Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 114 of 362
Found at i:37437337 original size:17 final size:16
Alignment explanation
Indices: 37437296--37437362 Score: 55
Period size: 17 Copynumber: 4.1 Consensus size: 16
37437286 GATAATATAT
*
37437296 AAAT-ATATATATAAT
1 AAATAATATATATAAA
**
37437311 AAATGTTATATCATAAA
1 AAATAATATAT-ATAAA
* *
37437328 ATATAATATATGTAAGA
1 AAATAATATATATAA-A
37437345 AAATAATATATGATAAA
1 AAATAATATAT-ATAAA
37437362 A
1 A
37437363 GATTTTAAAT
Statistics
Matches: 40, Mismatches: 8, Indels: 6
0.74 0.15 0.11
Matches are distributed among these distances:
15 4 0.10
16 8 0.20
17 25 0.62
18 3 0.08
ACGTcount: A:0.58, C:0.01, G:0.06, T:0.34
Consensus pattern (16 bp):
AAATAATATATATAAA
Found at i:37437426 original size:21 final size:23
Alignment explanation
Indices: 37437390--37437441 Score: 74
Period size: 21 Copynumber: 2.3 Consensus size: 23
37437380 TGGTATTTTT
37437390 AATAATAATAAAT-AAATTATAAA
1 AATAATAATAAATAAAATT-TAAA
37437413 AATAA-AAT-AATAAAATTTAAA
1 AATAATAATAAATAAAATTTAAA
37437434 AATAATAA
1 AATAATAA
37437442 AGAAAAGGTT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
21 12 0.44
22 10 0.37
23 5 0.19
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (23 bp):
AATAATAATAAATAAAATTTAAA
Found at i:37439817 original size:206 final size:206
Alignment explanation
Indices: 37439150--37439935 Score: 1105
Period size: 206 Copynumber: 3.8 Consensus size: 206
37439140 CCACTTCTTT
* * * * *
37439150 GATTTGCTCTCTAACAATACAGAGATAACAAATCATCTTAGACTTGCTTTA-GGATAAACACGTG
1 GATTTGTTCTCTAACAATACAGAGATGACAAATCATCTTAGATTTGCTTCATCG-TAAACACGTG
* ** * *
37439214 AAAGCCAAATCAACTACATCTTCGATTTGTTCCTTGTAAGCACAAAGATGCCAAATCATCTTGGA
65 AAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATACCAAATCATCTTGGA
* * * * * * *
37439279 TCTTCCTTCAGTC-TAATCGTTTGAAGGTCAAATCTGCTATGTATCTGCTCTCTATTGAAGTAGA
130 TCTTGCTTCAG-CATAAACATCTGAAGGTCAGATCTGCTATGTATCTGCTCTCCATTGAAGTGGA
37439343 GATGCCAGACTTC
194 GATGCCAGACTTC
*
37439356 GATTTGTTCTCTAACAATACAGAGATGAAAAATCATCTTAGATTTGCTTCATCGTAAACACGTGA
1 GATTTGTTCTCTAACAATACAGAGATGACAAATCATCTTAGATTTGCTTCATCGTAAACACGTGA
* * * *
37439421 AAGCCAAATCAGCTATGTCTTTGATTTGTTCCTTGTAAGTACAAGGGTACCAAACCATCTTGGAT
66 AAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATACCAAATCATCTTGGAT
* * ** *
37439486 -TTGCTTCAGCATAAACATCCGAAGG-CGAGATCTGCTATGTATCTGCGCTCCATCAAAGTGAAG
131 CTTGCTTCAGCATAAACATCTGAAGGTC-AGATCTGCTATGTATCTGCTCTCCATTGAAGTGGAG
* *
37439549 ATGCTAGACTTT
195 ATGCCAGACTTC
* * * * *
37439561 GACTCGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACGTGA
1 GATTTGTTCTCTAACAATACAGAGATGACAAATCATCTTAGATTTGCTTCATCGTAAACACGTGA
* *
37439626 AAGCCAAATCAGCTGTGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCATCTTGGAT
66 AAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATACCAAATCATCTTGGAT
* * *
37439691 CTTGCTTCAGCATAATCGTCTGAAGGTCAGATCTGCTATATATCTGCTCTCCATTGAAGTGGAGA
131 CTTGCTTCAGCATAAACATCTGAAGGTCAGATCTGCTATGTATCTGCTCTCCATTGAAGTGGAGA
37439756 TGCCAGACTTC
196 TGCCAGACTTC
* *
37439767 GATTTGTTCTCTGACAATACAGAGATGACAAATCATTTTAGATTTGCTTCATCGTAAACACGTGA
1 GATTTGTTCTCTAACAATACAGAGATGACAAATCATCTTAGATTTGCTTCATCGTAAACACGTGA
* *
37439832 AAGCCAAATCAGCTATGTCTTCCATTTGTTCCTTGTAAGCACAAGGATACCAAATCATCCTGGAT
66 AAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATACCAAATCATCTTGGAT
* *
37439897 C-TGCTTCAGCATAAACATCTGAAGGTGAGATTTGCTATG
131 CTTGCTTCAGCATAAACATCTGAAGGTCAGATCTGCTATG
37439936 CTGCGACTTA
Statistics
Matches: 510, Mismatches: 65, Indels: 11
0.87 0.11 0.02
Matches are distributed among these distances:
204 2 0.00
205 208 0.41
206 298 0.58
207 2 0.00
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.31
Consensus pattern (206 bp):
GATTTGTTCTCTAACAATACAGAGATGACAAATCATCTTAGATTTGCTTCATCGTAAACACGTGA
AAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATACCAAATCATCTTGGAT
CTTGCTTCAGCATAAACATCTGAAGGTCAGATCTGCTATGTATCTGCTCTCCATTGAAGTGGAGA
TGCCAGACTTC
Found at i:37439935 original size:411 final size:411
Alignment explanation
Indices: 37439157--37439935 Score: 1247
Period size: 411 Copynumber: 1.9 Consensus size: 411
37439147 TTTGATTTGC
* *
37439157 TCTCTAACAATACAGAGATAACAAATCATCTTAGACTTGCTTTAGGATAAACACGTGAAAGCCAA
1 TCTCTAACAATACAGAGATAACAAATCATCTTAGACTTGCTTCACGATAAACACGTGAAAGCCAA
37439222 ATCAACTACATCTTCGATTTGTTCCTTGTAAGCACAAAGATGCCAAATCATCTTGGATCTTCCTT
66 ATCAACTACATCTTCGATTTGTTCCTTGTAAGCACAAAGATGCCAAATCATCTTGGATCTTCCTT
* * *
37439287 CAGTCTAATCGTTTGAAGGTCAAATCTGCTATGTATCTGCTCTCTATTGAAGTAGAGATGCCAGA
131 CAGTCTAATCGTCTGAAGGTCAAATCTGCTATATATCTGCTCTCCATTGAAGTAGAGATGCCAGA
37439352 CTTCGATTTGTTCTCTAACAATACAGAGATGAAAAATCATCTTAGATTTGCTTCATCGTAAACAC
196 CTTCGATTTGTTCTCTAACAATACAGAGATGAAAAATCATCTTAGATTTGCTTCATCGTAAACAC
** * * *
37439417 GTGAAAGCCAAATCAGCTATGTCTTTGATTTGTTCCTTGTAAGTACAAGGGTACCAAACCATCTT
261 GTGAAAGCCAAATCAGCTATGTCTTCCATTTGTTCCTTGTAAGCACAAGGATACCAAACCATCCT
*
37439482 GGATTTGCTTCAGCATAAACATCCGAAGGCGAGATCTGCTATGTATCTGCGCTCCATCAAAGTGA
326 GGATCTGCTTCAGCATAAACATCCGAAGGCGAGATCTGCTATGTATCTGCGCTCCATCAAAGTGA
37439547 AGATGCTAGACTTTGACTCGT
391 AGATGCTAGACTTTGACTCGT
* ** * *
37439568 TCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCG-TAAGCACGTGAAAGCCA
1 TCTCTAACAATACAGAGATAACAAATCATCTTAGACTTGCTTCA-CGATAAACACGTGAAAGCCA
* *** * *
37439632 AATCAGCTGTGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCATCTTGGATCTTGCT
65 AATCAACTACATCTTCGATTTGTTCCTTGTAAGCACAAAGATGCCAAATCATCTTGGATCTTCCT
* *
37439697 TCAG-CATAATCGTCTGAAGGTCAGATCTGCTATATATCTGCTCTCCATTGAAGTGGAGATGCCA
130 TCAGTC-TAATCGTCTGAAGGTCAAATCTGCTATATATCTGCTCTCCATTGAAGTAGAGATGCCA
* * *
37439761 GACTTCGATTTGTTCTCTGACAATACAGAGATGACAAATCATTTTAGATTTGCTTCATCGTAAAC
194 GACTTCGATTTGTTCTCTAACAATACAGAGATGAAAAATCATCTTAGATTTGCTTCATCGTAAAC
*
37439826 ACGTGAAAGCCAAATCAGCTATGTCTTCCATTTGTTCCTTGTAAGCACAAGGATACCAAATCATC
259 ACGTGAAAGCCAAATCAGCTATGTCTTCCATTTGTTCCTTGTAAGCACAAGGATACCAAACCATC
* * *
37439891 CTGGATCTGCTTCAGCATAAACATCTGAAGGTGAGATTTGCTATG
324 CTGGATCTGCTTCAGCATAAACATCCGAAGGCGAGATCTGCTATG
37439936 CTGCGACTTA
Statistics
Matches: 335, Mismatches: 31, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
410 1 0.00
411 333 0.99
412 1 0.00
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.31
Consensus pattern (411 bp):
TCTCTAACAATACAGAGATAACAAATCATCTTAGACTTGCTTCACGATAAACACGTGAAAGCCAA
ATCAACTACATCTTCGATTTGTTCCTTGTAAGCACAAAGATGCCAAATCATCTTGGATCTTCCTT
CAGTCTAATCGTCTGAAGGTCAAATCTGCTATATATCTGCTCTCCATTGAAGTAGAGATGCCAGA
CTTCGATTTGTTCTCTAACAATACAGAGATGAAAAATCATCTTAGATTTGCTTCATCGTAAACAC
GTGAAAGCCAAATCAGCTATGTCTTCCATTTGTTCCTTGTAAGCACAAGGATACCAAACCATCCT
GGATCTGCTTCAGCATAAACATCCGAAGGCGAGATCTGCTATGTATCTGCGCTCCATCAAAGTGA
AGATGCTAGACTTTGACTCGT
Found at i:37451593 original size:29 final size:29
Alignment explanation
Indices: 37451535--37451593 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 29
37451525 AATACATAAA
* * *
37451535 ATATATATAAAATATATAAAAGAATTAGT
1 ATATATAGAAAATATATAAAAAAATGAGT
37451564 ATATATAGAAAATATA-AAATAAAATGAGT
1 ATATATAGAAAATATATAAA-AAAATGAGT
37451593 A
1 A
37451594 ATTGTAATGA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
28 3 0.12
29 23 0.88
ACGTcount: A:0.61, C:0.00, G:0.08, T:0.31
Consensus pattern (29 bp):
ATATATAGAAAATATATAAAAAAATGAGT
Found at i:37451923 original size:28 final size:28
Alignment explanation
Indices: 37451886--37451983 Score: 85
Period size: 28 Copynumber: 3.4 Consensus size: 28
37451876 TTACAAATTT
37451886 TAAAATTATAAATAATATAATGAGTAATA
1 TAAAA-TATAAATAATATAATGAGTAATA
* *
37451915 TAAAATATATATAATATGAT-AGATAATA
1 TAAAATATAAATAATATAATGAG-TAATA
*
37451943 TATAAATATATATATAATA-AATG-TTATATAA
1 TA-AAATATA-A-ATAATATAATGAGTA-AT-A
37451974 TAAAATATAA
1 TAAAATATAA
37451984 TATATGTAGG
Statistics
Matches: 57, Mismatches: 5, Indels: 14
0.75 0.07 0.18
Matches are distributed among these distances:
27 2 0.04
28 20 0.35
29 15 0.26
30 11 0.19
31 9 0.16
ACGTcount: A:0.58, C:0.00, G:0.05, T:0.37
Consensus pattern (28 bp):
TAAAATATAAATAATATAATGAGTAATA
Found at i:37451945 original size:19 final size:19
Alignment explanation
Indices: 37451918--37451961 Score: 61
Period size: 19 Copynumber: 2.2 Consensus size: 19
37451908 AGTAATATAA
37451918 AATATATATAATATGATAGAT
1 AATATATA-AATAT-ATAGAT
*
37451939 AATATATAAATATATATAT
1 AATATATAAATATATAGAT
37451958 AATA
1 AATA
37451962 AATGTTATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 9 0.41
20 5 0.23
21 8 0.36
ACGTcount: A:0.57, C:0.00, G:0.05, T:0.39
Consensus pattern (19 bp):
AATATATAAATATATAGAT
Found at i:37451957 original size:14 final size:14
Alignment explanation
Indices: 37451912--37451987 Score: 54
Period size: 14 Copynumber: 5.5 Consensus size: 14
37451902 ATAATGAGTA
37451912 ATATA-AAATATAT
1 ATATATAAATATAT
* *
37451925 ATA-ATATGATAGAT
1 ATATATA-AATATAT
37451939 AATATATAAATATAT
1 -ATATATAAATATAT
*
37451954 ATATAATAAATGT-T
1 ATAT-ATAAATATAT
37451968 ATATAATAAA-ATAT
1 ATAT-ATAAATATAT
37451982 A-ATATA
1 ATATATA
37451988 TGTAGGAAAA
Statistics
Matches: 51, Mismatches: 6, Indels: 13
0.73 0.09 0.19
Matches are distributed among these distances:
12 4 0.08
13 7 0.14
14 22 0.43
15 15 0.29
16 3 0.06
ACGTcount: A:0.58, C:0.00, G:0.04, T:0.38
Consensus pattern (14 bp):
ATATATAAATATAT
Found at i:37452014 original size:17 final size:17
Alignment explanation
Indices: 37451946--37452015 Score: 56
Period size: 17 Copynumber: 4.2 Consensus size: 17
37451936 GATAATATAT
*
37451946 AAAT-ATATAT-ATAAT
1 AAATAATATATGATAAA
** *
37451961 AAATGTTATATAATAAA
1 AAATAATATATGATAAA
* *
37451978 ATATAATATATG-TAGGA
1 AAATAATATATGATA-AA
37451995 AAATAATATATGATAAA
1 AAATAATATATGATAAA
37452012 AAAT
1 AAAT
37452016 TTTAAATGTA
Statistics
Matches: 42, Mismatches: 9, Indels: 6
0.74 0.16 0.11
Matches are distributed among these distances:
15 4 0.10
16 7 0.17
17 29 0.69
18 2 0.05
ACGTcount: A:0.59, C:0.00, G:0.07, T:0.34
Consensus pattern (17 bp):
AAATAATATATGATAAA
Found at i:37452076 original size:21 final size:23
Alignment explanation
Indices: 37452040--37452091 Score: 74
Period size: 21 Copynumber: 2.3 Consensus size: 23
37452030 TGGTATTTTT
37452040 AATAATAATAAAT-AAATTATAAA
1 AATAATAATAAATAAAATT-TAAA
37452063 AATAA-AAT-AATAAAATTTAAA
1 AATAATAATAAATAAAATTTAAA
37452084 AATAATAA
1 AATAATAA
37452092 AGAAAGGGTT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
21 12 0.44
22 10 0.37
23 5 0.19
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (23 bp):
AATAATAATAAATAAAATTTAAA
Found at i:37454834 original size:6 final size:6
Alignment explanation
Indices: 37454823--37454874 Score: 70
Period size: 6 Copynumber: 8.8 Consensus size: 6
37454813 AGTTTATTTG
* * *
37454823 TTTTAT TTTTAT TTTTAT TTTTA- TTTTAT GTTTAT GTTTAT TGTTAT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT
37454870 TTTTA
1 TTTTA
37454875 CTTCTTTTTA
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
5 5 0.12
6 36 0.88
ACGTcount: A:0.17, C:0.00, G:0.06, T:0.77
Consensus pattern (6 bp):
TTTTAT
Found at i:37454856 original size:23 final size:23
Alignment explanation
Indices: 37454823--37454872 Score: 73
Period size: 23 Copynumber: 2.2 Consensus size: 23
37454813 AGTTTATTTG
* * *
37454823 TTTTATTTTTATTTTTATTTTTA
1 TTTTATGTTTATGTTTATTGTTA
37454846 TTTTATGTTTATGTTTATTGTTA
1 TTTTATGTTTATGTTTATTGTTA
37454869 TTTT
1 TTTT
37454873 TACTTCTTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.16, C:0.00, G:0.06, T:0.78
Consensus pattern (23 bp):
TTTTATGTTTATGTTTATTGTTA
Found at i:37464952 original size:40 final size:40
Alignment explanation
Indices: 37464869--37465088 Score: 250
Period size: 40 Copynumber: 5.5 Consensus size: 40
37464859 ACCCAAGTAT
** * *
37464869 CTTCGGGAT-TTAG-CCGGATATAACCACTCGCAC-AAGGC
1 CTTCGGG-TCTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
37464907 CTTCGGGTCTTATCCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
37464947 CTTCGGGACTTAGCCCGGATATAATCGCTAGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
*
37464987 CTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * * *
37465027 CTTCGGATCTTAGTCCGGATATAGTCACTAGCATAAAAGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
*
37465067 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGTCTTAGCCCGGATAT
37465089 CATTCGAATA
Statistics
Matches: 152, Mismatches: 25, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
37 1 0.01
38 10 0.07
39 16 0.11
40 124 0.82
41 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:37467968 original size:17 final size:17
Alignment explanation
Indices: 37467948--37467987 Score: 80
Period size: 17 Copynumber: 2.4 Consensus size: 17
37467938 TGGATATAAT
37467948 TACTTACCCTTACTAAA
1 TACTTACCCTTACTAAA
37467965 TACTTACCCTTACTAAA
1 TACTTACCCTTACTAAA
37467982 TACTTA
1 TACTTA
37467988 TCATGATATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.35, C:0.28, G:0.00, T:0.38
Consensus pattern (17 bp):
TACTTACCCTTACTAAA
Found at i:37468674 original size:21 final size:21
Alignment explanation
Indices: 37468630--37468674 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
37468620 TCATCAAGCC
* * **
37468630 ATCATCTTTACACTTTTACCT
1 ATCATCATTACACTTTAAAAT
37468651 ATCATCATTACACTTTAAAAT
1 ATCATCATTACACTTTAAAAT
37468672 ATC
1 ATC
37468675 TACTTGGCTA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.33, C:0.24, G:0.00, T:0.42
Consensus pattern (21 bp):
ATCATCATTACACTTTAAAAT
Found at i:37475689 original size:39 final size:40
Alignment explanation
Indices: 37475522--37475698 Score: 227
Period size: 40 Copynumber: 4.5 Consensus size: 40
37475512 AAGCCAAGTA
* * * *
37475522 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
37475561 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
37475601 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
37475641 CCTTCGGGACTTAGCCC-GA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
37475680 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
37475699 TTATCATCCA
Statistics
Matches: 124, Mismatches: 10, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
38 1 0.01
39 46 0.37
40 77 0.62
ACGTcount: A:0.24, C:0.29, G:0.24, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:37476977 original size:16 final size:18
Alignment explanation
Indices: 37476956--37476989 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
37476946 ACATGAGAAC
37476956 CTTTCT-TTTT-TTTTTT
1 CTTTCTCTTTTCTTTTTT
37476972 CTTTCTCTTTTCTTTTTT
1 CTTTCTCTTTTCTTTTTT
37476990 TCATCATCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.38
17 4 0.25
18 6 0.38
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (18 bp):
CTTTCTCTTTTCTTTTTT
Found at i:37483597 original size:40 final size:40
Alignment explanation
Indices: 37483535--37483752 Score: 298
Period size: 40 Copynumber: 5.5 Consensus size: 40
37483525 AAGCCAAGTA
* * * *
37483535 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
37483574 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
37483614 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCAAAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
37483654 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
37483694 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
37483734 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
37483753 TTATCATCCA
Statistics
Matches: 162, Mismatches: 14, Indels: 5
0.90 0.08 0.03
Matches are distributed among these distances:
39 13 0.08
40 149 0.92
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:37485027 original size:6 final size:6
Alignment explanation
Indices: 37485009--37485045 Score: 51
Period size: 6 Copynumber: 6.5 Consensus size: 6
37484999 CATGAGAGCC
*
37485009 TTTCTT TTT-TT TTTCTT TTTCTT TCTC-T TTTCTT TTT
1 TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TTT
37485046 TTCATCATCA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
5 9 0.33
6 18 0.67
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (6 bp):
TTTCTT
Found at i:37485031 original size:17 final size:17
Alignment explanation
Indices: 37485009--37485045 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
37484999 CATGAGAGCC
* *
37485009 TTTCTTTTTTTTTTCTT
1 TTTCTTTCTCTTTTCTT
37485026 TTTCTTTCTCTTTTCTT
1 TTTCTTTCTCTTTTCTT
37485043 TTT
1 TTT
37485046 TTCATCATCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (17 bp):
TTTCTTTCTCTTTTCTT
Found at i:37486634 original size:9 final size:9
Alignment explanation
Indices: 37486620--37486646 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
37486610 CATACTATAT
37486620 CCATTTCAA
1 CCATTTCAA
37486629 CCATTTCAA
1 CCATTTCAA
37486638 CCATTTCAA
1 CCATTTCAA
37486647 TGCTCAATTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.33, C:0.33, G:0.00, T:0.33
Consensus pattern (9 bp):
CCATTTCAA
Found at i:37491708 original size:67 final size:69
Alignment explanation
Indices: 37491575--37491716 Score: 207
Period size: 67 Copynumber: 2.1 Consensus size: 69
37491565 TCACCAGATA
* * *
37491575 CAGATATTGTGGCTAGGCCACCAGAACAGATATATGTATGTGGTGAAGCCACCAGATTGCAGCGA
1 CAGATATTGTGACGAAGCCACCAGAACAGA-ATA-GTATGTGGTGAAGCCACCAGATTGCAGCGA
37491640 GGCTGC
64 GGCTGC
* *
37491646 CAGATATTGTGACGAAGTCACCAGAACAG-ATA-TATGTGGTGAGGCCACCAGATTGCAGCGAGG
1 CAGATATTGTGACGAAGCCACCAGAACAGAATAGTATGTGGTGAAGCCACCAGATTGCAGCGAGG
37491709 CTGC
66 CTGC
37491713 CAGA
1 CAGA
37491717 ACGCTTCCTC
Statistics
Matches: 66, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
67 38 0.58
69 3 0.05
71 25 0.38
ACGTcount: A:0.30, C:0.21, G:0.30, T:0.20
Consensus pattern (69 bp):
CAGATATTGTGACGAAGCCACCAGAACAGAATAGTATGTGGTGAAGCCACCAGATTGCAGCGAGG
CTGC
Found at i:37494554 original size:40 final size:40
Alignment explanation
Indices: 37494461--37494718 Score: 346
Period size: 40 Copynumber: 6.5 Consensus size: 40
37494451 AAGCCAAGTA
* * *
37494461 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
37494499 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
37494539 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
37494579 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
37494619 CCTTCGGGACTTAGCCCGGATGTAATAACTCACACAAATA
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
37494659 CCTTCGAGACTTAGCCCGGA-ACTAGTCACTAGCGCA-AAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACT--CGCACAAATG
37494700 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
37494719 TTATCATCCA
Statistics
Matches: 197, Mismatches: 17, Indels: 9
0.88 0.08 0.04
Matches are distributed among these distances:
38 12 0.06
39 17 0.09
40 143 0.73
41 22 0.11
42 3 0.02
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:37502870 original size:40 final size:40
Alignment explanation
Indices: 37502777--37503031 Score: 346
Period size: 40 Copynumber: 6.5 Consensus size: 40
37502767 AAGCCAAGTA
* * *
37502777 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
37502815 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
37502855 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
37502895 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
37502935 CCTT--GGACTTAGCCCGGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
37502973 CCTTC-GGACTTAGCCCGGA-ACTAGTCACTAGCGCA-AAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACT--CGCACAAATG
37503013 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
37503032 TTATCATCCA
Statistics
Matches: 198, Mismatches: 11, Indels: 13
0.89 0.05 0.06
Matches are distributed among these distances:
38 48 0.24
39 37 0.19
40 96 0.48
41 17 0.09
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:37503012 original size:118 final size:118
Alignment explanation
Indices: 37502777--37503031 Score: 342
Period size: 118 Copynumber: 2.2 Consensus size: 118
37502767 AAGCCAAGTA
* * * *
37502777 CCTTCGGGATTTA-ACCGGATATAGCTACTCGCTCAATGCCTTCGGGACATAGCCCGGATATAGT
1 CCTTCGGGACTTAGCCCGGATATAGCTACTCGCACAATGCCTTC-GGACATAGCCCGGATATAAT
*
37502841 AACTCGCACCAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
65 AACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
37502895 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATGCCTT-GGACTTAGCCCGGATGTAA
1 CCTTCGGGACTTAGCCCGGATATAGCT-ACTCGCAC-AATGCCTTCGGACATAGCCCGGATATAA
*
37502958 TAACTCGCACAAATGCCTTC-GGACTTAGCCCGGA-ACTAGTCACTAGCGCA-AAATG
64 TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACT--CGCACAAATG
37503013 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
37503032 TTATCATCCA
Statistics
Matches: 123, Mismatches: 8, Indels: 12
0.86 0.06 0.08
Matches are distributed among these distances:
116 1 0.01
117 21 0.17
118 72 0.59
119 21 0.17
120 8 0.07
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.23
Consensus pattern (118 bp):
CCTTCGGGACTTAGCCCGGATATAGCTACTCGCACAATGCCTTCGGACATAGCCCGGATATAATA
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:37507831 original size:47 final size:47
Alignment explanation
Indices: 37507777--37508181 Score: 661
Period size: 47 Copynumber: 8.6 Consensus size: 47
37507767 TATTTGAATA
37507777 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
37507824 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
37507871 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
37507920 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCC-ATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
37507966 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
37508015 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
37508062 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * *
37508109 AATGTGAAAGTGTATATATGTGAT-AGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
37508155 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
37508182 TCCCGAAGGG
Statistics
Matches: 340, Mismatches: 12, Indels: 12
0.93 0.03 0.03
Matches are distributed among these distances:
46 62 0.18
47 188 0.55
48 25 0.07
49 65 0.19
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:37514861 original size:31 final size:32
Alignment explanation
Indices: 37514804--37514865 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 32
37514794 ACGAAGTCAC
* *
37514804 CAGATATAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATAGATATTGTGGCGAAGCCACCAGAA
*
37514836 CAGATATATATA-TGTGGCGAAGCCACCAGA
1 CAGATATAGATATTGTGGCGAAGCCACCAGA
37514866 TTGCAGCGAG
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 16 0.59
32 11 0.41
ACGTcount: A:0.35, C:0.19, G:0.24, T:0.21
Consensus pattern (32 bp):
CAGATATAGATATTGTGGCGAAGCCACCAGAA
Found at i:37515581 original size:26 final size:26
Alignment explanation
Indices: 37515524--37515576 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 26
37515514 AATCATCACA
* *
37515524 CAAATTAGTCATTTACGCACGAGGGG
1 CAAAATAGTCATTTACGCACCAGGGG
*
37515550 CAAAATAGTCATTTTACGCTCCAGGGG
1 CAAAATAGTCA-TTTACGCACCAGGGG
37515577 TAAATCGGTA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 10 0.43
27 13 0.57
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CAAAATAGTCATTTACGCACCAGGGG
Found at i:37518495 original size:28 final size:28
Alignment explanation
Indices: 37518463--37518543 Score: 81
Period size: 28 Copynumber: 2.9 Consensus size: 28
37518453 ATGCCATTGA
* *
37518463 ATACTCAATGCCTCACATACTAAGTGCC
1 ATACTCAATACCTCACACACTAAGTGCC
* * *
37518491 ATACTCGATATCTCGCACACTAAGTGCC
1 ATACTCAATACCTCACACACTAAGTGCC
* * * *
37518519 ACACTCGATATCTTACACACTAAGT
1 ATACTCAATACCTCACACACTAAGT
37518544 ACCGTACATA
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 45 1.00
ACGTcount: A:0.32, C:0.31, G:0.11, T:0.26
Consensus pattern (28 bp):
ATACTCAATACCTCACACACTAAGTGCC
Found at i:37518598 original size:40 final size:40
Alignment explanation
Indices: 37518534--37518627 Score: 116
Period size: 40 Copynumber: 2.4 Consensus size: 40
37518524 CGATATCTTA
* * *
37518534 CACACTAAGTACCGTACATAGCCGAAACTATCTCAAATTG
1 CACACTAAGTGCCATACATAGCCGAAACTATCTCAAATCG
* * * *
37518574 CACACTAAGTGCCATATATCGCCGAAGCTATGTCAAATCG
1 CACACTAAGTGCCATACATAGCCGAAACTATCTCAAATCG
*
37518614 CACACTAAATGCCA
1 CACACTAAGTGCCA
37518628 CAAATAGCTG
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 46 1.00
ACGTcount: A:0.36, C:0.29, G:0.14, T:0.21
Consensus pattern (40 bp):
CACACTAAGTGCCATACATAGCCGAAACTATCTCAAATCG
Found at i:37521309 original size:20 final size:20
Alignment explanation
Indices: 37521276--37521320 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
37521266 AGCACATGTA
*
37521276 TTCATAAAAATTTAGAAATT
1 TTCATAAAAATTTACAAATT
* * *
37521296 TTCATCAAATTTTACAACTT
1 TTCATAAAAATTTACAAATT
37521316 TTCAT
1 TTCAT
37521321 TTTAGTCCCT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.40, C:0.13, G:0.02, T:0.44
Consensus pattern (20 bp):
TTCATAAAAATTTACAAATT
Found at i:37543667 original size:19 final size:19
Alignment explanation
Indices: 37543643--37543679 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
37543633 ATTAATAAGC
*
37543643 CATTTCAAATAACCATATA
1 CATTTCAAACAACCATATA
*
37543662 CATTTCTAACAACCATAT
1 CATTTCAAACAACCATAT
37543680 CAAAAATACC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.43, C:0.24, G:0.00, T:0.32
Consensus pattern (19 bp):
CATTTCAAACAACCATATA
Found at i:37556051 original size:20 final size:18
Alignment explanation
Indices: 37556022--37556067 Score: 58
Period size: 20 Copynumber: 2.5 Consensus size: 18
37556012 GCTTATGGTG
*
37556022 TGATGGATGAAATGTATGAT
1 TGATGTATGAAA--TATGAT
37556042 TGATGTATGAAATATGAT
1 TGATGTATGAAATATGAT
37556060 TG-TGTATG
1 TGATGTATG
37556068 CAACATGTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
17 6 0.24
18 8 0.32
20 11 0.44
ACGTcount: A:0.33, C:0.00, G:0.28, T:0.39
Consensus pattern (18 bp):
TGATGTATGAAATATGAT
Found at i:37568255 original size:46 final size:46
Alignment explanation
Indices: 37568202--37568377 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
37568192 TGGTTGAGCA
37568202 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
37568248 TCTGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * *
37568293 CATCCGAACTCATTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
37568341 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
37568378 GTGGGTTACA
Statistics
Matches: 105, Mismatches: 16, Indels: 18
0.76 0.12 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 60 0.57
47 26 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:37568358 original size:93 final size:93
Alignment explanation
Indices: 37568199--37568370 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
37568189 GGATGGTTGA
* * * * *
37568199 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
37568264 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
37568292 GCATCCGAACTCATTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
37568357 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
37568371 CTTATGGGTG
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:37584700 original size:43 final size:43
Alignment explanation
Indices: 37584617--37584723 Score: 137
Period size: 43 Copynumber: 2.5 Consensus size: 43
37584607 TGTGATTACA
* *
37584617 TGTAAGACCATGTCTAGGACATTGGCATTGTATTGAGATTTCG
1 TGTAAGACCATGTCTGGGACATTGCCATTGTATTGAGATTTCG
*
37584660 TGTAAGACCATGTCTGGGACATTGCCATTGT-TCAT-CGATTTCG
1 TGTAAGACCATGTCTGGGACATTGCCATTGTAT--TGAGATTTCG
* *
37584703 TGTAAAACCCTGTCTGGGACA
1 TGTAAGACCATGTCTGGGACA
37584724 GTCGCATCGA
Statistics
Matches: 57, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
42 1 0.02
43 55 0.96
44 1 0.02
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.33
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACATTGCCATTGTATTGAGATTTCG
Found at i:37589645 original size:68 final size:64
Alignment explanation
Indices: 37589402--37589659 Score: 168
Period size: 68 Copynumber: 3.9 Consensus size: 64
37589392 ATATAGTTCG
* * * * * * *
37589402 GCTCTCTTGTAC-ACATGGTGAACAC-TCAGTACCACCCATGTGACCTAGCCA-ATTTATCTCGT
1 GCTCTCTTGT-CTACATGATGTACACAT-AGCACCACACATGTGACCTAGCTACATATATCCCGT
37589464 A
64 A
* * * * *
37589465 GCTCTCTTGTCTACATGGTGTCCTTCACCT-GAAACCACGCATGTGACCTAGCTACATATATCCC
1 GCTCTCTTGTCTACATGATG---TACACATAG-CACCACACATGTGACCTAGCTACATATATCCC
37589529 GTA
62 GTA
* * * * **
37589532 GCTCTCTTGTCTACATGATGTACACATAGTATCACCCATGCGACCTAGCTACATCATAATGTCTT
1 GCTCTCTTGTCTACATGATGTACACATAGCACCACACATGTGACCTAGCTACAT-AT-A--TCCC
37589597 GTA
62 GTA
* * *
37589600 GCTCTCTTGTAC-ACATGATGTGCAC-TCAGCACCATACATGTGACCTAGCTAAATACTATC
1 GCTCTCTTGT-CTACATGATGTACACAT-AGCACCACACATGTGACCTAGCTACATA-TATC
37589660 TGTATCATCC
Statistics
Matches: 157, Mismatches: 23, Indels: 28
0.75 0.11 0.13
Matches are distributed among these distances:
62 1 0.01
63 18 0.11
64 26 0.17
65 6 0.04
66 23 0.15
67 33 0.21
68 49 0.31
69 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.16, T:0.30
Consensus pattern (64 bp):
GCTCTCTTGTCTACATGATGTACACATAGCACCACACATGTGACCTAGCTACATATATCCCGTA
Found at i:37590354 original size:30 final size:30
Alignment explanation
Indices: 37590320--37590380 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
37590310 TCCTTAACTC
37590320 AAACTTTGGCAAAATTACAATTTTGCCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCCT
* * * *
37590350 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCCT
37590380 A
1 A
37590381 GGCTCAGGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGCAAAATTACAATTTTGCCCCT
Found at i:37597045 original size:47 final size:45
Alignment explanation
Indices: 37596976--37597092 Score: 139
Period size: 46 Copynumber: 2.5 Consensus size: 45
37596966 GAGTTCTGAA
* *
37596976 CTCGTTGAGTTAAGTCCGAGTTC-CTGA-GATGTAACTAGGCATCCGAG
1 CTCGTTGAGTTGAGTCCGAGTTCACTGAGGATGCAA--A--CATCCGAG
*
37597023 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACATCCGAG
1 CTCGTTGAGTTGAGTCCGAGTTCACTGA-GGATGCAAACATCCGAG
*
37597069 CTCGTTGAGTTGAGTCCAAGTTCA
1 CTCGTTGAGTTGAGTCCGAGTTCA
37597093 TTTATGGGCA
Statistics
Matches: 63, Mismatches: 4, Indels: 7
0.85 0.05 0.09
Matches are distributed among these distances:
46 31 0.49
47 22 0.35
48 4 0.06
50 6 0.10
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.29
Consensus pattern (45 bp):
CTCGTTGAGTTGAGTCCGAGTTCACTGAGGATGCAAACATCCGAG
Found at i:37598650 original size:21 final size:21
Alignment explanation
Indices: 37598609--37598651 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
37598599 TCTCCCACCT
* *
37598609 CCCCCGATTCCTCAACCTGTA
1 CCCCCGATGCCTCAACATGTA
*
37598630 CCCCCGATGCCTCAAGATGTA
1 CCCCCGATGCCTCAACATGTA
37598651 C
1 C
37598652 ATCTTTTAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.21, C:0.44, G:0.14, T:0.21
Consensus pattern (21 bp):
CCCCCGATGCCTCAACATGTA
Found at i:37600870 original size:18 final size:18
Alignment explanation
Indices: 37600847--37600883 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
37600837 ATATGCCAAG
37600847 TTTAGTAAAAGTGAATTT
1 TTTAGTAAAAGTGAATTT
37600865 TTTAGTAAAAGTGAATTT
1 TTTAGTAAAAGTGAATTT
37600883 T
1 T
37600884 GGCTTTAGGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.38, C:0.00, G:0.16, T:0.46
Consensus pattern (18 bp):
TTTAGTAAAAGTGAATTT
Found at i:37601460 original size:34 final size:35
Alignment explanation
Indices: 37601412--37601480 Score: 131
Period size: 34 Copynumber: 2.0 Consensus size: 35
37601402 AAACTTTTAG
37601412 AACTCATATCGATTGAGTTCTAACTCATATTTATC
1 AACTCATATCGATTGAGTTCTAACTCATATTTATC
37601447 AACT-ATATCGATTGAGTTCTAACTCATATTTATC
1 AACTCATATCGATTGAGTTCTAACTCATATTTATC
37601481 CACTTTTTCA
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
34 30 0.88
35 4 0.12
ACGTcount: A:0.32, C:0.19, G:0.09, T:0.41
Consensus pattern (35 bp):
AACTCATATCGATTGAGTTCTAACTCATATTTATC
Found at i:37607451 original size:40 final size:40
Alignment explanation
Indices: 37607384--37607560 Score: 304
Period size: 40 Copynumber: 4.5 Consensus size: 40
37607374 ACCCAAGTAT
*
37607384 CTTCGGGAT-TTAG-CCGGATATAACAACTCGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGCAACTCGCACAAATGC
* *
37607423 CTTCGGGTCCTAGCCCGGATACAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
37607463 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
37607503 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
37607543 CTTCGGGTCTTAGCCCGG
1 CTTCGGGTCTTAGCCCGG
37607561 TTATCATCCG
Statistics
Matches: 131, Mismatches: 5, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
38 1 0.01
39 10 0.08
40 120 0.92
ACGTcount: A:0.24, C:0.31, G:0.23, T:0.22
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
Found at i:37615635 original size:40 final size:40
Alignment explanation
Indices: 37615577--37615744 Score: 284
Period size: 40 Copynumber: 4.2 Consensus size: 40
37615567 TCTTCGAGAT
*
37615577 TTAG-CCGGATATAACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
* *
37615616 CTAGCCCGGATACAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
37615656 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
* *
37615696 TTAGCCCGGATATAGCAACTCGCAGAAATGCCTTTGGGTC
1 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
37615736 TTAGCCCGG
1 TTAGCCCGG
37615745 TTAGCATCCG
Statistics
Matches: 121, Mismatches: 7, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
39 3 0.02
40 118 0.98
ACGTcount: A:0.25, C:0.30, G:0.23, T:0.22
Consensus pattern (40 bp):
TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
Found at i:37621963 original size:42 final size:43
Alignment explanation
Indices: 37621861--37621988 Score: 136
Period size: 43 Copynumber: 3.0 Consensus size: 43
37621851 AGCTCGTACA
***
37621861 ATGCCAACATCCCAGAC-GTGGTCTTACATGTAATCAAATATCG
1 ATGCCAACATCCCAGACAG-GGTCTTACACAAAATCAAATATCG
** *
37621904 ATGCCATTATCCTAGACAGGGTCTTACACAAAATCAAATA-CG
1 ATGCCAACATCCCAGACAGGGTCTTACACAAAATCAAATATCG
* * *
37621946 ATGCCAACGTCCCAGACATGGTCTTACACGAAAA-CACATATCG
1 ATGCCAACATCCCAGACAGGGTCTTACAC-AAAATCAAATATCG
37621989 GATCCTATGT
Statistics
Matches: 70, Mismatches: 12, Indels: 6
0.80 0.14 0.07
Matches are distributed among these distances:
42 31 0.44
43 38 0.54
44 1 0.01
ACGTcount: A:0.35, C:0.27, G:0.16, T:0.23
Consensus pattern (43 bp):
ATGCCAACATCCCAGACAGGGTCTTACACAAAATCAAATATCG
Found at i:37628807 original size:55 final size:55
Alignment explanation
Indices: 37628747--37628859 Score: 140
Period size: 55 Copynumber: 2.1 Consensus size: 55
37628737 CCCGTGTTAA
* *
37628747 TTTAACAGGTTTGACC-ACGGGTAC-TAGACACGGGCGTGTCGCACGCCTGTGCTGT
1 TTTAACAGG-TTCACCTAC-GGTACTTACACACGGGCGTGTCGCACGCCTGTGCTGT
* * * *
37628802 TTTAACAGGTTCACCTACGGTTCTTCCATACGGGCGTGTCGCACGCCTGTGTTGT
1 TTTAACAGGTTCACCTACGGTACTTACACACGGGCGTGTCGCACGCCTGTGCTGT
37628857 TTT
1 TTT
37628860 GGCAAGTTCG
Statistics
Matches: 50, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
54 9 0.18
55 41 0.82
ACGTcount: A:0.16, C:0.26, G:0.27, T:0.31
Consensus pattern (55 bp):
TTTAACAGGTTCACCTACGGTACTTACACACGGGCGTGTCGCACGCCTGTGCTGT
Found at i:37633809 original size:37 final size:37
Alignment explanation
Indices: 37633768--37633840 Score: 137
Period size: 37 Copynumber: 2.0 Consensus size: 37
37633758 TGAGTTAGTG
37633768 ATTGATTATCATCCAGGAAAAGAAAATGTTGTTGCTC
1 ATTGATTATCATCCAGGAAAAGAAAATGTTGTTGCTC
*
37633805 ATTGATTATCATCCAGGAAAAGCAAATGTTGTTGCT
1 ATTGATTATCATCCAGGAAAAGAAAATGTTGTTGCT
37633841 GATGCATTAA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.34, C:0.14, G:0.19, T:0.33
Consensus pattern (37 bp):
ATTGATTATCATCCAGGAAAAGAAAATGTTGTTGCTC
Found at i:37639268 original size:43 final size:42
Alignment explanation
Indices: 37639124--37639290 Score: 158
Period size: 43 Copynumber: 3.9 Consensus size: 42
37639114 AGTTATCAAG
* *
37639124 ATGTGATTACATGTAAAACCATGTCTGGGACATTGGCATTGT
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGT
* ***
37639166 ATTGAGATTGTGTGTAAGACCATGTCTGGGACATTGGCATCGTT
1 A-TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCG-T
* * * * *
37639210 AAT-CGATTTCGTGTAAGACCCTGTCTGGGACAGTGGCATCGAT
1 -ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCG-T
* * *
37639253 ATGTGATAACATGTAAGACCATATCTGGGATA-TGGCAT
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCAT
37639291 TGTACGAGTT
Statistics
Matches: 102, Mismatches: 19, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
42 9 0.09
43 90 0.88
44 2 0.02
45 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.31
Consensus pattern (42 bp):
ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGT
Found at i:37642236 original size:42 final size:43
Alignment explanation
Indices: 37642167--37642292 Score: 130
Period size: 42 Copynumber: 2.9 Consensus size: 43
37642157 GTAATTACAT
* * * * *
37642167 ATCGATGCCATTGTCCCAAATAGGGTCTTACACGAACTCAT--
1 ATCGATGCCAATGTCCCAGACATGGTCTTACACGAAATCATGA
* *
37642208 ATACTATGCCAGTGTCCCAGACATGGTCTTACACGTAAATCATGA
1 AT-CGATGCCAATGTCCCAGACATGGTCTTACACG-AAATCATGA
** *
37642253 ATCGATGCCAACATCCCAGACGTGGTCTTACACGAAATCA
1 ATCGATGCCAATGTCCCAGACATGGTCTTACACGAAATCA
37642293 CATATCAGAA
Statistics
Matches: 70, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
41 2 0.03
42 27 0.39
43 12 0.17
44 27 0.39
45 2 0.03
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (43 bp):
ATCGATGCCAATGTCCCAGACATGGTCTTACACGAAATCATGA
Found at i:37643424 original size:13 final size:13
Alignment explanation
Indices: 37643406--37643430 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
37643396 ACAAACAATA
37643406 AAATTTTCACACG
1 AAATTTTCACACG
37643419 AAATTTTCACAC
1 AAATTTTCACAC
37643431 ATATCAATTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.04, T:0.32
Consensus pattern (13 bp):
AAATTTTCACACG
Found at i:37647588 original size:47 final size:47
Alignment explanation
Indices: 37647537--37647824 Score: 495
Period size: 47 Copynumber: 6.1 Consensus size: 47
37647527 CACTTCCGCG
** *
37647537 TTCATCACATTGGCCATTCTACCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
37647584 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
* *
37647631 TTCATCACATTGGCCATTCGGCCTTATCACATATTTGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
37647678 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
* * *
37647725 TACATCACATTGGCCATTCGGCCTTATCACATATTTGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
*
37647772 TTCATCACATTGGCCATTCGACCTTATCACACATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
37647819 TTCATC
1 TTCATC
37647825 TCATAGAATC
Statistics
Matches: 227, Mismatches: 14, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 227 1.00
ACGTcount: A:0.26, C:0.29, G:0.11, T:0.34
Consensus pattern (47 bp):
TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
Found at i:37647661 original size:22 final size:22
Alignment explanation
Indices: 37647587--37647708 Score: 65
Period size: 22 Copynumber: 5.3 Consensus size: 22
37647577 GTTCACATTC
37647587 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* *
37647609 ATCACACATAT-G-CATGTTC-ACATT
1 AT--CACAT-TGGCCA--TTCGGCCTT
37647633 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * *
37647656 ATCACATATTTG-CATGTTC-ACATT
1 ATCAC--ATTGGCCA--TTCGGCCTT
37647680 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
37647703 ATCACA
1 ATCACA
37647709 CATATGCATG
Statistics
Matches: 74, Mismatches: 10, Indels: 32
0.64 0.09 0.28
Matches are distributed among these distances:
22 20 0.27
23 20 0.27
24 20 0.27
25 14 0.19
ACGTcount: A:0.25, C:0.30, G:0.13, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:37653266 original size:17 final size:17
Alignment explanation
Indices: 37653244--37653294 Score: 66
Period size: 17 Copynumber: 2.9 Consensus size: 17
37653234 AATATAATAT
37653244 CATATCTTCTAAGATTA
1 CATATCTTCTAAGATTA
* *
37653261 CATATCTTATAAGATTC
1 CATATCTTCTAAGATTA
37653278 CATATCATATCTAAGAT
1 CATATC-T-TCTAAGAT
37653295 CTCTAAGATT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
17 21 0.72
18 1 0.03
19 7 0.24
ACGTcount: A:0.37, C:0.18, G:0.06, T:0.39
Consensus pattern (17 bp):
CATATCTTCTAAGATTA
Found at i:37656068 original size:18 final size:19
Alignment explanation
Indices: 37656026--37656068 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
37656016 GGAGAGGAGG
*
37656026 ATTGACAAGGAAGTGCAAC
1 ATTGAGAAGGAAGTGCAAC
* *
37656045 AGTGAGAAGGAGGTG-AAC
1 ATTGAGAAGGAAGTGCAAC
37656063 ATTGAG
1 ATTGAG
37656069 CAGCCAGTGC
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
18 8 0.40
19 12 0.60
ACGTcount: A:0.40, C:0.09, G:0.35, T:0.16
Consensus pattern (19 bp):
ATTGAGAAGGAAGTGCAAC
Found at i:37661908 original size:28 final size:27
Alignment explanation
Indices: 37661877--37661938 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 27
37661867 CTAGTTTTAC
37661877 TAAAAACCATATTTCACACTTAATAAAT
1 TAAAAACCATATTTCA-ACTTAATAAAT
** * **
37661905 TAAAATTCGTATTTCAACTTTTTAAAT
1 TAAAAACCATATTTCAACTTAATAAAT
37661932 TAAAAAC
1 TAAAAAC
37661939 AACCTAAATG
Statistics
Matches: 27, Mismatches: 7, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
27 14 0.52
28 13 0.48
ACGTcount: A:0.47, C:0.15, G:0.02, T:0.37
Consensus pattern (27 bp):
TAAAAACCATATTTCAACTTAATAAAT
Found at i:37662662 original size:84 final size:83
Alignment explanation
Indices: 37662521--37662681 Score: 218
Period size: 84 Copynumber: 1.9 Consensus size: 83
37662511 AGATAAAAAC
* *
37662521 ATTTGCAGTTACTACCACTTGTTGTGAGTACACAACATGGTTACAGATTAAGCAAACTGCCACTG
1 ATTTGCAGTTACTACCACTTGTTGTGAGTACACAACATGG-T-CAGATTAAACAAACTACCACTG
37662586 GG-TTTGTGGATAGTCACAT
64 GGTTTTGTGGATAGTCACAT
* * *
37662605 ATTTGCAGTTACTGCCACTTTTTGTGAGTGCACAATACAATGG-CAGATTAAACAAACTACCACT
1 ATTTGCAGTTACTACCACTTGTTGTGAGTACAC-A-AC-ATGGTCAGATTAAACAAACTACCACT
37662669 GGGTTTTGTGGAT
63 GGGTTTTGTGGAT
37662682 GAGCCACCAC
Statistics
Matches: 68, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
84 52 0.76
85 10 0.15
86 2 0.03
87 4 0.06
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.32
Consensus pattern (83 bp):
ATTTGCAGTTACTACCACTTGTTGTGAGTACACAACATGGTCAGATTAAACAAACTACCACTGGG
TTTTGTGGATAGTCACAT
Found at i:37666947 original size:25 final size:25
Alignment explanation
Indices: 37666918--37666965 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
37666908 TTATAACATG
* *
37666918 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCGTTATACCCCTAGGTA
37666943 AAAATGACCGTTATACCCCTAGG
1 AAAATGACCGTTATACCCCTAGG
37666966 GTTTATGTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (25 bp):
AAAATGACCGTTATACCCCTAGGTA
Found at i:37667049 original size:11 final size:11
Alignment explanation
Indices: 37667013--37667068 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
37667003 CATGGTATGT
37667013 ATGATATGCAC
1 ATGATATGCAC
* *
37667024 ATGACATG--T
1 ATGATATGCAC
37667033 ATGATATGCAC
1 ATGATATGCAC
*
37667044 ATGATATG--T
1 ATGATATGCAC
37667053 ATGATATGCAC
1 ATGATATGCAC
37667064 ATGAT
1 ATGAT
37667069 GTAATCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:37667068 original size:20 final size:20
Alignment explanation
Indices: 37667002--37667068 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
37666992 ATTTTGATAA
*
37667002 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
37667022 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
37667042 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
37667062 ACATGAT
1 ACATGAT
37667069 GTAATCATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:37667144 original size:24 final size:24
Alignment explanation
Indices: 37667117--37667235 Score: 172
Period size: 23 Copynumber: 5.0 Consensus size: 24
37667107 GGAGGAAGTG
37667117 TAAAAGGGCTTATGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
*
37667141 T-AAAGGGCTTATGCCTCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
37667164 T-AAAGGGCTTATGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
*
37667187 TAAAAGGGCTTTTGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
*
37667211 TAAAAGAGGC-TAGGCCTCCAGTTAT
1 TAAAAG-GGCTTATGCC-CCAGTTAT
37667236 ATGATAAAGC
Statistics
Matches: 87, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
23 44 0.51
24 32 0.37
25 11 0.13
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30
Consensus pattern (24 bp):
TAAAAGGGCTTATGCCCCAGTTAT
Found at i:37667186 original size:46 final size:47
Alignment explanation
Indices: 37667119--37667214 Score: 167
Period size: 47 Copynumber: 2.1 Consensus size: 47
37667109 AGGAAGTGTA
*
37667119 AAAGGGCTTATGCCCCAGTTATT-AAAGGGCTTATGCCTCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATT
*
37667165 AAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTTTGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATT
37667212 AAA
1 AAA
37667215 AGAGGCTAGG
Statistics
Matches: 47, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
46 23 0.49
47 24 0.51
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.31
Consensus pattern (47 bp):
AAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATT
Found at i:37667464 original size:31 final size:31
Alignment explanation
Indices: 37667429--37667492 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
37667419 TGTTTACAGT
37667429 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
* **
37667460 AAAGGCTTCGGCCTAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
37667491 AA
1 AA
37667493 TATGAAAAAG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.38, C:0.14, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:37675041 original size:25 final size:25
Alignment explanation
Indices: 37675011--37675058 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
37675001 TTATAACATG
* *
37675011 AAAATGACCGTTTTACCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
37675036 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
37675059 GTTTATGTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:37675161 original size:20 final size:20
Alignment explanation
Indices: 37675095--37675161 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
37675085 ATTTTGATAA
*
37675095 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
* *
37675115 ACATGACATGTATAATATGC
1 ACATGATATGTATGATATGC
37675135 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
37675155 ACATGAT
1 ACATGAT
37675162 GTAATCATAA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:37675242 original size:23 final size:23
Alignment explanation
Indices: 37675216--37675351 Score: 202
Period size: 23 Copynumber: 5.8 Consensus size: 23
37675206 AGTGTAAAAT
37675216 GGCTTATGCCCCAGTTATTAAAG
1 GGCTTATGCCCCAGTTATTAAAG
*
37675239 GGCTTATGCCCCAATTATTAAAG
1 GGCTTATGCCCCAGTTATTAAAG
*
37675262 GGCTTATGCCCTAGTTATTAAAG
1 GGCTTATGCCCCAGTTATTAAAG
37675285 GGCTTATGCCCCAGTTATTAAAAG
1 GGCTTATGCCCCAGTTATT-AAAG
*
37675309 GGCTTTTGCCCCAGTTATTAAAAG
1 GGCTTATGCCCCAGTTATT-AAAG
37675333 AGGC-TATGCCTCCAGTTAT
1 -GGCTTATGCC-CCAGTTAT
37675352 ATGATAAAGC
Statistics
Matches: 104, Mismatches: 6, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
23 61 0.59
24 32 0.31
25 11 0.11
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (23 bp):
GGCTTATGCCCCAGTTATTAAAG
Found at i:37675583 original size:31 final size:31
Alignment explanation
Indices: 37675545--37675608 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
37675535 CGTTTACAGT
37675545 AAAGGCTTCAGCCCAGTAATATGAAATATGA
1 AAAGGCTTCAGCCCAGTAATATGAAATATGA
* **
37675576 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCAGCCCAGTAATATGAAATATGA
37675607 AA
1 AA
37675609 TATGAACAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCAGCCCAGTAATATGAAATATGA
Found at i:37695367 original size:39 final size:39
Alignment explanation
Indices: 37695308--37695523 Score: 333
Period size: 39 Copynumber: 5.5 Consensus size: 39
37695298 ACAAAGCATG
*
37695308 CGGGACTTTAAGCCCGGATATAATACCAGCACGAATGCCTT
1 CGGGAC-TT-AGCCCGGATATAACACCAGCACGAATGCCTT
* *
37695349 TGGGACTTAGCCCAGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
*
37695388 CGGGACTTAGCCCGGATATAGCACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
* *
37695427 CAGGACTTAGCCCGGATATAATACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
* * *
37695466 CAGGACTTGGCCCGGATATAACACCAGCACAAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
37695505 CGGGACTTAGCCCGGATAT
1 CGGGACTTAGCCCGGATAT
37695524 TTTTCCAGCA
Statistics
Matches: 161, Mismatches: 14, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
39 154 0.96
40 2 0.01
41 5 0.03
ACGTcount: A:0.29, C:0.29, G:0.23, T:0.20
Consensus pattern (39 bp):
CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
Found at i:37695559 original size:39 final size:39
Alignment explanation
Indices: 37695516--37695647 Score: 203
Period size: 39 Copynumber: 3.4 Consensus size: 39
37695506 GGGACTTAGC
* * *
37695516 CCGGATATTTTTCCAGCACT-TAGCCTGCGGACTTTAAGT
1 CCGGATATATTTCCAGCA-TAAAGCCTGCGGACTTCAAGT
37695555 CCGGATATATTTCCAGCATAAAGCCTGCGGACTTCAAGT
1 CCGGATATATTTCCAGCATAAAGCCTGCGGACTTCAAGT
*
37695594 CCGGATATATTTCCAGCATAAAGCCTGCGAACTTCAAGT
1 CCGGATATATTTCCAGCATAAAGCCTGCGGACTTCAAGT
*
37695633 CCGGATATTTTTCCA
1 CCGGATATATTTCCA
37695648 ATACCATGCA
Statistics
Matches: 87, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
38 1 0.01
39 86 0.99
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.30
Consensus pattern (39 bp):
CCGGATATATTTCCAGCATAAAGCCTGCGGACTTCAAGT
Found at i:37695559 original size:78 final size:80
Alignment explanation
Indices: 37695310--37695563 Score: 304
Period size: 78 Copynumber: 3.2 Consensus size: 80
37695300 AAAGCATGCG
* * * * *
37695310 GGACTTTAAGCCCGGATATAATACCAGCACGAATGCCTTTGGGACTTAGCCCAGATATAACACCA
1 GGACTTTAAGCCCGGATATAACACCAGCACAAATGCCTTCGGGACTTAGCCCGGATATAATACCA
* *
37695375 GCACGAATGCCTTCG
66 GCACGAATGCCTGCA
* * *
37695390 GGAC-TT-AGCCCGGATATAGCACCAGCACGAATGCCTTCAGGACTTAGCCCGGATATAATACCA
1 GGACTTTAAGCCCGGATATAACACCAGCACAAATGCCTTCGGGACTTAGCCCGGATATAATACCA
*
37695453 GCACGAATGCCTTCA
66 GCACGAATGCCTGCA
* ** *
37695468 GGAC-TT-GGCCCGGATATAACACCAGCACAAATGCCTTCGGGACTTAGCCCGGATATTTTTCCA
1 GGACTTTAAGCCCGGATATAACACCAGCACAAATGCCTTCGGGACTTAGCCCGGATATAATACCA
**
37695531 GCACTTA-GCCTGC-
66 GCACGAATGCCTGCA
*
37695544 GGACTTTAAGTCCGGATATA
1 GGACTTTAAGCCCGGATATA
37695564 TTTCCAGCAT
Statistics
Matches: 153, Mismatches: 19, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
76 4 0.03
77 7 0.05
78 136 0.89
79 2 0.01
80 4 0.03
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (80 bp):
GGACTTTAAGCCCGGATATAACACCAGCACAAATGCCTTCGGGACTTAGCCCGGATATAATACCA
GCACGAATGCCTGCA
Found at i:37695559 original size:117 final size:119
Alignment explanation
Indices: 37695310--37695572 Score: 363
Period size: 117 Copynumber: 2.2 Consensus size: 119
37695300 AAAGCATGCG
**
37695310 GGACTTTAAGCCCGGATATAATACCAGCACGAATGCCTTTGGGACTTAGCCCAGATATAACACCA
1 GGACTTTAAGCCCGGATATAATACCAGCACGAATGCCTTCAGGACTTAGCCCAGATATAACACCA
* *
37695375 GCACGAATGCCTTCGGGACTTAGCCCGGATATAGCACCAGCACGAATGCCTTCA
66 GCACAAATGCCTTCGGGACTTAGCCCGGATATAGCACCAGCACGAATGCCTGCA
* *
37695429 GGAC-TT-AGCCCGGATATAATACCAGCACGAATGCCTTCAGGACTTGGCCCGGATATAACACCA
1 GGACTTTAAGCCCGGATATAATACCAGCACGAATGCCTTCAGGACTTAGCCCAGATATAACACCA
**** **
37695492 GCACAAATGCCTTCGGGACTTAGCCCGGATATTTTTCCAGCACTTA-GCCTGC-
66 GCACAAATGCCTTCGGGACTTAGCCCGGATATAGCACCAGCACGAATGCCTGCA
* * *
37695544 GGACTTTAAGTCCGGATATATTTCCAGCA
1 GGACTTTAAGCCCGGATATAATACCAGCA
37695573 TAAAGCCTGC
Statistics
Matches: 127, Mismatches: 15, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
115 4 0.03
116 7 0.06
117 110 0.87
118 2 0.02
119 4 0.03
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (119 bp):
GGACTTTAAGCCCGGATATAATACCAGCACGAATGCCTTCAGGACTTAGCCCAGATATAACACCA
GCACAAATGCCTTCGGGACTTAGCCCGGATATAGCACCAGCACGAATGCCTGCA
Found at i:37695571 original size:78 final size:80
Alignment explanation
Indices: 37695310--37695611 Score: 296
Period size: 78 Copynumber: 3.9 Consensus size: 80
37695300 AAAGCATGCG
* * * *
37695310 GGACTTTAAGCCCGGATATAATACCAGCACGAATGCCTTTGGGACTTAGCCCAGATATAACACCA
1 GGACTTTAAGCCCGGATATAATACCAGCACAAATGCCTTCGGGACTTAGCCCGGATATAATACCA
* *
37695375 GCACGAATGCCTTCG
66 GCACGAATGCCTGCA
** * *
37695390 GGAC-TT-AGCCCGGATATAGCACCAGCACGAATGCCTTCAGGACTTAGCCCGGATATAATACCA
1 GGACTTTAAGCCCGGATATAATACCAGCACAAATGCCTTCGGGACTTAGCCCGGATATAATACCA
*
37695453 GCACGAATGCCTTCA
66 GCACGAATGCCTGCA
* * ** *
37695468 GGAC-TT-GGCCCGGATATAACACCAGCACAAATGCCTTCGGGACTTAGCCCGGATATTTTTCCA
1 GGACTTTAAGCCCGGATATAATACCAGCACAAATGCCTTCGGGACTTAGCCCGGATATAATACCA
**
37695531 GCACTTA-GCCTGC-
66 GCACGAATGCCTGCA
* * * * * * * *
37695544 GGACTTTAAGTCCGGATATATTTCCAGCATAAA-GCCTGC-GGACTTCAAGTCCGGATATATTTC
1 GGACTTTAAGCCCGGATATAATACCAGCACAAATGCCTTCGGGACTT--AGCCCGGATATAATAC
37695607 CAGCA
64 CAGCA
37695612 TAAAGCCTGC
Statistics
Matches: 192, Mismatches: 26, Indels: 10
0.84 0.11 0.04
Matches are distributed among these distances:
76 10 0.05
77 12 0.06
78 164 0.85
79 2 0.01
80 4 0.02
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.23
Consensus pattern (80 bp):
GGACTTTAAGCCCGGATATAATACCAGCACAAATGCCTTCGGGACTTAGCCCGGATATAATACCA
GCACGAATGCCTGCA
Found at i:37703659 original size:34 final size:34
Alignment explanation
Indices: 37703617--37703685 Score: 120
Period size: 34 Copynumber: 2.0 Consensus size: 34
37703607 TAATCCCACC
*
37703617 ATAAAATGTGAGGTTCCCGGGAGTGCGTATAGGG
1 ATAAAATGTGAGGTTCCCGGGAGTGCATATAGGG
*
37703651 ATAAAATGTGAGGTTCGCGGGAGTGCATATAGGG
1 ATAAAATGTGAGGTTCCCGGGAGTGCATATAGGG
37703685 A
1 A
37703686 ATGATCATTC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.29, C:0.10, G:0.38, T:0.23
Consensus pattern (34 bp):
ATAAAATGTGAGGTTCCCGGGAGTGCATATAGGG
Found at i:37705126 original size:48 final size:48
Alignment explanation
Indices: 37705055--37705295 Score: 358
Period size: 48 Copynumber: 5.0 Consensus size: 48
37705045 GAGGTGTTAC
* *
37705055 ATGCCATGTACCAGACATGGTCTTACACTGGCTCATGTAACAATGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACGTAACAATGCCG
* *
37705103 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACGATGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACGTAACAATGCCG
* *
37705151 ATGCCATGTTCCAGACATGGTCTTACACTGGCTCACGTAACAATGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACGTAACAATGCCG
* * * *
37705199 ATGCCATGTCCCAAACATGG-CTTTACACTGGCTCACATAACGATGTCG
1 ATGCCATGTCCCAGACATGGTC-TTACACTGGCTCACGTAACAATGCCG
* *
37705247 ATGCCATGTCTCAGACATGGTCTTACACTTGCTCACGTAACAATGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACGTAACAATGCCG
37705295 A
1 A
37705296 ATGGTCTTAC
Statistics
Matches: 173, Mismatches: 18, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
47 1 0.01
48 171 0.99
49 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.25
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACGTAACAATGCCG
Found at i:37705225 original size:96 final size:96
Alignment explanation
Indices: 37705055--37705295 Score: 396
Period size: 96 Copynumber: 2.5 Consensus size: 96
37705045 GAGGTGTTAC
* * *
37705055 ATGCCATGTACCAGACATGGTCTTACACTGGCTCATGTAACAATGCCGATGCCATGTCCCAGACA
1 ATGCCATGTTCCAGACATGGTCTTACACTGGCTCACGTAACAATGCCGATGCCATGTCCCAAACA
37705120 TGGTCTTACACTGGCTCACATAACGATGCCG
66 TGGTCTTACACTGGCTCACATAACGATGCCG
*
37705151 ATGCCATGTTCCAGACATGGTCTTACACTGGCTCACGTAACAATGTCGATGCCATGTCCCAAACA
1 ATGCCATGTTCCAGACATGGTCTTACACTGGCTCACGTAACAATGCCGATGCCATGTCCCAAACA
*
37705216 TGG-CTTTACACTGGCTCACATAACGATGTCG
66 TGGTC-TTACACTGGCTCACATAACGATGCCG
*
37705247 ATGCCATG-TCTCAGACATGGTCTTACACTTGCTCACGTAACAATGCCGA
1 ATGCCATGTTC-CAGACATGGTCTTACACTGGCTCACGTAACAATGCCGA
37705296 ATGGTCTTAC
Statistics
Matches: 136, Mismatches: 7, Indels: 4
0.93 0.05 0.03
Matches are distributed among these distances:
95 3 0.02
96 133 0.98
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.25
Consensus pattern (96 bp):
ATGCCATGTTCCAGACATGGTCTTACACTGGCTCACGTAACAATGCCGATGCCATGTCCCAAACA
TGGTCTTACACTGGCTCACATAACGATGCCG
Found at i:37705305 original size:33 final size:33
Alignment explanation
Indices: 37705263--37705328 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
37705253 TGTCTCAGAC
* *
37705263 ATGGTCTTACACTTGCTCACGTAACAATGCCGA
1 ATGGTCTTACACTGGCTCACATAACAATGCCGA
*
37705296 ATGGTCTTACACTGGCTCACATAACGATGCCGA
1 ATGGTCTTACACTGGCTCACATAACAATGCCGA
37705329 TGCCATATCC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (33 bp):
ATGGTCTTACACTGGCTCACATAACAATGCCGA
Found at i:37708740 original size:37 final size:37
Alignment explanation
Indices: 37708687--37708784 Score: 106
Period size: 37 Copynumber: 2.6 Consensus size: 37
37708677 TTACTTGATT
* *
37708687 CCATAATCCAACTATGGTCTTACACAAAATCACAATG
1 CCATAACCCAGCTATGGTCTTACACAAAATCACAATG
* * **** * *
37708724 CCATAGCCCAGTTATGGTCTTACATGTCATTACGATG
1 CCATAACCCAGCTATGGTCTTACACAAAATCACAATG
37708761 CCATAACCCAGCTATGGTCTTACA
1 CCATAACCCAGCTATGGTCTTACA
37708785 TTCCATACTT
Statistics
Matches: 49, Mismatches: 12, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
37 49 1.00
ACGTcount: A:0.32, C:0.28, G:0.13, T:0.28
Consensus pattern (37 bp):
CCATAACCCAGCTATGGTCTTACACAAAATCACAATG
Found at i:37710479 original size:45 final size:45
Alignment explanation
Indices: 37710415--37710504 Score: 180
Period size: 45 Copynumber: 2.0 Consensus size: 45
37710405 GAAGAGAGAG
37710415 TAAGCATATAGCTTAGTAAGTAGGTATGTAAATAATAAACAATTT
1 TAAGCATATAGCTTAGTAAGTAGGTATGTAAATAATAAACAATTT
37710460 TAAGCATATAGCTTAGTAAGTAGGTATGTAAATAATAAACAATTT
1 TAAGCATATAGCTTAGTAAGTAGGTATGTAAATAATAAACAATTT
37710505 ATTAACATGT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.44, C:0.07, G:0.16, T:0.33
Consensus pattern (45 bp):
TAAGCATATAGCTTAGTAAGTAGGTATGTAAATAATAAACAATTT
Found at i:37711395 original size:8 final size:8
Alignment explanation
Indices: 37711382--37711407 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
37711372 TACATTTCAT
37711382 AAGCATCA
1 AAGCATCA
37711390 AAGCATCA
1 AAGCATCA
37711398 AAGCATCA
1 AAGCATCA
37711406 AA
1 AA
37711408 TATTAATATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.54, C:0.23, G:0.12, T:0.12
Consensus pattern (8 bp):
AAGCATCA
Found at i:37712667 original size:94 final size:93
Alignment explanation
Indices: 37712505--37712685 Score: 229
Period size: 94 Copynumber: 1.9 Consensus size: 93
37712495 GTTACAAGAA
* * * *
37712505 GTGAGCTATGAGAGTATTTTCTAGTCAATATGGGATTAAAATTAACTTTTTAATGAAAATAGCAA
1 GTGAGATATGAGAGTATTCTCTAGTAAATATGGAATTAAAATTAACTTTTTAATGAAAATAGCAA
* *
37712570 AGAAATTGTCACTTATTTATAAGGTAAAT
66 AGAAACTGACACTTA-TTATAAGGTAAAT
* * * **
37712599 GTGAGATATGAGATTGTTCTCTAGTAAATGTGGAATTAAAATTAA-TCTTTTAATGAAAATAGTG
1 GTGAGATATGAGAGTATTCTCTAGTAAATATGGAATTAAAATTAACT-TTTTAATGAAAATAGCA
*
37712663 AAGAAACTGAGACTTATTATAAG
65 AAGAAACTGACACTTATTATAAG
37712686 CATGAGAGTG
Statistics
Matches: 74, Mismatches: 12, Indels: 3
0.83 0.13 0.03
Matches are distributed among these distances:
93 8 0.11
94 66 0.89
ACGTcount: A:0.40, C:0.07, G:0.18, T:0.35
Consensus pattern (93 bp):
GTGAGATATGAGAGTATTCTCTAGTAAATATGGAATTAAAATTAACTTTTTAATGAAAATAGCAA
AGAAACTGACACTTATTATAAGGTAAAT
Found at i:37712835 original size:69 final size:69
Alignment explanation
Indices: 37712734--37712906 Score: 208
Period size: 69 Copynumber: 2.5 Consensus size: 69
37712724 ACTTTTTAAG
* * * * * * *
37712734 GGATTAAAATT-ATTTTTTACTGAAAA-ATATGAATAAGAGAGCTATGAGAGTATTTTCTAATTA
1 GGATTAAAATTAACTTTTTAATGAAAATA-ATGAAGAAGAGAACTATAAGAGTATTCTCTAATCA
37712797 ATGT-
65 ATGTA
*
37712801 GAGATTAAAATTAACTTTTTAATGAAAATAATGAAGAAGTGAACTATAAGAGTATTCTCTAATCA
1 G-GATTAAAATTAACTTTTTAATGAAAATAATGAAGAAGAGAACTATAAGAGTATTCTCTAATCA
37712866 ATGTA
65 ATGTA
* * *
37712871 GGATTAAAAATAACTTTTTAATAAAAATAATAAAGA
1 GGATTAAAATTAACTTTTTAATGAAAATAATGAAGA
37712907 TATTACCACT
Statistics
Matches: 91, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
67 1 0.01
68 10 0.11
69 78 0.86
70 2 0.02
ACGTcount: A:0.46, C:0.05, G:0.14, T:0.35
Consensus pattern (69 bp):
GGATTAAAATTAACTTTTTAATGAAAATAATGAAGAAGAGAACTATAAGAGTATTCTCTAATCAA
TGTA
Found at i:37713216 original size:20 final size:21
Alignment explanation
Indices: 37713187--37713243 Score: 66
Period size: 19 Copynumber: 2.8 Consensus size: 21
37713177 TTTTTCAATT
37713187 ATAA-ATAATTTTAAAAAATA
1 ATAATATAATTTTAAAAAATA
*
37713207 A-AATATAA-TTTAAAATATA
1 ATAATATAATTTTAAAAAATA
37713226 ATAATATATTATTTTAAA
1 ATAATATA--ATTTTAAA
37713244 TTTATTTATA
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
19 13 0.42
20 11 0.35
22 1 0.03
23 6 0.19
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (21 bp):
ATAATATAATTTTAAAAAATA
Found at i:37716059 original size:8 final size:8
Alignment explanation
Indices: 37716043--37716146 Score: 56
Period size: 8 Copynumber: 12.5 Consensus size: 8
37716033 GCCATCAATT
37716043 ATTTAAAA
1 ATTTAAAA
37716051 ATTTTAAAA
1 A-TTTAAAA
*
37716060 AGTTAAAA
1 ATTTAAAA
37716068 A---AATAA
1 ATTTAA-AA
37716074 A--TAAAA
1 ATTTAAAA
37716080 ACTTATAAAA
1 A-TT-TAAAA
37716090 ATTTTTAAAA
1 A--TTTAAAA
*
37716100 AATTAAAA
1 ATTTAAAA
*
37716108 AGTATTTAAA
1 A-T-TTAAAA
37716118 ATTTAAAA
1 ATTTAAAA
37716126 ATTTAAAA
1 ATTTAAAA
*
37716134 ATTATTAAA
1 ATT-TAAAA
37716143 ATTT
1 ATTT
37716147 CATAAAGAGT
Statistics
Matches: 78, Mismatches: 7, Indels: 22
0.73 0.07 0.21
Matches are distributed among these distances:
5 2 0.03
6 6 0.08
7 2 0.03
8 32 0.41
9 16 0.21
10 18 0.23
11 2 0.03
ACGTcount: A:0.61, C:0.01, G:0.02, T:0.37
Consensus pattern (8 bp):
ATTTAAAA
Found at i:37716108 original size:18 final size:17
Alignment explanation
Indices: 37716085--37716137 Score: 56
Period size: 18 Copynumber: 3.1 Consensus size: 17
37716075 TAAAAACTTA
37716085 TAAAAATTTTTAAAAAAT
1 TAAAAATTTTT-AAAAAT
* *
37716103 TAAAAAGTATTTAAAATT
1 TAAAAA-TTTTTAAAAAT
37716121 TAAAAA--TTTAAAAAT
1 TAAAAATTTTTAAAAAT
37716136 TA
1 TA
37716138 TTAAAATTTC
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
15 10 0.32
18 17 0.55
19 4 0.13
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (17 bp):
TAAAAATTTTTAAAAAT
Found at i:37716131 original size:26 final size:25
Alignment explanation
Indices: 37716093--37716146 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 25
37716083 TATAAAAATT
37716093 TTTAAAAAATTAAAAAGTATTTAAAA
1 TTTAAAAAATTAAAAAGTA-TTAAAA
* *
37716119 TTTAAAAATTTAAAAATTATTAAAA
1 TTTAAAAAATTAAAAAGTATTAAAA
37716144 TTT
1 TTT
37716147 CATAAAGAGT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
25 9 0.35
26 17 0.65
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (25 bp):
TTTAAAAAATTAAAAAGTATTAAAA
Found at i:37716133 original size:25 final size:25
Alignment explanation
Indices: 37716097--37716146 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
37716087 AAAATTTTTA
*
37716097 AAAAATT-AAAAAGTATTTAAAATTT
1 AAAAATTAAAAAATTA-TTAAAATTT
*
37716122 AAAAATTTAAAAATTATTAAAATTT
1 AAAAATTAAAAAATTATTAAAATTT
37716147 CATAAAGAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 16 0.70
26 7 0.30
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (25 bp):
AAAAATTAAAAAATTATTAAAATTT
Found at i:37716143 original size:10 final size:10
Alignment explanation
Indices: 37716039--37716143 Score: 66
Period size: 10 Copynumber: 11.1 Consensus size: 10
37716029 CCACGCCATC
37716039 AATTATTTAAA
1 AATTA-TTAAA
37716050 AATT-TTAAA
1 AATTATTAAA
*
37716059 AAGTTA-AAAA
1 AA-TTATTAAA
* *
37716069 AATAAATAAA
1 AATTATTAAA
37716079 AACTTA-TAAA
1 AA-TTATTAAA
*
37716089 AATTTTTAAA
1 AATTATTAAA
37716099 AA--ATTAAA
1 AATTATTAAA
* *
37716107 AAGTATTTAA
1 AATTATTAAA
37716117 AA-T-TTAAA
1 AATTATTAAA
37716125 AA-T-TTAAA
1 AATTATTAAA
37716133 AATTATTAAA
1 AATTATTAAA
37716143 A
1 A
37716144 TTTCATAAAG
Statistics
Matches: 77, Mismatches: 8, Indels: 19
0.74 0.08 0.18
Matches are distributed among these distances:
8 21 0.27
9 13 0.17
10 37 0.48
11 6 0.08
ACGTcount: A:0.62, C:0.01, G:0.02, T:0.35
Consensus pattern (10 bp):
AATTATTAAA
Found at i:37716171 original size:46 final size:45
Alignment explanation
Indices: 37716046--37716173 Score: 110
Period size: 46 Copynumber: 3.0 Consensus size: 45
37716036 ATCAATTATT
* *
37716046 TAAAAATT-TTAAAAAGTTAAAAA--A-ATAA-ATA-AAAACTTA
1 TAAAAATTATTAAAAAATTAAAAAGTATATAATATATAAAAATTA
* * * *
37716085 TAAAAATTTTTAAAAAATTAAAAAGTATTTAAAATTTAAAAATT-
1 TAAAAATTATTAAAAAATTAAAAAGTATATAATATATAAAAATTA
*
37716129 TAAAAATTATT-AAAATTTCATAAAGAGTATATAATATATAAAAAT
1 TAAAAATTATTAAAAAATT-A-AAA-AGTATATAATATATAAAAAT
37716174 GGTAAAAAAG
Statistics
Matches: 71, Mismatches: 9, Indels: 11
0.78 0.10 0.12
Matches are distributed among these distances:
39 8 0.11
40 14 0.20
42 1 0.01
43 9 0.13
44 13 0.18
45 9 0.13
46 17 0.24
ACGTcount: A:0.61, C:0.02, G:0.03, T:0.34
Consensus pattern (45 bp):
TAAAAATTATTAAAAAATTAAAAAGTATATAATATATAAAAATTA
Found at i:37717801 original size:43 final size:43
Alignment explanation
Indices: 37717738--37717823 Score: 115
Period size: 43 Copynumber: 2.0 Consensus size: 43
37717728 TATGTGATTC
*
37717738 CGATATGTGTTTACGAGTAAGACC-CTGTCTGGGACAG-TGGCAT
1 CGATATGTGGTTACGAGTAAGACCAC-GTCTGGGAC-GTTGGCAT
37717781 CGATATGTGGTTAC-ATGTAAGACCACGTCTGGGACGTTGGCAT
1 CGATATGTGGTTACGA-GTAAGACCACGTCTGGGACGTTGGCAT
37717824 TGTACGATTT
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
42 2 0.05
43 36 0.92
44 1 0.03
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (43 bp):
CGATATGTGGTTACGAGTAAGACCACGTCTGGGACGTTGGCAT
Found at i:37723220 original size:94 final size:94
Alignment explanation
Indices: 37723115--37723292 Score: 250
Period size: 94 Copynumber: 1.9 Consensus size: 94
37723105 CCATCATTGA
** *
37723115 GGCTGATGCATGTCCCAAACACGTTTTACACTAG-CACTCATCTCTACACCAATGCCATGTCCCA
1 GGCTGATGCATGTCCCAAACACGTCCTACACTAGAC-CTCATCTCAACACCAATGCCATGTCCCA
37723179 GACATGGTCTTACACAGGCTATCATAAAAT
65 GACATGGTCTTACACAGGCTATCATAAAAT
* * ** * *
37723209 GGCTGATGCATGTCCCAGACACGTCCTACACTAGACCTCGTCTCAATGCCGATGCCATGTCCTAG
1 GGCTGATGCATGTCCCAAACACGTCCTACACTAGACCTCATCTCAACACCAATGCCATGTCCCAG
*
37723274 ACATGGTCTTACACTGGCT
66 ACATGGTCTTACACAGGCT
37723293 CTCACATAAC
Statistics
Matches: 73, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
94 72 0.99
95 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.18, T:0.25
Consensus pattern (94 bp):
GGCTGATGCATGTCCCAAACACGTCCTACACTAGACCTCATCTCAACACCAATGCCATGTCCCAG
ACATGGTCTTACACAGGCTATCATAAAAT
Found at i:37725059 original size:46 final size:45
Alignment explanation
Indices: 37724909--37725132 Score: 207
Period size: 46 Copynumber: 4.8 Consensus size: 45
37724899 ATTTGTTTGT
* * * *
37724909 GAGCTAGTGTAAGACATGTCCGGGACATGCATCGGCCACATTATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCA-GATGA
* * *
37724955 GAGCCAGTGTAAGACCATGTCTGGGAAATGGCATCGGCAATAAGATGA
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-CTCAGATGA
* * *
37725003 GAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGACGTA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTC-AGATG-A
* * *
37725050 -AGCCAGTGTAAGACATGTCTGGGACATGCATCGACTATGAGATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGC-CTCAGATGA
* ** *
37725095 TAGTTAGTGTAAGACCATGTCTAGGACATGGCATCGGC
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
37725133 ACCTTACCCA
Statistics
Matches: 146, Mismatches: 23, Indels: 16
0.79 0.12 0.09
Matches are distributed among these distances:
45 2 0.01
46 71 0.49
47 40 0.27
48 32 0.22
49 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.22
Consensus pattern (45 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCAGATGA
Found at i:37728188 original size:24 final size:24
Alignment explanation
Indices: 37728164--37728248 Score: 100
Period size: 24 Copynumber: 3.6 Consensus size: 24
37728154 ATCAGAAAGT
* *
37728164 TCACTAAGAACCTTATCGGGAAGT
1 TCACAAAGAACCTTATCGGGAAGC
*
37728188 TCACAAAGAACCATATCGGGAAGC
1 TCACAAAGAACCTTATCGGGAAGC
* * *
37728212 TCATAATGATCC-TATCGGGAAGC
1 TCACAAAGAACCTTATCGGGAAGC
*
37728235 TCACAAAGAGCCTT
1 TCACAAAGAACCTT
37728249 TAATTGGGAT
Statistics
Matches: 51, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
23 20 0.39
24 31 0.61
ACGTcount: A:0.35, C:0.24, G:0.20, T:0.21
Consensus pattern (24 bp):
TCACAAAGAACCTTATCGGGAAGC
Found at i:37736135 original size:23 final size:23
Alignment explanation
Indices: 37736109--37736155 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
37736099 AAGCGAGCAT
*
37736109 TATCGGGAAGCTCATAAAGAGCC
1 TATCGGGAAGCTCACAAAGAGCC
37736132 TATCGGGAAGCTCACAAAGAGCC
1 TATCGGGAAGCTCACAAAGAGCC
37736155 T
1 T
37736156 TTAATCAGGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.34, C:0.23, G:0.26, T:0.17
Consensus pattern (23 bp):
TATCGGGAAGCTCACAAAGAGCC
Found at i:37741853 original size:49 final size:46
Alignment explanation
Indices: 37741793--37742013 Score: 171
Period size: 49 Copynumber: 4.7 Consensus size: 46
37741783 ATATGTTGCC
*
37741793 GATGCCATGTCCCGGACATGGTCTTACACTGGCTATCATCATCGAGGCT
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTATCATCATCGA-GCT
* * * * * * *
37741842 GACGCCATGTCCCAAACATGGTTTTATACTAGCTCTCGTCTATACGTA-CT
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTATCATC-AT-CG-AGCT
* * *
37741892 GATGCATGTCCCAGACATGTCTTACACTAGC-A-CAAC-TCTTAGCT
1 GATGCATGTCCCAGACATGTCTTACACTGGCTATCATCATC-GAGCT
* * * * *
37741936 GATGCGTGTCCTAGACACGTCTTACACTGGCTATCATCGTCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTATCATCATCGA-GCT
*
37741983 GATGCATGTCCTAGACATGTCTTACACTGGC
1 GATGCATGTCCCAGACATGTCTTACACTGGC
37742014 ACACAAGTAA
Statistics
Matches: 138, Mismatches: 25, Indels: 20
0.75 0.14 0.11
Matches are distributed among these distances:
43 2 0.01
44 30 0.22
45 1 0.01
46 6 0.04
47 33 0.24
48 11 0.08
49 45 0.33
50 7 0.05
51 2 0.01
52 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.28
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTATCATCATCGAGCT
Found at i:37741939 original size:44 final size:45
Alignment explanation
Indices: 37741890--37742016 Score: 150
Period size: 47 Copynumber: 2.8 Consensus size: 45
37741880 TCTATACGTA
* * *
37741890 CTGATGCATGTCCCAGACATGTCTTACACTAGCACAAC-TCTTA-G
1 CTGATGCATGTCCTAGACATGTCTTACACTGGCACAACGTC-GAGG
* * *
37741934 CTGATGCGTGTCCTAGACACGTCTTACACTGGCTATCATCGTCGAGG
1 CTGATGCATGTCCTAGACATGTCTTACACTGGC-A-CAACGTCGAGG
*
37741981 CCGATGCATGTCCTAGACATGTCTTACACTGGCACA
1 CTGATGCATGTCCTAGACATGTCTTACACTGGCACA
37742017 CAAGTAATCC
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
44 29 0.41
45 3 0.04
46 5 0.07
47 33 0.47
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (45 bp):
CTGATGCATGTCCTAGACATGTCTTACACTGGCACAACGTCGAGG
Found at i:37742411 original size:30 final size:30
Alignment explanation
Indices: 37742355--37742411 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
37742345 AATTCACATT
* * **
37742355 TTTGGTAAAATGACCATTTTGTCCCTAGAC
1 TTTGGCAAAATAACCATTTTACCCCTAGAC
37742385 TTTGGCAAAATAACCATTTTACCCCTA
1 TTTGGCAAAATAACCATTTTACCCCTA
37742412 TGCTCGAAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.30, C:0.23, G:0.12, T:0.35
Consensus pattern (30 bp):
TTTGGCAAAATAACCATTTTACCCCTAGAC
Found at i:37746204 original size:30 final size:30
Alignment explanation
Indices: 37746170--37746226 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
37746160 TAACTCAAAA
37746170 TTTTGCAAAATTACAATTTTGCCCCTAAAC
1 TTTTGCAAAATTACAATTTTGCCCCTAAAC
* * * *
37746200 TTTTGCATATTTACACTTTTTCCCCTA
1 TTTTGCAAAATTACAATTTTGCCCCTA
37746227 GGCTCGAGAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.26, C:0.25, G:0.05, T:0.44
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCTAAAC
Found at i:37748925 original size:48 final size:48
Alignment explanation
Indices: 37748854--37749025 Score: 281
Period size: 48 Copynumber: 3.6 Consensus size: 48
37748844 TAAAGTACCA
* **
37748854 ATGCCATGTCCCAGACATGGTCTTACACTGGCACATATACCATCGTTG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACATATATCATCGCCG
*
37748902 ATGCCATGTCCCATACATGGTCTTACACTGGCACATATATCATCGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACATATATCATCGCCG
* *
37748950 ATGCCATGTCCTAGACATAGTCTTACACTGGCACATATATCATCGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACATATATCATCGCCG
*
37748998 ATGCCATGTCCGAGACATGGTCTTACAC
1 ATGCCATGTCCCAGACATGGTCTTACAC
37749026 GGAACCTCAT
Statistics
Matches: 115, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 115 1.00
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.27
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCACATATATCATCGCCG
Found at i:37759197 original size:48 final size:48
Alignment explanation
Indices: 37759145--37759422 Score: 369
Period size: 48 Copynumber: 5.8 Consensus size: 48
37759135 AATCCACATG
* * * *
37759145 TCATCACCGATGCCATGTCCTAGATATGGTCTTACACTAGCACATATA
1 TCATCGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACATATA
*
37759193 TCATCGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCACATATA
1 TCATCGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACATATA
*
37759241 TCATCGCCGATGCCATGTCCCAGATATGGTCTTACACTGGCACATATA
1 TCATCGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACATATA
* * * *
37759289 TCATTGTCGATGCCATGTCCCAGACATAGTCTTACAGTGGCACATATA
1 TCATCGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACATATA
* * * * * * *
37759337 TCATCACTGATGCCATGTCCCATACATGGTCTTATACAGGAACATATC
1 TCATCGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACATATA
*
37759385 TCGGAT-GTCGATGCCATGTCCCAGACATGGTCTTACAC
1 TC--ATCGCCGATGCCATGTCCCAGACATGGTCTTACAC
37759423 GGAATCTCAT
Statistics
Matches: 200, Mismatches: 28, Indels: 3
0.87 0.12 0.01
Matches are distributed among these distances:
48 171 0.86
49 27 0.14
50 2 0.01
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (48 bp):
TCATCGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACATATA
Found at i:37765725 original size:50 final size:50
Alignment explanation
Indices: 37765667--37765956 Score: 342
Period size: 50 Copynumber: 5.9 Consensus size: 50
37765657 TGATGCTAGG
*
37765667 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATTGGCCTC
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
*
37765717 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTC
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
*
37765767 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCTTC
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
* * * * * * *
37765817 ---ATATGTG-TC-AGTGTAAGACTATATCTGAGACATGACATCAGCAC-C
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTC
* * * * *
37765862 TATAGATGAGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCCTC
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
* ** *
37765912 GATATACAAGAG-TCAGTGTAAGACCATGTTTGGGACATGGCATCG
1 GAGATATGAGAGCT-AGTGTAAGACCATGTCTGGGACATGGCATCG
37765957 ACTTTGATGT
Statistics
Matches: 204, Mismatches: 28, Indels: 16
0.82 0.11 0.06
Matches are distributed among these distances:
45 29 0.14
46 1 0.00
47 6 0.03
48 5 0.02
49 2 0.01
50 161 0.79
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.24
Consensus pattern (50 bp):
GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
Found at i:37765892 original size:95 final size:98
Alignment explanation
Indices: 37765667--37765938 Score: 320
Period size: 95 Copynumber: 2.8 Consensus size: 98
37765657 TGATGCTAGG
* *
37765667 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATTGGCCTCGAGATATGAGAGCTA
1 GAGAGATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC--GATATGAGAGCTA
* * *
37765732 GTGTAAGACCATGTCTGGGACATGGCATCAGCCTC
64 GTGTAAGACCATATCTGAGACATGACATCAGCCTC
* * * *
37765767 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCTTC-ATATGTG-TC-AGT
1 GAGAGATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATATGAGAGCTAGT
*
37765829 GTAAGACTATATCTGAGACATGACATCAGCAC-C
66 GTAAGACCATATCTGAGACATGACATCAGC-CTC
* * * * *
37765862 TATAGATGAGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCGATATACAAGAG-TC
1 GAGAGATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATAT--GAGAGCT-
37765926 AGTGTAAGACCAT
63 AGTGTAAGACCAT
37765939 GTTTGGGACA
Statistics
Matches: 147, Mismatches: 18, Indels: 14
0.82 0.10 0.08
Matches are distributed among these distances:
95 74 0.50
96 6 0.04
97 6 0.04
98 1 0.01
100 60 0.41
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (98 bp):
GAGAGATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATATGAGAGCTAGT
GTAAGACCATATCTGAGACATGACATCAGCCTC
Found at i:37765996 original size:48 final size:49
Alignment explanation
Indices: 37765675--37765999 Score: 227
Period size: 50 Copynumber: 6.7 Consensus size: 49
37765665 GGGAGATATG
* * * * * *
37765675 AGAGCTAGTGTAAGACCATGTCTGGGACATGGCATTGGCCTCGAGATATG
1 AGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGACCTCGATATA-A
* * * *
37765725 AGAGCTAGTGTAAGACCATGTCTGGGACATGGCATC-AGCCTCGAGATATG
1 AGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGA-CCTCGATATA-A
* * * *
37765775 AGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCTTC-ATAT--
1 AGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGACCTCGATATAA
* * * * * * *
37765821 -GTGTCAGTGTAAGACTATATCT-GAGACATGACATCAGCACCT--ATAGATG
1 AGAGCCAGTGTAAGACCATGTCTAG-GACATGGCATC-G-ACCTCGATATA-A
*
37765870 AGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCGATATACA
1 AGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGACCTCGATATA-A
* * * * * * *
37765920 AGAGTCAGTGTAAGACCATGTTTGGGACATGGCATCGACTTTGATGT-G
1 AGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGACCTCGATATAA
* * *
37765968 TGAGCCAGTGTAAAACCATGTCCAGGACATGG
1 AGAGCCAGTGTAAGACCATGTCTAGGACATGG
37766000 TGTGAGCACC
Statistics
Matches: 226, Mismatches: 37, Indels: 26
0.78 0.13 0.09
Matches are distributed among these distances:
44 1 0.00
45 27 0.12
46 4 0.02
47 2 0.01
48 29 0.13
49 4 0.02
50 158 0.70
51 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.24
Consensus pattern (49 bp):
AGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGACCTCGATATAA
Found at i:37770425 original size:41 final size:41
Alignment explanation
Indices: 37770379--37770461 Score: 157
Period size: 41 Copynumber: 2.0 Consensus size: 41
37770369 TAACCATATA
*
37770379 ATCGGCTATGTGCAAATTTAAGCATATATCCAATTTCACTT
1 ATCGGCTATGTGAAAATTTAAGCATATATCCAATTTCACTT
37770420 ATCGGCTATGTGAAAATTTAAGCATATATCCAATTTCACTT
1 ATCGGCTATGTGAAAATTTAAGCATATATCCAATTTCACTT
37770461 A
1 A
37770462 CACACCAAAT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.34, C:0.18, G:0.12, T:0.36
Consensus pattern (41 bp):
ATCGGCTATGTGAAAATTTAAGCATATATCCAATTTCACTT
Found at i:37770477 original size:41 final size:41
Alignment explanation
Indices: 37770392--37770478 Score: 104
Period size: 41 Copynumber: 2.1 Consensus size: 41
37770382 GGCTATGTGC
** * ** *
37770392 AAATTTAAGCATATATCCAATTTCACTTATCGGCTATGTGA
1 AAATTTAAGCATATATCCAATTTCACTTATCCACCAAATCA
37770433 AAATTTAAGCATATATCCAATTTCACTTA-CACACCAAATCA
1 AAATTTAAGCATATATCCAATTTCACTTATC-CACCAAATCA
37770474 AAATT
1 AAATT
37770479 ACAAACACAA
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
40 1 0.03
41 38 0.97
ACGTcount: A:0.40, C:0.20, G:0.07, T:0.33
Consensus pattern (41 bp):
AAATTTAAGCATATATCCAATTTCACTTATCCACCAAATCA
Found at i:37770622 original size:31 final size:31
Alignment explanation
Indices: 37770587--37770649 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
37770577 TCATTTTATG
37770587 ACATAACTTTTACATGGATACATTAACCAAA
1 ACATAACTTTTACATGGATACATTAACCAAA
37770618 ACATAACTTTTACATGGATACATTAACCAAA
1 ACATAACTTTTACATGGATACATTAACCAAA
37770649 A
1 A
37770650 TAAATAGCTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.46, C:0.19, G:0.06, T:0.29
Consensus pattern (31 bp):
ACATAACTTTTACATGGATACATTAACCAAA
Found at i:37771659 original size:41 final size:41
Alignment explanation
Indices: 37771631--37771777 Score: 224
Period size: 41 Copynumber: 3.6 Consensus size: 41
37771621 ATTGGCACAT
* *
37771631 AGCCTGTTAGGCAATAGGCCTGAAATAATACACCGGCATAA
1 AGCCTGCTAGGCAATAAGCCTGAAATAATACACCGGCATAA
*
37771672 AGCCTGCTAGGCAATAAGCCTGAAATAATACACCAGCATAA
1 AGCCTGCTAGGCAATAAGCCTGAAATAATACACCGGCATAA
* * *
37771713 AGCCTGCTAGGCAATAAGCCTGATATAATTCACCAGCATAA
1 AGCCTGCTAGGCAATAAGCCTGAAATAATACACCGGCATAA
37771754 AGCCTGCTAGGCAGA-AAGCCTGAA
1 AGCCTGCTAGGCA-ATAAGCCTGAA
37771778 TATCACTGAT
Statistics
Matches: 99, Mismatches: 6, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
41 98 0.99
42 1 0.01
ACGTcount: A:0.37, C:0.24, G:0.20, T:0.18
Consensus pattern (41 bp):
AGCCTGCTAGGCAATAAGCCTGAAATAATACACCGGCATAA
Found at i:37774063 original size:27 final size:27
Alignment explanation
Indices: 37774041--37774137 Score: 149
Period size: 27 Copynumber: 3.6 Consensus size: 27
37774031 TTAGTTTACC
37774041 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
*
37774068 AAATTAGCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
* * *
37774095 AAATTAGCAAAATACCCCTAATTTGTG
1 AAATTACCAAAATACCCCTAGTTTGTA
*
37774122 AAATTACTAAAATACC
1 AAATTACCAAAATACC
37774138 GTCAACCTAT
Statistics
Matches: 65, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 65 1.00
ACGTcount: A:0.43, C:0.20, G:0.08, T:0.29
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTAGTTTGTA
Found at i:37774151 original size:54 final size:54
Alignment explanation
Indices: 37774041--37774196 Score: 129
Period size: 54 Copynumber: 2.9 Consensus size: 54
37774031 TTAGTTTACC
* *** *
37774041 AAATTACCAAAATACCCCTAGTTTGTAAAATTAGCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAATTTGTAAAATTAGCAAAATACCCCTAACCTATA
* * *
37774095 AAATTAGCAAAATACCCCTAATTTGTGAAATTA-CTAAAATA-CCGTCAACCTATA
1 AAATTACCAAAATACCCCTAATTTGTAAAATTAGC-AAAATACCCCT-AACCTATA
*** * * * *
37774149 AAATTATTGAAATA-CCCTCGACTTGTAAAATTACCAAAGTACCCCTAA
1 AAATTACCAAAATACCCCT-AATTTGTAAAATTAGCAAAATACCCCTAA
37774197 TTTACAGAAT
Statistics
Matches: 81, Mismatches: 16, Indels: 10
0.76 0.15 0.09
Matches are distributed among these distances:
53 8 0.10
54 69 0.85
55 4 0.05
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.28
Consensus pattern (54 bp):
AAATTACCAAAATACCCCTAATTTGTAAAATTAGCAAAATACCCCTAACCTATA
Found at i:37774152 original size:27 final size:27
Alignment explanation
Indices: 37774122--37774192 Score: 70
Period size: 27 Copynumber: 2.6 Consensus size: 27
37774112 CTAATTTGTG
*
37774122 AAATTACTAAAATACCGTCAACCTATA
1 AAATTACTAAAATACCCTCAACCTATA
* * * * *
37774149 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACTAAAATACCCTCAACCTATA
* *
37774176 AAATTACCAAAGTACCC
1 AAATTACTAAAATACCC
37774193 CTAATTTACA
Statistics
Matches: 34, Mismatches: 10, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.44, C:0.23, G:0.07, T:0.27
Consensus pattern (27 bp):
AAATTACTAAAATACCCTCAACCTATA
Found at i:37774218 original size:27 final size:27
Alignment explanation
Indices: 37774196--37774406 Score: 298
Period size: 27 Copynumber: 7.9 Consensus size: 27
37774186 AGTACCCCTA
*
37774196 ATTTACAGAATTACCATTTTACCCTC-
1 ATTTACAAAATTACCATTTTACCCTCG
***
37774222 ATTTACAAAATTATTGTTTTACCCTCG
1 ATTTACAAAATTACCATTTTACCCTCG
***
37774249 ATTTACAAAATTATTGTTTTACCCTCG
1 ATTTACAAAATTACCATTTTACCCTCG
*
37774276 ATTTACAAAATTACTATTTTACCCTCG
1 ATTTACAAAATTACCATTTTACCCTCG
*
37774303 ATTTACAAAATTACCGTTTTACCCTCG
1 ATTTACAAAATTACCATTTTACCCTCG
*
37774330 ATTTACAAAATTACTATTTTACCCTCG
1 ATTTACAAAATTACCATTTTACCCTCG
* *
37774357 AGTTACAGAATTACCATTTTACCCTCG
1 ATTTACAAAATTACCATTTTACCCTCG
*
37774384 ATTTATAAAATTACCATTTTACC
1 ATTTACAAAATTACCATTTTACC
37774407 TTTAAGGTGT
Statistics
Matches: 168, Mismatches: 16, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
26 22 0.13
27 146 0.87
ACGTcount: A:0.32, C:0.22, G:0.06, T:0.40
Consensus pattern (27 bp):
ATTTACAAAATTACCATTTTACCCTCG
Found at i:37774340 original size:81 final size:81
Alignment explanation
Indices: 37774196--37774406 Score: 334
Period size: 81 Copynumber: 2.6 Consensus size: 81
37774186 AGTACCCCTA
**
37774196 ATTTACAGAATTACCATTTTACCCTC-ATTTACAAAATTATTGTTTTACCCTCGATTTACAAAAT
1 ATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAAAAT
* *
37774260 TATTGTTTTACCCTCG
66 TACTATTTTACCCTCG
* *
37774276 ATTTACAAAATTACTATTTTACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAAAAT
1 ATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAAAAT
37774341 TACTATTTTACCCTCG
66 TACTATTTTACCCTCG
* * *
37774357 AGTTACAGAATTACCATTTTACCCTCGATTTATAAAATTACCATTTTACC
1 ATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACCGTTTTACC
37774407 TTTAAGGTGT
Statistics
Matches: 119, Mismatches: 11, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
80 24 0.20
81 95 0.80
ACGTcount: A:0.32, C:0.22, G:0.06, T:0.40
Consensus pattern (81 bp):
ATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAAAAT
TACTATTTTACCCTCG
Found at i:37774884 original size:6 final size:6
Alignment explanation
Indices: 37774847--37774952 Score: 81
Period size: 6 Copynumber: 17.3 Consensus size: 6
37774837 TTGCATTCAC
* * * *
37774847 ATTCTG ATTTTG ATTCTG TTTCTTA ATACTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTC-TG ATTCTG ATTCTG ATTCTG ATTCTG
* * * * *
37774896 ATTCTA ATTCTG -TCACCTG ATTCTA ATTCTG ATTCTC ATTTTG ATTCT-
1 ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG
37774944 AGTTCTG AT
1 A-TTCTG AT
37774953 AATGTTTCTT
Statistics
Matches: 76, Mismatches: 18, Indels: 12
0.72 0.17 0.11
Matches are distributed among these distances:
5 2 0.03
6 66 0.87
7 7 0.09
8 1 0.01
ACGTcount: A:0.20, C:0.17, G:0.12, T:0.51
Consensus pattern (6 bp):
ATTCTG
Found at i:37774898 original size:37 final size:37
Alignment explanation
Indices: 37774847--37774931 Score: 100
Period size: 37 Copynumber: 2.3 Consensus size: 37
37774837 TTGCATTCAC
* ** *
37774847 ATTCTGATTTTGATTCTGTTTCT-TAATACTGATTCTG
1 ATTCTGATTCTGATTCTAATTCTGTAA-ACTGATTCTA
* *
37774884 ATTCTGATTCTGATTCTAATTCTGTCACCTGATTCTA
1 ATTCTGATTCTGATTCTAATTCTGTAAACTGATTCTA
37774921 ATTCTGATTCT
1 ATTCTGATTCT
37774932 CATTTTGATT
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
37 39 0.95
38 2 0.05
ACGTcount: A:0.20, C:0.18, G:0.12, T:0.51
Consensus pattern (37 bp):
ATTCTGATTCTGATTCTAATTCTGTAAACTGATTCTA
Found at i:37774908 original size:43 final size:43
Alignment explanation
Indices: 37774841--37774950 Score: 112
Period size: 43 Copynumber: 2.6 Consensus size: 43
37774831 TTGGGATTGC
* * * ** * *
37774841 ATTCACATTCTGATTTTGATTCTGTTTCTTAATACTGATTCTG
1 ATTCTCATTCTGATTCTAATTCTGTCACCTAATACTAATTCTG
* * *
37774884 ATTCTGATTCTGATTCTAATTCTGTCACCTGATTCTAATTCTG
1 ATTCTCATTCTGATTCTAATTCTGTCACCTAATACTAATTCTG
* *
37774927 ATTCTCATTTTGATTCTAGTTCTG
1 ATTCTCATTCTGATTCTAATTCTG
37774951 ATAATGTTTC
Statistics
Matches: 54, Mismatches: 13, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
43 54 1.00
ACGTcount: A:0.20, C:0.18, G:0.12, T:0.50
Consensus pattern (43 bp):
ATTCTCATTCTGATTCTAATTCTGTCACCTAATACTAATTCTG
Found at i:37776936 original size:27 final size:27
Alignment explanation
Indices: 37776906--37777056 Score: 162
Period size: 27 Copynumber: 5.6 Consensus size: 27
37776896 TTAGTTTTCC
*
37776906 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
* * * * * *
37776933 AAATTGCTAAACTA-CCATTGATT-TA
1 AAATTACCAAAATACCCCTAGTTTGTA
37776958 CCAAATTACCAAAATACCCCTAGTTTGTA
1 --AAATTACCAAAATACCCCTAGTTTGTA
37776987 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
* * *
37777014 AAATTACCAAAATACCTCTAATTTGTG
1 AAATTACCAAAATACCCCTAGTTTGTA
**
37777041 AAATTACTGAAATACC
1 AAATTACCAAAATACC
37777057 GTCGACCTAT
Statistics
Matches: 103, Mismatches: 17, Indels: 8
0.80 0.13 0.06
Matches are distributed among these distances:
25 2 0.02
26 6 0.06
27 87 0.84
28 6 0.06
29 2 0.02
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.30
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTAGTTTGTA
Found at i:37777110 original size:27 final size:27
Alignment explanation
Indices: 37776906--37777129 Score: 134
Period size: 27 Copynumber: 8.3 Consensus size: 27
37776896 TTAGTTTTCC
*
37776906 AAATTACCAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-GATTTGTA
* * * * * ***
37776933 AAATTGCTAAACTACCATTGATTTACC
1 AAATTACCAAAATACCCTCGATTTGTA
*
37776960 AAATTACCAAAATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCTCGA-TTTGTA
*
37776987 AAATTACCAAAATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCTCGA-TTTGTA
* *
37777014 AAATTACCAAAATA-CCTCTAATTTGTG
1 AAATTACCAAAATACCCTC-GATTTGTA
** * ** *
37777041 AAATTACTGAAATACCGTCGACCTATA
1 AAATTACCAAAATACCCTCGATTTGTA
*** *
37777068 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* *
37777095 AAATTACCAAAGTACCC-CTGATTTATA
1 AAATTACCAAAATACCCTC-GATTTGTA
*
37777122 GAATTACC
1 AAATTACC
37777130 GTTTTACCCT
Statistics
Matches: 152, Mismatches: 39, Indels: 12
0.75 0.19 0.06
Matches are distributed among these distances:
26 4 0.03
27 144 0.95
28 4 0.03
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.30
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGATTTGTA
Found at i:37777137 original size:27 final size:27
Alignment explanation
Indices: 37777110--37777382 Score: 368
Period size: 27 Copynumber: 10.1 Consensus size: 27
37777100 ACCAAAGTAC
* *
37777110 CCCT-GATTTATAGAATTACCGTTTTA
1 CCCTCGATTTACAAAATTACCGTTTTA
*
37777136 CCCTCGATTTACAAAATTATCGTTTTA
1 CCCTCGATTTACAAAATTACCGTTTTA
**
37777163 CCCTCGATTTACAAAATTATTGTTTTA
1 CCCTCGATTTACAAAATTACCGTTTTA
* *
37777190 CCCTCGATTTACAGAATTACTGTTTTA
1 CCCTCGATTTACAAAATTACCGTTTTA
* *
37777217 CCCACGATTTACAAAATTACTGTTTTA
1 CCCTCGATTTACAAAATTACCGTTTTA
*
37777244 CCCTCGATTTACAAAATTACCATTTTA
1 CCCTCGATTTACAAAATTACCGTTTTA
* * *
37777271 CCCTCGATTGACAGAATTACCATTTTA
1 CCCTCGATTTACAAAATTACCGTTTTA
*
37777298 CCCTCGATTTACAAAATTACTGTTTTA
1 CCCTCGATTTACAAAATTACCGTTTTA
**
37777325 CCCTCGATTTACAAAATTACAATTTTA
1 CCCTCGATTTACAAAATTACCGTTTTA
* * *
37777352 CCCTCGATTTATAAAGTTACCATTTTA
1 CCCTCGATTTACAAAATTACCGTTTTA
37777379 CCCT
1 CCCT
37777383 TAGGGTGTTA
Statistics
Matches: 224, Mismatches: 22, Indels: 1
0.91 0.09 0.00
Matches are distributed among these distances:
26 4 0.02
27 220 0.98
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.39
Consensus pattern (27 bp):
CCCTCGATTTACAAAATTACCGTTTTA
Found at i:37777683 original size:27 final size:26
Alignment explanation
Indices: 37777643--37777702 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
37777633 ACATATATAG
* *
37777643 ATATCTATTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
37777669 ATATCTGTATCTGGTGACTTTGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
37777696 ATATCTG
1 ATATCTG
37777703 GCAGTCTCGC
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.23, C:0.22, G:0.18, T:0.37
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:37777860 original size:6 final size:6
Alignment explanation
Indices: 37777821--37777920 Score: 76
Period size: 6 Copynumber: 16.3 Consensus size: 6
37777811 TTACATTCAC
* * * * *
37777821 ATTCTG ATTTTG ATTTTG TTTCCTA ATACTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * * *
37777870 ATTCTG -TCACCTG ATTCTA ATTCTG ATTCTT ATTTTG ATTCTA ATTCTG
1 ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG
37777919 AT
1 AT
37777921 AATGTTTCTT
Statistics
Matches: 72, Mismatches: 18, Indels: 8
0.73 0.18 0.08
Matches are distributed among these distances:
5 1 0.01
6 65 0.90
7 5 0.07
8 1 0.01
ACGTcount: A:0.20, C:0.16, G:0.12, T:0.52
Consensus pattern (6 bp):
ATTCTG
Found at i:37777872 original size:37 final size:37
Alignment explanation
Indices: 37777821--37777911 Score: 110
Period size: 37 Copynumber: 2.5 Consensus size: 37
37777811 TTACATTCAC
* ** *
37777821 ATTCTGATTTTGATTTTGTTTCCTAATACTGATTCTG
1 ATTCTGATTTTGATTCTGTCACCTAATACTAATTCTG
* * *
37777858 ATTCTGATTCTGATTCTGTCACCTGATTCTAATTCTG
1 ATTCTGATTTTGATTCTGTCACCTAATACTAATTCTG
*
37777895 ATTCTTATTTTGATTCT
1 ATTCTGATTTTGATTCT
37777912 AATTCTGATA
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
37 45 1.00
ACGTcount: A:0.19, C:0.16, G:0.12, T:0.53
Consensus pattern (37 bp):
ATTCTGATTTTGATTCTGTCACCTAATACTAATTCTG
Found at i:37777929 original size:18 final size:17
Alignment explanation
Indices: 37777908--37777941 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
37777898 CTTATTTTGA
37777908 TTCTAATTCTGATAATGT
1 TTCTAATTCTG-TAATGT
*
37777926 TTCTTATTCTGTAATG
1 TTCTAATTCTGTAATG
37777942 GGCTAAGGCC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.24, C:0.12, G:0.12, T:0.53
Consensus pattern (17 bp):
TTCTAATTCTGTAATGT
Done.