Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 113 of 362
Found at i:37130317 original size:79 final size:81
Alignment explanation
Indices: 37130208--37130390 Score: 241
Period size: 79 Copynumber: 2.3 Consensus size: 81
37130198 TACTCGTTCA
* *
37130208 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
37130271 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
**
37130288 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
*
37130351 TATAGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
37130367 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
37130391 CATCATTCGA
Statistics
Matches: 91, Mismatches: 8, Indels: 8
0.85 0.07 0.07
Matches are distributed among these distances:
78 3 0.03
79 60 0.66
80 28 0.31
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:37130390 original size:40 final size:40
Alignment explanation
Indices: 37130187--37130390 Score: 247
Period size: 40 Copynumber: 5.1 Consensus size: 40
37130177 CGGAATTTAA
** *
37130187 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
37130227 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
37130267 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
37130306 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* *
37130346 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
37130386 CCGGA
1 CCGGA
37130391 CATCATTCGA
Statistics
Matches: 142, Mismatches: 15, Indels: 14
0.83 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 95 0.67
41 12 0.08
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:37132221 original size:9 final size:10
Alignment explanation
Indices: 37132209--37132277 Score: 53
Period size: 9 Copynumber: 7.5 Consensus size: 10
37132199 AGCGATCAAA
37132209 AATAAATAA-
1 AATAAATAAT
37132218 AATAAATAA-
1 AATAAATAAT
* *
37132227 ACT-AA-AAG
1 AATAAATAAT
*
37132235 AATAAATAGAG
1 AATAAATA-AT
37132246 AAT-AATAAT
1 AATAAATAAT
37132255 AAT-AATAAT
1 AATAAATAAT
37132264 AAT-AATAAT
1 AATAAATAAT
37132273 AATAA
1 AATAA
37132278 TGGAATAAGG
Statistics
Matches: 52, Mismatches: 3, Indels: 9
0.81 0.05 0.14
Matches are distributed among these distances:
7 2 0.04
8 4 0.08
9 35 0.67
10 6 0.12
11 5 0.10
ACGTcount: A:0.70, C:0.01, G:0.04, T:0.25
Consensus pattern (10 bp):
AATAAATAAT
Found at i:37132254 original size:3 final size:3
Alignment explanation
Indices: 37132246--37132278 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
37132236 ATAAATAGAG
37132246 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
37132279 GGAATAAGGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:37134049 original size:43 final size:43
Alignment explanation
Indices: 37134001--37134368 Score: 592
Period size: 43 Copynumber: 8.6 Consensus size: 43
37133991 GGCATTACGT
** * *
37134001 CTGCTAGGCACGAAGGCCTAAATACACATCACCAGCACAAAGC
1 CTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGC
* * *
37134044 CTGCTACGCACGAAGGCCCGAATACACATCACCTGAACGAAGC
1 CTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGC
* * *
37134087 CTGCTAGGCACGAAGGCCCGAATATACATCATCGGAACGAAGC
1 CTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGC
* *
37134130 CTGTTAGGCACGAAGGCCCGAATATACATCACCGGCACGAAGC
1 CTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGC
*
37134173 CTGCTAGGCACGAAGGCCCGAATACATATCACCGGCACGAAGC
1 CTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGC
*
37134216 CTGCTAGGCCCGAAGGCCCGAATACACATCACCGGCACGAAGC
1 CTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGC
*
37134259 CTGCTAGGCACGAAGGTCCGAATACACATCACCGGCACGAAGC
1 CTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGC
*
37134302 CTGCTAGGCACGAAGGCCCGAATACACATCACTGGCACGAAGC
1 CTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGC
37134345 CTGCTAGGCACGAAGGCCCGAATA
1 CTGCTAGGCACGAAGGCCCGAATA
37134369 TAATACTAGC
Statistics
Matches: 303, Mismatches: 22, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 303 1.00
ACGTcount: A:0.31, C:0.32, G:0.24, T:0.12
Consensus pattern (43 bp):
CTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGC
Found at i:37134445 original size:38 final size:38
Alignment explanation
Indices: 37134361--37134484 Score: 106
Period size: 38 Copynumber: 3.2 Consensus size: 38
37134351 GGCACGAAGG
* * * *
37134361 CCCGAATATAATACTAGCACT-AGGCCTGCAGGATTTAT
1 CCCGGATATAATACTAGCA-TGAAGCCTGCGGGATTTAA
* * *
37134399 TCCTGATATAATACTAGCATGAAGCCTACGGGATTTAA
1 CCCGGATATAATACTAGCATGAAGCCTGCGGGATTTAA
** * * *
37134437 CCCGGATATTTTACCAGCACGAAGCCTGCGGGTCTTTAA
1 CCCGGATATAATACTAGCATGAAGCCTGCGGG-ATTTAA
37134476 GCCCGGATA
1 -CCCGGATA
37134485 CACATCAAAT
Statistics
Matches: 68, Mismatches: 15, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
37 1 0.01
38 54 0.79
39 5 0.07
40 8 0.12
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.26
Consensus pattern (38 bp):
CCCGGATATAATACTAGCATGAAGCCTGCGGGATTTAA
Found at i:37141692 original size:46 final size:44
Alignment explanation
Indices: 37141542--37141748 Score: 198
Period size: 46 Copynumber: 4.5 Consensus size: 44
37141532 CATGAGATTT
* *
37141542 TAAGACATGTCTGGGACATGCATCGGCCACATTATGATAGCCAGTG
1 TAAGACATGTCTGGGACATGCATC-GCCACA-GATGAGAGCCAGTG
* * * * * *
37141588 TAAGACCATGTATGGGACATGGCATCGGCATTGAGACGAGGGCTAGTG
1 TAAGA-CATGTCTGGGACAT-GCATCGCCA--CAGATGAGAGCCAGTG
*
37141636 TAAGACATGTCTGGGACATGGATCAGCCACAGTATGAGAGCCAGTG
1 TAAGACATGTCTGGGACATGCATC-GCCACAG-ATGAGAGCCAGTG
* **
37141682 TAAGACATGTCTGGGACATGCATCGACCTAGAGATGTTAGCCAGTG
1 TAAGACATGTCTGGGACATGCATCG-CC-ACAGATGAGAGCCAGTG
* *
37141728 TCAGACATGTCTAGGACATGC
1 TAAGACATGTCTGGGACATGC
37141749 GTCGGCTACG
Statistics
Matches: 132, Mismatches: 21, Indels: 16
0.78 0.12 0.09
Matches are distributed among these distances:
45 3 0.02
46 74 0.56
47 35 0.27
48 19 0.14
49 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.22
Consensus pattern (44 bp):
TAAGACATGTCTGGGACATGCATCGCCACAGATGAGAGCCAGTG
Found at i:37142550 original size:31 final size:31
Alignment explanation
Indices: 37142503--37142586 Score: 134
Period size: 31 Copynumber: 2.7 Consensus size: 31
37142493 TTAGTCTTGA
*
37142503 CATAT-ACTGAGTCGAAGCCTTTCCATAAAT
1 CATATCACTGGGTCGAAGCCTTTCCATAAAT
*
37142533 CATATCACTGGGTCGAAGCCTTTTCATAAAT
1 CATATCACTGGGTCGAAGCCTTTCCATAAAT
*
37142564 CATATCACTGGGCCGAAGCCTTT
1 CATATCACTGGGTCGAAGCCTTT
37142587 ACTGTAACCA
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
30 5 0.10
31 45 0.90
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.30
Consensus pattern (31 bp):
CATATCACTGGGTCGAAGCCTTTCCATAAAT
Found at i:37142835 original size:25 final size:25
Alignment explanation
Indices: 37142807--37142876 Score: 106
Period size: 25 Copynumber: 2.8 Consensus size: 25
37142797 CTCTTTTAAT
37142807 AACTGGGGCAAAGCCC-TTTCTGATA
1 AACTGGGGCAAAGCCCTTTTC-GATA
*
37142832 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
37142857 AACTGGGGCAGAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
37142877 AGCACTTCCT
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
25 38 0.90
26 4 0.10
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.24
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:37146020 original size:30 final size:31
Alignment explanation
Indices: 37145986--37146043 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 31
37145976 TATATTATAA
37145986 TAATAGTTATACATGTAT-TAA-TATTTTCAG
1 TAATAGTTATACAT-TATATAATTATTTTCAG
*
37146016 TAATAGTTATATATTATATAATTATTTT
1 TAATAGTTATACATTATATAATTATTTT
37146044 ATGTATTAGT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
29 3 0.12
30 16 0.64
31 6 0.24
ACGTcount: A:0.38, C:0.03, G:0.07, T:0.52
Consensus pattern (31 bp):
TAATAGTTATACATTATATAATTATTTTCAG
Found at i:37148316 original size:42 final size:42
Alignment explanation
Indices: 37148215--37148352 Score: 165
Period size: 43 Copynumber: 3.2 Consensus size: 42
37148205 ATGCGTTTTT
* *
37148215 GTGTAAGACCATGTCTGGGATATTGGCATCG-ACTTATGATTTAC
1 GTGTAAGACCCTGTCTGGGACATTGGCATCGTA-TT-TGATTT-C
37148259 GT-TAAGACCAC-GTCTGGGACATTGGCATCGTATTTGATTTC
1 GTGTAAGACC-CTGTCTGGGACATTGGCATCGTATTTGATTTC
* *
37148300 GTGTAAGACCCTGTCTGGGACAGTGGCATCGATATTTGATTAC
1 GTGTAAGACCCTGTCTGGGACATTGGCATCG-TATTTGATTTC
*
37148343 ATGTAAGACC
1 GTGTAAGACC
37148353 ACATATGAGA
Statistics
Matches: 84, Mismatches: 5, Indels: 11
0.84 0.05 0.11
Matches are distributed among these distances:
41 4 0.05
42 31 0.37
43 46 0.55
44 3 0.04
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (42 bp):
GTGTAAGACCCTGTCTGGGACATTGGCATCGTATTTGATTTC
Found at i:37148369 original size:85 final size:85
Alignment explanation
Indices: 37148215--37148376 Score: 193
Period size: 85 Copynumber: 1.9 Consensus size: 85
37148205 ATGCGTTTTT
* * * * * *
37148215 GTGTAAGACCATGTCTGGGATATTGGCATCGACTTATGATTTACGTTAAGACCACGTCTGGGACA
1 GTGTAAGACCATGTCTGGGACAGTGGCATCGACTTATGATTTACATTAAGACCACATATGAGACA
37148280 TTGGCATCGTATTTGATTTC
66 TTGGCATCGTATTTGATTTC
* *
37148300 GTGTAAGACCCTGTCTGGGACAGTGGCATCGA-TATTTGA-TTACATGTAAGACCACATATGAGA
1 GTGTAAGACCATGTCTGGGACAGTGGCATCGACT-TATGATTTACAT-TAAGACCACATATGAGA
** *
37148363 TGTTGGCATTGTAT
64 CATTGGCATCGTAT
37148377 GAGCTTTCTG
Statistics
Matches: 64, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
84 6 0.09
85 58 0.91
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (85 bp):
GTGTAAGACCATGTCTGGGACAGTGGCATCGACTTATGATTTACATTAAGACCACATATGAGACA
TTGGCATCGTATTTGATTTC
Found at i:37148465 original size:19 final size:19
Alignment explanation
Indices: 37148443--37148482 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
37148433 CGAGAAATGA
37148443 ATGATTATATGAGATATGT
1 ATGATTATATGAGATATGT
*
37148462 ATGATTATATGGGATATGT
1 ATGATTATATGAGATATGT
37148481 AT
1 AT
37148483 CCGATTCAGG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.35, C:0.00, G:0.23, T:0.42
Consensus pattern (19 bp):
ATGATTATATGAGATATGT
Found at i:37149477 original size:54 final size:52
Alignment explanation
Indices: 37149400--37149543 Score: 132
Period size: 51 Copynumber: 2.7 Consensus size: 52
37149390 ACACGGTCGT
* * *
37149400 ACACATAGGCGTGTG-CTATGCCGTGTGACCAAGTCAGTTTTGACCACGGGCGAG
1 ACACATGGGCGTGGGACTA-GCCGTGTGACCAAGTCAG-TTTGA-CACAGGCGAG
* * * * *
37149454 ACACATGGGCGTGCGGTC-AGCCGTGTGACCACGTTAG-TTGAGACAGGCTAG
1 ACACATGGGCGTG-GGACTAGCCGTGTGACCAAGTCAGTTTGACACAGGCGAG
* *
37149505 ACACATGGGCGTGTGACTGGCCGTGTGACCCAAGTCAGT
1 ACACATGGGCGTGGGACTAGCCGTGTGA-CCAAGTCAGT
37149544 AGCCTCCCTA
Statistics
Matches: 73, Mismatches: 12, Indels: 11
0.76 0.12 0.11
Matches are distributed among these distances:
50 2 0.03
51 29 0.40
52 11 0.15
54 28 0.38
55 2 0.03
56 1 0.01
ACGTcount: A:0.22, C:0.24, G:0.33, T:0.21
Consensus pattern (52 bp):
ACACATGGGCGTGGGACTAGCCGTGTGACCAAGTCAGTTTGACACAGGCGAG
Found at i:37156096 original size:43 final size:43
Alignment explanation
Indices: 37155941--37156097 Score: 169
Period size: 43 Copynumber: 3.7 Consensus size: 43
37155931 TGTGTTTTCT
* * *
37155941 TGTAAGACCACGTCTAGGACGTTGGTATC-A-ACTTATGACTTATG
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATA-TT-TGA-TTACG
*
37155985 TGTAAGACCACGTCTGGGACGTTGGCATCG-TATTTGATTTCG
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTACG
* ** *
37156027 TGTAAGACC-CTGCCTGGGACAATGGCATCGATATTTGATTACA
1 TGTAAGACCAC-GTCTGGGACGTTGGCATCGATATTTGATTACG
*
37156070 AGTAAGACCACGTCTGGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACGTTGGCAT
37156098 TGTATGAGCT
Statistics
Matches: 95, Mismatches: 13, Indels: 11
0.80 0.11 0.09
Matches are distributed among these distances:
41 1 0.01
42 28 0.29
43 35 0.37
44 30 0.32
45 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.29
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTACG
Found at i:37157647 original size:43 final size:41
Alignment explanation
Indices: 37157525--37157703 Score: 254
Period size: 41 Copynumber: 4.3 Consensus size: 41
37157515 TATTCGGGCT
* * *
37157525 TTATTGCCTAGCAAGCTTTGTGCCGGTGTATTAAATCAAGC
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGC
37157566 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGC
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGC
* *
37157607 TTATTGCCTAGTAGGCTTTATATGCCGGTGTATTATATCAGGC
1 TTATTGCCTAGCAGGC-TT-TGTGCCGGTGTATTATATCAGGC
*
37157650 TTATTGCCTAGCAGGCTCTGTGCCGGTGTATTATA-CTAGGC
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATC-AGGC
37157691 TT-TATGCCTAGCA
1 TTAT-TGCCTAGCA
37157704 AATTTTATGT
Statistics
Matches: 126, Mismatches: 8, Indels: 8
0.89 0.06 0.06
Matches are distributed among these distances:
40 2 0.02
41 84 0.67
42 3 0.02
43 37 0.29
ACGTcount: A:0.20, C:0.20, G:0.24, T:0.36
Consensus pattern (41 bp):
TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGC
Found at i:37157652 original size:84 final size:84
Alignment explanation
Indices: 37157545--37157701 Score: 255
Period size: 84 Copynumber: 1.9 Consensus size: 84
37157535 GCAAGCTTTG
*
37157545 TGCCGGTGTATTAAATCAAGCTTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATA-TCAGGC-T
1 TGCCGGTGTATTAAATCAAGCTTATTGCCTAGCAGGCTCTGTGCCGGTGTATTATACT-AGGCTT
37157608 TATTGCCTAGTAGGCTTTATA
65 TA-TGCCTAGTAGGCTTTATA
* *
37157629 TGCCGGTGTATTATATCAGGCTTATTGCCTAGCAGGCTCTGTGCCGGTGTATTATACTAGGCTTT
1 TGCCGGTGTATTAAATCAAGCTTATTGCCTAGCAGGCTCTGTGCCGGTGTATTATACTAGGCTTT
37157694 ATGCCTAG
66 ATGCCTAG
37157702 CAAATTTTAT
Statistics
Matches: 68, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
84 64 0.94
85 4 0.06
ACGTcount: A:0.20, C:0.19, G:0.25, T:0.36
Consensus pattern (84 bp):
TGCCGGTGTATTAAATCAAGCTTATTGCCTAGCAGGCTCTGTGCCGGTGTATTATACTAGGCTTT
ATGCCTAGTAGGCTTTATA
Found at i:37157711 original size:84 final size:84
Alignment explanation
Indices: 37157525--37157711 Score: 247
Period size: 84 Copynumber: 2.2 Consensus size: 84
37157515 TATTCGGGCT
* * *
37157525 TTATTGCCTAGCAAGC-TT-TGTGCCGGTGTATTAAATCAAGCTTATTGCCTAGCAGGCTTTGTG
1 TTATTGCCTAGCAAACTTTATATGCCGGTGTATTAAATCAAGCTTATTGCCTAGCAGGCTCTGTG
37157588 CCGGTGTATTATATCAGGC
66 CCGGTGTATTATATCAGGC
* ** * *
37157607 TTATTGCCTAGTAGGCTTTATATGCCGGTGTATTATATCAGGCTTATTGCCTAGCAGGCTCTGTG
1 TTATTGCCTAGCAAACTTTATATGCCGGTGTATTAAATCAAGCTTATTGCCTAGCAGGCTCTGTG
37157672 CCGGTGTATTATA-CTAGGC
66 CCGGTGTATTATATC-AGGC
*
37157691 TT-TATGCCTAGCAAATTTTAT
1 TTAT-TGCCTAGCAAACTTTAT
37157712 GTGAACAACG
Statistics
Matches: 91, Mismatches: 10, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
82 14 0.15
83 4 0.04
84 73 0.80
ACGTcount: A:0.21, C:0.19, G:0.23, T:0.37
Consensus pattern (84 bp):
TTATTGCCTAGCAAACTTTATATGCCGGTGTATTAAATCAAGCTTATTGCCTAGCAGGCTCTGTG
CCGGTGTATTATATCAGGC
Found at i:37160892 original size:15 final size:15
Alignment explanation
Indices: 37160872--37160900 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
37160862 TGTATGAATT
37160872 TATATATATTATGGC
1 TATATATATTATGGC
37160887 TATATATATTATGG
1 TATATATATTATGG
37160901 TCGAATATGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.34, C:0.03, G:0.14, T:0.48
Consensus pattern (15 bp):
TATATATATTATGGC
Found at i:37165166 original size:27 final size:27
Alignment explanation
Indices: 37165136--37165225 Score: 112
Period size: 27 Copynumber: 3.4 Consensus size: 27
37165126 ATTAGCAAAG
*
37165136 TACCCTCGATTTATAAAATTACTATTT
1 TACCCTCGATTTATAAAATTACTGTTT
* *
37165163 TACCCTTGATTTATAGAATTACTGTTT
1 TACCCTCGATTTATAAAATTACTGTTT
* *
37165190 TACCATCGATTT-TCAAATTAC-GTTT
1 TACCCTCGATTTATAAAATTACTGTTT
*
37165215 TACCCTTGATT
1 TACCCTCGATT
37165226 GTGAAATTAC
Statistics
Matches: 54, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
25 13 0.24
26 7 0.13
27 34 0.63
ACGTcount: A:0.28, C:0.19, G:0.08, T:0.46
Consensus pattern (27 bp):
TACCCTCGATTTATAAAATTACTGTTT
Found at i:37165232 original size:25 final size:25
Alignment explanation
Indices: 37165151--37165237 Score: 86
Period size: 25 Copynumber: 3.4 Consensus size: 25
37165141 TCGATTTATA
* *
37165151 AAATTACTATTTTACCCTTGATTTAT
1 AAATTACTGTTTTACCCTTGATTT-C
* *
37165177 AGAATTACTGTTTTACCATCGATTTTC
1 A-AATTACTGTTTTACCCTTGA-TTTC
*
37165204 AAATTAC-GTTTTACCCTTGATTGTG
1 AAATTACTGTTTTACCCTTGATT-TC
37165229 AAATTACTG
1 AAATTACTG
37165238 AAATACCCCT
Statistics
Matches: 50, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
24 2 0.04
25 19 0.38
26 8 0.16
27 18 0.36
28 3 0.06
ACGTcount: A:0.29, C:0.16, G:0.10, T:0.45
Consensus pattern (25 bp):
AAATTACTGTTTTACCCTTGATTTC
Found at i:37165287 original size:27 final size:27
Alignment explanation
Indices: 37165257--37165355 Score: 128
Period size: 27 Copynumber: 3.7 Consensus size: 27
37165247 TATAGGGTAG
37165257 AATTACCAAAATACCCCTAGTTTGTGA
1 AATTACCAAAATACCCCTAGTTTGTGA
* *
37165284 AATTACCAAAATACCACTGGTTTGTGA
1 AATTACCAAAATACCCCTAGTTTGTGA
* * * *
37165311 AATTACCGAAATA-CCCTCAATTTATAA
1 AATTACCAAAATACCCCT-AGTTTGTGA
37165338 AATTACCAAAATACCCCT
1 AATTACCAAAATACCCCT
37165356 GATTTACATA
Statistics
Matches: 61, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
26 3 0.05
27 54 0.89
28 4 0.07
ACGTcount: A:0.40, C:0.23, G:0.08, T:0.28
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTGTGA
Found at i:37165360 original size:27 final size:27
Alignment explanation
Indices: 37165257--37165394 Score: 111
Period size: 27 Copynumber: 5.1 Consensus size: 27
37165247 TATAGGGTAG
* *
37165257 AATTACCAAAATACCCCT-AGTTTGTGA
1 AATTACCAAAATACCCCTGA-TTTATAA
* * * *
37165284 AATTACCAAAATACCACTGGTTTGTGA
1 AATTACCAAAATACCCCTGATTTATAA
* *
37165311 AATTACCGAAATA-CCCTCAATTTATAA
1 AATTACCAAAATACCCCT-GATTTATAA
* *
37165338 AATTACCAAAATACCCCTGATTTACAT
1 AATTACCAAAATACCCCTGATTTATAA
* *
37165365 AATTA-CAGAAATACCCTTGACTTTCTAA
1 AATTACCA-AAATACCCCTGA-TTTATAA
37165393 AA
1 AA
37165395 ATTATAGAAA
Statistics
Matches: 90, Mismatches: 16, Indels: 9
0.78 0.14 0.08
Matches are distributed among these distances:
26 5 0.06
27 75 0.83
28 10 0.11
ACGTcount: A:0.41, C:0.22, G:0.08, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCCTGATTTATAA
Found at i:37165369 original size:54 final size:55
Alignment explanation
Indices: 37165257--37165381 Score: 139
Period size: 54 Copynumber: 2.3 Consensus size: 55
37165247 TATAGGGTAG
* * * * * **
37165257 AATTACCAAAATACCC-CTAGTTTGTGAAATTACCAAAATACCACTGGTTTGTGA
1 AATTACCGAAATACCCTCTAATTTATAAAATTACCAAAATACCACTGATTTGACA
*
37165311 AATTACCGAAATACCCTC-AATTTATAAAATTACCAAAATACCCCTGATTT-ACA
1 AATTACCGAAATACCCTCTAATTTATAAAATTACCAAAATACCACTGATTTGACA
*
37165364 TAATTACAGAAATACCCT
1 -AATTACCGAAATACCCT
37165382 TGACTTTCTA
Statistics
Matches: 60, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
53 1 0.02
54 58 0.97
55 1 0.02
ACGTcount: A:0.41, C:0.22, G:0.08, T:0.29
Consensus pattern (55 bp):
AATTACCGAAATACCCTCTAATTTATAAAATTACCAAAATACCACTGATTTGACA
Found at i:37165443 original size:27 final size:27
Alignment explanation
Indices: 37165310--37165439 Score: 111
Period size: 27 Copynumber: 4.7 Consensus size: 27
37165300 CTGGTTTGTG
** *
37165310 AAATTACCGAAATACCCTCAATTTATA
1 AAATTACCGAAATACCCTTGATTTACA
* *
37165337 AAATTACCAAAATACCCCTGATTTACA
1 AAATTACCGAAATACCCTTGATTTACA
* *
37165364 TAATTACAGAAATACCCTTGACTTT-CTAA
1 AAATTACCGAAATACCCTTGA-TTTAC--A
** *
37165393 AAATTATAGAAATACCATT-AGTTTACA
1 AAATTACCGAAATACCCTTGA-TTTACA
*
37165420 AAATTACTGAAATACCCTTG
1 AAATTACCGAAATACCCTTG
37165440 GTTTGTAATT
Statistics
Matches: 82, Mismatches: 16, Indels: 9
0.77 0.15 0.08
Matches are distributed among these distances:
27 57 0.70
28 7 0.09
29 18 0.22
ACGTcount: A:0.43, C:0.20, G:0.06, T:0.31
Consensus pattern (27 bp):
AAATTACCGAAATACCCTTGATTTACA
Found at i:37165526 original size:27 final size:26
Alignment explanation
Indices: 37165483--37165556 Score: 71
Period size: 27 Copynumber: 2.8 Consensus size: 26
37165473 AAATTACTAA
*
37165483 AATACCCCTAATA-GGTAAAAAGACCGT
1 AATACCCCT-GTAGGGTAAAAA-ACCGT
*
37165510 AA-AGCCCCTGTAGGGTAAAGTAACCGT
1 AATA-CCCCTGTAGGGTAAA-AAACCGT
*
37165537 AATACCCCTGTATGGTAAAA
1 AATACCCCTGTAGGGTAAAA
37165557 TGATGAATAT
Statistics
Matches: 39, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
26 3 0.08
27 34 0.87
28 2 0.05
ACGTcount: A:0.39, C:0.22, G:0.19, T:0.20
Consensus pattern (26 bp):
AATACCCCTGTAGGGTAAAAAACCGT
Found at i:37169034 original size:27 final size:27
Alignment explanation
Indices: 37168997--37169083 Score: 120
Period size: 27 Copynumber: 3.2 Consensus size: 27
37168987 ATTACCAAAG
* *
37168997 TACCCTCGATTTATAAAATTACTATTT
1 TACCCTTGATTTACAAAATTACTATTT
* * *
37169024 TATCCTTGATTTACAGAATTACTGTTT
1 TACCCTTGATTTACAAAATTACTATTT
*
37169051 TACCCTTGATTTACAAAATTACCATTT
1 TACCCTTGATTTACAAAATTACTATTT
37169078 TACCCT
1 TACCCT
37169084 CGACTGTGAA
Statistics
Matches: 51, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 51 1.00
ACGTcount: A:0.30, C:0.21, G:0.06, T:0.44
Consensus pattern (27 bp):
TACCCTTGATTTACAAAATTACTATTT
Found at i:37169150 original size:27 final size:27
Alignment explanation
Indices: 37169092--37169216 Score: 119
Period size: 27 Copynumber: 4.6 Consensus size: 27
37169082 CTCGACTGTG
* **
37169092 AAATTACTAAAATACCCTTA-TAGGGTA
1 AAATTACCAAAATACCCTTAGT-TTGTA
*
37169119 GAATTACCAAAATACCCTTAGTTTGTA
1 AAATTACCAAAATACCCTTAGTTTGTA
* * *
37169146 AAATTACCAAAATACCAC-TGGTTTATG
1 AAATTACCAAAATACC-CTTAGTTTGTA
* * * *
37169173 AAATTATCGAAATACCCTCAATTTGTA
1 AAATTACCAAAATACCCTTAGTTTGTA
37169200 AAATTACCAAAATACCC
1 AAATTACCAAAATACCC
37169217 CTAATTTACA
Statistics
Matches: 78, Mismatches: 17, Indels: 6
0.77 0.17 0.06
Matches are distributed among these distances:
26 1 0.01
27 75 0.96
28 2 0.03
ACGTcount: A:0.42, C:0.19, G:0.09, T:0.30
Consensus pattern (27 bp):
AAATTACCAAAATACCCTTAGTTTGTA
Found at i:37169231 original size:27 final size:27
Alignment explanation
Indices: 37169120--37169243 Score: 108
Period size: 27 Copynumber: 4.6 Consensus size: 27
37169110 TATAGGGTAG
* * *
37169120 AATTACCAAAATACCCTTAGTTTGTAA
1 AATTACCAAAATACCCCTAATTTATAA
* ** *
37169147 AATTACCAAAATACCACTGGTTTATGA
1 AATTACCAAAATACCCCTAATTTATAA
* * *
37169174 AATTATCGAAATA-CCCTCAATTTGTAA
1 AATTACCAAAATACCCCT-AATTTATAA
* *
37169201 AATTACCAAAATACCCCTAATTTACAC
1 AATTACCAAAATACCCCTAATTTATAA
37169228 AATTA-CAGAAATACCC
1 AATTACCA-AAATACCC
37169244 TTGACTTTTT
Statistics
Matches: 77, Mismatches: 17, Indels: 6
0.77 0.17 0.06
Matches are distributed among these distances:
26 5 0.06
27 68 0.88
28 4 0.05
ACGTcount: A:0.43, C:0.22, G:0.06, T:0.29
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAATTTATAA
Found at i:37169232 original size:54 final size:54
Alignment explanation
Indices: 37169120--37169244 Score: 148
Period size: 54 Copynumber: 2.3 Consensus size: 54
37169110 TATAGGGTAG
* * ** *
37169120 AATTACCA-AAATACCCTTAGTTTGTAAAATTACCAAAATACCACTGGTTTATGA
1 AATTA-CAGAAATACCCTCAATTTGTAAAATTACCAAAATACCACTAATTTATCA
*
37169174 AATTATC-GAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAATTTA-CA
1 AATTA-CAGAAATACCCTCAATTTGTAAAATTACCAAAATACCACTAATTTATCA
37169227 CAATTACAGAAATACCCT
1 -AATTACAGAAATACCCT
37169245 TGACTTTTTA
Statistics
Matches: 61, Mismatches: 7, Indels: 6
0.82 0.09 0.08
Matches are distributed among these distances:
53 2 0.03
54 59 0.97
ACGTcount: A:0.42, C:0.22, G:0.06, T:0.30
Consensus pattern (54 bp):
AATTACAGAAATACCCTCAATTTGTAAAATTACCAAAATACCACTAATTTATCA
Found at i:37170304 original size:24 final size:25
Alignment explanation
Indices: 37170233--37170302 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
37170223 AGGAAGTCCT
* *
37170233 AAAAGGGCTATGCCCCAGTTTATCG
1 AAAAGGGCTTTGCCCCAGTTTATCA
37170258 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
* *
37170283 AAAAGGACTTTGCGCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
37170303 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCA
Found at i:37173533 original size:16 final size:16
Alignment explanation
Indices: 37173514--37173544 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
37173504 TGAAATGCAA
37173514 AAATGCCGAAAAGCTG
1 AAATGCCGAAAAGCTG
37173530 AAATGCCGAAAAGCT
1 AAATGCCGAAAAGCT
37173545 AAAAGTTTGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.45, C:0.19, G:0.23, T:0.13
Consensus pattern (16 bp):
AAATGCCGAAAAGCTG
Found at i:37173815 original size:29 final size:29
Alignment explanation
Indices: 37173757--37173816 Score: 70
Period size: 30 Copynumber: 2.1 Consensus size: 29
37173747 GTGAGCATGA
*
37173757 ATATAATGTGTTATGGGCCTAAAAGGGCC
1 ATATAATGTGTTATGGGCCTAAAAGAGCC
*
37173786 ATATAAATGTGATT-TGGGCCT-AACGAGCC
1 ATAT-AATGTG-TTATGGGCCTAAAAGAGCC
37173815 AT
1 AT
37173817 GTGAATATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
29 12 0.44
30 13 0.48
31 2 0.07
ACGTcount: A:0.32, C:0.15, G:0.25, T:0.28
Consensus pattern (29 bp):
ATATAATGTGTTATGGGCCTAAAAGAGCC
Found at i:37187409 original size:3 final size:3
Alignment explanation
Indices: 37187401--37187429 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
37187391 CATTATATAC
37187401 ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
37187430 AAATCATATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:37187501 original size:19 final size:19
Alignment explanation
Indices: 37187450--37187504 Score: 55
Period size: 19 Copynumber: 3.0 Consensus size: 19
37187440 TTTAACCCAC
37187450 ACTATATATATATTTT-TGTT
1 ACTATATAT-TATTTTAT-TT
*
37187470 AAT-TAT-TTA-TTTATTT
1 ACTATATATTATTTTATTT
37187486 ACTATATATTATTTTATTT
1 ACTATATATTATTTTATTT
37187505 TAAACTAATA
Statistics
Matches: 29, Mismatches: 2, Indels: 9
0.73 0.05 0.22
Matches are distributed among these distances:
16 7 0.24
17 6 0.21
18 4 0.14
19 10 0.34
20 2 0.07
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.64
Consensus pattern (19 bp):
ACTATATATTATTTTATTT
Found at i:37193139 original size:40 final size:40
Alignment explanation
Indices: 37193095--37193249 Score: 226
Period size: 40 Copynumber: 3.9 Consensus size: 40
37193085 GGATATAGCT
* *
37193095 ACTCGCTCAAATGCCTTCGGGACATAGCCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
* *
37193135 ACTCGC-CCAATGCCTTCGGGACTTAGCCCGGATT-TGGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG-TTATAGTA
*
37193174 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG-AATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTA
37193214 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
37193250 CATCCGAATA
Statistics
Matches: 103, Mismatches: 7, Indels: 10
0.86 0.06 0.08
Matches are distributed among these distances:
39 33 0.32
40 69 0.67
41 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.23, T:0.25
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
Found at i:37193214 original size:79 final size:80
Alignment explanation
Indices: 37193095--37193245 Score: 243
Period size: 79 Copynumber: 1.9 Consensus size: 80
37193085 GGATATAGCT
* * *
37193095 ACTCGCTCAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGC-CCAATGCCTTCGGGACTT
1 ACTCGCACAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTT
37193159 AGCCCGGATTTGGTA
66 AGCCCGGATTTGGTA
*
37193174 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGA-ATTAGTAACTCGCACAAATGCCTTCGGGACT
1 ACTCGCACAAATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACT
37193238 TAGCCCGG
65 TAGCCCGG
37193246 TTATCATCCG
Statistics
Matches: 66, Mismatches: 4, Indels: 3
0.90 0.05 0.04
Matches are distributed among these distances:
78 1 0.02
79 41 0.62
80 24 0.36
ACGTcount: A:0.23, C:0.30, G:0.24, T:0.23
Consensus pattern (80 bp):
ACTCGCACAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTT
AGCCCGGATTTGGTA
Found at i:37196500 original size:13 final size:13
Alignment explanation
Indices: 37196478--37196520 Score: 61
Period size: 13 Copynumber: 3.3 Consensus size: 13
37196468 CTTCTATTTC
37196478 AAAAAA-AAAAGA
1 AAAAAAGAAAAGA
37196490 AAAAAAGAAAAGA
1 AAAAAAGAAAAGA
*
37196503 AAAAGAGAAAAAGA
1 AAAAAAG-AAAAGA
37196517 AAAA
1 AAAA
37196521 GACGGAGAGG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
12 6 0.21
13 12 0.43
14 10 0.36
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (13 bp):
AAAAAAGAAAAGA
Found at i:37196505 original size:19 final size:19
Alignment explanation
Indices: 37196478--37196520 Score: 68
Period size: 19 Copynumber: 2.3 Consensus size: 19
37196468 CTTCTATTTC
37196478 AAAAAAAAAAGAAAAAAAG
1 AAAAAAAAAAGAAAAAAAG
* *
37196497 AAAAGAAAAAGAGAAAAAG
1 AAAAAAAAAAGAAAAAAAG
37196516 AAAAA
1 AAAAA
37196521 GACGGAGAGG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (19 bp):
AAAAAAAAAAGAAAAAAAG
Found at i:37197533 original size:44 final size:45
Alignment explanation
Indices: 37197392--37197571 Score: 174
Period size: 44 Copynumber: 4.1 Consensus size: 45
37197382 CAAAGAAACA
* * * *
37197392 AGATTTGGCATCCCTATGTTTATAGGGAA-TAGATCAAAGATAGT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAGATCGAAGATAGC
* * * * * * * **
37197436 AGATCTGACATTCCTGTGCTTACAGCGAAGC-AGATTGAAGATTTC
1 AGATTTGGCATCCCTGTGTTTATAGGGAA-CAAGATCGAAGATAGC
*
37197481 AGCA--TGGCATCCCTGTGTTTATAGGGAACAAG-TTGAAGATAGC
1 AG-ATTTGGCATCCCTGTGTTTATAGGGAACAAGATCGAAGATAGC
37197524 AGATTTGGCATCCCTGTGTTTATAGGGAACAA-ATCGAAGATAGC
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAGATCGAAGATAGC
37197568 AGAT
1 AGAT
37197572 CTAACCTTCA
Statistics
Matches: 109, Mismatches: 20, Indels: 14
0.76 0.14 0.10
Matches are distributed among these distances:
42 1 0.01
43 12 0.11
44 84 0.77
45 11 0.10
46 1 0.01
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28
Consensus pattern (45 bp):
AGATTTGGCATCCCTGTGTTTATAGGGAACAAGATCGAAGATAGC
Found at i:37197771 original size:119 final size:119
Alignment explanation
Indices: 37197560--37198037 Score: 776
Period size: 119 Copynumber: 4.0 Consensus size: 119
37197550 GAACAAATCG
* *
37197560 AAGATAGCAGATCTAACCTTCAGATATTTATACTGAAGTAGATCCAAGATGATTTGGCATTCTTG
1 AAGATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTG
* *
37197625 TGTTTACAAGGAACAAATCGAGGACATAGTAGATTTGACTCTTAGACGTTCTCA
66 TGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCA
* *
37197679 AAGATAGCAGATCTAACCTTCAAATGTTTATACTAAAGCAGATCCAAGATGATTTGGCATTCTTG
1 AAGATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTG
*
37197744 TGTTTACAAGGAACAAATTGAGGACATAGCAGATTTGACTCTCAGACGTTCTCA
66 TGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCA
* *
37197798 AATATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTG
1 AAGATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTG
*
37197863 TGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTTCTCA
66 TGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCA
* * * * *
37197917 AATATAACAGATCTAACTTTCAGATGTTTATACTGAAGCAGATCCAAGATGGTTTGGCATCCTTG
1 AAGATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTG
* * * * *
37197982 TGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCAAATGTTCTCA
66 TGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCA
37198036 AA
1 AA
37198038 CAGACTCAAG
Statistics
Matches: 337, Mismatches: 22, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
119 337 1.00
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.30
Consensus pattern (119 bp):
AAGATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTG
TGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCA
Found at i:37198067 original size:83 final size:83
Alignment explanation
Indices: 37197961--37198312 Score: 650
Period size: 83 Copynumber: 4.2 Consensus size: 83
37197951 GAAGCAGATC
37197961 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
37198026 AATGTTCTCAAACAGACT
66 AATGTTCTCAAACAGACT
37198044 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
37198109 AATGTTCTCAAACAGACT
66 AATGTTCTCAAACAGACT
*
37198127 CAAGATGGTTTGGCATCATTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
37198192 AATGTTCTCAAACAGACT
66 AATGTTCTCAAACAGACT
* * *
37198210 CAAGATGGTTTGGCATCATTGTGCTTACAAGGAAAAAATCGAGGACATTGCAGATATGACTCTTA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
37198275 AATGTTCTCAAACAGACT
66 AATGTTCTCAAACAGACT
* *
37198293 CAAGATGATTTGACATCCTT
1 CAAGATGGTTTGGCATCCTT
37198313 ACAAATCGAA
Statistics
Matches: 263, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
83 263 1.00
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.27
Consensus pattern (83 bp):
CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
AATGTTCTCAAACAGACT
Found at i:37200123 original size:27 final size:28
Alignment explanation
Indices: 37200073--37200161 Score: 80
Period size: 27 Copynumber: 3.3 Consensus size: 28
37200063 ATATTTTCAC
*
37200073 ATATATTATATATTTATTA-A--TTATTT
1 ATATATTATAT-TATATTACATGTTATTT
* *
37200099 ATATA-TATATTGTTTTACATGTTATTT
1 ATATATTATATTATATTACATGTTATTT
* *
37200126 -TATATTATATTATATTACATTTTTTTT
1 ATATATTATATTATATTACATGTTATTT
*
37200153 ATATGTTAT
1 ATATATTAT
37200162 GTATATCATG
Statistics
Matches: 51, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
24 5 0.10
25 6 0.12
26 9 0.18
27 24 0.47
28 7 0.14
ACGTcount: A:0.33, C:0.02, G:0.03, T:0.62
Consensus pattern (28 bp):
ATATATTATATTATATTACATGTTATTT
Found at i:37200295 original size:19 final size:19
Alignment explanation
Indices: 37200244--37200298 Score: 55
Period size: 19 Copynumber: 3.0 Consensus size: 19
37200234 TTTAACCCAC
37200244 ACTATATATATATTTT-TGTT
1 ACTATATAT-TATTTTAT-TT
*
37200264 AAT-TAT-TTA-TTTATTT
1 ACTATATATTATTTTATTT
37200280 ACTATATATTATTTTATTT
1 ACTATATATTATTTTATTT
37200299 TAAACTAATA
Statistics
Matches: 29, Mismatches: 2, Indels: 9
0.73 0.05 0.22
Matches are distributed among these distances:
16 7 0.24
17 6 0.21
18 4 0.14
19 10 0.34
20 2 0.07
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.64
Consensus pattern (19 bp):
ACTATATATTATTTTATTT
Found at i:37203953 original size:26 final size:23
Alignment explanation
Indices: 37203901--37203954 Score: 72
Period size: 23 Copynumber: 2.3 Consensus size: 23
37203891 TTACCGCTAT
37203901 TAGCAGCTTTGCTGCGTTACTAA
1 TAGCAGCTTTGCTGCGTTACTAA
* * *
37203924 TAGCAGTTTTGTTGCGTTACTAT
1 TAGCAGCTTTGCTGCGTTACTAA
*
37203947 TAGTAGCT
1 TAGCAGCT
37203955 ACGCTGCGAT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.20, C:0.17, G:0.22, T:0.41
Consensus pattern (23 bp):
TAGCAGCTTTGCTGCGTTACTAA
Found at i:37207045 original size:39 final size:38
Alignment explanation
Indices: 37206998--37207113 Score: 151
Period size: 39 Copynumber: 3.0 Consensus size: 38
37206988 CCGGACATAT
* * *
37206998 TTCCAGCACGTAGCCTGTGGACCTTAAGTCCAGATATAA
1 TTCCAGCACATAGCCTGCGGACCCTAAGTCC-GATATAA
* *
37207037 TTCGAGCACATAGCTTGCGGACCCTAAGTCCGAATATAA
1 TTCCAGCACATAGCCTGCGGACCCTAAGTCCG-ATATAA
*
37207076 TTCCAGTACATAGCCTGCGGACCCTAAGTCCGGATATA
1 TTCCAGCACATAGCCTGCGGACCCTAAGTCC-GATATA
37207114 CATCACTGAA
Statistics
Matches: 67, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
38 1 0.01
39 65 0.97
40 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (38 bp):
TTCCAGCACATAGCCTGCGGACCCTAAGTCCGATATAA
Found at i:37214763 original size:40 final size:40
Alignment explanation
Indices: 37214665--37214849 Score: 180
Period size: 40 Copynumber: 4.7 Consensus size: 40
37214655 GCTCCTCGTT
* * * *
37214665 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTACCTCGCA
* *
37214705 C-AATGCCTTCGGGACTTAACCCGGATTTAATACCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTACCTCGCA
* * * *
37214744 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-ATTTAGTACCTCGCA
* * * * *
37214784 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-ACCTCGCA
37214825 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
37214850 CAGCATTCAA
Statistics
Matches: 119, Mismatches: 20, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
39 38 0.32
40 65 0.55
41 16 0.13
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTACCTCGCA
Found at i:37214858 original size:41 final size:41
Alignment explanation
Indices: 37214781--37214858 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
37214771 TTTGTATCTC
* * *
37214781 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
37214822 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
37214859 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:37225776 original size:40 final size:40
Alignment explanation
Indices: 37225732--37225837 Score: 158
Period size: 40 Copynumber: 2.6 Consensus size: 40
37225722 ATCTATCTTA
*
37225732 AATCGCACACTAAGTTCCATATATAAACAAAGCTATGTCG
1 AATCGCACACTAAGTGCCATATATAAACAAAGCTATGTCG
* ** *
37225772 AATCGTACACTAAGTGCCATATATAGCCGAAGCTATGTCG
1 AATCGCACACTAAGTGCCATATATAAACAAAGCTATGTCG
*
37225812 AATCACACACTAAGTGCCATATATAA
1 AATCGCACACTAAGTGCCATATATAA
37225838 CCGATTTTTC
Statistics
Matches: 58, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 58 1.00
ACGTcount: A:0.39, C:0.23, G:0.14, T:0.25
Consensus pattern (40 bp):
AATCGCACACTAAGTGCCATATATAAACAAAGCTATGTCG
Found at i:37231267 original size:40 final size:40
Alignment explanation
Indices: 37231202--37231331 Score: 181
Period size: 40 Copynumber: 3.2 Consensus size: 40
37231192 GGATGATAAT
*
37231202 CGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATA-TC
* * *
37231242 CGGGGTAAGCCCCGAAGGCATTTGTGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATATC
* * *
37231282 CGGGCTAAGTCCCGAAGACATTTGTGGGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATATC
37231322 CGGGCTAAGT
1 CGGGCTAAGT
37231332 GTTACTATAT
Statistics
Matches: 81, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
40 80 0.99
41 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATATC
Found at i:37231337 original size:21 final size:21
Alignment explanation
Indices: 37231311--37231352 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
37231301 ATTTGTGGGA
37231311 GTTACTATATCCGGGCTAAGT
1 GTTACTATATCCGGGCTAAGT
37231332 GTTACTATATCCGGGCTAAGT
1 GTTACTATATCCGGGCTAAGT
37231353 CCCGAAGGCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.33
Consensus pattern (21 bp):
GTTACTATATCCGGGCTAAGT
Found at i:37231366 original size:61 final size:61
Alignment explanation
Indices: 37231271--37231392 Score: 208
Period size: 61 Copynumber: 2.0 Consensus size: 61
37231261 ATTTGTGCGA
* * *
37231271 GTTACTATATCCGGGCTAAGTCCCGAAGACATTTGTGGGAGTTACTATATCCGGGCTAAGT
1 GTTACTATATCCGGGCTAAGTCCCGAAGACATTTGTGCGAGTTACTATAACCGAGCTAAGT
*
37231332 GTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGAGCTAAGT
1 GTTACTATATCCGGGCTAAGTCCCGAAGACATTTGTGCGAGTTACTATAACCGAGCTAAGT
37231393 CCCAAAGGCA
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
61 57 1.00
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.29
Consensus pattern (61 bp):
GTTACTATATCCGGGCTAAGTCCCGAAGACATTTGTGCGAGTTACTATAACCGAGCTAAGT
Found at i:37231390 original size:40 final size:39
Alignment explanation
Indices: 37231332--37231439 Score: 137
Period size: 40 Copynumber: 2.7 Consensus size: 39
37231322 CGGGCTAAGT
*
37231332 GTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGA
1 GTTACTATATCC-GGCTAAGTCCCGAAGGCATTTGAGCGA
* *
37231372 GTTACTATAACCGAGCTAAGTCCCAAAGGCATTTGAGCGA
1 GTTACTATATCCG-GCTAAGTCCCGAAGGCATTTGAGCGA
* *
37231412 G-TAGCTATATCTGGCTAAATCCCGAAGG
1 GTTA-CTATATCCGGCTAAGTCCCGAAGG
37231440 TACTTGGTTT
Statistics
Matches: 59, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
39 16 0.27
40 43 0.73
ACGTcount: A:0.28, C:0.22, G:0.25, T:0.25
Consensus pattern (39 bp):
GTTACTATATCCGGCTAAGTCCCGAAGGCATTTGAGCGA
Found at i:37231420 original size:101 final size:101
Alignment explanation
Indices: 37231240--37231422 Score: 278
Period size: 101 Copynumber: 1.8 Consensus size: 101
37231230 AGTGACTAAT
* * * *
37231240 TCCGGGGTAAGCCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGACATTT
1 TCCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACTATAACCGAGCTAAGTCCCAAAGACATTT
* *
37231305 GTGGGAGTTACTATATCCGGGCTAAGTGTTACTATA
66 GAGCGAGTTACTATATCCGGGCTAAGTGTTACTATA
* *
37231341 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGAGCTAAGTCCCAAAGGCATTT
1 TCCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACTATAACCGAGCTAAGTCCCAAAGACATTT
37231406 GAGCGAG-TAGCTATATC
66 GAGCGAGTTA-CTATATC
37231423 TGGCTAAATC
Statistics
Matches: 73, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
100 2 0.03
101 71 0.97
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (101 bp):
TCCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACTATAACCGAGCTAAGTCCCAAAGACATTT
GAGCGAGTTACTATATCCGGGCTAAGTGTTACTATA
Found at i:37237446 original size:40 final size:40
Alignment explanation
Indices: 37237391--37237608 Score: 343
Period size: 40 Copynumber: 5.5 Consensus size: 40
37237381 CGGATGATAA
* *
37237391 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
*
37237431 CCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
37237471 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
37237511 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
37237551 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
37237591 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
37237609 TACTTGGTTT
Statistics
Matches: 168, Mismatches: 8, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
39 17 0.10
40 150 0.89
41 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:37245678 original size:40 final size:40
Alignment explanation
Indices: 37245620--37245837 Score: 307
Period size: 40 Copynumber: 5.5 Consensus size: 40
37245610 CGGATGATAA
* *
37245620 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
* *
37245660 CCAGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
37245700 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
37245740 CCGGGCTAAGTCTCGAAGGCATTTGTGTGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
37245780 CCGGGATAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
37245820 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
37245838 TACTTGGTTT
Statistics
Matches: 160, Mismatches: 16, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
39 16 0.10
40 143 0.89
41 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:37247479 original size:31 final size:31
Alignment explanation
Indices: 37247393--37247479 Score: 138
Period size: 31 Copynumber: 2.8 Consensus size: 31
37247383 CATAGGATTC
* * *
37247393 CGATATGTGATGTGGGAGTAAGACAGTGGCAT
1 CGATATATG-TGTGCGAGTAAGACCGTGGCAT
37247425 CGATATATGTGTGCGAGTAAGACCGTGGCAT
1 CGATATATGTGTGCGAGTAAGACCGTGGCAT
37247456 CGATATATGTGTGCGAGTAAGACC
1 CGATATATGTGTGCGAGTAAGACC
37247480 ACGTTTAATA
Statistics
Matches: 52, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
31 44 0.85
32 8 0.15
ACGTcount: A:0.28, C:0.14, G:0.33, T:0.25
Consensus pattern (31 bp):
CGATATATGTGTGCGAGTAAGACCGTGGCAT
Found at i:37247518 original size:56 final size:56
Alignment explanation
Indices: 37247456--37247591 Score: 191
Period size: 56 Copynumber: 2.4 Consensus size: 56
37247446 ACCGTGGCAT
* ***
37247456 CGATATATGTGTGCGAGTAAGACCACGTTTAATATGTTGGCATTGATATGTGACTC
1 CGATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCACCAATATGTGACTC
* * * *
37247512 TGATATATGTGTGCGAGTAAGACCATGTTTTATACGTTGGCACCAATATTTGACTC
1 CGATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCACCAATATGTGACTC
*
37247568 CGATATATGTGTGTGAGTAAGACC
1 CGATATATGTGTGCGAGTAAGACC
37247592 CTGTCTAGGA
Statistics
Matches: 70, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
56 70 1.00
ACGTcount: A:0.27, C:0.15, G:0.24, T:0.34
Consensus pattern (56 bp):
CGATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCACCAATATGTGACTC
Found at i:37255479 original size:8 final size:8
Alignment explanation
Indices: 37255466--37255499 Score: 50
Period size: 8 Copynumber: 4.2 Consensus size: 8
37255456 AATGGCAAAG
37255466 GCTGAAAA
1 GCTGAAAA
37255474 GCTGAAAA
1 GCTGAAAA
*
37255482 GCCGAAAA
1 GCTGAAAA
*
37255490 GGTGAAAA
1 GCTGAAAA
37255498 GC
1 GC
37255500 CCAAATGTGG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.47, C:0.15, G:0.29, T:0.09
Consensus pattern (8 bp):
GCTGAAAA
Found at i:37256242 original size:34 final size:33
Alignment explanation
Indices: 37256200--37256264 Score: 87
Period size: 34 Copynumber: 1.9 Consensus size: 33
37256190 TTATTTGCAT
*
37256200 TCTGTACTGAGATGGGCT-AAGGCCCAGACTGCC
1 TCTGTACTGAAATGGGCTCAA-GCCCAGACTGCC
*
37256233 TCTGTTACTGAAATGGGCTCAAGCCTAGACTG
1 TCTG-TACTGAAATGGGCTCAAGCCCAGACTG
37256265 ATACTTTTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
33 4 0.14
34 22 0.79
35 2 0.07
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.25
Consensus pattern (33 bp):
TCTGTACTGAAATGGGCTCAAGCCCAGACTGCC
Found at i:37257726 original size:56 final size:56
Alignment explanation
Indices: 37257664--37257798 Score: 234
Period size: 56 Copynumber: 2.4 Consensus size: 56
37257654 CCATGGCATT
* *
37257664 GATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATTTGTGACTTC
1 GATATATGTGTGCGAGTAAGACCACGTTAAATACGTTGGCATCGATATGTGACTTC
*
37257720 TATATATGTGTGCGAGTAAGACCACGTTAAATACGTTGGCATCGATATGTGACTTC
1 GATATATGTGTGCGAGTAAGACCACGTTAAATACGTTGGCATCGATATGTGACTTC
*
37257776 GATATATGTGTGTGAGTAAGACC
1 GATATATGTGTGCGAGTAAGACC
37257799 CTGTCGAGGA
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
56 74 1.00
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.33
Consensus pattern (56 bp):
GATATATGTGTGCGAGTAAGACCACGTTAAATACGTTGGCATCGATATGTGACTTC
Found at i:37257816 original size:56 final size:56
Alignment explanation
Indices: 37257664--37257827 Score: 206
Period size: 56 Copynumber: 2.9 Consensus size: 56
37257654 CCATGGCATT
** * *
37257664 GATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATTTGTGACTTC
1 GATATATGTGTGCGAGTAAGACCACGTCAAAGACGTTGGCATCGATATGTGACTTC
* * *
37257720 TATATATGTGTGCGAGTAAGACCACGTTAAATACGTTGGCATCGATATGTGACTTC
1 GATATATGTGTGCGAGTAAGACCACGTCAAAGACGTTGGCATCGATATGTGACTTC
* * *
37257776 GATATATGTGTGTGAGTAAGACC-CTGTCGAGGACAG-TGGCATCGATATGTGA
1 GATATATGTGTGCGAGTAAGACCAC-GTCAAAGAC-GTTGGCATCGATATGTGA
37257828 TTACATGTAA
Statistics
Matches: 97, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
55 1 0.01
56 95 0.98
57 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (56 bp):
GATATATGTGTGCGAGTAAGACCACGTCAAAGACGTTGGCATCGATATGTGACTTC
Found at i:37263455 original size:10 final size:10
Alignment explanation
Indices: 37263436--37263482 Score: 51
Period size: 10 Copynumber: 4.6 Consensus size: 10
37263426 TTCTCAATTT
37263436 ATCA-ACCAA
1 ATCATACCAA
37263445 ATCATACCAA
1 ATCATACCAA
*
37263455 ATCTAAACCAAA
1 ATC-ATACC-AA
37263467 ATCATACCAA
1 ATCATACCAA
*
37263477 ACCATA
1 ATCATA
37263483 TTATTCAATA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
9 4 0.12
10 15 0.47
11 8 0.25
12 5 0.16
ACGTcount: A:0.53, C:0.30, G:0.00, T:0.17
Consensus pattern (10 bp):
ATCATACCAA
Found at i:37264083 original size:67 final size:67
Alignment explanation
Indices: 37264010--37264145 Score: 272
Period size: 67 Copynumber: 2.0 Consensus size: 67
37264000 TTCTCATACT
37264010 TATATCACATATCATCACTTGTACATATACTTACCTTTGCTCTCAAACATAGTATACATTTCAAA
1 TATATCACATATCATCACTTGTACATATACTTACCTTTGCTCTCAAACATAGTATACATTTCAAA
37264075 CG
66 CG
37264077 TATATCACATATCATCACTTGTACATATACTTACCTTTGCTCTCAAACATAGTATACATTTCAAA
1 TATATCACATATCATCACTTGTACATATACTTACCTTTGCTCTCAAACATAGTATACATTTCAAA
37264142 CG
66 CG
37264144 TA
1 TA
37264146 CTAGAATCGG
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
67 69 1.00
ACGTcount: A:0.35, C:0.24, G:0.06, T:0.36
Consensus pattern (67 bp):
TATATCACATATCATCACTTGTACATATACTTACCTTTGCTCTCAAACATAGTATACATTTCAAA
CG
Found at i:37264349 original size:42 final size:43
Alignment explanation
Indices: 37264281--37264407 Score: 127
Period size: 44 Copynumber: 2.9 Consensus size: 43
37264271 TCTTGCATGT
*
37264281 AATCAAATATCGATGCCACTATCCCAGA-TAGAGTCTTACACA-A
1 AATCAAATATCGATGCCAATATCCCAGACT-G-GTCTTACACATA
*
37264324 AATCAAATA-CGATGCCAATGTCCCAGACGTGGTCTTACACATA
1 AATCAAATATCGATGCCAATATCCCAGAC-TGGTCTTACACATA
* * * *
37264367 AATCATAA-GTCCATGGCAACATCCCAGACGTGGTCTTACAC
1 AATCA-AATATCGATGCCAATATCCCAGAC-TGGTCTTACAC
37264408 GAATGCACAT
Statistics
Matches: 72, Mismatches: 7, Indels: 9
0.82 0.08 0.10
Matches are distributed among these distances:
42 26 0.36
43 16 0.22
44 30 0.42
ACGTcount: A:0.35, C:0.27, G:0.15, T:0.23
Consensus pattern (43 bp):
AATCAAATATCGATGCCAATATCCCAGACTGGTCTTACACATA
Found at i:37270797 original size:40 final size:40
Alignment explanation
Indices: 37270727--37270901 Score: 203
Period size: 40 Copynumber: 4.4 Consensus size: 40
37270717 AAGCCAAGTA
* * * * *
37270727 CCTTCGGGATTTAACC-AGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCTGGATATAG-TAACTCGCACAAATG
* * *
37270766 CCTTCGGGACATAGCCTGGATATAATAACTCGCACCAATG
1 CCTTCGGGACTTAGCCTGGATATAGTAACTCGCACAAATG
*
37270806 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCTGGATATAGTAACTCGCACAAATG
* * *
37270846 CCTTCGGGACTTAGCCTGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCTGGATA-TAGTAACTCGCACAAATG
37270886 CCTTCGGGACTTAGCC
1 CCTTCGGGACTTAGCC
37270902 CGGTTATCAT
Statistics
Matches: 118, Mismatches: 15, Indels: 5
0.86 0.11 0.04
Matches are distributed among these distances:
39 15 0.13
40 103 0.87
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCTGGATATAGTAACTCGCACAAATG
Found at i:37271667 original size:21 final size:21
Alignment explanation
Indices: 37271641--37271683 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
37271631 TACTAACATT
*
37271641 TTTCACTTC-ACTTTACTACCA
1 TTTCACATCTACTTT-CTACCA
37271662 TTTCACATCTACTTTCTACCA
1 TTTCACATCTACTTTCTACCA
37271683 T
1 T
37271684 GGTCGAATGC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 15 0.75
22 5 0.25
ACGTcount: A:0.23, C:0.33, G:0.00, T:0.44
Consensus pattern (21 bp):
TTTCACATCTACTTTCTACCA
Found at i:37278807 original size:40 final size:40
Alignment explanation
Indices: 37278737--37278954 Score: 237
Period size: 40 Copynumber: 5.5 Consensus size: 40
37278727 AAGCCAAGTA
* * * * *
37278737 CCTTCGGGATTTAACCGA-ATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCAGATATAG-TAACTCGCACAAATG
* *
37278776 CCTTCGGGACATAGCCCAGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCAGATATAGTAACTCGCACAAATG
* *
37278816 CCTTCAGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCAGATATAGTAACTCGCACAAATG
* *
37278856 CCTTCCGGACTTAGCCC-GAATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCAG-ATATAGTAACTCGCACAAATG
* * * * *
37278896 CCTTCGGAACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCAGATA-TAGTAACTCGCACAAATG
37278936 CCTTCGGGACTTAGCCCAG
1 CCTTCGGGACTTAGCCCAG
37278955 TTATCATCCA
Statistics
Matches: 154, Mismatches: 20, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
39 17 0.11
40 136 0.88
41 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCAGATATAGTAACTCGCACAAATG
Found at i:37279005 original size:18 final size:19
Alignment explanation
Indices: 37278968--37279010 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
37278958 TCATCCAAAT
*
37278968 AATCATGCACATATCAATA
1 AATCATGCACACATCAATA
*
37278987 AATCATG-ACACATCTATA
1 AATCATGCACACATCAATA
*
37279005 ATTCAT
1 AATCAT
37279011 TTTCATAATT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
18 14 0.67
19 7 0.33
ACGTcount: A:0.44, C:0.21, G:0.05, T:0.30
Consensus pattern (19 bp):
AATCATGCACACATCAATA
Found at i:37280231 original size:6 final size:6
Alignment explanation
Indices: 37280213--37280249 Score: 51
Period size: 6 Copynumber: 6.5 Consensus size: 6
37280203 CATGAGAGCG
*
37280213 TTTCTT TTT-TT TTTCTT TTTCTT TCTC-T TTTCTT TTT
1 TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TTT
37280250 TTCATCATCA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
5 9 0.33
6 18 0.67
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (6 bp):
TTTCTT
Found at i:37280235 original size:17 final size:17
Alignment explanation
Indices: 37280213--37280249 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
37280203 CATGAGAGCG
* *
37280213 TTTCTTTTTTTTTTCTT
1 TTTCTTTCTCTTTTCTT
37280230 TTTCTTTCTCTTTTCTT
1 TTTCTTTCTCTTTTCTT
37280247 TTT
1 TTT
37280250 TTCATCATCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (17 bp):
TTTCTTTCTCTTTTCTT
Found at i:37280910 original size:12 final size:12
Alignment explanation
Indices: 37280893--37280923 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
37280883 GAAGTCTAAG
37280893 AACATAAAAATA
1 AACATAAAAATA
37280905 AACATAAAAATA
1 AACATAAAAATA
*
37280917 AAAATAA
1 AACATAA
37280924 GATAAACAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.77, C:0.06, G:0.00, T:0.16
Consensus pattern (12 bp):
AACATAAAAATA
Found at i:37284175 original size:34 final size:34
Alignment explanation
Indices: 37284137--37284233 Score: 115
Period size: 34 Copynumber: 2.9 Consensus size: 34
37284127 TCTGATTCTA
37284137 TACTGAATTGGGCTAAGGCCCACACTGATACTGC
1 TACTGAATTGGGCTAAGGCCCACACTGATACTGC
* * *
37284171 TACTGTAA-TGGGCTAAAGCTCACACTGATATTGC
1 TACTG-AATTGGGCTAAGGCCCACACTGATACTGC
** * *
37284205 TACTGGTTTGGGCTTAGGCCCAGACTGAT
1 TACTGAATTGGGCTAAGGCCCACACTGAT
37284234 CAACACTATA
Statistics
Matches: 52, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
34 50 0.96
35 2 0.04
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.28
Consensus pattern (34 bp):
TACTGAATTGGGCTAAGGCCCACACTGATACTGC
Found at i:37285720 original size:196 final size:195
Alignment explanation
Indices: 37285380--37285766 Score: 677
Period size: 196 Copynumber: 2.0 Consensus size: 195
37285370 TACTGTAGGT
*
37285380 CGTGGGTCGGTAACGGAACAACTCAGGTCTAATGGGGCTGAGATCTTTAGGGTATCGCTGGGGCT
1 CGTGGGTCGGTAACGGAACAACTCAGGTCTAATGGGGCTGAGATCTTTAGGGTATCACTGGGGCT
37285445 GTCCCTAATGTGGCTGAATATGTGATTGAGGCCACAGAGAGGACCATGGATGATCTCGACTACAC
66 GTCCCTAATGTGGCTGAATATGTGATTGAGGCCACAGAGAGGACCATGGATGATCTCGACTACAC
* **
37285510 CCTAAAGTAGAAACTGAAAGGTGCAGTGTCGTTGTTGTGAGATGAAGCCTATCAGTGGTGGAGGC
131 CCTAAAGCAGAAACTGAAAGGTGCAGTGTCGTTGTTGCAAGATGAAGCCTATCAGTGGTGGAGGC
*
37285575 CGTGGGTCGGTAACGGAACAACTCAGGTCTAATGGGGCTGAGATCTTTAAGGGTATCACTGGGGT
1 CGTGGGTCGGTAACGGAACAACTCAGGTCTAATGGGGCTGAGATCTTT-AGGGTATCACTGGGGC
* *
37285640 TGTCCCTAATGTGGCTGAATAT-TGGATTGAGGCCACAGAGAGGATCATGGATGATCTCGACTGC
65 TGTCCCTAATGTGGCTGAATATGT-GATTGAGGCCACAGAGAGGACCATGGATGATCTCGACTAC
*
37285704 ACCCTAGAGCAGAAACTGAAAGGTGCAGTGTCGTTGTTGCAAGATGAAGCCTATCAGTGGTGG
129 ACCCTAAAGCAGAAACTGAAAGGTGCAGTGTCGTTGTTGCAAGATGAAGCCTATCAGTGGTGG
37285767 CTTACTGTAA
Statistics
Matches: 182, Mismatches: 8, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
195 49 0.27
196 133 0.73
ACGTcount: A:0.25, C:0.18, G:0.33, T:0.24
Consensus pattern (195 bp):
CGTGGGTCGGTAACGGAACAACTCAGGTCTAATGGGGCTGAGATCTTTAGGGTATCACTGGGGCT
GTCCCTAATGTGGCTGAATATGTGATTGAGGCCACAGAGAGGACCATGGATGATCTCGACTACAC
CCTAAAGCAGAAACTGAAAGGTGCAGTGTCGTTGTTGCAAGATGAAGCCTATCAGTGGTGGAGGC
Found at i:37290342 original size:10 final size:12
Alignment explanation
Indices: 37290314--37290344 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
37290304 AGGAAGAAGA
37290314 GGAGAGATTTAG
1 GGAGAGATTTAG
37290326 GGAGAGATTTAG
1 GGAGAGATTTAG
37290338 GGAGAGA
1 GGAGAGA
37290345 ATTAAGGAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.35, C:0.00, G:0.45, T:0.19
Consensus pattern (12 bp):
GGAGAGATTTAG
Found at i:37290353 original size:12 final size:12
Alignment explanation
Indices: 37290313--37290353 Score: 55
Period size: 12 Copynumber: 3.4 Consensus size: 12
37290303 GAGGAAGAAG
37290313 AGGAGAGATTTA
1 AGGAGAGATTTA
*
37290325 GGGAGAGATTTA
1 AGGAGAGATTTA
* *
37290337 GGGAGAGAATTA
1 AGGAGAGATTTA
37290349 AGGAG
1 AGGAG
37290354 TGGATCAAGG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.39, C:0.00, G:0.41, T:0.20
Consensus pattern (12 bp):
AGGAGAGATTTA
Found at i:37292357 original size:51 final size:49
Alignment explanation
Indices: 37292186--37292360 Score: 208
Period size: 50 Copynumber: 3.5 Consensus size: 49
37292176 CTGGTACGAA
* * *
37292186 TAGTAG-CTGCACTTAGTACTACACATGCGACCAATTATCCTGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
** * *
37292234 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AATTATCCGGTACACG
* * * *
37292284 TAGTAGCCTGCACTTAGTACTACATACGTGATCGAAGTTATCGGGTACGCG
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCCGGTACACG
*
37292335 TAGTAGCTTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
37292361 TGCGACCTCA
Statistics
Matches: 107, Mismatches: 16, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
48 6 0.06
49 24 0.22
50 43 0.40
51 34 0.32
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.27
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
Found at i:37292368 original size:101 final size:98
Alignment explanation
Indices: 37292186--37292368 Score: 249
Period size: 101 Copynumber: 1.8 Consensus size: 98
37292176 CTGGTACGAA
* *
37292186 TAGTAGCTGCACTTAGTACTACACATGCGACCAATTATCCTGTACACGTAGTAGCCTGCACTTAG
1 TAGTAGCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACGTAGTAGCCTGCACTTAG
*
37292251 TACTACACACGTGACCTAACCATCTGATACACG
66 TACTACACACGCGACCTAACCATCTGATACACG
* * * * * *
37292284 TAGTAGCCTGCACTTAGTACTACATACGTGATCGAAGTTATCGGGTACGCGTAGTAGCTTGCACT
1 TAGTAG-CTGCACTTAGTACTACACACGCGA-CCAA-TTATCCGGTACACGTAGTAGCCTGCACT
*
37292349 TAGTACTACACATGCGACCT
63 TAGTACTACACACGCGACCT
37292369 CACAATAGAT
Statistics
Matches: 72, Mismatches: 10, Indels: 3
0.85 0.12 0.04
Matches are distributed among these distances:
98 6 0.08
99 21 0.29
100 3 0.04
101 42 0.58
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.27
Consensus pattern (98 bp):
TAGTAGCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACGTAGTAGCCTGCACTTAG
TACTACACACGCGACCTAACCATCTGATACACG
Found at i:37292634 original size:27 final size:27
Alignment explanation
Indices: 37292594--37292647 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
37292584 AGTTACAACC
* *
37292594 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
**
37292621 CATGTAACAATAATTTGGCATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
37292648 TCATATGACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.13, G:0.09, T:0.39
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:37298456 original size:34 final size:34
Alignment explanation
Indices: 37298381--37298445 Score: 94
Period size: 34 Copynumber: 1.9 Consensus size: 34
37298371 TCTATACTAA
* *
37298381 ATTGGGCTAAGGCCCATACTGGTACTGCTACCGT
1 ATTGGGCTAAGACCCATACTGATACTGCTACCGT
* *
37298415 AATGGGCTAAGACCCATACTGATATTGCTAC
1 ATTGGGCTAAGACCCATACTGATACTGCTAC
37298446 TGGTTTGGGC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
34 27 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (34 bp):
ATTGGGCTAAGACCCATACTGATACTGCTACCGT
Found at i:37300758 original size:17 final size:17
Alignment explanation
Indices: 37300738--37300772 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
37300728 AACAATTTTT
37300738 TTAAAAAATTTTAAAAA
1 TTAAAAAATTTTAAAAA
**
37300755 TTAATTAATTTTAAAAA
1 TTAAAAAATTTTAAAAA
37300772 T
1 T
37300773 ATTATGAGAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (17 bp):
TTAAAAAATTTTAAAAA
Found at i:37305027 original size:16 final size:16
Alignment explanation
Indices: 37305006--37305036 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
37304996 TAAAAATTAT
*
37305006 TATTAATTAAATTTCC
1 TATTAATAAAATTTCC
37305022 TATTAATAAAATTTC
1 TATTAATAAAATTTC
37305037 AATATAAATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.10, G:0.00, T:0.48
Consensus pattern (16 bp):
TATTAATAAAATTTCC
Found at i:37314153 original size:41 final size:42
Alignment explanation
Indices: 37314072--37314201 Score: 120
Period size: 41 Copynumber: 3.0 Consensus size: 42
37314062 CGTTTACTCG
** * ** *
37314072 ATGTCATAGTTCAACTATGGTCTTACACATCTTCATATATC-
1 ATGTCATAGCCCAACTATGGTCTTACACGTAATCACATATCA
37314113 ATGTCATAGCCCAACTATGGTCTTACACGTAATCACATATCACA
1 ATGTCATAGCCCAACTATGGTCTTACACGTAATCACATAT--CA
*
37314157 TATCGATGCCATAGCCCAGCTATGGTCTTACACG-AATCACATATC
1 -AT-G-T--CATAGCCCAACTATGGTCTTACACGTAATCACATATC
37314202 TCACTAATGC
Statistics
Matches: 74, Mismatches: 7, Indels: 11
0.80 0.08 0.12
Matches are distributed among these distances:
41 34 0.46
43 1 0.01
45 2 0.03
46 2 0.03
47 1 0.01
48 10 0.14
49 24 0.32
ACGTcount: A:0.31, C:0.26, G:0.12, T:0.31
Consensus pattern (42 bp):
ATGTCATAGCCCAACTATGGTCTTACACGTAATCACATATCA
Found at i:37314170 original size:49 final size:47
Alignment explanation
Indices: 37314108--37314232 Score: 157
Period size: 49 Copynumber: 2.6 Consensus size: 47
37314098 ACATCTTCAT
*
37314108 ATATCATGTCATAGCCCAACTATGGTCTTACACGTAATCACATATCAC
1 ATATCATGCCATAGCCCAACTATGGTCTTACACG-AATCACATATCAC
* *
37314156 ATATCGATGCCATAGCCCAGCTATGGTCTTACACGAATCACATATCTC
1 ATATC-ATGCCATAGCCCAACTATGGTCTTACACGAATCACATATCAC
*
37314204 ACTA--ATGCCATATCCCAGA-TATGGTCTTA
1 A-TATCATGCCATAGCCCA-ACTATGGTCTTA
37314233 TACAGTAGAA
Statistics
Matches: 69, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
46 22 0.32
48 18 0.26
49 29 0.42
ACGTcount: A:0.31, C:0.27, G:0.13, T:0.29
Consensus pattern (47 bp):
ATATCATGCCATAGCCCAACTATGGTCTTACACGAATCACATATCAC
Found at i:37314227 original size:46 final size:46
Alignment explanation
Indices: 37314128--37314279 Score: 153
Period size: 47 Copynumber: 3.2 Consensus size: 46
37314118 ATAGCCCAAC
* *
37314128 TATGGTCTTACACGTAATCACATATCACA-TATCGATGCCATAGCCCAGC
1 TATGGTCTTACACG-AATCACATATCACACTA---ATGCCATATCCCAGA
*
37314177 TATGGTCTTACACGAATCACATATCTCACTAATGCCATATCCCAGA
1 TATGGTCTTACACGAATCACATATCACACTAATGCCATATCCCAGA
* * ** * ** *
37314223 TATGGTCTTATACAGTAGAATATATCACACCGATGTCATATCCCAGA
1 TATGGTCTTACAC-GAATCACATATCACACTAATGCCATATCCCAGA
37314270 TATGGTCTTA
1 TATGGTCTTA
37314280 TACGGAAATC
Statistics
Matches: 89, Mismatches: 12, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
46 25 0.28
47 35 0.39
48 13 0.15
49 16 0.18
ACGTcount: A:0.32, C:0.25, G:0.14, T:0.30
Consensus pattern (46 bp):
TATGGTCTTACACGAATCACATATCACACTAATGCCATATCCCAGA
Found at i:37314336 original size:31 final size:31
Alignment explanation
Indices: 37314301--37314449 Score: 190
Period size: 31 Copynumber: 4.8 Consensus size: 31
37314291 CTTGTCACTT
*
37314301 GTAGCCGAAGCTACCACTATTCACTGATCAA
1 GTAGCCGAAGCTACCACTTTTCACTGATCAA
* * * * *
37314332 GTAGCTGGAGCTACCATTTTTAACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAA
* *
37314363 GTAGTCGGAGCTACCACTTTTCACTGATCAA
1 GTAGCCGAAGCTACCACTTTTCACTGATCAA
** *
37314394 GTAGCAAAAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAA
*
37314425 GTAGTCGAAGCTACCACTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACT
37314450 TGTCATTTGT
Statistics
Matches: 99, Mismatches: 19, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 99 1.00
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAA
Found at i:37314406 original size:62 final size:62
Alignment explanation
Indices: 37314301--37314449 Score: 226
Period size: 62 Copynumber: 2.4 Consensus size: 62
37314291 CTTGTCACTT
* * *** *
37314301 GTAGCCGAAGCTACCACTATTCACTGATCAAGTAGCTGGAGCTACCATTTTTAACTGATCAG
1 GTAGTCGAAGCTACCACTTTTCACTGATCAAGTAGCAAAAGCTACCACTTTTAACTGATCAG
* *
37314363 GTAGTCGGAGCTACCACTTTTCACTGATCAAGTAGCAAAAGCTACCACTTTTCACTGATCAG
1 GTAGTCGAAGCTACCACTTTTCACTGATCAAGTAGCAAAAGCTACCACTTTTAACTGATCAG
37314425 GTAGTCGAAGCTACCACTTTTCACT
1 GTAGTCGAAGCTACCACTTTTCACT
37314450 TGTCATTTGT
Statistics
Matches: 78, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
62 78 1.00
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (62 bp):
GTAGTCGAAGCTACCACTTTTCACTGATCAAGTAGCAAAAGCTACCACTTTTAACTGATCAG
Found at i:37319476 original size:45 final size:44
Alignment explanation
Indices: 37319403--37319564 Score: 222
Period size: 45 Copynumber: 3.6 Consensus size: 44
37319393 TATTCTACGG
37319403 TACTATTCGGGCCTTTTGAGCCTAGCAGGCTATGATGTCGGTGAGA
1 TACTATTCGGGCC-TTTGAGCCTAGCAGGCTATGATG-CGGTGAGA
*
37319449 TACTATTTGGGCCTTTGAGCCTAGCAGGCTATGATGCTGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATGATGC-GGTGAGA
* *
37319494 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATGATG-CGGTGAGA
*
37319539 TGA-TA-TCGGG-CTTCGAGCCTAGCAGG
1 T-ACTATTCGGGCCTTTGAGCCTAGCAGG
37319565 TGAAATGCCG
Statistics
Matches: 108, Mismatches: 5, Indels: 9
0.89 0.04 0.07
Matches are distributed among these distances:
43 15 0.14
44 6 0.06
45 73 0.68
46 14 0.13
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.28
Consensus pattern (44 bp):
TACTATTCGGGCCTTTGAGCCTAGCAGGCTATGATGCGGTGAGA
Found at i:37322278 original size:27 final size:27
Alignment explanation
Indices: 37322248--37322314 Score: 80
Period size: 27 Copynumber: 2.5 Consensus size: 27
37322238 GGGAGTGGAG
* * *
37322248 CCTATCTGGTTGGCGCCATTGGTAACC
1 CCTATCTGATAGGCGCCACTGGTAACC
* *
37322275 CCTATCTGATAGGCGTCACTGGTGACC
1 CCTATCTGATAGGCGCCACTGGTAACC
*
37322302 CTTATCTGATAGG
1 CCTATCTGATAGG
37322315 TAGCACCAAT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.18, C:0.27, G:0.25, T:0.30
Consensus pattern (27 bp):
CCTATCTGATAGGCGCCACTGGTAACC
Found at i:37322429 original size:22 final size:20
Alignment explanation
Indices: 37322404--37322452 Score: 53
Period size: 22 Copynumber: 2.3 Consensus size: 20
37322394 GAACGGAAGG
* *
37322404 AAGAAGATAGGGAGAAGAAAGA
1 AAGAAGA-AAGGAGAACAAA-A
37322426 AAGAACGAAAGGAGAACAAAA
1 AAGAA-GAAAGGAGAACAAAA
37322447 AAGAAG
1 AAGAAG
37322453 GATAATGTAC
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
20 1 0.04
21 6 0.25
22 15 0.62
23 2 0.08
ACGTcount: A:0.63, C:0.04, G:0.31, T:0.02
Consensus pattern (20 bp):
AAGAAGAAAGGAGAACAAAA
Found at i:37326068 original size:48 final size:48
Alignment explanation
Indices: 37325997--37326090 Score: 170
Period size: 48 Copynumber: 2.0 Consensus size: 48
37325987 TTGGACTTCG
*
37325997 CAAGCGTGCTAAAACCTTCTTCATAATTGGCTTTGGAACCCAATTTCA
1 CAAGCGTGCTAAAACCTTCTTCATAATTGACTTTGGAACCCAATTTCA
*
37326045 CAAGCGTGCTAAAACCTTCTTCATAATTGACTTTGGAACCTAATTT
1 CAAGCGTGCTAAAACCTTCTTCATAATTGACTTTGGAACCCAATTT
37326091 TTACTCTGAT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 44 1.00
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (48 bp):
CAAGCGTGCTAAAACCTTCTTCATAATTGACTTTGGAACCCAATTTCA
Found at i:37328378 original size:39 final size:39
Alignment explanation
Indices: 37328334--37328459 Score: 171
Period size: 39 Copynumber: 3.2 Consensus size: 39
37328324 TATGAGATTG
*
37328334 AAAATATCCGGACATGAGGTTCGCAGGCTATATGCTGGA
1 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
*
37328373 AAAATATCCGGACATGAGGTCCGAAGGCTATATGCTGGA
1 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
** * ** **
37328412 AAAATATTTGGACTTGAGGTCCGCAGGCTACGTGCTACA
1 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
37328451 AAAATATCC
1 AAAATATCC
37328460 TAGTTAAAGA
Statistics
Matches: 75, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
39 75 1.00
ACGTcount: A:0.33, C:0.19, G:0.25, T:0.23
Consensus pattern (39 bp):
AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
Found at i:37331304 original size:14 final size:14
Alignment explanation
Indices: 37331285--37331313 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
37331275 GTGGTTCACG
37331285 GGTATGTCAAAGAT
1 GGTATGTCAAAGAT
37331299 GGTATGTCAAAGAT
1 GGTATGTCAAAGAT
37331313 G
1 G
37331314 AGAATAATTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.34, C:0.07, G:0.31, T:0.28
Consensus pattern (14 bp):
GGTATGTCAAAGAT
Found at i:37341683 original size:46 final size:46
Alignment explanation
Indices: 37341616--37341744 Score: 206
Period size: 46 Copynumber: 2.8 Consensus size: 46
37341606 TGTAACCCGC
* *
37341616 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCAT
*
37341662 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
37341708 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
37341745 TGCTCAACCA
Statistics
Matches: 79, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
45 2 0.03
46 77 0.97
ACGTcount: A:0.30, C:0.29, G:0.21, T:0.19
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:37341763 original size:46 final size:45
Alignment explanation
Indices: 37341624--37341763 Score: 133
Period size: 46 Copynumber: 3.0 Consensus size: 45
37341614 GCCCATAAGC
* * * *
37341624 GAACTCGGACTCAACTCAACGAGCTCAGG-CGTTC-GCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTC-GGATGCTCACCATCC-T-AGT
*** *
37341670 GAACTCGGACTCAACTCAACGAGTTCGGACATTC-GCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCC-T-AGT
37341716 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTC-ACCATCCTAGT
37341762 GA
1 GA
37341764 CATGTCACTT
Statistics
Matches: 85, Mismatches: 6, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
45 2 0.02
46 77 0.91
47 1 0.01
48 5 0.06
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (45 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCCTAGT
Found at i:37347756 original size:43 final size:43
Alignment explanation
Indices: 37347583--37347749 Score: 280
Period size: 43 Copynumber: 3.8 Consensus size: 43
37347573 ATTACACCTA
* *
37347583 CTAGGCATGAAGGCTCGAATACACATCACCGGCACGAAGCCTG
1 CTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTG
37347626 CTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTG
1 CTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTG
* *
37347669 CTAGGCACGAAGGCCCGAATACATATCACTGGCACGAAGCCTG
1 CTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTG
37347712 CTAGGCTAGCGAAGGCCCGAATACACATCACCGGCACG
1 CTAGGC-A-CGAAGGCCCGAATACACATCACCGGCACG
37347750 CGCTGCTGCG
Statistics
Matches: 116, Mismatches: 6, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
43 88 0.76
44 1 0.01
45 27 0.23
ACGTcount: A:0.30, C:0.32, G:0.26, T:0.12
Consensus pattern (43 bp):
CTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTG
Found at i:37347813 original size:38 final size:38
Alignment explanation
Indices: 37347771--37347889 Score: 130
Period size: 38 Copynumber: 3.1 Consensus size: 38
37347761 ACGAGGCCGA
* * *
37347771 ATATAATACCAGCACTAGGCCTGCGGGATTTATCCCGG
1 ATATAATACCAGCACAAAGCCTGCGGGATTTAACCCGG
* * *
37347809 ATATAATACCAGCACAAAGCCTACGAGATTTAACCTGG
1 ATATAATACCAGCACAAAGCCTGCGGGATTTAACCCGG
** * *
37347847 ATATTTTACCAGCACGAAGCCTGCGGGTCTTTAAGCCCGG
1 ATATAATACCAGCACAAAGCCTGCGGG-ATTTAA-CCCGG
37347887 ATA
1 ATA
37347890 CACATCAAAT
Statistics
Matches: 66, Mismatches: 13, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
38 54 0.82
39 5 0.08
40 7 0.11
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.24
Consensus pattern (38 bp):
ATATAATACCAGCACAAAGCCTGCGGGATTTAACCCGG
Found at i:37354006 original size:15 final size:17
Alignment explanation
Indices: 37353976--37354007 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
37353966 TTGATACTTG
37353976 TGAATGTGAGTTTGGTA
1 TGAATGTGAGTTTGGTA
37353993 TGAAT-TGA-TTTGGTA
1 TGAATGTGAGTTTGGTA
37354008 AATTATGCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 3 0.20
17 5 0.33
ACGTcount: A:0.25, C:0.00, G:0.31, T:0.44
Consensus pattern (17 bp):
TGAATGTGAGTTTGGTA
Found at i:37370523 original size:56 final size:56
Alignment explanation
Indices: 37370451--37370674 Score: 256
Period size: 56 Copynumber: 4.0 Consensus size: 56
37370441 TCTTACACGT
***
37370451 AATCACATATCGATGCCACTGTCCCAGATA-G-GGTCTTACTCGCAGACATATATCGA
1 AATCACATATCGATGCCACTGTATTA-A-ACGTGGTCTTACTCGCAGACATATATCGA
* * ** *
37370507 AGTCACATATCGATGCCAAC-GTATTAAACGTAGTCTTACTCATAGACATATATTGA
1 AATCACATATCGATGCC-ACTGTATTAAACGTGGTCTTACTCGCAGACATATATCGA
* *
37370563 AATCACATATCGATGCCAATGTATTAAACGTGGTCTTACTCGCACACATATATCGA
1 AATCACATATCGATGCCACTGTATTAAACGTGGTCTTACTCGCAGACATATATCGA
* * * * * *
37370619 AATCACATATCGATGCCAATGTATTAAAGGTGGTATTACTCACACACAAATATCGA
1 AATCACATATCGATGCCACTGTATTAAACGTGGTCTTACTCGCAGACATATATCGA
37370675 TGCCATGGTC
Statistics
Matches: 145, Mismatches: 19, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
54 1 0.01
55 3 0.02
56 139 0.96
57 2 0.01
ACGTcount: A:0.35, C:0.22, G:0.15, T:0.28
Consensus pattern (56 bp):
AATCACATATCGATGCCACTGTATTAAACGTGGTCTTACTCGCAGACATATATCGA
Found at i:37377174 original size:56 final size:56
Alignment explanation
Indices: 37377114--37377249 Score: 191
Period size: 56 Copynumber: 2.4 Consensus size: 56
37377104 CCCAGATAGA
* *
37377114 GTCTTACTCGCACACATATATCGAAGTCACATATCGATGCCAATGCATTAAACGTG
1 GTCTTACTCGCACACATATATCGAAGTCACATATCGATGCCAACGCATTAAACATG
** * * * *
37377170 GTCTTACTCATACACATATATCGGATTCACATATCGATGCCAACGTATTAAATATG
1 GTCTTACTCGCACACATATATCGAAGTCACATATCGATGCCAACGCATTAAACATG
*
37377226 GTCTTTCTCGCACACATATATCGA
1 GTCTTACTCGCACACATATATCGA
37377250 TGCCATGATC
Statistics
Matches: 68, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
56 68 1.00
ACGTcount: A:0.32, C:0.24, G:0.14, T:0.30
Consensus pattern (56 bp):
GTCTTACTCGCACACATATATCGAAGTCACATATCGATGCCAACGCATTAAACATG
Found at i:37381712 original size:38 final size:38
Alignment explanation
Indices: 37381661--37381736 Score: 136
Period size: 38 Copynumber: 2.0 Consensus size: 38
37381651 ACTTACATGC
37381661 ACTTACCCAAGTTAGCT-CAATGCTTAAGCCCTAAAATG
1 ACTTACCCAAGTTAGCTGC-ATGCTTAAGCCCTAAAATG
37381699 ACTTACCCAAGTTAGCTGCATGCTTAAGCCCTAAAATG
1 ACTTACCCAAGTTAGCTGCATGCTTAAGCCCTAAAATG
37381737 GTGTCTTTTT
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
38 36 0.97
39 1 0.03
ACGTcount: A:0.33, C:0.26, G:0.14, T:0.26
Consensus pattern (38 bp):
ACTTACCCAAGTTAGCTGCATGCTTAAGCCCTAAAATG
Found at i:37383057 original size:31 final size:31
Alignment explanation
Indices: 37383009--37383094 Score: 138
Period size: 31 Copynumber: 2.8 Consensus size: 31
37382999 TCAATCTCAG
37383009 CATAT-ACTGGGCTGAAGCCTTTACATTATT
1 CATATCACTGGGCTGAAGCCTTTACATTATT
* * *
37383039 CATGTCACTGGGCCGAAGCCTTTTCATTATT
1 CATATCACTGGGCTGAAGCCTTTACATTATT
37383070 CATATCACTGGGCTGAAGCCTTTAC
1 CATATCACTGGGCTGAAGCCTTTAC
37383095 TGTAAACGAT
Statistics
Matches: 49, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
30 4 0.08
31 45 0.92
ACGTcount: A:0.23, C:0.24, G:0.19, T:0.34
Consensus pattern (31 bp):
CATATCACTGGGCTGAAGCCTTTACATTATT
Found at i:37383326 original size:24 final size:25
Alignment explanation
Indices: 37383299--37383381 Score: 91
Period size: 25 Copynumber: 3.4 Consensus size: 25
37383289 CTGGAGGCCT
*
37383299 AGCCTCTTTT-AAT-AACTGGGGCAA
1 AGCC-CTTTTCAATAAACTGAGGCAA
*
37383323 AGCCCTTTTCGATAAACTGAGGCAA
1 AGCCCTTTTCAATAAACTGAGGCAA
**
37383348 AGCCCTTTTCGGTAAACTG-GAGCAA
1 AGCCCTTTTCAATAAACTGAG-GCAA
37383373 AGCCCTTTT
1 AGCCCTTTT
37383382 GCACTTCCTC
Statistics
Matches: 53, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
23 5 0.09
24 7 0.13
25 41 0.77
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (25 bp):
AGCCCTTTTCAATAAACTGAGGCAA
Found at i:37383340 original size:25 final size:25
Alignment explanation
Indices: 37383312--37383381 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
37383302 CTCTTTTAAT
37383312 AACTGGGGCAAAGCCCTTTTCGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
* *
37383337 AACTGAGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
37383362 AACTGGAGCAAAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
37383382 GCACTTCCTC
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.29, C:0.24, G:0.23, T:0.24
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:37383454 original size:20 final size:20
Alignment explanation
Indices: 37383429--37383485 Score: 98
Period size: 20 Copynumber: 2.9 Consensus size: 20
37383419 TATATGAATT
37383429 TATCATGTGCATAT-ATTACA
1 TATCATGTGCATATCA-TACA
37383449 TATCATGTGCATATCATACA
1 TATCATGTGCATATCATACA
37383469 TATCATGTGCATATCAT
1 TATCATGTGCATATCAT
37383486 GTCAAATCAT
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
20 35 0.97
21 1 0.03
ACGTcount: A:0.33, C:0.18, G:0.11, T:0.39
Consensus pattern (20 bp):
TATCATGTGCATATCATACA
Found at i:37383463 original size:11 final size:11
Alignment explanation
Indices: 37383429--37383497 Score: 76
Period size: 11 Copynumber: 6.7 Consensus size: 11
37383419 TATATGAATT
37383429 TATCATGTGCA
1 TATCATGTGCA
*
37383440 TAT-AT-TACA
1 TATCATGTGCA
37383449 TATCATGTGCA
1 TATCATGTGCA
*
37383460 TATCA--TACA
1 TATCATGTGCA
37383469 TATCATGTGCA
1 TATCATGTGCA
37383480 TATCATGT-CA
1 TATCATGTGCA
*
37383490 AATCATGT
1 TATCATGT
37383498 ATATCAAAAT
Statistics
Matches: 49, Mismatches: 5, Indels: 9
0.78 0.08 0.14
Matches are distributed among these distances:
9 14 0.29
10 13 0.27
11 22 0.45
ACGTcount: A:0.33, C:0.17, G:0.12, T:0.38
Consensus pattern (11 bp):
TATCATGTGCA
Found at i:37385918 original size:47 final size:47
Alignment explanation
Indices: 37385868--37386316 Score: 673
Period size: 47 Copynumber: 9.6 Consensus size: 47
37385858 ATACATGAGC
* * * *
37385868 TAAGGCCGAATGGCAAATGTCATGAATGTGAACATGCATTTGTGTGC
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGA
** * *
37385915 TAAGGCCGAATGGAAAATGTGATGAATGTGAACATGCATTTGTGTGC
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGA
* *
37385962 TAAGGCCGAATGGCAAATGTGATGAATGTGAACATGCATTTGTGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGA
* *
37386009 TAAGACCGAATGGCCAATGTGATGAATGTGAACATGTATATGTGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGA
* *
37386056 TAAGGCCGAATGGCCAATGTGATGAATATGAACATGCATATATGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGA
* *
37386103 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATATGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGA
*
37386150 TAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGA
* * *
37386197 TAAGGCCGAATGGCCAATGTGAAGAATATGAACATGCATATATGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGA
* **
37386244 TAAGGCCGAATGGCCAATGTGATAAATGTGAACATGCATACATGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGA
* *
37386291 TAAGGCAGAATGGCCAAAGTGATGAA
1 TAAGGCCGAATGGCCAATGTGATGAA
37386317 CGTGGATGTG
Statistics
Matches: 374, Mismatches: 28, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 374 1.00
ACGTcount: A:0.34, C:0.12, G:0.28, T:0.26
Consensus pattern (47 bp):
TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGA
Found at i:37385944 original size:94 final size:94
Alignment explanation
Indices: 37385837--37386350 Score: 686
Period size: 94 Copynumber: 5.5 Consensus size: 94
37385827 TTAGGATTTT
* ** * * * * *
37385837 ATGTGATGGATGTGAATGTGTATACATGAGCTAAGGCCGAATGGCAAATGTCATGAATGTGAACA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
* * **
37385902 TGCATTTGTGTGCTAAGGCCGAATGGAAA
66 TGCATATGTGTGATAAGGCCGAATGGCCA
* * * * *
37385931 ATGTGATGAATGTGAACATGCATTTGTGTGCTAAGGCCGAATGGCAAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
* *
37385996 TGCATTTGTGTGATAAGACCGAATGGCCA
66 TGCATATGTGTGATAAGGCCGAATGGCCA
* *
37386025 ATGTGATGAATGTGAACATGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
*
37386090 TGCATATATGTGATAAGGCCGAATGGCCA
66 TGCATATGTGTGATAAGGCCGAATGGCCA
*
37386119 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
37386184 TGCATATGTGTGATAAGGCCGAATGGCCA
66 TGCATATGTGTGATAAGGCCGAATGGCCA
* * * *
37386213 ATGTGAAGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATAAATGTGAACA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
** *
37386278 TGCATACATGTGATAAGGCAGAATGGCCA
66 TGCATATGTGTGATAAGGCCGAATGGCCA
* * * ** ** *
37386307 AAGTGATGAACGTGGATGTGTATATATGTGGGAAAGCCGAATGG
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGG
37386351 TTAATGCGAA
Statistics
Matches: 376, Mismatches: 44, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
94 376 1.00
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.26
Consensus pattern (94 bp):
ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
TGCATATGTGTGATAAGGCCGAATGGCCA
Found at i:37385958 original size:23 final size:23
Alignment explanation
Indices: 37385932--37386005 Score: 55
Period size: 23 Copynumber: 3.2 Consensus size: 23
37385922 GAATGGAAAA
37385932 TGTGATGAATGTGAACATGCATT
1 TGTGATGAATGTGAACATGCATT
* * **
37385955 TGTG-TGCTAAGGCCG-A-ATGGCAAA
1 TGTGATG--AATG-TGAACAT-GCATT
37385979 TGTGATGAATGTGAACATGCATT
1 TGTGATGAATGTGAACATGCATT
37386002 TGTG
1 TGTG
37386006 TGATAAGACC
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 3 0.08
23 17 0.47
24 13 0.36
25 3 0.08
ACGTcount: A:0.28, C:0.11, G:0.30, T:0.31
Consensus pattern (23 bp):
TGTGATGAATGTGAACATGCATT
Found at i:37386125 original size:22 final size:22
Alignment explanation
Indices: 37386097--37386172 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
37386087 ACATGCATAT
37386097 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * ***
37386119 ATGTGATGAATG-TGAACATGTATA
1 ATGTGAT-AAGGCCG-A-ATGGCCA
37386143 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
37386166 ATGTGAT
1 ATGTGAT
37386173 GAATGTGAGC
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 15 0.38
23 8 0.21
24 8 0.21
25 8 0.21
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.26
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:37386383 original size:46 final size:46
Alignment explanation
Indices: 37386330--37386420 Score: 128
Period size: 46 Copynumber: 2.0 Consensus size: 46
37386320 GGATGTGTAT
* * *
37386330 ATATGTGGGAAAGCCGAATGGTTAATGCGAAATGTGTATGAGATGG
1 ATATGTGGGAAAGCCAAATGGCTAATGCGAAATATGTATGAGATGG
* * *
37386376 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGGAAAGCCAAATGGCTAATGCGAAATATGTATGAGATG
37386421 TGTATATATA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 39 1.00
ACGTcount: A:0.34, C:0.07, G:0.32, T:0.27
Consensus pattern (46 bp):
ATATGTGGGAAAGCCAAATGGCTAATGCGAAATATGTATGAGATGG
Found at i:37394940 original size:31 final size:31
Alignment explanation
Indices: 37394892--37394977 Score: 120
Period size: 31 Copynumber: 2.8 Consensus size: 31
37394882 TCAATCTTAG
* *
37394892 CATAT-ACTGGGCAGAAGCCTTTACATTATT
1 CATATCACTAGGCCGAAGCCTTTACATTATT
* *
37394922 CATGTCACTAGGCCGAAGCCTTTTCATTATT
1 CATATCACTAGGCCGAAGCCTTTACATTATT
*
37394953 CATATCACTGGGCCGAAGCCTTTAC
1 CATATCACTAGGCCGAAGCCTTTAC
37394978 TGTAAACGAT
Statistics
Matches: 48, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
30 4 0.08
31 44 0.92
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.31
Consensus pattern (31 bp):
CATATCACTAGGCCGAAGCCTTTACATTATT
Found at i:37395223 original size:25 final size:25
Alignment explanation
Indices: 37395195--37395289 Score: 172
Period size: 25 Copynumber: 3.8 Consensus size: 25
37395185 CTCTTTTAAT
*
37395195 AACTGGGGCAAAGCCCTTTTCGATA
1 AACTGGGGCAAAGCCCTTTTCGGTA
37395220 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
*
37395245 AACTGGGGCAAAACCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
37395270 AACTGGGGCAAAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
37395290 GCACTTCATC
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 67 1.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.24
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGGTA
Found at i:37395349 original size:11 final size:11
Alignment explanation
Indices: 37395333--37395381 Score: 59
Period size: 11 Copynumber: 4.7 Consensus size: 11
37395323 TATATGAATT
37395333 TATCATGTGCA
1 TATCATGTGCA
*
37395344 TATCA--TACA
1 TATCATGTGCA
37395353 TATCATGTGCA
1 TATCATGTGCA
37395364 TATCATGT-CA
1 TATCATGTGCA
*
37395374 AATCATGT
1 TATCATGT
37395382 ATATCAAAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
9 8 0.24
10 9 0.27
11 16 0.48
ACGTcount: A:0.33, C:0.18, G:0.12, T:0.37
Consensus pattern (11 bp):
TATCATGTGCA
Found at i:37415682 original size:30 final size:30
Alignment explanation
Indices: 37415648--37415705 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
37415638 CCGAGCCTAT
37415648 GGGAAAAAGTGTAAATATGAAAAAGTTTAG
1 GGGAAAAAGTGTAAATATGAAAAAGTTTAG
* * * *
37415678 GGGAAAAATTGTAATTTTGCAAAAGTTT
1 GGGAAAAAGTGTAAATATGAAAAAGTTT
37415706 GAGTTAAGGA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.45, C:0.02, G:0.24, T:0.29
Consensus pattern (30 bp):
GGGAAAAAGTGTAAATATGAAAAAGTTTAG
Found at i:37416520 original size:64 final size:64
Alignment explanation
Indices: 37416439--37416622 Score: 185
Period size: 67 Copynumber: 2.8 Consensus size: 64
37416429 AGACATTATG
* * *
37416439 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
37416503 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGACCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
37416568 AA
63 AA
* * * *
37416570 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCAAGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
37416623 CGAACTATAT
Statistics
Matches: 96, Mismatches: 19, Indels: 11
0.76 0.15 0.09
Matches are distributed among these distances:
62 1 0.01
63 17 0.18
64 25 0.26
66 21 0.22
67 32 0.33
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:37420113 original size:27 final size:27
Alignment explanation
Indices: 37420079--37420156 Score: 97
Period size: 27 Copynumber: 2.9 Consensus size: 27
37420069 AAATTTTCGA
37420079 AATACCCTTGTAGTGTAAAATGA-CTGT
1 AATACCCTTGTAGTGTAAAATGATC-GT
* *
37420106 AATGCCCTTGTAGTGAAAAATGATCGT
1 AATACCCTTGTAGTGTAAAATGATCGT
*
37420133 AATACCCCTGTA-TGGTAAAATGAT
1 AATACCCTTGTAGT-GTAAAATGAT
37420157 GATTATGCTT
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
26 1 0.02
27 42 0.95
28 1 0.02
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.31
Consensus pattern (27 bp):
AATACCCTTGTAGTGTAAAATGATCGT
Found at i:37420670 original size:15 final size:15
Alignment explanation
Indices: 37420650--37420678 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
37420640 CTTAAGCCTA
37420650 GACTGTTACTGTATG
1 GACTGTTACTGTATG
37420665 GACTGTTACTGTAT
1 GACTGTTACTGTAT
37420679 AGGGCTCTGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.21, C:0.14, G:0.24, T:0.41
Consensus pattern (15 bp):
GACTGTTACTGTATG
Found at i:37436942 original size:29 final size:29
Alignment explanation
Indices: 37436886--37436942 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
37436876 TACATAAAAA
* * *
37436886 ATATATAAAATATATAAAAGAATTAGTAT
1 ATATAGAAAATATATAAAAAAATGAGTAT
37436915 ATATAGAAAATATA-AAATAAAATGAGTA
1 ATATAGAAAATATATAAA-AAAATGAGTA
37436943 ATTGTTAATG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 3 0.12
29 21 0.88
ACGTcount: A:0.61, C:0.00, G:0.09, T:0.30
Consensus pattern (29 bp):
ATATAGAAAATATATAAAAAAATGAGTAT
Found at i:37437152 original size:20 final size:20
Alignment explanation
Indices: 37437129--37437170 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
37437119 AATAATTTAC
*
37437129 AAAATAAAT-ACATAATAAAT
1 AAAA-AAATCACATAAAAAAT
*
37437149 AAAAATATCACATAAAAAAT
1 AAAAAAATCACATAAAAAAT
37437169 AA
1 AA
37437171 TTAATAATGA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
19 3 0.16
20 16 0.84
ACGTcount: A:0.71, C:0.07, G:0.00, T:0.21
Consensus pattern (20 bp):
AAAAAAATCACATAAAAAAT
Done.