580901 ATATCGCT
1 ATATCGCT
36580909 CTTTGATACT
Statistics
Matches: 81, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
43 7 0.09
44 29 0.36
45 29 0.36
46 16 0.20
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (45 bp):
ATATCGCTGCCAATGTCCCAGACGTGGTCTTACACGAAAATCACT
Done.