Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 111 of 362
Found at i:36581170 original size:38 final size:38
Alignment explanation
Indices: 36581084--36581303 Score: 305
Period size: 38 Copynumber: 5.7 Consensus size: 38
36581074 GATTCCAGTC
* * * * *
36581084 ACCAGCACAAAACCTGCTGGACTTTAAGCTCGAATATAAT
1 ACCAGCACGAAGCCTGCGGGA-TTTAA-CCCGGATATAAT
* *
36581124 ACCAGCACGAAGCCTGCAGGATTTAACCCGGATGTAAT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
*
36581162 ACCAGCACGAAGCCTGCGGGATTTAACCCGAATATAAT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
* * *
36581200 ACCAGTACGAAGCGTGCGGGATTTCACCCGGATATAAT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
* *
36581238 ACCAGCACGAAGCATGCGAGATTTAACCCGGATATAAT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
36581276 ACCAGCACGAAGCCTGCGGGATTTAACC
1 ACCAGCACGAAGCCTGCGGGATTTAACC
36581304 TAGATACACA
Statistics
Matches: 161, Mismatches: 19, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
38 138 0.86
39 5 0.03
40 18 0.11
ACGTcount: A:0.33, C:0.26, G:0.22, T:0.19
Consensus pattern (38 bp):
ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
Found at i:36594529 original size:27 final size:27
Alignment explanation
Indices: 36594466--36594522 Score: 96
Period size: 27 Copynumber: 2.1 Consensus size: 27
36594456 ATTTTGAGAG
* *
36594466 AAAAACAGTTATATGCTAAGTTCAGTA
1 AAAAATAGTTATATGCTAAGTTCAATA
36594493 AAAAATAGTTATATGCTAAGTTCAATA
1 AAAAATAGTTATATGCTAAGTTCAATA
36594520 AAA
1 AAA
36594523 GTGAGTTTTG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.49, C:0.09, G:0.12, T:0.30
Consensus pattern (27 bp):
AAAAATAGTTATATGCTAAGTTCAATA
Found at i:36597161 original size:16 final size:16
Alignment explanation
Indices: 36597142--36597173 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
36597132 AATTGTTTTA
36597142 TTACAAAATTTCACTT
1 TTACAAAATTTCACTT
36597158 TTACAAAATTTCACTT
1 TTACAAAATTTCACTT
36597174 ACTCCATTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.19, G:0.00, T:0.44
Consensus pattern (16 bp):
TTACAAAATTTCACTT
Found at i:36597458 original size:50 final size:50
Alignment explanation
Indices: 36597383--36597715 Score: 364
Period size: 50 Copynumber: 6.7 Consensus size: 50
36597373 CCTAGTACGT
* *
36597383 ATAGTAGCTTGAACTTAGTACTACACATGTGACCTATCAATCTGGTACAC
1 ATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACAC
* * * *
36597433 ATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACAC
1 ATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACAC
* * * *
36597483 GTAGTAGCCTGCACTTAATACAACACATGCGACCTATCAATCTGGTACAC
1 ATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACAC
* * * * * * *
36597533 -TAGTAGCCTGCACTTAGTACTACACACGTGACTTAACCATCTGATATAT
1 ATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACAC
* ** * * *
36597582 GTAGTAGCCTGCACTTAGTACTACACATGTGATCAAAGTTAA-CGGGTACGC
1 ATAGTAGCCTGCACTTAGTACTACACATGTGA-CCTA-TCAATCTGGTACAC
* * *
36597633 ATAGTAGCCTGCACTTATTACTACACATGCGACCTATCAATCTGGTACAT
1 ATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACAC
* * * *
36597683 GTAGTAGCCTTCACTTAGTACTACGCACGTGAC
1 ATAGTAGCCTGCACTTAGTACTACACATGTGAC
36597716 TCACAACGGA
Statistics
Matches: 229, Mismatches: 50, Indels: 8
0.80 0.17 0.03
Matches are distributed among these distances:
49 42 0.18
50 151 0.66
51 35 0.15
52 1 0.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (50 bp):
ATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACAC
Found at i:36597572 original size:99 final size:100
Alignment explanation
Indices: 36597384--36597715 Score: 434
Period size: 99 Copynumber: 3.3 Consensus size: 100
36597374 CTAGTACGTA
* *
36597384 TAGTAGCTTGAACTTAGTACTACACATGTGACCTATCAATCTGGTACACATAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACATAGTAGCCTGCACTT
*
36597449 AGTACTACACACGTGACCTAACCATCTGATACACG
66 AGTACTACACACGTGACCTAACCATCTGATACATG
* * *
36597484 TAGTAGCCTGCACTTAATACAACACATGCGACCTATCAATCTGGTACAC-TAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACATAGTAGCCTGCACTT
* *
36597548 AGTACTACACACGTGACTTAACCATCTGATATATG
66 AGTACTACACACGTGACCTAACCATCTGATACATG
** * * *
36597583 TAGTAGCCTGCACTTAGTACTACACATGTGATCAAAGTTAA-CGGGTACGCATAGTAGCCTGCAC
1 TAGTAGCCTGCACTTAGTACTACACATGTGA-CCTA-TCAATCTGGTACACATAGTAGCCTGCAC
* * * * * *
36597647 TTATTACTACACATGCGACCTATCAATCTGGTACATG
64 TTAGTACTACACACGTGACCTAACCATCTGATACATG
* * *
36597684 TAGTAGCCTTCACTTAGTACTACGCACGTGAC
1 TAGTAGCCTGCACTTAGTACTACACATGTGAC
36597716 TCACAACGGA
Statistics
Matches: 202, Mismatches: 27, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
99 75 0.37
100 54 0.27
101 73 0.36
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (100 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACATAGTAGCCTGCACTT
AGTACTACACACGTGACCTAACCATCTGATACATG
Found at i:36602760 original size:6 final size:6
Alignment explanation
Indices: 36602745--36602900 Score: 117
Period size: 6 Copynumber: 25.8 Consensus size: 6
36602735 AACCAAAATG
* * * * *
36602745 AGAATC AGAATT AGAATC AGTAA-C AGAATT AGAATT AAAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
* *
36602793 AGTAA-C AGAATC AGAATC AGAATC AGAATT AGGTGAT- AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC
* * *
36602842 AGTAA-C AGAATC AGAATC AGTATT AGTAA-C AGAATC AGAATC AGGATC
1 AG-AATC AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC
36602890 AGAATC AGAAT
1 AGAATC AGAAT
36602901 GTGAATGCAA
Statistics
Matches: 121, Mismatches: 16, Indels: 26
0.74 0.10 0.16
Matches are distributed among these distances:
5 11 0.09
6 99 0.82
7 8 0.07
8 3 0.02
ACGTcount: A:0.49, C:0.12, G:0.17, T:0.22
Consensus pattern (6 bp):
AGAATC
Found at i:36603289 original size:22 final size:22
Alignment explanation
Indices: 36603257--36603314 Score: 71
Period size: 22 Copynumber: 2.6 Consensus size: 22
36603247 TAAATACGTT
*
36603257 TGGCACGAAGCCATAGTCAAGA
1 TGGCACAAAGCCATAGTCAAGA
* * * *
36603279 TGGCACAAAGCCATATTTAGGT
1 TGGCACAAAGCCATAGTCAAGA
36603301 TGGCACAAAGCCAT
1 TGGCACAAAGCCAT
36603315 TAATAACGGG
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.34, C:0.22, G:0.24, T:0.19
Consensus pattern (22 bp):
TGGCACAAAGCCATAGTCAAGA
Found at i:36603481 original size:27 final size:26
Alignment explanation
Indices: 36603405--36603484 Score: 106
Period size: 27 Copynumber: 3.0 Consensus size: 26
36603395 ATCGGTCAAA
* *
36603405 AGATATTGTGACAGAGTCACCAAATAC
1 AGATATTGTGACAGAGCCACCAGA-AC
36603432 AGATATTGTGACAGAGCCACCAGAAC
1 AGATATTGTGACAGAGCCACCAGAAC
* *
36603458 AGATATTTGTGGCATAGCCACCAGAAC
1 AGATA-TTGTGACAGAGCCACCAGAAC
36603485 GCTTCCTCCG
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
26 7 0.15
27 41 0.85
ACGTcount: A:0.38, C:0.21, G:0.21, T:0.20
Consensus pattern (26 bp):
AGATATTGTGACAGAGCCACCAGAAC
Found at i:36603713 original size:27 final size:27
Alignment explanation
Indices: 36603683--36603871 Score: 207
Period size: 27 Copynumber: 7.0 Consensus size: 27
36603673 GGGGAAAAAT
* * *
36603683 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
36603710 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
36603737 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
36603764 GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
36603791 GGTAATTCTATCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
36603818 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*** * * *
36603845 AAAAATTCTATCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
36603872 AATAATTTCA
Statistics
Matches: 141, Mismatches: 21, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 141 1.00
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:36603827 original size:81 final size:81
Alignment explanation
Indices: 36603685--36603871 Score: 230
Period size: 81 Copynumber: 2.3 Consensus size: 81
36603675 GGAAAAATGG
* * * * * * *
36603685 TAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCC
1 TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCC
*
36603750 TACAAGGGTATTTCGA
66 TACAAGGGTATTTCAA
* * *
36603766 TAATTCTACCCTACAGGGGTATTTTGGTAATTCTATCCTATAAGGGTATTTCAGTAATTCTACCC
1 TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCC
* *
36603831 TATAGGGGTATTTCAA
66 TACAAGGGTATTTCAA
* * *
36603847 AAATTCTATCCTATAGGGGTATTTC
1 TAATTCTACCCTACAGGGGTATTTC
36603872 AATAATTTCA
Statistics
Matches: 89, Mismatches: 17, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
81 89 1.00
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.36
Consensus pattern (81 bp):
TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCC
TACAAGGGTATTTCAA
Found at i:36603852 original size:54 final size:54
Alignment explanation
Indices: 36603699--36603878 Score: 236
Period size: 54 Copynumber: 3.3 Consensus size: 54
36603689 TTTACCCCAC
* * * * *
36603699 AAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTAC
1 AAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTATCCTAT
*
36603753 AAGGGTATTTC-GATAATTCTACCCTACAGGGGTATTTTGGTAATTCTATCCTAT
1 AAGGGTATTTCAG-TAATTCTACCCTACAGGGGTATTTCGGTAATTCTATCCTAT
* ***
36603807 AAGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTCAAAAATTCTATCCTAT
1 AAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTATCCTAT
* *
36603861 AGGGGTATTTCAATAATT
1 AAGGGTATTTCAGTAATT
36603879 TCAAAATCAA
Statistics
Matches: 112, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
53 1 0.01
54 110 0.98
55 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.37
Consensus pattern (54 bp):
AAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTATCCTAT
Found at i:36604228 original size:27 final size:27
Alignment explanation
Indices: 36603882--36604211 Score: 421
Period size: 27 Copynumber: 12.2 Consensus size: 27
36603872 AATAATTTCA
* * *
36603882 AAATCAAGGGTAATACGGTAATTCTAT
1 AAATCGAGGGTAAAACGGTAATTCTGT
* * * *
36603909 AAATCGAGGGTAAAATGATAATTTTAT
1 AAATCGAGGGTAAAACGGTAATTCTGT
* * *
36603936 AAATTGAGGGTAAATCAGTAATTCTGT
1 AAATCGAGGGTAAAACGGTAATTCTGT
* * **
36603963 AAATCAAGGGTAAAACGGTAATTTTAC
1 AAATCGAGGGTAAAACGGTAATTCTGT
*
36603990 AAATCGAGGGTAAAACGATAATTCTGT
1 AAATCGAGGGTAAAACGGTAATTCTGT
* **
36604017 AAATCGAGGATAAAATAGTAATTCTGT
1 AAATCGAGGGTAAAACGGTAATTCTGT
* **
36604044 AAA-CTAAGGGTAAAACAATAATTCTGT
1 AAATC-GAGGGTAAAACGGTAATTCTGT
*
36604071 AAATCGAGGGTAAAACAGTAATTCTGT
1 AAATCGAGGGTAAAACGGTAATTCTGT
*
36604098 AAATTGAGGGTAAAACGGTAATTCTGT
1 AAATCGAGGGTAAAACGGTAATTCTGT
36604125 AAATCGAGGGTAAAACGGTAATTCTGT
1 AAATCGAGGGTAAAACGGTAATTCTGT
36604152 AAA-CTGAGGGTAAAACGGTAATTCTGT
1 AAATC-GAGGGTAAAACGGTAATTCTGT
36604179 AAATCGAGGGTAAAACGGTAATTCTGT
1 AAATCGAGGGTAAAACGGTAATTCTGT
36604206 AAATCG
1 AAATCG
36604212 GGAGTACTTT
Statistics
Matches: 262, Mismatches: 37, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
26 2 0.01
27 258 0.98
28 2 0.01
ACGTcount: A:0.41, C:0.10, G:0.22, T:0.28
Consensus pattern (27 bp):
AAATCGAGGGTAAAACGGTAATTCTGT
Found at i:36606246 original size:36 final size:34
Alignment explanation
Indices: 36606206--36606346 Score: 129
Period size: 36 Copynumber: 4.2 Consensus size: 34
36606196 AAGAAACATT
* *
36606206 ATCAGAATTGGAACCAAAATGAGAATCAGAATCAGA
1 ATCAGAATT-GAA-CAGAATCAGAATCAGAATCAGA
36606242 ATCAG---T-AACAGAATCAGAATCAGAATCAGA
1 ATCAGAATTGAACAGAATCAGAATCAGAATCAGA
36606272 ATCA-ATATTAGTAACAGAATCAGAATCAGAATCAGA
1 ATCAGA-ATT-G-AACAGAATCAGAATCAGAATCAGA
* *
36606308 ATTAG--GTG-ACAGAATCAGAATCAGTAA-CAGA
1 ATCAGAATTGAACAGAATCAGAATCAG-AATCAGA
36606339 ATCAGAAT
1 ATCAGAAT
36606347 CAGAACCAGA
Statistics
Matches: 88, Mismatches: 6, Indels: 25
0.74 0.05 0.21
Matches are distributed among these distances:
30 24 0.27
31 26 0.30
32 2 0.02
33 3 0.03
34 1 0.01
36 32 0.36
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.19
Consensus pattern (34 bp):
ATCAGAATTGAACAGAATCAGAATCAGAATCAGA
Found at i:36606378 original size:6 final size:6
Alignment explanation
Indices: 36606227--36606358 Score: 139
Period size: 6 Copynumber: 21.8 Consensus size: 6
36606217 AACCAAAATG
36606227 AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC AGAATC
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC
* * *
36606275 A-ATATT AGTAA-C AGAATC AGAATC AGAATC AGAATT AG-GTGAC AGAATC
1 AGA-ATC AG-AATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC
*
36606324 AGAATC AGTAA-C AGAATC AGAATC AGAACC AGAAT
1 AGAATC AG-AATC AGAATC AGAATC AGAATC AGAAT
36606359 TACGTGATAG
Statistics
Matches: 107, Mismatches: 8, Indels: 22
0.78 0.06 0.16
Matches are distributed among these distances:
5 8 0.07
6 90 0.84
7 7 0.07
8 2 0.02
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.18
Consensus pattern (6 bp):
AGAATC
Found at i:36606564 original size:27 final size:27
Alignment explanation
Indices: 36606500--36606573 Score: 87
Period size: 27 Copynumber: 2.8 Consensus size: 27
36606490 AGCATGGCTG
* * *
36606500 CCAG-AACAGATATCGTGACAGAGTCA
1 CCAGAAACAGATATTGTGGCAGAGCCA
36606526 CCAGAAACAGATATTGTGGCAGAGCCA
1 CCAGAAACAGATATTGTGGCAGAGCCA
** *
36606553 CCAGAATTAGATAATGTGGCA
1 CCAGAAACAGATATTGTGGCA
36606574 AACCCACCTA
Statistics
Matches: 41, Mismatches: 6, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
26 4 0.10
27 37 0.90
ACGTcount: A:0.38, C:0.20, G:0.24, T:0.18
Consensus pattern (27 bp):
CCAGAAACAGATATTGTGGCAGAGCCA
Found at i:36606580 original size:27 final size:27
Alignment explanation
Indices: 36606524--36606581 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
36606514 GTGACAGAGT
* * *
36606524 CACCAGAAACAGATATTGTGGCAGAGC
1 CACCAGAAACAGATAATGTGGCAAACC
**
36606551 CACCAGAATTAGATAATGTGGCAAACC
1 CACCAGAAACAGATAATGTGGCAAACC
36606578 CACC
1 CACC
36606582 TAACAGAACA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.38, C:0.26, G:0.21, T:0.16
Consensus pattern (27 bp):
CACCAGAAACAGATAATGTGGCAAACC
Found at i:36606771 original size:22 final size:22
Alignment explanation
Indices: 36606739--36606796 Score: 71
Period size: 22 Copynumber: 2.6 Consensus size: 22
36606729 TAAATACGTT
*
36606739 TGGCACGAAGCCATAGTCAAGA
1 TGGCACAAAGCCATAGTCAAGA
* * * *
36606761 TGGCACAAAGCCATATTTAGGT
1 TGGCACAAAGCCATAGTCAAGA
36606783 TGGCACAAAGCCAT
1 TGGCACAAAGCCAT
36606797 TAATAACGGG
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.34, C:0.22, G:0.24, T:0.19
Consensus pattern (22 bp):
TGGCACAAAGCCATAGTCAAGA
Found at i:36606929 original size:27 final size:27
Alignment explanation
Indices: 36606899--36606962 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 27
36606889 ATATTGTGAT
* *
36606899 AGAGTCACCAAATACATATATTT-TGGC
1 AGAGCCACCAAA-ACAGATATTTGTGGC
*
36606926 AGAGCCACCAGAACAGATATTTGTGGC
1 AGAGCCACCAAAACAGATATTTGTGGC
*
36606953 ATAGCCACCA
1 AGAGCCACCA
36606963 GAACGCTTCC
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 9 0.28
27 23 0.72
ACGTcount: A:0.36, C:0.23, G:0.19, T:0.22
Consensus pattern (27 bp):
AGAGCCACCAAAACAGATATTTGTGGC
Found at i:36606963 original size:27 final size:26
Alignment explanation
Indices: 36606916--36606966 Score: 84
Period size: 27 Copynumber: 1.9 Consensus size: 26
36606906 CCAAATACAT
36606916 ATATTTTGGCAGAGCCACCAGAACAG
1 ATATTTTGGCAGAGCCACCAGAACAG
*
36606942 ATATTTGTGGCATAGCCACCAGAAC
1 ATATTT-TGGCAGAGCCACCAGAAC
36606967 GCTTCCTCCG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 6 0.26
27 17 0.74
ACGTcount: A:0.33, C:0.24, G:0.22, T:0.22
Consensus pattern (26 bp):
ATATTTTGGCAGAGCCACCAGAACAG
Found at i:36607214 original size:27 final size:26
Alignment explanation
Indices: 36607165--36607352 Score: 147
Period size: 27 Copynumber: 7.3 Consensus size: 26
36607155 GGGGCAAAAT
* * *
36607165 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTAC-AGGGTATTTC
36607192 GGTAATTCTACCCTACA--G-----C
1 GGTAATTCTACCCTACAGGGTATTTC
* *
36607211 GGTATTTCTACCTTACAAGGGTATTTC
1 GGTAATTCTACCCTAC-AGGGTATTTC
* *
36607238 GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACA-GGGTATTTC
* *
36607265 GGTAATTCTATCCTATAAGGGTATTTC
1 GGTAATTCTACCCTA-CAGGGTATTTC
* *
36607292 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACA-GGGTATTTC
* *
36607319 AGAAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACA-GGGTATTTC
*
36607346 AGTAATT
1 GGTAATT
36607353 TCACAATCAA
Statistics
Matches: 132, Mismatches: 18, Indels: 22
0.77 0.10 0.13
Matches are distributed among these distances:
19 15 0.11
20 1 0.01
22 1 0.01
24 1 0.01
26 3 0.02
27 110 0.83
28 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.35
Consensus pattern (26 bp):
GGTAATTCTACCCTACAGGGTATTTC
Found at i:36607219 original size:19 final size:20
Alignment explanation
Indices: 36607191--36607237 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 20
36607181 AAGGGTATCT
*
36607191 CGGTAATTCTACCCTAC-AG
1 CGGTATTTCTACCCTACAAG
*
36607210 CGGTATTTCTACCTTACAAG
1 CGGTATTTCTACCCTACAAG
36607230 -GGTATTTC
1 CGGTATTTC
36607238 GATAATTCTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 23 0.92
20 2 0.08
ACGTcount: A:0.23, C:0.26, G:0.17, T:0.34
Consensus pattern (20 bp):
CGGTATTTCTACCCTACAAG
Found at i:36607298 original size:54 final size:54
Alignment explanation
Indices: 36607216--36607352 Score: 186
Period size: 54 Copynumber: 2.5 Consensus size: 54
36607206 ACAGCGGTAT
* ** *
36607216 TTCTACCTTACAAGGGTATTTC-GATAATTCTACCCTACAGGGGTATTTTGGTAA
1 TTCTACCCTACAAGGGTATTTCAG-TAATTCTACCCTACAGGGGTATTTCAGAAA
* * *
36607270 TTCTATCCTATAAGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTCAGAAA
1 TTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAGAAA
*
36607324 TTCTACCCTACAGGGGTATTTCAGTAATT
1 TTCTACCCTACAAGGGTATTTCAGTAATT
36607353 TCACAATCAA
Statistics
Matches: 72, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
54 71 0.99
55 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.37
Consensus pattern (54 bp):
TTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAGAAA
Found at i:36607393 original size:27 final size:27
Alignment explanation
Indices: 36607362--36607656 Score: 311
Period size: 27 Copynumber: 10.9 Consensus size: 27
36607352 TTCACAATCA
*
36607362 AGGGTAAAACGGGAATTCTGTAAATTG
1 AGGGTAAAACGGTAATTCTGTAAATTG
* * *
36607389 AGGGTAAAACGATAATTTTGTAAACTG
1 AGGGTAAAACGGTAATTCTGTAAATTG
* * * **
36607416 AGGGTAAACCAGTAATTTTGTAAATCA
1 AGGGTAAAACGGTAATTCTGTAAATTG
* * **
36607443 AGGTTAAAACGGTAATTTTACAAATTG
1 AGGGTAAAACGGTAATTCTGTAAATTG
* * *
36607470 AGGGTAGAACGATAATTCTGTAAATCG
1 AGGGTAAAACGGTAATTCTGTAAATTG
** * *
36607497 AGGGTAAAATAGTAATTCTATAAACTG
1 AGGGTAAAACGGTAATTCTGTAAATTG
* * *
36607524 AGGGTAAAACAGTAATTCTATAAATCG
1 AGGGTAAAACGGTAATTCTGTAAATTG
*
36607551 AGGGTAAAACGGTAATTCTGTAAACTG
1 AGGGTAAAACGGTAATTCTGTAAATTG
* *
36607578 AGGGTAAAATGGTAATTCTGTAAACTG
1 AGGGTAAAACGGTAATTCTGTAAATTG
** * *
36607605 AGGGTAAAATAGTAATTCTATAAATCG
1 AGGGTAAAACGGTAATTCTGTAAATTG
*
36607632 AGGGTAAAACGGTAATTCTATAAAT
1 AGGGTAAAACGGTAATTCTGTAAAT
36607657 CGAGAGTACT
Statistics
Matches: 223, Mismatches: 45, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 223 1.00
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (27 bp):
AGGGTAAAACGGTAATTCTGTAAATTG
Found at i:36607468 original size:81 final size:81
Alignment explanation
Indices: 36607361--36607655 Score: 360
Period size: 81 Copynumber: 3.6 Consensus size: 81
36607351 TTTCACAATC
* * * * * **
36607361 AAGGGTAAAACGGGAATTCTGTAAATTGAGGGTAAAACGATAATTTTGTAAACTGAGGGTAAACC
1 AAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAACTGAGGGTAAAAT
*
36607426 AGTAATTTTGTAAA-T
66 AGTAATTCTGTAAACT
* * * * * *
36607441 CAAGGTTAAAACGGTAATTTTACAAATTGAGGGTAGAACGATAATTCTGTAAA-TCGAGGGTAAA
1 -AAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAACT-GAGGGTAAA
*
36607505 ATAGTAATTCTATAAACT
64 ATAGTAATTCTGTAAACT
* *
36607523 GAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAAT
1 AAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAACTGAGGGTAAAAT
*
36607588 GGTAATTCTGTAAACT
66 AGTAATTCTGTAAACT
* * * *
36607604 GAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATAAA
1 AAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAA
36607656 TCGAGAGTAC
Statistics
Matches: 188, Mismatches: 23, Indels: 6
0.87 0.11 0.03
Matches are distributed among these distances:
80 1 0.01
81 185 0.98
82 2 0.01
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (81 bp):
AAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAACTGAGGGTAAAAT
AGTAATTCTGTAAACT
Found at i:36607689 original size:54 final size:54
Alignment explanation
Indices: 36607362--36607689 Score: 289
Period size: 54 Copynumber: 6.1 Consensus size: 54
36607352 TTCACAATCA
* * * * * ** *
36607362 AGGGTAAAACGGGAATTCTGTAAATTGAGGGTAAAACGATAATTTTGTAAACTG
1 AGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATGGTAATTTTACAAATTG
* * * * * * *
36607416 AGGGTAAACCAGTAATTTTGTAAATCAAGGTTAAAACGGTAATTTTACAAATTG
1 AGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATGGTAATTTTACAAATTG
* * * * * * *
36607470 AGGGTAGAACGATAATTCTGTAAATCGAGGGTAAAATAGTAATTCTATAAACTG
1 AGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATGGTAATTTTACAAATTG
* * * ** *
36607524 AGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAACTG
1 AGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATGGTAATTTTACAAATTG
* * * * * *
36607578 AGGGTAAAATGGTAATTCTGTAAA-CTGAGGGTAAAATAGTAATTCTATAAATCG
1 AGGGTAAAACGGTAATTCTATAAATC-GAGGGTAAAATGGTAATTTTACAAATTG
* *** *
36607632 AGGGTAAAACGGTAATTCTATAAATCGAGAGTACTTTGGTAATTTTACAAGTTG
1 AGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATGGTAATTTTACAAATTG
36607686 AGGG
1 AGGG
36607690 CATTTCAGTA
Statistics
Matches: 223, Mismatches: 49, Indels: 4
0.81 0.18 0.01
Matches are distributed among these distances:
53 1 0.00
54 221 0.99
55 1 0.00
ACGTcount: A:0.39, C:0.09, G:0.23, T:0.29
Consensus pattern (54 bp):
AGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATGGTAATTTTACAAATTG
Found at i:36611861 original size:25 final size:25
Alignment explanation
Indices: 36611833--36611880 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
36611823 TTATAATACG
* * *
36611833 AAAATGACTATTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
36611858 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
36611881 GTTTACTTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.27
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:36612070 original size:24 final size:25
Alignment explanation
Indices: 36612011--36612081 Score: 108
Period size: 24 Copynumber: 2.8 Consensus size: 25
36612001 GGAGGAAGTG
36612011 CAAAAGGGCTTATGCCCCAGTTTATT
1 CAAAAGGGCTT-TGCCCCAGTTTATT
* *
36612037 GAAAAGGGCTTTGCCTCAGTTTA-T
1 CAAAAGGGCTTTGCCCCAGTTTATT
36612061 CAAAAGGGCTTTGCCCCAGTT
1 CAAAAGGGCTTTGCCCCAGTT
36612082 GTTAAAAGAG
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
24 20 0.49
25 11 0.27
26 10 0.24
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (25 bp):
CAAAAGGGCTTTGCCCCAGTTTATT
Found at i:36612094 original size:24 final size:23
Alignment explanation
Indices: 36612011--36612094 Score: 89
Period size: 24 Copynumber: 3.4 Consensus size: 23
36612001 GGAGGAAGTG
36612011 CAAAAGGGCTTATGCCCCAGTTTATT
1 CAAAAGGGCTT-TGCCCCAG-TT-TT
* *
36612037 GAAAAGGGCTTTGCCTCAGTTTAT
1 CAAAAGGGCTTTGCCCCAGTTT-T
36612061 CAAAAGGGCTTTGCCCCAGTTGTT
1 CAAAAGGGCTTTGCCCCAGTT-TT
36612085 -AAAAGAGGCT
1 CAAAAG-GGCT
36612095 AGGCCTCCAG
Statistics
Matches: 51, Mismatches: 4, Indels: 8
0.81 0.06 0.13
Matches are distributed among these distances:
23 6 0.12
24 27 0.53
25 8 0.16
26 10 0.20
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (23 bp):
CAAAAGGGCTTTGCCCCAGTTTT
Found at i:36612106 original size:49 final size:50
Alignment explanation
Indices: 36612011--36612106 Score: 126
Period size: 49 Copynumber: 1.9 Consensus size: 50
36612001 GGAGGAAGTG
**
36612011 CAAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCTCAGTTTAT
1 CAAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTAGGCCTCAGTTTAT
*
36612061 CAAAAGGGCTT-TGCCCCAG-TTGTT-AAAAGAGGCTAGGCCTCCAGTT
1 CAAAAGGGCTTATGCCCCAGTTTATTGAAAAG-GGCTAGGCCT-CAGTT
36612107 ACATGATAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
47 5 0.12
48 12 0.29
49 13 0.32
50 11 0.27
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28
Consensus pattern (50 bp):
CAAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTAGGCCTCAGTTTAT
Found at i:36615411 original size:15 final size:15
Alignment explanation
Indices: 36615391--36615422 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
36615381 TCCTGTGTCC
36615391 ATTGCGCCTTATAGG
1 ATTGCGCCTTATAGG
36615406 ATTGCGCCTTATAGG
1 ATTGCGCCTTATAGG
36615421 AT
1 AT
36615423 GGCACCTAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.22, C:0.19, G:0.25, T:0.34
Consensus pattern (15 bp):
ATTGCGCCTTATAGG
Found at i:36620007 original size:11 final size:11
Alignment explanation
Indices: 36619971--36620011 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
36619961 CATGGTCGAT
*
36619971 ATGATATGCAC
1 ATGATATGTAC
*
36619982 ATGACATGT--
1 ATGATATGTAC
36619991 ATGATATGTAC
1 ATGATATGTAC
36620002 ATGATATGTA
1 ATGATATGTA
36620012 TGAGATGCAC
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
9 8 0.32
11 17 0.68
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.34
Consensus pattern (11 bp):
ATGATATGTAC
Found at i:36620026 original size:20 final size:20
Alignment explanation
Indices: 36619970--36620026 Score: 87
Period size: 20 Copynumber: 2.9 Consensus size: 20
36619960 ACATGGTCGA
*
36619970 TATGATATGCACATGACATG
1 TATGATATGCACATGATATG
*
36619990 TATGATATGTACATGATATG
1 TATGATATGCACATGATATG
*
36620010 TATGAGATGCACATGAT
1 TATGATATGCACATGAT
36620027 GTATTCATAA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.35, C:0.11, G:0.21, T:0.33
Consensus pattern (20 bp):
TATGATATGCACATGATATG
Found at i:36620134 original size:24 final size:25
Alignment explanation
Indices: 36620075--36620145 Score: 117
Period size: 24 Copynumber: 2.8 Consensus size: 25
36620065 GGAGGAAGTG
36620075 CAAAAGGGCTTATGCCCCAGTTTATT
1 CAAAAGGGCTT-TGCCCCAGTTTATT
*
36620101 GAAAAGGGCTTTGCCCCAGTTTA-T
1 CAAAAGGGCTTTGCCCCAGTTTATT
36620125 CAAAAGGGCTTTGCCCCAGTT
1 CAAAAGGGCTTTGCCCCAGTT
36620146 GTTAAAAGAG
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
24 21 0.49
25 12 0.28
26 10 0.23
ACGTcount: A:0.25, C:0.24, G:0.23, T:0.28
Consensus pattern (25 bp):
CAAAAGGGCTTTGCCCCAGTTTATT
Found at i:36620158 original size:24 final size:23
Alignment explanation
Indices: 36620075--36620158 Score: 98
Period size: 24 Copynumber: 3.4 Consensus size: 23
36620065 GGAGGAAGTG
36620075 CAAAAGGGCTTATGCCCCAGTTTATT
1 CAAAAGGGCTT-TGCCCCAG-TT-TT
*
36620101 GAAAAGGGCTTTGCCCCAGTTTAT
1 CAAAAGGGCTTTGCCCCAGTTT-T
36620125 CAAAAGGGCTTTGCCCCAGTTGTT
1 CAAAAGGGCTTTGCCCCAGTT-TT
36620149 -AAAAGAGGCT
1 CAAAAG-GGCT
36620159 AGGCCTCTGT
Statistics
Matches: 53, Mismatches: 2, Indels: 8
0.84 0.03 0.13
Matches are distributed among these distances:
23 6 0.11
24 28 0.53
25 9 0.17
26 10 0.19
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.27
Consensus pattern (23 bp):
CAAAAGGGCTTTGCCCCAGTTTT
Found at i:36620398 original size:7 final size:7
Alignment explanation
Indices: 36620386--36620413 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
36620376 GGCCCAGTGT
36620386 TATGAAA
1 TATGAAA
36620393 TATGAAA
1 TATGAAA
36620400 TATGAAA
1 TATGAAA
36620407 TATGAAA
1 TATGAAA
36620414 AGGCTTCGGC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.57, C:0.00, G:0.14, T:0.29
Consensus pattern (7 bp):
TATGAAA
Found at i:36626450 original size:15 final size:16
Alignment explanation
Indices: 36626419--36626460 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
36626409 TAGTAATAAT
*
36626419 AATTAAATT-AAATTA
1 AATTAAATTGCAATTA
36626434 AATTAAATTGCAA-TA
1 AATTAAATTGCAATTA
36626449 AATATAAATTGC
1 AAT-TAAATTGC
36626461 TAAAGTAATA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
15 14 0.58
16 10 0.42
ACGTcount: A:0.55, C:0.05, G:0.05, T:0.36
Consensus pattern (16 bp):
AATTAAATTGCAATTA
Found at i:36628166 original size:49 final size:49
Alignment explanation
Indices: 36628073--36628166 Score: 125
Period size: 49 Copynumber: 1.9 Consensus size: 49
36628063 ACATCAAACT
* * * *
36628073 CGATGCCATGTCATAGACAGGTCTTACACTGACTTTTATTTATCAAGGC
1 CGATGCCATGTCATAGACAAGTCTTACACTGACTCTCATCTATCAAGGC
* * *
36628122 CGATGTCATGTCCTAGACAAGTCTTACACTGGCTCTCATCTATCA
1 CGATGCCATGTCATAGACAAGTCTTACACTGACTCTCATCTATCA
36628167 GTGTCAATGC
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
49 38 1.00
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.32
Consensus pattern (49 bp):
CGATGCCATGTCATAGACAAGTCTTACACTGACTCTCATCTATCAAGGC
Found at i:36628181 original size:49 final size:49
Alignment explanation
Indices: 36628075--36628183 Score: 121
Period size: 49 Copynumber: 2.2 Consensus size: 49
36628065 ATCAAACTCG
* * * * * *
36628075 ATGCCATGTCATAGACAGGTCTTACACTGACTTTTATTTATCAAGGCCG
1 ATGCCATGTCCTAGACAAGTCTTACACTGACTCTCATCTATCAAGGCCA
* * *
36628124 ATGTCATGTCCTAGACAAGTCTTACACTGGCTCTCATCTATC-AGTGTCA
1 ATGCCATGTCCTAGACAAGTCTTACACTGACTCTCATCTATCAAG-GCCA
36628173 ATGCCATGTCC
1 ATGCCATGTCC
36628184 CAGATAGGTC
Statistics
Matches: 49, Mismatches: 10, Indels: 2
0.80 0.16 0.03
Matches are distributed among these distances:
48 2 0.04
49 47 0.96
ACGTcount: A:0.25, C:0.26, G:0.17, T:0.32
Consensus pattern (49 bp):
ATGCCATGTCCTAGACAAGTCTTACACTGACTCTCATCTATCAAGGCCA
Found at i:36628328 original size:46 final size:45
Alignment explanation
Indices: 36628221--36628387 Score: 167
Period size: 46 Copynumber: 3.6 Consensus size: 45
36628211 AAGATGACGC
* * * * *
36628221 CATGTCCCAGACAGGTCTTACACTAGCTTGTATATCTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGC---TCTCTCTCAATGCCGATG
* * *
36628269 CATGTCCTAGACATGTCTTACACTATCTCTCGTCTCAATGCCAATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTC-TCTCAATGCCGATG
* *
36628315 CATGTCCCAGACATGTCTTACACTGGCTCTC-AT-AATGTGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTCTCTCAA--T-GCCGATG
36628361 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
36628388 ACACATATCA
Statistics
Matches: 101, Mismatches: 14, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
43 2 0.02
44 1 0.01
45 3 0.03
46 71 0.70
48 24 0.24
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (45 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTCTCTCAATGCCGATG
Found at i:36637434 original size:16 final size:17
Alignment explanation
Indices: 36637413--36637451 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
36637403 CATATATCAT
* *
36637413 TTAATTACCCATT-TAC
1 TTAATTAACCATTATAA
36637429 TTAATTAACCATTATAA
1 TTAATTAACCATTATAA
36637446 TTAATT
1 TTAATT
36637452 GAAATTTCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 12 0.60
17 8 0.40
ACGTcount: A:0.38, C:0.15, G:0.00, T:0.46
Consensus pattern (17 bp):
TTAATTAACCATTATAA
Found at i:36648141 original size:27 final size:27
Alignment explanation
Indices: 36648104--36648308 Score: 259
Period size: 27 Copynumber: 7.6 Consensus size: 27
36648094 TAAATTGTAC
36648104 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
36648131 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
36648158 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
36648184 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
36648212 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
36648240 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
36648267 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
36648294 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
36648309 GACTCAATAT
Statistics
Matches: 156, Mismatches: 19, Indels: 6
0.86 0.10 0.03
Matches are distributed among these distances:
27 133 0.85
28 23 0.15
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:36648243 original size:109 final size:108
Alignment explanation
Indices: 36648105--36648308 Score: 320
Period size: 109 Copynumber: 1.9 Consensus size: 108
36648095 AAATTGTACA
* *
36648105 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGT
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGATTTGACTACGTAGCACTAAGTGT
36648170 GCGAAATGAATATGAT-GCACTAAGTGTGCGAATTGACCATGCG
66 GCGAAATGAATAT-ATAGCACTAAGTGTGCGAATTGACCATGCG
*
36648213 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGATTTGACTACGTAGCACTAAGTG
** * *
36648278 TGCGAGTTGATTATATAGCACTGAGTGTGCG
65 TGCGAAATGAATATATAGCACTAAGTGTGCG
36648309 GACTCAATAT
Statistics
Matches: 87, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
108 17 0.20
109 70 0.80
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (108 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGATTTGACTACGTAGCACTAAGTGT
GCGAAATGAATATATAGCACTAAGTGTGCGAATTGACCATGCG
Found at i:36658098 original size:82 final size:81
Alignment explanation
Indices: 36657982--36658137 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
36657972 AAATTGTACA
* * * *
36657982 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
36658046 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
36658063 GCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
36658128 TGCGAGTTGA
65 TGCGAATTGA
36658138 TTGTATAGCA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 18 0.28
82 47 0.72
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:36658105 original size:55 final size:52
Alignment explanation
Indices: 36657981--36658134 Score: 175
Period size: 55 Copynumber: 2.9 Consensus size: 52
36657971 TAAATTGTAC
* *
36657981 AGCACTAAGTGTGCG-ATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG
1 AGCACTAAGTGTGCGAATT-GACTATGTGGCACTAAGTGTGCG-AGTGAATATG
* * *
36658034 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTCTAACTATG
1 A-GCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT-GAA-TATG
* * *
36658089 TAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTGTGCGAGT
1 -AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT
36658135 TGATTGTATA
Statistics
Matches: 86, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
53 3 0.03
54 36 0.42
55 46 0.53
56 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (52 bp):
AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGTGAATATG
Found at i:36658139 original size:27 final size:27
Alignment explanation
Indices: 36657982--36658137 Score: 163
Period size: 27 Copynumber: 5.7 Consensus size: 27
36657972 AAATTGTACA
*
36657982 GCACTAAGTGTGCG-ATTCGACTATGTT
1 GCACTAAGTGTGCGAATT-GACTATGTG
* *
36658009 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
* *
36658036 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
* * *
36658063 GCACTAAGTGTGCGAGTCTAACTATGTA
1 GCACTAAGTGTGCGAAT-TGACTATGTG
* * *
36658091 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATTGACTATGTG
*
36658118 GCACTAAGTGTGCGAGTTGA
1 GCACTAAGTGTGCGAATTGA
36658138 TTGTATAGCA
Statistics
Matches: 108, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
27 83 0.77
28 25 0.23
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:36658148 original size:27 final size:27
Alignment explanation
Indices: 36657974--36658158 Score: 101
Period size: 27 Copynumber: 6.8 Consensus size: 27
36657964 GCGGGATTAA
*
36657974 ATTGTACAGCACTAAGTGTGCG-ATTCG
1 ATTGTATAGCACTAAGTGTGCGAATT-G
*
36658001 ACTATGT-T-GCACTAAGTGTGCGAAATG
1 A-T-TGTATAGCACTAAGTGTGCGAATTG
36658028 AATATG-AT-GCACTAAGTGTGCGAATTG
1 -AT-TGTATAGCACTAAGTGTGCGAATTG
*** *** * *
36658055 ACCATGCGGCACTAAGTGTGCGAGTCTA
1 ATTGTATAGCACTAAGTGTGCGAAT-TG
* * * *
36658083 ACTATGTAGCACTAAGTGTGCGATTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*** * *
36658110 ATTACGTGGCACTAAGTGTGCGAGTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*
36658137 ATTGTATAGCACTGAGTGTGCG
1 ATTGTATAGCACTAAGTGTGCG
36658159 GGCTCAATAT
Statistics
Matches: 126, Mismatches: 24, Indels: 16
0.76 0.14 0.10
Matches are distributed among these distances:
26 1 0.01
27 96 0.76
28 26 0.21
29 3 0.02
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (27 bp):
ATTGTATAGCACTAAGTGTGCGAATTG
Found at i:36658149 original size:82 final size:81
Alignment explanation
Indices: 36657974--36658158 Score: 210
Period size: 82 Copynumber: 2.3 Consensus size: 81
36657964 GCGGGATTAA
* * * *
36657974 ATTGTACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCA
1 ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
36658039 CTAAGTGTGCGAATTG
66 CTAAGTGTGCGAATTG
*** * * ** *
36658055 ACCATGCGGCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGG
1 ATTGTACAGCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-G
*
36658119 CACTAAGTGTGCGAGTTG
64 CACTAAGTGTGCGAATTG
* *
36658137 ATTGTATAGCACTGAGTGTGCG
1 ATTGTACAGCACTAAGTGTGCG
36658159 GGCTCAATAT
Statistics
Matches: 82, Mismatches: 20, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
81 21 0.26
82 61 0.74
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
CTAAGTGTGCGAATTG
Found at i:36665993 original size:82 final size:81
Alignment explanation
Indices: 36665877--36666032 Score: 206
Period size: 82 Copynumber: 1.9 Consensus size: 81
36665867 AAATTGTACA
* * * *
36665877 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
36665941 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
* ** *
36665958 GCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTTCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
36666023 TGCGAGTTGA
65 TGCGAATTGA
36666033 TTGTATAGCA
Statistics
Matches: 64, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
81 18 0.28
82 46 0.72
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:36666016 original size:55 final size:52
Alignment explanation
Indices: 36665876--36666029 Score: 173
Period size: 55 Copynumber: 2.9 Consensus size: 52
36665866 TAAATTGTAC
* * *
36665876 AGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG
1 AGCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCG-AGTGAATATG
* * * *
36665929 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTCTAACTATG
1 A-GCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAGT-GAA-TATG
* * *
36665984 TAGCACTAAGTGTTCGATTTGATTACGTGGCACTAAGTGTGCGAGT
1 -AGCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAGT
36666030 TGATTGTATA
Statistics
Matches: 84, Mismatches: 13, Indels: 6
0.82 0.13 0.06
Matches are distributed among these distances:
53 3 0.04
54 38 0.45
55 42 0.50
56 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (52 bp):
AGCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAGTGAATATG
Found at i:36666034 original size:27 final size:27
Alignment explanation
Indices: 36665877--36666032 Score: 154
Period size: 27 Copynumber: 5.7 Consensus size: 27
36665867 AAATTGTACA
*
36665877 GCACTAAGTGTGCG-ATTCGACTATGTT
1 GCACTAAGTGTGCGAATT-GACTATGTG
* *
36665904 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
* *
36665931 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
* * *
36665958 GCACTAAGTGTGCGAGTCTAACTATGTA
1 GCACTAAGTGTGCGAAT-TGACTATGTG
* * * *
36665986 GCACTAAGTGTTCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATTGACTATGTG
*
36666013 GCACTAAGTGTGCGAGTTGA
1 GCACTAAGTGTGCGAATTGA
36666033 TTGTATAGCA
Statistics
Matches: 106, Mismatches: 19, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
27 82 0.77
28 24 0.23
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.29
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:36666043 original size:27 final size:27
Alignment explanation
Indices: 36665869--36666053 Score: 92
Period size: 27 Copynumber: 6.8 Consensus size: 27
36665859 GCGGGATTAA
*
36665869 ATTGTACAGCACTAAGTGTGCG-ATTCG
1 ATTGTATAGCACTAAGTGTGCGAATT-G
*
36665896 ACTATGT-T-GCACTAAGTGTGCGAAATG
1 A-T-TGTATAGCACTAAGTGTGCGAATTG
36665923 AATATG-AT-GCACTAAGTGTGCGAATTG
1 -AT-TGTATAGCACTAAGTGTGCGAATTG
*** *** * *
36665950 ACCATGCGGCACTAAGTGTGCGAGTCTA
1 ATTGTATAGCACTAAGTGTGCGAAT-TG
* * * * *
36665978 ACTATGTAGCACTAAGTGTTCGATTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*** * *
36666005 ATTACGTGGCACTAAGTGTGCGAGTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*
36666032 ATTGTATAGCACTGAGTGTGCG
1 ATTGTATAGCACTAAGTGTGCG
36666054 GGCTCAATAT
Statistics
Matches: 124, Mismatches: 26, Indels: 16
0.75 0.16 0.10
Matches are distributed among these distances:
26 1 0.01
27 95 0.77
28 25 0.20
29 3 0.02
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (27 bp):
ATTGTATAGCACTAAGTGTGCGAATTG
Found at i:36666044 original size:82 final size:81
Alignment explanation
Indices: 36665869--36666053 Score: 201
Period size: 82 Copynumber: 2.3 Consensus size: 81
36665859 GCGGGATTAA
* * * *
36665869 ATTGTACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCA
1 ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
36665934 CTAAGTGTGCGAATTG
66 CTAAGTGTGCGAATTG
*** * * * ** *
36665950 ACCATGCGGCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTTCGATTTGATTACG-TGG
1 ATTGTACAGCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-G
*
36666014 CACTAAGTGTGCGAGTTG
64 CACTAAGTGTGCGAATTG
* *
36666032 ATTGTATAGCACTGAGTGTGCG
1 ATTGTACAGCACTAAGTGTGCG
36666054 GGCTCAATAT
Statistics
Matches: 81, Mismatches: 21, Indels: 3
0.77 0.20 0.03
Matches are distributed among these distances:
81 21 0.26
82 60 0.74
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (81 bp):
ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
CTAAGTGTGCGAATTG
Found at i:36682340 original size:6 final size:6
Alignment explanation
Indices: 36682322--36682387 Score: 55
Period size: 6 Copynumber: 10.8 Consensus size: 6
36682312 AAGAAACATT
* * *
36682322 ATCAGA A-CTAGA ATCAGA ATCAGA ATTAGA ATTAGGTG AT-AGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA
*
36682371 ATCAGA ATCAGT ATCAG
1 ATCAGA ATCAGA ATCAG
36682388 GTAACAGAAT
Statistics
Matches: 51, Mismatches: 4, Indels: 10
0.78 0.06 0.15
Matches are distributed among these distances:
5 3 0.06
6 43 0.84
7 3 0.06
8 2 0.04
ACGTcount: A:0.45, C:0.12, G:0.20, T:0.23
Consensus pattern (6 bp):
ATCAGA
Found at i:36682397 original size:31 final size:31
Alignment explanation
Indices: 36682306--36682397 Score: 89
Period size: 31 Copynumber: 3.0 Consensus size: 31
36682296 TAACCCATTA
* * *
36682306 CAGAATAAGAAACATTATCA-G-AACTAGAAT
1 CAGAATCAGAATCAGTATCAGGTAAC-AGAAT
* * * * *
36682336 CAGAATCAGAATTAGAATTAGGTGATAGAAT
1 CAGAATCAGAATCAGTATCAGGTAACAGAAT
36682367 CAGAATCAGAATCAGTATCAGGTAACAGAAT
1 CAGAATCAGAATCAGTATCAGGTAACAGAAT
36682398 AAAAAATCAG
Statistics
Matches: 47, Mismatches: 13, Indels: 3
0.75 0.21 0.05
Matches are distributed among these distances:
30 14 0.30
31 32 0.68
32 1 0.02
ACGTcount: A:0.48, C:0.12, G:0.18, T:0.22
Consensus pattern (31 bp):
CAGAATCAGAATCAGTATCAGGTAACAGAAT
Found at i:36682638 original size:27 final size:27
Alignment explanation
Indices: 36682548--36682648 Score: 105
Period size: 27 Copynumber: 3.7 Consensus size: 27
36682538 CTCAGTTATT
* * * *
36682548 AGATATTGTGACAGAGTCACCAGATAC
1 AGATATTGTGGCAAAGCCACCAGAAAC
* *
36682575 AGATATTGTAGCAGAGCCACCAG-AAC
1 AGATATTGTGGCAAAGCCACCAGAAAC
* *
36682601 AGATATTTGTGGCATAGCCACCAGAAAG
1 AGATA-TTGTGGCAAAGCCACCAGAAAC
*
36682629 AGATAATGTGGCAAAGCCAC
1 AGATATTGTGGCAAAGCCAC
36682649 TTAACAGAAT
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
26 7 0.11
27 49 0.78
28 7 0.11
ACGTcount: A:0.38, C:0.20, G:0.24, T:0.19
Consensus pattern (27 bp):
AGATATTGTGGCAAAGCCACCAGAAAC
Found at i:36683356 original size:27 final size:27
Alignment explanation
Indices: 36683317--36683574 Score: 363
Period size: 27 Copynumber: 9.6 Consensus size: 27
36683307 TACCCCACCA
* *
36683317 GGTATCTCGGTAATTCCACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
** * *
36683344 GGTATTTTAGTAATTCAACCCTACAAG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
36683371 GGTATTTCGGTAATTTTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
36683398 GGTATTTCGGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* *
36683425 GGTATTTCAGTAATTCTACCCTACAAG
1 GGTATTTCGGTAATTCTACCCTACAGG
36683452 GGTATTTCGGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
** * *
36683479 GGTATTTCAATAATTCTACCCTATAAG
1 GGTATTTCGGTAATTCTACCCTACAGG
36683506 GGTATTTCGGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* * * *
36683533 GGTATTGCGATAATTCCACCCTACAAG
1 GGTATTTCGGTAATTCTACCCTACAGG
36683560 GGTATTTCGGTAATT
1 GGTATTTCGGTAATT
36683575 TTGTAAATCG
Statistics
Matches: 202, Mismatches: 29, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 202 1.00
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.33
Consensus pattern (27 bp):
GGTATTTCGGTAATTCTACCCTACAGG
Found at i:36683588 original size:27 final size:27
Alignment explanation
Indices: 36683558--36683845 Score: 176
Period size: 27 Copynumber: 10.7 Consensus size: 27
36683548 CCACCCTACA
**
36683558 AGGGTATTTCGGTAATTTTGTAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
*** ** **
36683585 AGGGTAAAACGGTAATTTTGTAAATTA
1 AGGGTATTTCGGTAATTTTACAAATCG
*
36683612 AGGGTACTTT-GGTAATTTTACAAGTCG
1 AGGGTA-TTTCGGTAATTTTACAAATCG
** **
36683639 AGGGTATTTCAATAATTTTACAGGTCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* * *
36683666 AGGGTATTTCAGTAATTTCACGAATC-
1 AGGGTATTTCGGTAATTTTACAAATCG
* *
36683692 AGGGATATTTTGGTAATTTTACAAA-CT
1 AGGG-TATTTCGGTAATTTTACAAATCG
* * * *
36683719 AGAAGTATTTTGATAATTTTACAAA-CC
1 AG-GGTATTTCGGTAATTTTACAAATCG
* *
36683746 AGGGGTATTTTGGTAATTTTACAAA-CC
1 A-GGGTATTTCGGTAATTTTACAAATCG
* * *
36683773 AGGGGTATTTTGGTAATTTTATAAA-CA
1 A-GGGTATTTCGGTAATTTTACAAATCG
** *
36683800 ATGGGTATTTTAGTAATTTTACAAA-CT
1 A-GGGTATTTCGGTAATTTTACAAATCG
*
36683827 AGGGGTATTTTGGTAATTT
1 A-GGGTATTTCGGTAATTT
36683846 GGTAAACTAA
Statistics
Matches: 217, Mismatches: 38, Indels: 12
0.81 0.14 0.04
Matches are distributed among these distances:
26 8 0.04
27 207 0.95
28 2 0.01
ACGTcount: A:0.32, C:0.08, G:0.21, T:0.39
Consensus pattern (27 bp):
AGGGTATTTCGGTAATTTTACAAATCG
Found at i:36683727 original size:81 final size:82
Alignment explanation
Indices: 36683619--36683845 Score: 212
Period size: 81 Copynumber: 2.8 Consensus size: 82
36683609 TTAAGGGTAC
* * * ***
36683619 TTTGGTAATTTTAC-AAGTCGAGGGTATTTCAATAATTTTACAGGTC-GAGGGTATTTCAGTAAT
1 TTTGGTAATTTTACAAACTAGAGAGTATTTCAATAATTTTACAAACCAG-GGGTATTTCAGTAAT
* *
36683682 TTCACGAATCAGGGATAT
65 TTCACAAACCAGGGATAT
** **
36683700 TTTGGTAATTTTACAAACTAGA-AGTATTTTGATAATTTTACAAACCAGGGGTATTTTGGTAATT
1 TTTGGTAATTTTACAAACTAGAGAGTATTTCAATAATTTTACAAACCAGGGGTATTTCAGTAATT
* *
36683764 TTACAAACCAGGGGTAT
66 TCACAAACCAGGGATAT
* * * * * **
36683781 TTTGGTAATTTTATAAAC-A-ATGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAAT
1 TTTGGTAATTTTACAAACTAGA-GAGTATTTCAATAATTTTACAAACCAGGGGTATTTCAGTAAT
36683844 TT
65 TT
36683846 GGTAAACTAA
Statistics
Matches: 123, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
79 1 0.01
80 1 0.01
81 115 0.93
82 6 0.05
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (82 bp):
TTTGGTAATTTTACAAACTAGAGAGTATTTCAATAATTTTACAAACCAGGGGTATTTCAGTAATT
TCACAAACCAGGGATAT
Found at i:36683854 original size:27 final size:27
Alignment explanation
Indices: 36683692--36683845 Score: 218
Period size: 27 Copynumber: 5.7 Consensus size: 27
36683682 TTCACGAATC
*
36683692 AGGGATATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACT
** * *
36683719 AGAAGTATTTTGATAATTTTACAAACC
1 AGGGGTATTTTGGTAATTTTACAAACT
*
36683746 AGGGGTATTTTGGTAATTTTACAAACC
1 AGGGGTATTTTGGTAATTTTACAAACT
* *
36683773 AGGGGTATTTTGGTAATTTTATAAACA
1 AGGGGTATTTTGGTAATTTTACAAACT
* *
36683800 ATGGGTATTTTAGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACT
36683827 AGGGGTATTTTGGTAATTT
1 AGGGGTATTTTGGTAATTT
36683846 GGTAAACTAA
Statistics
Matches: 111, Mismatches: 16, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 111 1.00
ACGTcount: A:0.32, C:0.07, G:0.19, T:0.41
Consensus pattern (27 bp):
AGGGGTATTTTGGTAATTTTACAAACT
Found at i:36686583 original size:18 final size:18
Alignment explanation
Indices: 36686560--36686600 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
36686550 GTTTAAACTA
36686560 TTACTGCACTGGTTACTG
1 TTACTGCACTGGTTACTG
* *
36686578 TTACTGCACTGTTTATTG
1 TTACTGCACTGGTTACTG
36686596 TTACT
1 TTACT
36686601 ATAATAGGCC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.17, C:0.20, G:0.17, T:0.46
Consensus pattern (18 bp):
TTACTGCACTGGTTACTG
Found at i:36686671 original size:39 final size:39
Alignment explanation
Indices: 36686625--36686702 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
36686615 CCCAAACACA
36686625 TGACTATTTCTGTATTGAGATGGGCTAAAGCCCAAACTG
1 TGACTATTTCTGTATTGAGATGGGCTAAAGCCCAAACTG
36686664 TGACTATTTCTGTATTGAGATGGGCTAAAGCCCAAACTG
1 TGACTATTTCTGTATTGAGATGGGCTAAAGCCCAAACTG
36686703 ATATTGTCAC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.31
Consensus pattern (39 bp):
TGACTATTTCTGTATTGAGATGGGCTAAAGCCCAAACTG
Found at i:36700850 original size:38 final size:39
Alignment explanation
Indices: 36700799--36700906 Score: 141
Period size: 38 Copynumber: 2.8 Consensus size: 39
36700789 CACCTGCATC
**
36700799 AAGCCTGCTAGGCACTAAGCCTGAATAAA-ACCGGCAGT
1 AAGCCTGCTAGGCACTAAGCCTGAATAAACACCGGCACA
* * *
36700837 AAGCCTGCTAGGCACTAAGCTTG-ATAAACACTGGTACA
1 AAGCCTGCTAGGCACTAAGCCTGAATAAACACCGGCACA
*
36700875 AAGCCTGCTAGGCACTAAGCCTG-ATAATCACC
1 AAGCCTGCTAGGCACTAAGCCTGAATAAACACC
36700907 CAATTTGGAT
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
37 5 0.08
38 56 0.92
ACGTcount: A:0.33, C:0.27, G:0.21, T:0.19
Consensus pattern (39 bp):
AAGCCTGCTAGGCACTAAGCCTGAATAAACACCGGCACA
Found at i:36702057 original size:2 final size:2
Alignment explanation
Indices: 36702050--36702104 Score: 92
Period size: 2 Copynumber: 27.5 Consensus size: 2
36702040 ATTACCAACA
* *
36702050 AC AC AC AC AC AC GC AC AC AC AC AC AC AC AC AC AT AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
36702092 AC AC AC AC AC AC A
1 AC AC AC AC AC AC A
36702105 TATATATATA
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
2 49 1.00
ACGTcount: A:0.49, C:0.47, G:0.02, T:0.02
Consensus pattern (2 bp):
AC
Found at i:36705055 original size:31 final size:31
Alignment explanation
Indices: 36705013--36705122 Score: 193
Period size: 31 Copynumber: 3.5 Consensus size: 31
36705003 CTTGACACAT
*
36705013 ACTGGGCCGAAGCCTTTCCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
* *
36705044 ACTGGGTCGAAGCCTTTTCACAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
36705075 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
36705106 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
36705123 ACTGTAAACG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 74 1.00
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCATATC
Found at i:36705200 original size:41 final size:41
Alignment explanation
Indices: 36705150--36705230 Score: 135
Period size: 41 Copynumber: 2.0 Consensus size: 41
36705140 CCTTAAGCCC
* *
36705150 ATTTTAATATCACATGTAATGTCAATGGATGTATGCAAGCA
1 ATTTCAATATCACATGTAATGTCAATGAATGTATGCAAGCA
*
36705191 ATTTCAATATCACATGTAATTTCAATGAATGTATGCAAGC
1 ATTTCAATATCACATGTAATGTCAATGAATGTATGCAAGC
36705231 CCATTTGGGA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
41 37 1.00
ACGTcount: A:0.37, C:0.14, G:0.15, T:0.35
Consensus pattern (41 bp):
ATTTCAATATCACATGTAATGTCAATGAATGTATGCAAGCA
Found at i:36705411 original size:25 final size:23
Alignment explanation
Indices: 36705356--36705427 Score: 90
Period size: 25 Copynumber: 3.0 Consensus size: 23
36705346 ACTTTATCAT
**
36705356 ATAACTGGAGGCCTAGCCTCTTTTA
1 ATAACTGG-GGCAAAGCC-CTTTTA
36705381 ATAACTGGGGCAAAGCCCTTTCTA
1 ATAACTGGGGCAAAGCCCTTT-TA
36705405 ATAAACTGGGGCAAAGCCCTTTT
1 AT-AACTGGGGCAAAGCCCTTTT
36705428 CGGTAAACTA
Statistics
Matches: 43, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
23 4 0.09
24 12 0.28
25 27 0.63
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.28
Consensus pattern (23 bp):
ATAACTGGGGCAAAGCCCTTTTA
Found at i:36706450 original size:29 final size:30
Alignment explanation
Indices: 36706378--36706489 Score: 110
Period size: 27 Copynumber: 3.9 Consensus size: 30
36706368 TGGTAAATCT
*
36706378 ACAAACCAAGGGTATTTC-AGTAATTTTGT-
1 ACAAATCAAGGGTATTTCTA-TAATTTTGTA
* *
36706407 --AAACCAATGGTATTTCTATAATTTT-TA
1 ACAAATCAAGGGTATTTCTATAATTTTGTA
36706434 A-AAAGTCAAGGGTATTTCTATAATTTTGTA
1 ACAAA-TCAAGGGTATTTCTATAATTTTGTA
* **
36706464 ACAAATTAAGGGTATTTGGATAATTT
1 ACAAATCAAGGGTATTTCTATAATTT
36706490 CACAAACTAG
Statistics
Matches: 71, Mismatches: 6, Indels: 11
0.81 0.07 0.12
Matches are distributed among these distances:
26 1 0.01
27 22 0.31
28 4 0.06
29 20 0.28
30 21 0.30
31 3 0.04
ACGTcount: A:0.37, C:0.09, G:0.15, T:0.39
Consensus pattern (30 bp):
ACAAATCAAGGGTATTTCTATAATTTTGTA
Found at i:36706477 original size:30 final size:29
Alignment explanation
Indices: 36706415--36706489 Score: 98
Period size: 30 Copynumber: 2.6 Consensus size: 29
36706405 GTAAACCAAT
36706415 GGTATTTCTATAATTTTTAAAAAGTCAAG
1 GGTATTTCTATAATTTTTAAAAAGTCAAG
*
36706444 GGTATTTCTATAATTTTGTAACAAA-TTAAG
1 GGTATTTCTATAATTTT-TAA-AAAGTCAAG
**
36706474 GGTATTTGGATAATTT
1 GGTATTTCTATAATTT
36706490 CACAAACTAG
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
29 17 0.41
30 21 0.51
31 3 0.07
ACGTcount: A:0.35, C:0.05, G:0.16, T:0.44
Consensus pattern (29 bp):
GGTATTTCTATAATTTTTAAAAAGTCAAG
Found at i:36706588 original size:27 final size:27
Alignment explanation
Indices: 36706473--36706569 Score: 160
Period size: 27 Copynumber: 3.6 Consensus size: 27
36706463 AACAAATTAA
* *
36706473 GGGTA-TTTGGATAATTTCACAAACTAG
1 GGGTATTTTGG-TAATTTTATAAACTAG
36706500 GGGTATTTTGGTAATTTTATAAACTAG
1 GGGTATTTTGGTAATTTTATAAACTAG
36706527 GGGTATTTTGGTAATTTTATAAACTAG
1 GGGTATTTTGGTAATTTTATAAACTAG
36706554 GGGTATTTTGGTAATT
1 GGGTATTTTGGTAATT
36706570 CTATCCTATA
Statistics
Matches: 67, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
27 62 0.93
28 5 0.07
ACGTcount: A:0.29, C:0.05, G:0.24, T:0.42
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTATAAACTAG
Found at i:36706596 original size:54 final size:54
Alignment explanation
Indices: 36706473--36706602 Score: 163
Period size: 54 Copynumber: 2.4 Consensus size: 54
36706463 AACAAATTAA
* *
36706473 GGGTATTTGGATAATTTCACAAACTAGGGGTATTTTGGTAATTTTATAAACTAG
1 GGGTATTTCGATAATTTCACAAACTAGGGGTATTTTGGTAATTCTATAAACTAG
* * * * **
36706527 GGGTATTTTGGTAATTTTATAAACTAGGGGTATTTTGGTAATTCTATCCTA-TAG
1 GGGTATTTCGATAATTTCACAAACTAGGGGTATTTTGGTAATTCTAT-AAACTAG
*
36706581 GGGTATTTCAATAATTTCACAA
1 GGGTATTTCGATAATTTCACAA
36706603 TCGAGGGTAA
Statistics
Matches: 63, Mismatches: 12, Indels: 2
0.82 0.16 0.03
Matches are distributed among these distances:
54 62 0.98
55 1 0.02
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.41
Consensus pattern (54 bp):
GGGTATTTCGATAATTTCACAAACTAGGGGTATTTTGGTAATTCTATAAACTAG
Found at i:36706635 original size:27 final size:27
Alignment explanation
Indices: 36706601--36706692 Score: 114
Period size: 27 Copynumber: 3.4 Consensus size: 27
36706591 ATAATTTCAC
36706601 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGATAATTTTGTA
* *
36706628 AA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAACGATAATTTTGTA
* * * *
36706655 AATCGAGGGTAAAACAAAAATTCTATA
1 AATCGAGGGTAAAACGATAATTTTGTA
36706682 AATCGAGGGTA
1 AATCGAGGGTA
36706693 CTTTGGTAAT
Statistics
Matches: 55, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
26 1 0.02
27 53 0.96
28 1 0.02
ACGTcount: A:0.42, C:0.08, G:0.23, T:0.27
Consensus pattern (27 bp):
AATCGAGGGTAAAACGATAATTTTGTA
Found at i:36706715 original size:54 final size:53
Alignment explanation
Indices: 36706592--36706717 Score: 130
Period size: 54 Copynumber: 2.3 Consensus size: 53
36706582 GGTATTTCAA
* * * * *
36706592 TAATTTCACAATCGAGGGTAAAACGATAATTTTGTAAACTGAGGGTAAAATGG
1 TAATTTTACAATCGAGGGTAAAACAAAAATTCTATAAACTGAGGGTAAAATGG
***
36706645 TAATTTTGTA-AATCGAGGGTAAAACAAAAATTCTATAAA-TCGAGGGTACTTTGG
1 TAA-TTT-TACAATCGAGGGTAAAACAAAAATTCTATAAACT-GAGGGTAAAATGG
36706699 TAATTTTACAAGTCGAGGG
1 TAATTTTACAA-TCGAGGG
36706718 CATTTCAATA
Statistics
Matches: 60, Mismatches: 8, Indels: 9
0.78 0.10 0.12
Matches are distributed among these distances:
52 2 0.03
53 9 0.15
54 48 0.80
55 1 0.02
ACGTcount: A:0.38, C:0.10, G:0.22, T:0.30
Consensus pattern (53 bp):
TAATTTTACAATCGAGGGTAAAACAAAAATTCTATAAACTGAGGGTAAAATGG
Found at i:36718272 original size:11 final size:11
Alignment explanation
Indices: 36718246--36718305 Score: 81
Period size: 11 Copynumber: 5.7 Consensus size: 11
36718236 ATTTTGATAT
*
36718246 ACATGATTTG-
1 ACATGATATGC
36718256 ACATGATATGC
1 ACATGATATGC
36718267 ACATGATATGC
1 ACATGATATGC
36718278 ACATGATATG-
1 ACATGATATGC
*
36718288 -TATGATATGC
1 ACATGATATGC
36718298 ACATGATA
1 ACATGATA
36718306 AATTCATATA
Statistics
Matches: 44, Mismatches: 3, Indels: 5
0.85 0.06 0.10
Matches are distributed among these distances:
9 8 0.18
10 9 0.20
11 27 0.61
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.32
Consensus pattern (11 bp):
ACATGATATGC
Found at i:36718381 original size:25 final size:25
Alignment explanation
Indices: 36718353--36718447 Score: 154
Period size: 25 Copynumber: 3.8 Consensus size: 25
36718343 GAGGAAGTGC
* *
36718353 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTATCG
*
36718378 AAAAGGGCTTTGCCCCAATTTATCG
1 AAAAGGGCTTTGCCCCAGTTTATCG
36718403 AAAAGGGCTTTGCCCCAGTTTATCG
1 AAAAGGGCTTTGCCCCAGTTTATCG
*
36718428 AAAAGGGCTTTGCCCTAGTT
1 AAAAGGGCTTTGCCCCAGTT
36718448 ATTAAAAGAG
Statistics
Matches: 65, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 65 1.00
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCG
Found at i:36718703 original size:31 final size:31
Alignment explanation
Indices: 36718666--36718750 Score: 138
Period size: 31 Copynumber: 2.8 Consensus size: 31
36718656 TCGTTTGCAG
*
36718666 TAAAGGCTTCGGCCTAGTGATATGAATAATGA
1 TAAAGGCTTCGGCCCAGTGATATGAATAAT-A
36718698 -AAAGGCTTCGGCCCAGTGATATGAATAATA
1 TAAAGGCTTCGGCCCAGTGATATGAATAATA
36718728 TAAAGGCTTCGGCCCAGT-ATATG
1 TAAAGGCTTCGGCCCAGTGATATG
36718751 CTGAGATTGA
Statistics
Matches: 51, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
30 6 0.12
31 45 0.88
ACGTcount: A:0.33, C:0.16, G:0.25, T:0.26
Consensus pattern (31 bp):
TAAAGGCTTCGGCCCAGTGATATGAATAATA
Found at i:36729970 original size:27 final size:27
Alignment explanation
Indices: 36729932--36729986 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
36729922 AACCCAAGAG
36729932 ATAGCCAAATTGGTAATTTTTTTTATC
1 ATAGCCAAATTGGTAATTTTTTTTATC
*
36729959 ATAGTCAAATTGGTAATTTTTTTTATC
1 ATAGCCAAATTGGTAATTTTTTTTATC
36729986 A
1 A
36729987 AGTTAATTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.31, C:0.09, G:0.11, T:0.49
Consensus pattern (27 bp):
ATAGCCAAATTGGTAATTTTTTTTATC
Found at i:36730342 original size:142 final size:137
Alignment explanation
Indices: 36730052--36730338 Score: 367
Period size: 142 Copynumber: 2.0 Consensus size: 137
36730042 AAATTCAAAT
* * * *
36730052 ATAAATTGTTTATAAACTAAATTTGTAATAGCCCAAAATTCAGTGAAATCGGAACAATGGTCTCG
1 ATAAATTATTTATAAACTAAATTTGTAACAACCCAAAATTCAGTGAAATCAGAACAATGGTCTCG
* *
36730117 GGACCACAAATCCAAATCGAAAAATAATTTTTTTTATTTTATGGTCTGTATTATTATAGACATGT
66 GGACCACAAATCCAAACCAAAAAATAATTTTTTTTATTTTATGGTCTGTATTATTATAGACATGT
36730182 CATGTGAAAAA
131 CATGTG----A
* * *
36730193 TATAAATTATTTATAAACTAAATTTGTAACAACCCAAATTTTAGTGAAATCAGAACAGTGGTCTC
1 -ATAAATTATTTATAAACTAAATTTGTAACAACCCAAAATTCAGTGAAATCAGAACAATGGTCTC
* *
36730258 GGGACCACAACTCCAAGCCAAAAAATAAAATTTATTTTATTTTATTTTATGGTCTGTATTATTAT
65 GGGACCACAAATCCAAACCAAAAAAT---A---ATTTT-TTTTATTTTATGGTCTGTATTATTAT
36730323 AGACATGTCATGTGA
123 AGACATGTCATGTGA
36730338 A
1 A
36730339 AATTTGATAA
Statistics
Matches: 127, Mismatches: 11, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
142 79 0.62
144 1 0.01
145 2 0.02
148 5 0.04
149 40 0.31
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.35
Consensus pattern (137 bp):
ATAAATTATTTATAAACTAAATTTGTAACAACCCAAAATTCAGTGAAATCAGAACAATGGTCTCG
GGACCACAAATCCAAACCAAAAAATAATTTTTTTTATTTTATGGTCTGTATTATTATAGACATGT
CATGTGA
Found at i:36738453 original size:64 final size:64
Alignment explanation
Indices: 36738374--36738504 Score: 253
Period size: 64 Copynumber: 2.0 Consensus size: 64
36738364 CAATTGATCA
36738374 AAGCTTTTTTGGCACTTTTCGGACCATTCAAACTTCACATCTTTCTGAAGCAGTTTCGTTAATG
1 AAGCTTTTTTGGCACTTTTCGGACCATTCAAACTTCACATCTTTCTGAAGCAGTTTCGTTAATG
*
36738438 AAGCTTTTTTTGCACTTTTCGGACCATTCAAACTTCACATCTTTCTGAAGCAGTTTCGTTAATG
1 AAGCTTTTTTGGCACTTTTCGGACCATTCAAACTTCACATCTTTCTGAAGCAGTTTCGTTAATG
36738502 AAG
1 AAG
36738505 TTACAATCAT
Statistics
Matches: 66, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
64 66 1.00
ACGTcount: A:0.24, C:0.21, G:0.15, T:0.39
Consensus pattern (64 bp):
AAGCTTTTTTGGCACTTTTCGGACCATTCAAACTTCACATCTTTCTGAAGCAGTTTCGTTAATG
Found at i:36742797 original size:40 final size:40
Alignment explanation
Indices: 36742742--36742999 Score: 412
Period size: 40 Copynumber: 6.5 Consensus size: 40
36742732 CGGATGATAA
* *
36742742 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGCGCGAGTTACTATAT
* *
36742782 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGCGCGAGTTACTATAT
36742822 CCGGGCTAAGTCCCGAAGGCATTTGCGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGCGCGAGTTACTATAT
36742862 CCGGGCTAAGTCCCGAAGGCATTTGCGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGCGCGAGTTACTATAT
*
36742902 CCGGGCTAAGTCCCGAAGGCATTTGCGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGCGCGAGTTACTATAT
* *
36742942 CCGGGCTAAGTCCCGAAGGCATTTGAGCAAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGCGCGAGTTA-CTATAT
* *
36742982 CC-GGCTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
36743000 TACTTGGTTT
Statistics
Matches: 207, Mismatches: 10, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
39 16 0.08
40 191 0.92
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGCGCGAGTTACTATAT
Found at i:36747934 original size:7 final size:8
Alignment explanation
Indices: 36747909--36747934 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
36747899 TGAATTGGTG
36747909 AAAGCCAA
1 AAAGCCAA
36747917 AAAGCCAA
1 AAAGCCAA
36747925 AAAGCCAA
1 AAAGCCAA
36747933 AA
1 AA
36747935 CTTTGGCATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.65, C:0.23, G:0.12, T:0.00
Consensus pattern (8 bp):
AAAGCCAA
Found at i:36748947 original size:27 final size:27
Alignment explanation
Indices: 36748916--36748967 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
36748906 CATCTGATAT
*
36748916 TGATTCT-GTATTGGGCTTAGGCCCACC
1 TGATTCTAGTAATGGGC-TAGGCCCACC
*
36748943 TGATTCTATTAATGGGCTAGGCCCA
1 TGATTCTAGTAATGGGCTAGGCCCA
36748968 ACTGTTACTG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 15 0.68
28 7 0.32
ACGTcount: A:0.19, C:0.23, G:0.25, T:0.33
Consensus pattern (27 bp):
TGATTCTAGTAATGGGCTAGGCCCACC
Found at i:36752347 original size:9 final size:9
Alignment explanation
Indices: 36752333--36752522 Score: 107
Period size: 9 Copynumber: 20.6 Consensus size: 9
36752323 TATTTAAGTA
36752333 TTATGTAAG
1 TTATGTAAG
36752342 TTATGTAAG
1 TTATGTAAG
*
36752351 TTATGATATG
1 TTATG-TAAG
* * *
36752361 ATATAT-AT
1 TTATGTAAG
*
36752369 TTATGTAAA
1 TTATGTAAG
* *
36752378 TTATAT-AT
1 TTATGTAAG
*
36752386 TTATCTAAG
1 TTATGTAAG
*
36752395 TTATATAAG
1 TTATGTAAG
36752404 TTATGTAAG
1 TTATGTAAG
*
36752413 TTATGTAAA
1 TTATGTAAG
*
36752422 TTATGATATAAAA
1 TTATG---T-AAG
*
36752435 TATATTTAAG
1 T-TATGTAAG
36752445 TATTATGTAAG
1 --TTATGTAAG
36752456 TTATGTAAG
1 TTATGTAAG
* *
36752465 TTATAT-AT
1 TTATGTAAG
*
36752473 TTATCTAAG
1 TTATGTAAG
*
36752482 TTATATAAG
1 TTATGTAAG
*
36752491 TTATGTACG
1 TTATGTAAG
*
36752500 TTTTGTAAG
1 TTATGTAAG
* *
36752509 TTATATAAA
1 TTATGTAAG
36752518 TTATG
1 TTATG
36752523 ATATCAAATA
Statistics
Matches: 139, Mismatches: 31, Indels: 22
0.72 0.16 0.11
Matches are distributed among these distances:
8 16 0.12
9 98 0.71
10 8 0.06
11 8 0.06
12 2 0.01
13 4 0.03
14 3 0.02
ACGTcount: A:0.38, C:0.02, G:0.13, T:0.47
Consensus pattern (9 bp):
TTATGTAAG
Found at i:36752415 original size:71 final size:69
Alignment explanation
Indices: 36752333--36752495 Score: 202
Period size: 71 Copynumber: 2.3 Consensus size: 69
36752323 TATTTAAGTA
* * * *
36752333 TTATGTAAGTTATGTAAGTTATGATATGATATATATTTATGTAAATTATAT-ATTTATCTAAGTT
1 TTATGTAAGTTATGTAAGTTATGATATAAAATATATTTAAGT--ATTATATAAGTTATCTAAGTT
36752397 ATATAAG
64 ATAT-AG
* * *
36752404 TTATGTAAGTTATGTAAATTATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTAT
1 TTATGTAAGTTATGTAAGTTATGATATAAAATATATTTAAGTATTATATAAGTTATCTAAGTTAT
*
36752469 ATAT
66 ATAG
* *
36752473 TTATCTAAGTTATATAAGTTATG
1 TTATGTAAGTTATGTAAGTTATG
36752496 TACGTTTTGT
Statistics
Matches: 80, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
69 27 0.34
70 15 0.19
71 38 0.47
ACGTcount: A:0.39, C:0.01, G:0.13, T:0.47
Consensus pattern (69 bp):
TTATGTAAGTTATGTAAGTTATGATATAAAATATATTTAAGTATTATATAAGTTATCTAAGTTAT
ATAG
Found at i:36752471 original size:87 final size:90
Alignment explanation
Indices: 36752369--36752553 Score: 259
Period size: 96 Copynumber: 2.0 Consensus size: 90
36752359 TGATATATAT
*
36752369 TTATGTAAATTATATATTTATCTAAGTTATATAAG-T-TA-TGTAAGTTATGTAAATTATGATAT
1 TTATGTAAATTATATATTTATCTAAGTTATATAAGTTGTATTGTAAGTTATATAAATTATGATAT
36752431 AAAATATATTTAAGTATTATGTAAG
66 AAAATATATTTAAGTATTATGTAAG
*
36752456 TTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATGTACGTTTTGTAAGTTATATAAATTA
1 TTATGTAAATTATATATTTATCTAAGTTATATAAG-T-TGTA----TTGTAAGTTATATAAATTA
* *
36752521 TGATATCAAATATATTTATGTATTATGTAAG
60 TGATATAAAATATATTTAAGTATTATGTAAG
36752552 TT
1 TT
36752554 TTTTATTTCA
Statistics
Matches: 85, Mismatches: 4, Indels: 9
0.87 0.04 0.09
Matches are distributed among these distances:
87 34 0.40
90 1 0.01
91 2 0.02
96 48 0.56
ACGTcount: A:0.38, C:0.02, G:0.12, T:0.48
Consensus pattern (90 bp):
TTATGTAAATTATATATTTATCTAAGTTATATAAGTTGTATTGTAAGTTATATAAATTATGATAT
AAAATATATTTAAGTATTATGTAAG
Found at i:36752509 original size:114 final size:114
Alignment explanation
Indices: 36752309--36752522 Score: 290
Period size: 114 Copynumber: 1.9 Consensus size: 114
36752299 ACTAGTTATG
* * * *
36752309 TATGATATGATATATATTTAAGTATTATGTAAGTTATGTAAGTTATGATATGATATATATTTATG
1 TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTATGATATGATATATAGTTATA
*
36752374 TAAATTATATATTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAAT
66 TAAATTATATATTTATCTAAGTTATATAAATTATGTAAGTTATGTAAAT
* *
36752423 TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTAT-ATAT-TTATCTAAGTTAT
1 TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTATGATATGATATAT-AGTTAT
* * *
36752486 ATAAGTTATGTACGTTT-TGTAAGTTATATAAATTATG
65 ATAAATTATATA--TTTATCTAAGTTATATAAATTATG
36752523 ATATCAAATA
Statistics
Matches: 87, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
112 4 0.05
113 18 0.21
114 62 0.71
115 3 0.03
ACGTcount: A:0.38, C:0.01, G:0.13, T:0.47
Consensus pattern (114 bp):
TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTATGATATGATATATAGTTATA
TAAATTATATATTTATCTAAGTTATATAAATTATGTAAGTTATGTAAAT
Found at i:36752561 original size:87 final size:87
Alignment explanation
Indices: 36752369--36752553 Score: 234
Period size: 87 Copynumber: 2.1 Consensus size: 87
36752359 TGATATATAT
*
36752369 TTATGTAAATTATATATTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAATTATGATATAAA
1 TTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAATTATGATATAAA
** *
36752434 ATATATTTAAGTATTATGTAAG
66 ATATATCAAAATATTATGTAAG
* * *
36752456 TTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATGTACGTTTTGTAAGTTAT-ATA-AAT
1 TTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAATTATGATATAA-
*
36752519 TATGATATCAAATATATTTATGT-A-
65 AAT-ATATCAAA-ATA-TTATGTAAG
36752543 TTATGTAAGTT
1 TTATGTAAGTT
36752554 TTTTATTTCA
Statistics
Matches: 86, Mismatches: 8, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
85 2 0.02
86 5 0.06
87 70 0.81
88 3 0.03
89 6 0.07
ACGTcount: A:0.38, C:0.02, G:0.12, T:0.48
Consensus pattern (87 bp):
TTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAATTATGATATAAA
ATATATCAAAATATTATGTAAG
Found at i:36752647 original size:15 final size:15
Alignment explanation
Indices: 36752627--36752656 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
36752617 AAGTAGCGGG
36752627 ATTAAATAATATTTA
1 ATTAAATAATATTTA
36752642 ATTAAATAATATTTA
1 ATTAAATAATATTTA
36752657 TAAAAATTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (15 bp):
ATTAAATAATATTTA
Found at i:36752879 original size:23 final size:23
Alignment explanation
Indices: 36752853--36752951 Score: 62
Period size: 29 Copynumber: 4.2 Consensus size: 23
36752843 ATTTGAATAT
36752853 AATAATATAAAAAAAGAATCGTA
1 AATAATATAAAAAAAGAATCGTA
** * *
36752876 AATAA-A-AAAATCA-AA-CATT
1 AATAATATAAAAAAAGAATCGTA
* *
36752895 ATTAATATAAAAAATAGTAATTTGAATA
1 AATAATATAAAAAA-AG-AA-TCG--TA
36752923 TAATAATATAAAAAAAGAATCGTA
1 -AATAATATAAAAAAAGAATCGTA
36752947 AATAA
1 AATAA
36752952 AAAAATCAAA
Statistics
Matches: 54, Mismatches: 12, Indels: 20
0.63 0.14 0.23
Matches are distributed among these distances:
19 6 0.11
20 3 0.06
21 9 0.17
22 2 0.04
23 10 0.19
24 4 0.07
26 2 0.04
27 2 0.04
28 3 0.06
29 13 0.24
ACGTcount: A:0.64, C:0.04, G:0.06, T:0.26
Consensus pattern (23 bp):
AATAATATAAAAAAAGAATCGTA
Found at i:36752907 original size:71 final size:71
Alignment explanation
Indices: 36752784--36753017 Score: 452
Period size: 71 Copynumber: 3.3 Consensus size: 71
36752774 AAGTACATAT
36752784 TAATATAAAAAAAGAATCGT-AATAAAAAAATCAAACATTATTAATATAAAAAAATAGTAATTTG
1 TAATATAAAAAAAGAATCGTAAATAAAAAAATCAAACATTATTAATAT-AAAAAATAGTAATTTG
36752848 AATATAA
65 AATATAA
36752855 TAATATAAAAAAAGAATCGTAAATAAAAAAATCAAACATTATTAATATAAAAAATAGTAATTTGA
1 TAATATAAAAAAAGAATCGTAAATAAAAAAATCAAACATTATTAATATAAAAAATAGTAATTTGA
36752920 ATATAA
66 ATATAA
36752926 TAATATAAAAAAAGAATCGTAAATAAAAAAATCAAACATTATTAATATAAAAAATAGTAATTTGA
1 TAATATAAAAAAAGAATCGTAAATAAAAAAATCAAACATTATTAATATAAAAAATAGTAATTTGA
36752991 ATATAA
66 ATATAA
36752997 TAATATAAAAAAAGAATCGTA
1 TAATATAAAAAAAGAATCGTA
36753018 GTTTAATTTT
Statistics
Matches: 162, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
71 135 0.83
72 27 0.17
ACGTcount: A:0.62, C:0.04, G:0.06, T:0.28
Consensus pattern (71 bp):
TAATATAAAAAAAGAATCGTAAATAAAAAAATCAAACATTATTAATATAAAAAATAGTAATTTGA
ATATAA
Found at i:36753745 original size:274 final size:275
Alignment explanation
Indices: 36752953--36754046 Score: 2120
Period size: 275 Copynumber: 4.0 Consensus size: 275
36752943 CGTAAATAAA
36752953 AAAATCAAACATTATTAATAT-AAAAAATAGTAATTTGAATATAATAATATAAAAAAAGAATCGT
1 AAAATCAAACATTATTAATATAAAAAAATAGTAATTTGAATATAATAATATAAAAAAAGAATCGT
*
36753017 AGTTTAATTTTTATAAGTAAATTAGAAATAAATATTCAATAGTAAATGAGCTCGATAGAACTATT
66 AGTTTAATTTTTATAAGTAAATTGGAAATAAATATTCAATAGTAAATGAGCTCGATAGAACTATT
36753082 TTCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCA
131 TTCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCA
*
36753147 TTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATGTACTTTGAATCTTTA
196 TTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTA
36753212 AAATATTTAAATATT
261 AAATATTTAAATATT
*
36753227 AAAATCAAACATTATTAATATAAAAAAATAGTAATTTGAATATAATAATATAAAAAATGAATCGT
1 AAAATCAAACATTATTAATATAAAAAAATAGTAATTTGAATATAATAATATAAAAAAAGAATCGT
36753292 AGTTTAATTTTTATAAGTAAATTGGAAATAAATATTCAATAGTAAATGAGCTCGATAGAACTATT
66 AGTTTAATTTTTATAAGTAAATTGGAAATAAATATTCAATAGTAAATGAGCTCGATAGAACTATT
*
36753357 TTCAAGTTTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCA
131 TTCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCA
36753422 TTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTA
196 TTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTA
36753487 AAATATTTAAATATT
261 AAATATTTAAATATT
36753502 AAAATCAAACATTATTAATATAAAAAAATAGTAATTTGAATATAATAATAT-AAAAAAGAATCGT
1 AAAATCAAACATTATTAATATAAAAAAATAGTAATTTGAATATAATAATATAAAAAAAGAATCGT
36753566 AGTTTAATTTTTATAAGTAAATTGGAAATAAATATTCAATAGTAAATGAGCTCGATAGAACTATT
66 AGTTTAATTTTTATAAGTAAATTGGAAATAAATATTCAATAGTAAATGAGCTCGATAGAACTATT
36753631 TTCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCA
131 TTCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCA
*
36753696 TTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATTCTTTGAATCTTTA
196 TTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTA
36753761 AAATATTTAAATATT
261 AAATATTTAAATATT
36753776 AAAATCAAACATTATTAATATAAAAAAATAGTAATTTGAATATAATAATATAAAAAAAGAATCGT
1 AAAATCAAACATTATTAATATAAAAAAATAGTAATTTGAATATAATAATATAAAAAAAGAATCGT
*
36753841 AGTTTAATTTTTATAAGTAAATTGGAAATAAATATTCAATAGTAAATGAGATCGATAGAACTATT
66 AGTTTAATTTTTATAAGTAAATTGGAAATAAATATTCAATAGTAAATGAGCTCGATAGAACTATT
36753906 TTCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCA
131 TTCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCA
36753971 TTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTA
196 TTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTA
36754036 AAATATTTAAA
261 AAATATTTAAA
36754047 ATAAGGTTGG
Statistics
Matches: 809, Mismatches: 9, Indels: 3
0.99 0.01 0.00
Matches are distributed among these distances:
274 292 0.36
275 517 0.64
ACGTcount: A:0.39, C:0.12, G:0.13, T:0.36
Consensus pattern (275 bp):
AAAATCAAACATTATTAATATAAAAAAATAGTAATTTGAATATAATAATATAAAAAAAGAATCGT
AGTTTAATTTTTATAAGTAAATTGGAAATAAATATTCAATAGTAAATGAGCTCGATAGAACTATT
TTCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCA
TTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTA
AAATATTTAAATATT
Found at i:36753991 original size:549 final size:549
Alignment explanation
Indices: 36752953--36754046 Score: 2118
Period size: 549 Copynumber: 2.0 Consensus size: 549
36752943 CGTAAATAAA
36752953 AAAATCAAACATTATTAATATAAAAAATAGTAATTTGAATATAATAATATAAAAAAAGAATCGTA
1 AAAATCAAACATTATTAATATAAAAAATAGTAATTTGAATATAATAATATAAAAAAAGAATCGTA
36753018 GTTTAATTTTTATAAGTAAATTAGAAATAAATATTCAATAGTAAATGAGCTCGATAGAACTATTT
66 GTTTAATTTTTATAAGTAAATTAGAAATAAATATTCAATAGTAAATGAGCTCGATAGAACTATTT
36753083 TCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCAT
131 TCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCAT
*
36753148 TATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATGTACTTTGAATCTTTAA
196 TATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAA
36753213 AATATTTAAATATTAAAATCAAACATTATTAATATAAAAAAATAGTAATTTGAATATAATAATAT
261 AATATTTAAATATTAAAATCAAACATTATTAATATAAAAAAATAGTAATTTGAATATAATAATAT
* *
36753278 AAAAAATGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATATTCAATAGTAAATGAGC
326 AAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATATTCAATAGTAAATGAGA
*
36753343 TCGATAGAACTATTTTCAAGTTTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACAC
391 TCGATAGAACTATTTTCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACAC
36753408 CTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATAT
456 CTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATAT
36753473 ACTTTGAATCTTTAAAATATTTAAATATT
521 ACTTTGAATCTTTAAAATATTTAAATATT
36753502 AAAATCAAACATTATTAATATAAAAAAATAGTAATTTGAATATAATAATAT-AAAAAAGAATCGT
1 AAAATCAAACATTATTAATAT-AAAAAATAGTAATTTGAATATAATAATATAAAAAAAGAATCGT
*
36753566 AGTTTAATTTTTATAAGTAAATTGGAAATAAATATTCAATAGTAAATGAGCTCGATAGAACTATT
65 AGTTTAATTTTTATAAGTAAATTAGAAATAAATATTCAATAGTAAATGAGCTCGATAGAACTATT
36753631 TTCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCA
130 TTCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCA
*
36753696 TTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATTCTTTGAATCTTTA
195 TTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTA
36753761 AAATATTTAAATATTAAAATCAAACATTATTAATATAAAAAAATAGTAATTTGAATATAATAATA
260 AAATATTTAAATATTAAAATCAAACATTATTAATATAAAAAAATAGTAATTTGAATATAATAATA
36753826 TAAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATATTCAATAGTAAATGAG
325 TAAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATATTCAATAGTAAATGAG
36753891 ATCGATAGAACTATTTTCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACA
390 ATCGATAGAACTATTTTCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACA
36753956 CCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATA
455 CCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATA
36754021 TACTTTGAATCTTTAAAATATTTAAA
520 TACTTTGAATCTTTAAAATATTTAAA
36754047 ATAAGGTTGG
Statistics
Matches: 538, Mismatches: 6, Indels: 2
0.99 0.01 0.00
Matches are distributed among these distances:
549 509 0.95
550 29 0.05
ACGTcount: A:0.39, C:0.12, G:0.13, T:0.36
Consensus pattern (549 bp):
AAAATCAAACATTATTAATATAAAAAATAGTAATTTGAATATAATAATATAAAAAAAGAATCGTA
GTTTAATTTTTATAAGTAAATTAGAAATAAATATTCAATAGTAAATGAGCTCGATAGAACTATTT
TCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCAT
TATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAA
AATATTTAAATATTAAAATCAAACATTATTAATATAAAAAAATAGTAATTTGAATATAATAATAT
AAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATATTCAATAGTAAATGAGA
TCGATAGAACTATTTTCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACAC
CTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATAT
ACTTTGAATCTTTAAAATATTTAAATATT
Found at i:36754328 original size:15 final size:15
Alignment explanation
Indices: 36754308--36754336 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
36754298 AGAATTTTGA
36754308 AATAAAACGTACCTT
1 AATAAAACGTACCTT
36754323 AATAAAACGTACCT
1 AATAAAACGTACCT
36754337 GGTCTACTCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.48, C:0.21, G:0.07, T:0.24
Consensus pattern (15 bp):
AATAAAACGTACCTT
Found at i:36754845 original size:183 final size:183
Alignment explanation
Indices: 36754537--36755088 Score: 1034
Period size: 183 Copynumber: 3.0 Consensus size: 183
36754527 CCTAGAACAG
36754537 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
1 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
36754602 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGG
66 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGG
36754667 AGCAGGAATCAGTAACTGAAATACATACAACATTAATTCACTAATACTGACAC
131 AGCAGGAATCAGTAACTGAAATACATACAACATTAATTCACTAATACTGACAC
*
36754720 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTCAAGCAAATATAAAAACTTTATCTAT
1 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
*
36754785 ATCAATACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGG
66 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGG
36754850 AGCAGGAATCAGTAACTGAAATACATACAACATTAATTCACTAATACTGACAC
131 AGCAGGAATCAGTAACTGAAATACATACAACATTAATTCACTAATACTGACAC
*
36754903 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATGAAAACTTTATCTAT
1 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
36754968 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGG
66 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGG
* * *
36755033 AGCAGGAAGCAGTAACTGAAACATATACAACATTAATTCACTAATA-TAGACAC
131 AGCAGGAATCAGTAACTGAAATACATACAACATTAATTCACTAATACT-GACAC
36755086 ATG
1 ATG
36755089 GAACTATATC
Statistics
Matches: 360, Mismatches: 8, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
182 1 0.00
183 359 1.00
ACGTcount: A:0.42, C:0.15, G:0.15, T:0.28
Consensus pattern (183 bp):
ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGG
AGCAGGAATCAGTAACTGAAATACATACAACATTAATTCACTAATACTGACAC
Found at i:36760022 original size:76 final size:76
Alignment explanation
Indices: 36759916--36760125 Score: 191
Period size: 77 Copynumber: 2.7 Consensus size: 76
36759906 GCTCCTCGTT
* * *
36759916 CAAATGCCTTCGGGA-CATAG-CCGGTTTTAGTAACTCAC-CAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTC-GGATCTTAGCCCGG-ATTAGTAACTCACACAAAGCCTTCGGG-CTTAACCCGG
36759978 -ATT-TAATGACTCGCA
63 AATTGT-AT-A-TCGCA
* * *
36759993 CGAATGCCTTGCGGA-CTTA-CCCGGATTAGTATCTCGCACAAAGCCTTCGGGCTTAACCCGGAA
1 CAAATGCCTT-CGGATCTTAGCCCGGATTAGTAACTCACACAAAGCCTTCGGGCTTAACCCGGAA
36760056 TTGTATATCGCA
65 TTGTATATCGCA
* * * * *
36760068 CAAATGCCTTCGGATCTTAGTCCGGATTTATTCACTTAGCACAAAGCCTTCGGACTTA
1 CAAATGCCTTCGGATCTTAGCCCGGA-TTAGTAACTCA-CACAAAGCCTTCGGGCTTA
36760126 GCCGGACAGC
Statistics
Matches: 110, Mismatches: 14, Indels: 17
0.78 0.10 0.12
Matches are distributed among these distances:
74 4 0.04
75 18 0.16
76 26 0.24
77 42 0.38
78 20 0.18
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.27
Consensus pattern (76 bp):
CAAATGCCTTCGGATCTTAGCCCGGATTAGTAACTCACACAAAGCCTTCGGGCTTAACCCGGAAT
TGTATATCGCA
Found at i:36760052 original size:37 final size:37
Alignment explanation
Indices: 36759958--36760080 Score: 126
Period size: 37 Copynumber: 3.2 Consensus size: 37
36759948 ACTCACCAAT
* *
36759958 GCCTTCGGGACTTAACCCGGATTTAATGA-CTCGCACGAAT
1 GCCTTCGGG-CTTAACCCGGA-TTAGT-ATCTCGCAC-AAA
*
36759998 GCCTTGCGGACTT-ACCCGGATTAGTATCTCGCACAAA
1 GCCTT-CGGGCTTAACCCGGATTAGTATCTCGCACAAA
*
36760035 GCCTTCGGGCTTAACCCGGAATT-GTATATCGCACAAA
1 GCCTTCGGGCTTAACCCGG-ATTAGTATCTCGCACAAA
36760072 TGCCTTCGG
1 -GCCTTCGG
36760081 ATCTTAGTCC
Statistics
Matches: 73, Mismatches: 5, Indels: 12
0.81 0.06 0.13
Matches are distributed among these distances:
36 6 0.08
37 27 0.37
38 22 0.30
39 7 0.10
40 8 0.11
41 3 0.04
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (37 bp):
GCCTTCGGGCTTAACCCGGATTAGTATCTCGCACAAA
Found at i:36760818 original size:41 final size:39
Alignment explanation
Indices: 36760733--36760875 Score: 128
Period size: 41 Copynumber: 3.5 Consensus size: 39
36760723 TTGAATGCTG
* *
36760733 TCCGGGCTAAGTCCGAAGGCTTTTGTGCTAAGTGA-ATAAA
1 TCCGGGCTAAGTCCGAAGGCTTTTGTGCTAA-TTACA-AAT
*
36760773 TCCGGACTAAGATCCGAAGGCATTTTGTGCTAATTACAAAT
1 TCCGGGCTAAG-TCCGAAGGC-TTTTGTGCTAATTACAAAT
* * * *
36760814 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGA-TACTAAAT
1 TCCGGGCTAAG-TCCGAAGGCTTTTGTGCTA-ATTAC-AAAT
*
36760855 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGCTAAGT-CCGAAGGC
36760876 ATTCGTGCGA
Statistics
Matches: 87, Mismatches: 10, Indels: 11
0.81 0.09 0.10
Matches are distributed among these distances:
40 21 0.24
41 54 0.62
42 12 0.14
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCTTTTGTGCTAATTACAAAT
Found at i:36760910 original size:40 final size:41
Alignment explanation
Indices: 36760810--36760917 Score: 157
Period size: 41 Copynumber: 2.7 Consensus size: 41
36760800 TGCTAATTAC
* * *
36760810 AAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACT
1 AAATTCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGATACT
*
36760851 AAATTCCGGGTTAAGTCCCGAAGGCATTCGTGCGAG-TCATT
1 AAATTCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGAT-ACT
36760892 AAA-TCCGGGTTAAGTCCCGAAGGCAT
1 AAATTCCGGGTTAAGTCCCGAAGGCAT
36760918 GTTTGTGAGT
Statistics
Matches: 62, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
40 24 0.39
41 38 0.61
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (41 bp):
AAATTCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGATACT
Found at i:36775629 original size:41 final size:41
Alignment explanation
Indices: 36775552--36775838 Score: 200
Period size: 42 Copynumber: 7.0 Consensus size: 41
36775542 GCCGTAAACA
* * *
36775552 AGAGCAATAGCGGCGCTTTTGGTAA-AATGCCACTAAAAAAT
1 AGAGCATTAGCGGCGC-TTTGGTAAGAACGCCGCTAAAAAAT
*
36775593 AGAGCA-TAGCGGCGCTTTGGTAAAGAACACCGCT-AAAAAT
1 AGAGCATTAGCGGCGCTTTGGT-AAGAACGCCGCTAAAAAAT
* * *
36775633 AGAGCATTAGCGGCGGCTTTTGTAACAACGCCGCTAAAAATT
1 AGAGCATTAGCGGC-GCTTTGGTAAGAACGCCGCTAAAAAAT
* * * * * *
36775675 AAAGCCAAATAGCGGCGTTTTGG-GATAACACCGCTAAAAAAT
1 AGAG-C-ATTAGCGGCGCTTTGGTAAGAACGCCGCTAAAAAAT
* *
36775717 TGCAGGCATTAGCGGCGCTTTTGGTTAAG--CGCCACTAAAAAAT
1 AG-A-GCATTAGCGGCGC-TTTGG-TAAGAACGCCGCTAAAAAAT
* * * *
36775760 CGAGCATTAGGGGCGTTTTGGT-A-AACGTTCGCT-AAAAAT
1 AGAGCATTAGCGGCGCTTTGGTAAGAACG-CCGCTAAAAAAT
*
36775799 AAGAGCAATTTAGCGG-TCTTTGGTAA-AACGCCGCTAAAAA
1 -AGAGC-A-TTAGCGGCGCTTTGGTAAGAACGCCGCTAAAAA
36775839 GTTTATGGTT
Statistics
Matches: 193, Mismatches: 33, Indels: 39
0.73 0.12 0.15
Matches are distributed among these distances:
38 1 0.01
39 15 0.08
40 35 0.18
41 51 0.26
42 55 0.28
43 26 0.13
44 9 0.05
45 1 0.01
ACGTcount: A:0.34, C:0.19, G:0.24, T:0.23
Consensus pattern (41 bp):
AGAGCATTAGCGGCGCTTTGGTAAGAACGCCGCTAAAAAAT
Found at i:36775730 original size:42 final size:41
Alignment explanation
Indices: 36775684--36775780 Score: 108
Period size: 43 Copynumber: 2.3 Consensus size: 41
36775674 TAAAGCCAAA
* *
36775684 TAGCGGCGTTTTGGGATAA-CACCGCTAAAAAATTGCAGGCAT
1 TAGCGGCGTTTTGGGATAAGCACCACTAAAAAATCG-A-GCAT
* *
36775726 TAGCGGCGCTTTT-GGTTAAGCGCCACTAAAAAATCGAGCAT
1 TAGCGGCG-TTTTGGGATAAGCACCACTAAAAAATCGAGCAT
*
36775767 TAGGGGCGTTTTGG
1 TAGCGGCGTTTTGG
36775781 TAAACGTTCG
Statistics
Matches: 47, Mismatches: 5, Indels: 7
0.80 0.08 0.12
Matches are distributed among these distances:
40 4 0.09
41 12 0.26
42 14 0.30
43 17 0.36
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.26
Consensus pattern (41 bp):
TAGCGGCGTTTTGGGATAAGCACCACTAAAAAATCGAGCAT
Found at i:36775755 original size:85 final size:80
Alignment explanation
Indices: 36775552--36775838 Score: 226
Period size: 81 Copynumber: 3.5 Consensus size: 80
36775542 GCCGTAAACA
* * *
36775552 AGAGCAATAGCGGCGCTTTTGGTAAAATGCCACTAAAAAATAGAGCATAGCGGCGCTTTGGTAAA
1 AGAGCATTAGCGGCGCTTTTGGTAAAACGCCACTAAAAAATAAAGCATAGCGGCGCTTTGG-AAA
36775617 GAACACCGCTAAAAAT
65 GAACACCGCTAAAAAT
* * *
36775633 AGAGCATTAGCGGCGGCTTTT-GTAACAACGCCGCTAAAAATTAAAGCCAAATAGCGGCGTTTTG
1 AGAGCATTAGCGGC-GCTTTTGGTAA-AACGCCACTAAAAAATAAAG-C--ATAGCGGCGCTTTG
* *
36775697 G-GATAACACCGCTAAAAAAT
61 GAAAGAACACCGCT-AAAAAT
* * * ** * *
36775717 TGCAGGCATTAGCGGCGCTTTTGGTTAAGCGCCACTAAAAAATCGAGCATTAGGGGCGTTTTGG-
1 AG-A-GCATTAGCGGCGCTTTTGGTAAAACGCCACTAAAAAATAAAGCA-TAGCGGCGCTTTGGA
* **
36775781 TA-AACGTTCGCTAAAAAT
63 AAGAAC-ACCGCTAAAAAT
* *
36775799 AAGAGCAATTTAGCGG-TC-TTTGGTAAAACGCCGCTAAAAA
1 -AGAGC-A-TTAGCGGCGCTTTTGGTAAAACGCCACTAAAAA
36775839 GTTTATGGTT
Statistics
Matches: 168, Mismatches: 24, Indels: 28
0.76 0.11 0.13
Matches are distributed among these distances:
81 38 0.23
82 35 0.21
83 37 0.22
84 8 0.05
85 36 0.21
86 14 0.08
ACGTcount: A:0.34, C:0.19, G:0.24, T:0.23
Consensus pattern (80 bp):
AGAGCATTAGCGGCGCTTTTGGTAAAACGCCACTAAAAAATAAAGCATAGCGGCGCTTTGGAAAG
AACACCGCTAAAAAT
Found at i:36775795 original size:40 final size:43
Alignment explanation
Indices: 36775559--36775797 Score: 130
Period size: 41 Copynumber: 5.7 Consensus size: 43
36775549 ACAAGAGCAA
* * * *
36775559 TAGCGGCGCTTTTGGTAAAATGCCACTAAAAAATAG-A-GCA-
1 TAGCGGCGCTTTTGGTTAAACGCCGCTAAAAAATCGCAGGCAT
* * *
36775599 TAGCGGCGC-TTTGGTAAAGAACACCGCT-AAAAATAG-A-GCAT
1 TAGCGGCGCTTTTGGT-TA-AACGCCGCTAAAAAATCGCAGGCAT
* *** * *
36775640 TAGCGGCGGCTTTT-GTAACAACGCCGCT-AAAAATTAAAGCCAAA
1 TAGCGGC-GCTTTTGGTTA-AACGCCGCTAAAAAATCGCAGGC-AT
* * *
36775684 TAGCGGCG-TTTTGG-GATAACACCGCTAAAAAATTGCAGGCAT
1 TAGCGGCGCTTTTGGTTA-AACGCCGCTAAAAAATCGCAGGCAT
* *
36775726 TAGCGGCGCTTTTGGTTAAGCGCCACTAAAAAATCG-A-GCAT
1 TAGCGGCGCTTTTGGTTAAACGCCGCTAAAAAATCGCAGGCAT
* *
36775767 TAGGGGCG-TTTTGG-TAAACGTTCGCTAAAAA
1 TAGCGGCGCTTTTGGTTAAACG-CCGCTAAAAA
36775798 TAAGAGCAAT
Statistics
Matches: 161, Mismatches: 25, Indels: 26
0.76 0.12 0.12
Matches are distributed among these distances:
39 11 0.07
40 37 0.23
41 40 0.25
42 28 0.17
43 36 0.22
44 9 0.06
ACGTcount: A:0.33, C:0.19, G:0.24, T:0.23
Consensus pattern (43 bp):
TAGCGGCGCTTTTGGTTAAACGCCGCTAAAAAATCGCAGGCAT
Found at i:36775956 original size:13 final size:13
Alignment explanation
Indices: 36775938--36775964 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
36775928 TATGGATTTA
36775938 AGGGTTAGGGGTT
1 AGGGTTAGGGGTT
36775951 AGGGTTAGGGGTT
1 AGGGTTAGGGGTT
36775964 A
1 A
36775965 TAGGGTTAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.19, C:0.00, G:0.52, T:0.30
Consensus pattern (13 bp):
AGGGTTAGGGGTT
Found at i:36776571 original size:24 final size:25
Alignment explanation
Indices: 36776543--36776590 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
36776533 AATTTCCCCG
*
36776543 ATTT-CCCCAACATCTTCTCCCCAT
1 ATTTCCCCCAACATCTTCCCCCCAT
*
36776567 ATTTCCCCCAACTTCTTCCCCCCA
1 ATTTCCCCCAACATCTTCCCCCCA
36776591 AAATTTTTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 4 0.19
25 17 0.81
ACGTcount: A:0.19, C:0.50, G:0.00, T:0.31
Consensus pattern (25 bp):
ATTTCCCCCAACATCTTCCCCCCAT
Found at i:36778351 original size:39 final size:39
Alignment explanation
Indices: 36778306--36778527 Score: 186
Period size: 39 Copynumber: 5.6 Consensus size: 39
36778296 GCTCCTCGTT
* * *
36778306 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGG-TTTAGTAACTCGCA
* *
36778346 C-AATGCCTTC-GGACTTAACCCGGATTTAATGACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-TTTAGTAACTCGCA
* * *
36778384 CGAATGCCTTCGGGACTTAACCCGGATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGTTTAGTAACTCGCA
* *
36778423 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATA-TCGCA
1 CAAATGCCTTCGGGACTTAACCCGG--TTTAGTA-ACTCGCA
** * * *
36778463 CAAATGCCTTC-GGATCTTAGTCCGGATTTATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGG-TTTAGTAAC-TCGCA
*
36778504 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAACCCGG
36778528 ACAGCATTCA
Statistics
Matches: 149, Mismatches: 23, Indels: 20
0.78 0.12 0.10
Matches are distributed among these distances:
38 23 0.15
39 57 0.38
40 56 0.38
41 13 0.09
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAACCCGGTTTAGTAACTCGCA
Found at i:36778488 original size:79 final size:77
Alignment explanation
Indices: 36778306--36778528 Score: 209
Period size: 79 Copynumber: 2.8 Consensus size: 77
36778296 GCTCCTCGTT
* * *
36778306 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGACTTAACCCGGAT
1 CAAATGCCTTCGGGACTTAGCCCGG-ATTAGTAACTCACACAAGGCCTTCGGACTTAACCCGGAT
36778371 TTAATGACTCGCA
65 TTAATGACTCGCA
* * * * *
36778384 CGAATGCCTTCGGGACTTAACCCGGATTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGATTAGTAACTCACAC-AAGGCCTTC-GGACTTAACCCGG-
*
36778449 ATTTGTAT-A-TCGCA
63 ATTT-AATGACTCGCA
* * * * * *
36778463 CAAATGCCTTC-GGATCTTAGTCCGGATTTATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-TTAGTAACTCA-CACAAGGCCTTC-GGACTTAACCCG
36778527 GA
62 GA
36778529 CAGCATTCAA
Statistics
Matches: 118, Mismatches: 20, Indels: 13
0.78 0.13 0.09
Matches are distributed among these distances:
77 12 0.10
78 33 0.28
79 37 0.31
80 31 0.26
81 5 0.04
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (77 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTAGTAACTCACACAAGGCCTTCGGACTTAACCCGGATT
TAATGACTCGCA
Found at i:36785866 original size:24 final size:25
Alignment explanation
Indices: 36785830--36785884 Score: 96
Period size: 24 Copynumber: 2.3 Consensus size: 25
36785820 ACGATACCGA
36785830 GAAGCT-CAGGATAGCTAATATCGG
1 GAAGCTCCAGGATAGCTAATATCGG
36785854 GAAGCTCCA-GATAGCTAATATCGG
1 GAAGCTCCAGGATAGCTAATATCGG
36785878 GAAGCTC
1 GAAGCTC
36785885 ATAAAGAGCC
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
24 28 0.93
25 2 0.07
ACGTcount: A:0.33, C:0.20, G:0.27, T:0.20
Consensus pattern (25 bp):
GAAGCTCCAGGATAGCTAATATCGG
Found at i:36789921 original size:28 final size:29
Alignment explanation
Indices: 36789878--36789941 Score: 73
Period size: 30 Copynumber: 2.2 Consensus size: 29
36789868 AAATAAGTCT
36789878 AAGAAAATAACAATAAA-A-AGAAAT-AAA
1 AAGAAAATAACAATAAACACA-AAATAAAA
36789905 AAGAAACATAAGC-ATAAACACAAAATAAAA
1 AAGAAA-ATAA-CAATAAACACAAAATAAAA
36789935 AAGAAAA
1 AAGAAAA
36789942 CTAAAAAGAC
Statistics
Matches: 32, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
27 6 0.19
28 9 0.28
29 7 0.22
30 10 0.31
ACGTcount: A:0.75, C:0.08, G:0.08, T:0.09
Consensus pattern (29 bp):
AAGAAAATAACAATAAACACAAAATAAAA
Found at i:36803918 original size:94 final size:95
Alignment explanation
Indices: 36803672--36804032 Score: 318
Period size: 94 Copynumber: 3.9 Consensus size: 95
36803662 TGGGAAATAT
36803672 TACCGATGCCATGTCCCAGACATGGTCTTACACTGGCT-CTCATATACGCT-T-GCTGATGCATG
1 TACCGATGCCATGTCCCAGACATGGTCTTACACTGGCTACTCAT-T--G-TATGGCTGATGCATG
* * *
36803734 TCCTAGACATGTCTTACACCAGCA--CAACTCT-
62 TCCCAGACATGTCTTACACTAGCACTCATCTCTG
* * * * * *
36803765 TAGCTGAT-ACGTGTCCCAGACA-CGTCTTACACTGGCTATCTCTATCG-A-GGCCGATGCATGT
1 TA-CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTA-CTC-ATTGTATGGCTGATGCATGT
36803826 CCCATG-CATGTCTTACACTAGCACTCATCTCTG
63 CCCA-GACATGTCTTACACTAGCACTCATCTCTG
* *
36803859 TACCGATGCCATGTCCCAGACATGGTCTTACACTGGCTAC-CATTGTATGGTTGATGCATGTCCG
1 TACCGATGCCATGTCCCAGACATGGTCTTACACTGGCTACTCATTGTATGGCTGATGCATGTCCC
* * *
36803923 AGACATGTCTTACACTAGCCCTCGTCT-GG
66 AGACATGTCTTACACTAGCACTCATCTCTG
* * * ** * * * *
36803952 ATGCCGATGTCATGTCCCATACATGGTCTTACACTGGCT-CTCATAATGTCGCCGAAGCATGTCC
1 -TACCGATGCCATGTCCCAGACATGGTCTTACACTGGCTACTCATTGTATGGCTGATGCATGTCC
* *
36804016 TAGACATATCTTACACT
65 CAGACATGTCTTACACT
36804033 GGCGCATAAA
Statistics
Matches: 219, Mismatches: 32, Indels: 33
0.77 0.11 0.12
Matches are distributed among these distances:
91 30 0.14
92 19 0.09
93 29 0.13
94 124 0.57
95 17 0.08
ACGTcount: A:0.22, C:0.30, G:0.19, T:0.29
Consensus pattern (95 bp):
TACCGATGCCATGTCCCAGACATGGTCTTACACTGGCTACTCATTGTATGGCTGATGCATGTCCC
AGACATGTCTTACACTAGCACTCATCTCTG
Found at i:36803919 original size:47 final size:48
Alignment explanation
Indices: 36803776--36803991 Score: 141
Period size: 47 Copynumber: 4.6 Consensus size: 48
36803766 AGCTGATACG
* * * *
36803776 TGTCCCAGACA-CGTCTTACACTGGCTATCTC-TATCGAGGCCGATG-CA
1 TGTCCCAGACATGGTCTTACACTGGCT-CCTCGTATGGA-TCCGATGCCA
* * * *
36803823 TGTCCCATG-CAT-GTCTTACACTAGCACTCATC-TCTGTA-CCGATGCCA
1 TGTCCCA-GACATGGTCTTACACT-G-GCTCCTCGTATGGATCCGATGCCA
* *
36803870 TGTCCCAGACATGGTCTTACACTGGCTACCATTGTATGG-T-TGATG-CA
1 TGTCCCAGACATGGTCTTACACTGGCT-CC-TCGTATGGATCCGATGCCA
* * * *
36803917 TGTCCGAGACAT-GTCTTACACTAGC-CCTCGTCTGGATGCCGATGTCA
1 TGTCCCAGACATGGTCTTACACTGGCTCCTCGTATGGAT-CCGATGCCA
*
36803964 TGTCCCATACATGGTCTTACACTGGCTC
1 TGTCCCAGACATGGTCTTACACTGGCTC
36803992 TCATAATGTC
Statistics
Matches: 132, Mismatches: 20, Indels: 32
0.72 0.11 0.17
Matches are distributed among these distances:
43 6 0.05
44 3 0.02
46 25 0.19
47 58 0.44
48 34 0.26
49 6 0.05
ACGTcount: A:0.20, C:0.30, G:0.20, T:0.29
Consensus pattern (48 bp):
TGTCCCAGACATGGTCTTACACTGGCTCCTCGTATGGATCCGATGCCA
Found at i:36804415 original size:30 final size:30
Alignment explanation
Indices: 36804374--36804431 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
36804364 AAATTTACAT
* *
36804374 CTTTGGTAAAATGACCATTTTGCCCCTAAA
1 CTTTGGCAAAATGACCATTTTACCCCTAAA
36804404 CTTTGGCAAAATGACCATTTTACCCCTA
1 CTTTGGCAAAATGACCATTTTACCCCTA
36804432 TGCCCGAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.29, C:0.26, G:0.12, T:0.33
Consensus pattern (30 bp):
CTTTGGCAAAATGACCATTTTACCCCTAAA
Found at i:36808766 original size:12 final size:13
Alignment explanation
Indices: 36808744--36808772 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
36808734 GTATGAGCAC
36808744 TATAGTTTTATGA
1 TATAGTTTTATGA
36808757 TATA-TTTTATGA
1 TATAGTTTTATGA
36808769 TATA
1 TATA
36808773 AATTAACTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.55
Consensus pattern (13 bp):
TATAGTTTTATGA
Found at i:36809832 original size:19 final size:19
Alignment explanation
Indices: 36809810--36809849 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
36809800 AATAGTCATA
36809810 CAGAAATAGAATACGGAAT
1 CAGAAATAGAATACGGAAT
*
36809829 CAGAAATAGAATATGGAAT
1 CAGAAATAGAATACGGAAT
36809848 CA
1 CA
36809850 ATTATAACGA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.53, C:0.10, G:0.20, T:0.17
Consensus pattern (19 bp):
CAGAAATAGAATACGGAAT
Found at i:36817555 original size:20 final size:19
Alignment explanation
Indices: 36817525--36817586 Score: 76
Period size: 19 Copynumber: 3.4 Consensus size: 19
36817515 GAGTAAGAAC
36817525 AATTGAATCTAGGTCAATT
1 AATTGAATCTAGGTCAATT
* *
36817544 AATTGAAATCTAAG--AA-C
1 AATTG-AATCTAGGTCAATT
36817561 AATTGAATCTAGGTCAATT
1 AATTGAATCTAGGTCAATT
36817580 AATTGAA
1 AATTGAA
36817587 ATCTCTTTCT
Statistics
Matches: 35, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
16 7 0.20
17 5 0.14
18 4 0.11
19 12 0.34
20 7 0.20
ACGTcount: A:0.44, C:0.10, G:0.15, T:0.32
Consensus pattern (19 bp):
AATTGAATCTAGGTCAATT
Found at i:36817565 original size:36 final size:36
Alignment explanation
Indices: 36817518--36817590 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
36817508 CTTTCGAGAG
36817518 TAAGAACAATTGAATCTAGGTCAATTAATTGAAATC
1 TAAGAACAATTGAATCTAGGTCAATTAATTGAAATC
36817554 TAAGAACAATTGAATCTAGGTCAATTAATTGAAATC
1 TAAGAACAATTGAATCTAGGTCAATTAATTGAAATC
36817590 T
1 T
36817591 CTTTCTAATT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.44, C:0.11, G:0.14, T:0.32
Consensus pattern (36 bp):
TAAGAACAATTGAATCTAGGTCAATTAATTGAAATC
Found at i:36831926 original size:64 final size:64
Alignment explanation
Indices: 36831845--36832028 Score: 178
Period size: 67 Copynumber: 2.8 Consensus size: 64
36831835 AGACATTATG
* *
36831845 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACAG-GATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTA-AGAGATAA
* * * * * * *
36831909 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACCCCATGTAGACAAGAGAGCTATGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTAAGAGAT
36831974 AA
63 AA
* * *
36831976 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
36832029 CAAACTATAT
Statistics
Matches: 96, Mismatches: 18, Indels: 13
0.76 0.14 0.10
Matches are distributed among these distances:
62 1 0.01
63 18 0.19
64 25 0.26
66 22 0.23
67 30 0.31
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.24
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTAAGAGATAA
Found at i:36836001 original size:42 final size:42
Alignment explanation
Indices: 36835942--36836071 Score: 161
Period size: 42 Copynumber: 3.1 Consensus size: 42
36835932 TGGGGTTAGT
36835942 TGAGATTACGTGTAAGACCATATCTGGGATATGGCATTGATA
1 TGAGATTACGTGTAAGACCATATCTGGGATATGGCATTGATA
** * * * *
36835984 TGAGATTTTGTGTAAGACCATAGCTAGGCTATTGGCATCGATA
1 TGAGATTACGTGTAAGACCATATCTGGGATA-TGGCATTGATA
** * *
36836027 TGAGATCCCATGTAAGACCATATCTGGGATATGGCATTGGTA
1 TGAGATTACGTGTAAGACCATATCTGGGATATGGCATTGATA
36836069 TGA
1 TGA
36836072 TACTATGTGT
Statistics
Matches: 72, Mismatches: 15, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
42 38 0.53
43 34 0.47
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (42 bp):
TGAGATTACGTGTAAGACCATATCTGGGATATGGCATTGATA
Found at i:36836032 original size:43 final size:42
Alignment explanation
Indices: 36835942--36836063 Score: 136
Period size: 43 Copynumber: 2.9 Consensus size: 42
36835932 TGGGGTTAGT
* * *
36835942 TGAGATTACGTGTAAGACCATATCTGGGATATGGCATTGATA
1 TGAGATTACGTGTAAGACCATAGCTAGGATATGGCATCGATA
** *
36835984 TGAGATTTTGTGTAAGACCATAGCTAGGCTATTGGCATCGATA
1 TGAGATTACGTGTAAGACCATAGCTAGGATA-TGGCATCGATA
** * * *
36836027 TGAGATCCCATGTAAGACCATATCTGGGATATGGCAT
1 TGAGATTACGTGTAAGACCATAGCTAGGATATGGCAT
36836064 TGGTATGATA
Statistics
Matches: 66, Mismatches: 13, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
42 32 0.48
43 34 0.52
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (42 bp):
TGAGATTACGTGTAAGACCATAGCTAGGATATGGCATCGATA
Found at i:36836174 original size:20 final size:20
Alignment explanation
Indices: 36836146--36836192 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
36836136 CGGAAAATTT
36836146 TAAGTTGTGAAAGATTATGG
1 TAAGTTGTGAAAGATTATGG
*
36836166 TATGTTGTGAAAGATTATGG
1 TAAGTTGTGAAAGATTATGG
36836186 TAAGTTG
1 TAAGTTG
36836193 CAAGTTTGGT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.32, C:0.00, G:0.30, T:0.38
Consensus pattern (20 bp):
TAAGTTGTGAAAGATTATGG
Found at i:36838589 original size:46 final size:45
Alignment explanation
Indices: 36838539--36838712 Score: 201
Period size: 46 Copynumber: 3.8 Consensus size: 45
36838529 TGGTTGAGCA
36838539 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
36838585 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GGAATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GA-T-GCGAAG
*
36838630 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *
36838676 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
36838713 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 32 0.30
46 68 0.63
47 3 0.03
48 1 0.01
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:36838691 original size:91 final size:91
Alignment explanation
Indices: 36838536--36838705 Score: 304
Period size: 91 Copynumber: 1.9 Consensus size: 91
36838526 GGATGGTTGA
* *
36838536 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
36838601 TGAGTCCGAGTTCGGAATGTAACTAG
66 TGAGTCCGAGTTCGGAATGTAACTAG
* *
36838627 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
36838692 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
36838706 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
91 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (91 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGGAATGTAACTAG
Done.