Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 132 of 362
Found at i:43712905 original size:82 final size:81
Alignment explanation
Indices: 43712790--43712945 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
43712780 AAATTGTACA
* * *
43712790 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
43712854 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
43712871 GCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
43712936 TGCGAGTTGA
65 TGCGAATTGA
43712946 ATATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 18 0.27
82 48 0.73
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:43712957 original size:82 final size:81
Alignment explanation
Indices: 43712786--43712966 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
43712776 ATTAAAATTG
* * *
43712786 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
*
43712851 GTGTGCGAATTGACCA
66 GTGTGCGAATTGAACA
* * ** *
43712867 TGCGGCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACT
1 TACAGCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* *
43712931 AAGTGTGCGAGTTGAATA
64 AAGTGTGCGAATTGAACA
* *
43712949 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
43712967 GGCTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 20 0.24
82 63 0.76
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGAACA
Found at i:43712975 original size:27 final size:27
Alignment explanation
Indices: 43712871--43712977 Score: 79
Period size: 27 Copynumber: 3.9 Consensus size: 27
43712861 TGACCATGCG
* * *
43712871 GCACTAAGTGTGCGAGTCTGACTATGTA
1 GCACTAAGTGTGCGAG-CTCAATATATA
** * * ** *
43712899 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
43712926 GCACTAAGTGTGCGAGTTGAATATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
43712953 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
43712978 CATTCGTGAA
Statistics
Matches: 65, Mismatches: 14, Indels: 1
0.81 0.17 0.01
Matches are distributed among these distances:
27 50 0.77
28 15 0.23
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:43716789 original size:23 final size:22
Alignment explanation
Indices: 43716738--43716789 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 22
43716728 CCTCGTCTTT
*
43716738 TTCTTTTGTTTCTTTTTCTAAC
1 TTCTTTTCTTTCTTTTTCTAAC
43716760 -TCATTTTCTCTTCTTTCTTC-AAC
1 TTC-TTTTCT-TTCTTT-TTCTAAC
43716783 TTCTTTT
1 TTCTTTT
43716790 TCAATTTCTT
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 2 0.08
22 5 0.20
23 13 0.52
24 5 0.20
ACGTcount: A:0.10, C:0.23, G:0.02, T:0.65
Consensus pattern (22 bp):
TTCTTTTCTTTCTTTTTCTAAC
Found at i:43716798 original size:12 final size:12
Alignment explanation
Indices: 43716747--43716801 Score: 51
Period size: 12 Copynumber: 4.6 Consensus size: 12
43716737 TTTCTTTTGT
43716747 TTCTTTTTCTAAC
1 TTCTTTTTC-AAC
* *
43716760 -TCATTTTC-TC
1 TTCTTTTTCAAC
43716770 TTCTTTCTTCAAC
1 TTCTTT-TTCAAC
*
43716783 TTCTTTTTCAAT
1 TTCTTTTTCAAC
43716795 TTCTTTT
1 TTCTTTT
43716802 GTTTCACATT
Statistics
Matches: 34, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
10 1 0.03
11 4 0.12
12 22 0.65
13 7 0.21
ACGTcount: A:0.13, C:0.24, G:0.00, T:0.64
Consensus pattern (12 bp):
TTCTTTTTCAAC
Found at i:43721495 original size:27 final size:27
Alignment explanation
Indices: 43721465--43721619 Score: 208
Period size: 27 Copynumber: 5.7 Consensus size: 27
43721455 TATTGAAATG
*
43721465 CCCTCGATTTATAGAATTACTGTTTTA
1 CCCTCGATTTACAGAATTACTGTTTTA
*
43721492 CCCTCAATTTACAGAATTA-TCGTTTTA
1 CCCTCGATTTACAGAATTACT-GTTTTA
*
43721519 CCCTCGATTT-CTAGAATTACTATTTTA
1 CCCTCGATTTAC-AGAATTACTGTTTTA
*
43721546 CCCTCGATTTATAGAATTACTGTTTTA
1 CCCTCGATTTACAGAATTACTGTTTTA
*
43721573 CCCTTGATTTACAGAATTA-TCGTTTTA
1 CCCTCGATTTACAGAATTACT-GTTTTA
*
43721600 CCCTCGATTTACAAAATTAC
1 CCCTCGATTTACAGAATTAC
43721620 CAAAATACCC
Statistics
Matches: 112, Mismatches: 10, Indels: 11
0.84 0.08 0.08
Matches are distributed among these distances:
26 3 0.03
27 108 0.96
28 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.09, T:0.42
Consensus pattern (27 bp):
CCCTCGATTTACAGAATTACTGTTTTA
Found at i:43721618 original size:81 final size:81
Alignment explanation
Indices: 43721465--43721619 Score: 267
Period size: 81 Copynumber: 1.9 Consensus size: 81
43721455 TATTGAAATG
43721465 CCCTCGATTTATAGAATTACTGTTTTACCCTCAATTTACAGAATTATCGTTTTACCCTCGATTTC
1 CCCTCGATTTATAGAATTACTGTTTTACCCTCAATTTACAGAATTATCGTTTTACCCTCGATTTC
*
43721530 TAGAATTACTATTTTA
66 TAAAATTACTATTTTA
**
43721546 CCCTCGATTTATAGAATTACTGTTTTACCCTTGATTTACAGAATTATCGTTTTACCCTCGATTTA
1 CCCTCGATTTATAGAATTACTGTTTTACCCTCAATTTACAGAATTATCGTTTTACCCTCGATTT-
43721611 C-AAAATTAC
65 CTAAAATTAC
43721620 CAAAATACCC
Statistics
Matches: 70, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
81 69 0.99
82 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.09, T:0.42
Consensus pattern (81 bp):
CCCTCGATTTATAGAATTACTGTTTTACCCTCAATTTACAGAATTATCGTTTTACCCTCGATTTC
TAAAATTACTATTTTA
Found at i:43721628 original size:27 final size:27
Alignment explanation
Indices: 43721598--43721792 Score: 184
Period size: 27 Copynumber: 7.2 Consensus size: 27
43721588 ATTATCGTTT
**
43721598 TACCCTCGATTTACAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
* *
43721625 TACCCTCGATTAGGAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
*
43721652 TACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTGTAAAATTACCAAAA
* *
43721679 TACCC-CTATTTTGTAAAATTACCGAAA
1 TACCCTCGA-TTTGTAAAATTACCAAAA
* * *
43721706 TACCACT-GGTTTGTGAAATTACCGAAA
1 TACC-CTCGATTTGTAAAATTACCAAAA
**
43721733 TACCCTTAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
**
43721760 TACCC-CTGATTTACAAAATTA-CAGAAA
1 TACCCTC-GATTTGTAAAATTACCA-AAA
43721787 TACCCT
1 TACCCT
43721793 TACTTTCTAA
Statistics
Matches: 142, Mismatches: 19, Indels: 13
0.82 0.11 0.07
Matches are distributed among these distances:
26 6 0.04
27 135 0.95
28 1 0.01
ACGTcount: A:0.41, C:0.23, G:0.08, T:0.29
Consensus pattern (27 bp):
TACCCTCGATTTGTAAAATTACCAAAA
Found at i:43721629 original size:54 final size:54
Alignment explanation
Indices: 43721459--43721635 Score: 178
Period size: 54 Copynumber: 3.3 Consensus size: 54
43721449 ACCAATTATT
* * * *
43721459 GAAATGCCCTCGATTTATAGAATTACTGTTTTACCCTCAATTTACAGAATTATC
1 GAAATACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTACC
*** * * *
43721513 GTTTTACCCTCGATTT-CTAGAATTACTATTTTACCCTCGATTTATAGAATTACT
1 GAAATACCCTCGATTTAC-AGAATTACTGTTTTACCCTCGATTTACAGAATTACC
*** * *
43721567 GTTTTACCCTTGATTTACAGAATTA-TCGTTTTACCCTCGATTTACAAAATTACC
1 GAAATACCCTCGATTTACAGAATTACT-GTTTTACCCTCGATTTACAGAATTACC
*
43721621 AAAATACCCTCGATT
1 GAAATACCCTCGATT
43721636 AGGAAAATTA
Statistics
Matches: 100, Mismatches: 20, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
53 1 0.01
54 98 0.98
55 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.10, T:0.40
Consensus pattern (54 bp):
GAAATACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTACC
Found at i:43721629 original size:81 final size:81
Alignment explanation
Indices: 43721460--43721635 Score: 264
Period size: 81 Copynumber: 2.2 Consensus size: 81
43721450 CCAATTATTG
*
43721460 AAATGCCCTCGATTTATAGAATTACTGTTTTACCCTCAATTTACAGAATTATCGTTTTACCCTCG
1 AAATACCCTCGATTTATAGAATTACTGTTTTACCCTCAATTTACAGAATTATCGTTTTACCCTCG
* *
43721525 ATTTCTAGAATTACTA
66 ATTTCTAAAATTACCA
*** **
43721541 TTTTACCCTCGATTTATAGAATTACTGTTTTACCCTTGATTTACAGAATTATCGTTTTACCCTCG
1 AAATACCCTCGATTTATAGAATTACTGTTTTACCCTCAATTTACAGAATTATCGTTTTACCCTCG
43721606 ATTTAC-AAAATTACCA
66 ATTT-CTAAAATTACCA
43721622 AAATACCCTCGATT
1 AAATACCCTCGATT
43721636 AGGAAAATTA
Statistics
Matches: 83, Mismatches: 11, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
81 82 0.99
82 1 0.01
ACGTcount: A:0.30, C:0.22, G:0.09, T:0.40
Consensus pattern (81 bp):
AAATACCCTCGATTTATAGAATTACTGTTTTACCCTCAATTTACAGAATTATCGTTTTACCCTCG
ATTTCTAAAATTACCA
Found at i:43721656 original size:81 final size:81
Alignment explanation
Indices: 43721498--43721656 Score: 178
Period size: 81 Copynumber: 2.0 Consensus size: 81
43721488 TTTACCCTCA
* * *** * *
43721498 ATTTACAGAATTATCGTTTTACCCTCGATTTCTAGAATTACTATTTTACCCTCGATTTATAGAAT
1 ATTTACAGAATTATCGTTTTACCCTCGATTTCTAAAATTACCAAAATACCCTCGATTTAGAAAAT
*****
43721563 TACTGTTTTACCCTTG
66 TACCAAAATACCCTTG
43721579 ATTTACAGAATTATCGTTTTACCCTCGATTTAC-AAAATTACCAAAATACCCTCGA-TTAGGAAA
1 ATTTACAGAATTATCGTTTTACCCTCGATTT-CTAAAATTACCAAAATACCCTCGATTTA-GAAA
43721642 ATTACCAAAATACCC
64 ATTACCAAAATACCC
43721657 CTAGTTTGTA
Statistics
Matches: 64, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
80 3 0.05
81 60 0.94
82 1 0.02
ACGTcount: A:0.33, C:0.21, G:0.09, T:0.37
Consensus pattern (81 bp):
ATTTACAGAATTATCGTTTTACCCTCGATTTCTAAAATTACCAAAATACCCTCGATTTAGAAAAT
TACCAAAATACCCTTG
Found at i:43721683 original size:81 final size:79
Alignment explanation
Indices: 43721598--43721792 Score: 232
Period size: 81 Copynumber: 2.4 Consensus size: 79
43721588 ATTATCGTTT
*
43721598 TACCCTCGATTTACAAAATTACCAAAATACCCTCGATTAG-GAAAATTACCAAAATACCCCTAGT
1 TACCC-CGATTTACAAAATTACCAAAATACCCT-GATTAGTG-AAATTACCAAAATACCCCTAAT
43721662 TTGTAAAATTACCAAAA
63 TTGTAAAATTACCAAAA
* ** * * * * *
43721679 TACCCCTATTTTGTAAAATTACCGAAATACCACTGGTTTGTGAAATTACCGAAATACCCTTAATT
1 TACCCCGA-TTTACAAAATTACCAAAATACC-CTGATTAGTGAAATTACCAAAATACCCCTAATT
43721744 TGTAAAATTACCAAAA
64 TGTAAAATTACCAAAA
43721760 TACCCCTGATTTACAAAATTA-CAGAAATACCCT
1 TACCCC-GATTTACAAAATTACCA-AAATACCCT
43721793 TACTTTCTAA
Statistics
Matches: 96, Mismatches: 13, Indels: 11
0.80 0.11 0.09
Matches are distributed among these distances:
80 5 0.05
81 87 0.91
82 4 0.04
ACGTcount: A:0.41, C:0.23, G:0.08, T:0.29
Consensus pattern (79 bp):
TACCCCGATTTACAAAATTACCAAAATACCCTGATTAGTGAAATTACCAAAATACCCCTAATTTG
TAAAATTACCAAAA
Found at i:43721793 original size:54 final size:54
Alignment explanation
Indices: 43721600--43721873 Score: 223
Period size: 54 Copynumber: 5.0 Consensus size: 54
43721590 TATCGTTTTA
** * *
43721600 CCCTCGATTTACAAAATTACCA-AAATACCCTCGATTAGGAAAATTACCAAAATAC
1 CCCT-GATTTACAAAATTA-CAGAAATACCCTTAATTTGTAAAATTACCAAAATAC
** * * *
43721655 CCCT-AGTTTGTAAAATTACCA-AAATACCCCTATTTTGTAAAATTACCGAAATAC
1 CCCTGA-TTTACAAAATTA-CAGAAATACCCTTAATTTGTAAAATTACCAAAATAC
* * *** *
43721709 CACTGGTTTGTGAAATTACCGAAATACCCTTAATTTGTAAAATTACCAAAATAC
1 CCCTGATTTACAAAATTACAGAAATACCCTTAATTTGTAAAATTACCAAAATAC
* * *
43721763 CCCTGATTTACAAAATTACAGAAATACCCTTACTTTCTAAAAATTA-TAGAAATAC
1 CCCTGATTTACAAAATTACAGAAATACCCTTAATTTGT-AAAATTACCA-AAATAC
** * * ** * * *
43721818 CATTGGTTTACAAAATTACTGAAATACCCTTGGTTTGTATATTTACCAAAACAC
1 CCCTGATTTACAAAATTACAGAAATACCCTTAATTTGTAAAATTACCAAAATAC
43721872 CC
1 CC
43721874 TTGCAGGATG
Statistics
Matches: 176, Mismatches: 37, Indels: 13
0.78 0.16 0.06
Matches are distributed among these distances:
53 2 0.01
54 125 0.71
55 49 0.28
ACGTcount: A:0.40, C:0.22, G:0.08, T:0.30
Consensus pattern (54 bp):
CCCTGATTTACAAAATTACAGAAATACCCTTAATTTGTAAAATTACCAAAATAC
Found at i:43721804 original size:27 final size:27
Alignment explanation
Indices: 43721639--43721856 Score: 167
Period size: 27 Copynumber: 8.0 Consensus size: 27
43721629 CTCGATTAGG
*
43721639 AAAATTACCA-AAATACCCCTAGTTTGT
1 AAAATTA-CAGAAATACCCTTAGTTTGT
* *
43721666 AAAATTACCA-AAATACCCCTATTTTGT
1 AAAATTA-CAGAAATACCCTTAGTTTGT
* *
43721693 AAAATTACCGAAATACCAC-TGGTTTGT
1 AAAATTACAGAAATACC-CTTAGTTTGT
* * *
43721720 GAAATTACCGAAATACCCTTAATTTGT
1 AAAATTACAGAAATACCCTTAGTTTGT
* **
43721747 AAAATTACCA-AAATACCCCT-GATTTAC
1 AAAATTA-CAGAAATACCCTTAG-TTTGT
* *
43721774 AAAATTACAGAAATACCCTTACTTTCT
1 AAAATTACAGAAATACCCTTAGTTTGT
* * * **
43721801 AAAAATTATAGAAATACCATTGGTTTAC
1 -AAAATTACAGAAATACCCTTAGTTTGT
* *
43721829 AAAATTACTGAAATACCCTTGGTTTGT
1 AAAATTACAGAAATACCCTTAGTTTGT
43721856 A
1 A
43721857 TATTTACCAA
Statistics
Matches: 155, Mismatches: 28, Indels: 16
0.78 0.14 0.08
Matches are distributed among these distances:
26 4 0.03
27 128 0.83
28 23 0.15
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.32
Consensus pattern (27 bp):
AAAATTACAGAAATACCCTTAGTTTGT
Found at i:43722817 original size:25 final size:24
Alignment explanation
Indices: 43722779--43722848 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 24
43722769 AGGAAGTGCT
*
43722779 AAAAGGGCTCTGCCCCAGTTTACC
1 AAAAGGGCTTTGCCCCAGTTTACC
*
43722803 GAAAAGGGCTTTGCCCCAGTTTATC
1 -AAAAGGGCTTTGCCCCAGTTTACC
*
43722828 AGAAAGGGCTTTGACCCAGTT
1 A-AAAGGGCTTTGCCCCAGTT
43722849 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
24 1 0.02
25 40 0.98
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.24
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTACC
Found at i:43722861 original size:24 final size:24
Alignment explanation
Indices: 43722779--43722861 Score: 87
Period size: 25 Copynumber: 3.4 Consensus size: 24
43722769 AGGAAGTGCT
* * *
43722779 AAAAGGGCTCTGCCCCAGTTTACC
1 AAAAGGGCTTTGACCCAGTTTATC
*
43722803 GAAAAGGGCTTTGCCCCAGTTTATC
1 -AAAAGGGCTTTGACCCAGTTTATC
*
43722828 AGAAAGGGCTTTGACCCAG-TTATT
1 A-AAAGGGCTTTGACCCAGTTTATC
43722852 AAAAGAGGCT
1 AAAAG-GGCT
43722862 AGGCCTCCAG
Statistics
Matches: 52, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
23 4 0.08
24 10 0.19
25 38 0.73
ACGTcount: A:0.29, C:0.23, G:0.24, T:0.24
Consensus pattern (24 bp):
AAAAGGGCTTTGACCCAGTTTATC
Found at i:43723043 original size:42 final size:42
Alignment explanation
Indices: 43722996--43723087 Score: 175
Period size: 42 Copynumber: 2.2 Consensus size: 42
43722986 TAGTCTCCCC
*
43722996 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCACTGACATTACATGTGATATTG
43723038 AAATGGGCTTGCATACATTCACTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCACTGACATTACATGTGATATTG
43723080 AAATGGGC
1 AAATGGGC
43723088 CTAAGGGCCA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 49 1.00
ACGTcount: A:0.32, C:0.15, G:0.21, T:0.33
Consensus pattern (42 bp):
AAATGGGCTTGCATACATTCACTGACATTACATGTGATATTG
Found at i:43723146 original size:31 final size:31
Alignment explanation
Indices: 43723111--43723194 Score: 161
Period size: 31 Copynumber: 2.7 Consensus size: 31
43723101 GGTTTACAGT
43723111 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
43723142 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
43723173 AAAGGCTTCGGCCCAGTG-TATG
1 AAAGGCTTCGGCCCAGTGATATG
43723195 TCAAGACTAA
Statistics
Matches: 53, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
30 4 0.08
31 49 0.92
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:43724125 original size:16 final size:16
Alignment explanation
Indices: 43724106--43724136 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
43724096 CTTCTTCACT
43724106 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
43724122 TACTTACTTACTTAA
1 TACTCACTTACTTAA
43724137 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:43724142 original size:20 final size:20
Alignment explanation
Indices: 43724103--43724142 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
43724093 AAACTTCTTC
* *
43724103 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
43724123 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
43724143 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:43724519 original size:55 final size:55
Alignment explanation
Indices: 43724329--43724583 Score: 253
Period size: 55 Copynumber: 4.8 Consensus size: 55
43724319 ACACGGGTAC
* * * *
43724329 CTTACCATTGCCATGACTTGTCATGGTCTTACGTGGTATCC-T---TT-T-GAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAAA
* * **
43724378 CTTACCATTGCCATGTCTCAACATGGTCTTACATGGTATCCTTGCCTTAT-G-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAAA
* * *
43724431 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCCTTATAGAAA
* ** *
43724486 CTTATCAATGCCATGTATTGACATGGTCTTACATGATATCCTTGCC-T-TAGAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAAA
* *
43724539 CCTTACCAATTTCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 -CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTATCCTT
43724584 AAATCCTAAT
Statistics
Matches: 170, Mismatches: 25, Indels: 16
0.81 0.12 0.08
Matches are distributed among these distances:
49 36 0.21
50 1 0.01
52 2 0.01
53 50 0.29
54 11 0.06
55 68 0.40
56 2 0.01
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (55 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAAA
Found at i:43724520 original size:108 final size:110
Alignment explanation
Indices: 43724374--43724576 Score: 304
Period size: 108 Copynumber: 1.9 Consensus size: 110
43724364 GTATCCTTTT
* * *
43724374 GAAACTTACCATTGCCATGTCTCAACATGGTCTTACATGGTATCCTTGCCTTATG-AA-CTCACC
1 GAAACTTACCAATGCCATGTATCAACATGGTCTTACATGATATCCTTGCCTTA-GAAACCTCACC
43724437 AA-TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATA
65 AATTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATA
* ** *
43724482 GAAACTTATCAATGCCATGTATTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTTACCA
1 GAAACTTACCAATGCCATGTATCAACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCA
*
43724547 ATTTCCATGCCTTGGCATGGTCTTACATGG
66 ATTGCCATGCCTTGGCATGGTCTTACATGG
43724577 TATCCTTAAA
Statistics
Matches: 84, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
107 1 0.01
108 49 0.58
109 7 0.08
110 27 0.32
ACGTcount: A:0.25, C:0.25, G:0.17, T:0.33
Consensus pattern (110 bp):
GAAACTTACCAATGCCATGTATCAACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCA
ATTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATA
Found at i:43732138 original size:27 final size:27
Alignment explanation
Indices: 43732101--43732305 Score: 223
Period size: 27 Copynumber: 7.6 Consensus size: 27
43732091 TAAATTGTAC
*
43732101 AGCACTAAGTGTGCGATTTGGCTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
43732128 AGCACTAAGTGTGCGATTTGACCATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** **
43732155 TGCACTAAGTGTGCGAAATGAAAATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
43732181 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
* *
43732209 GGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
43732236 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* * * *
43732264 GGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
43732291 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
43732306 GACTTAATAT
Statistics
Matches: 152, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
27 128 0.84
28 24 0.16
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:43732162 original size:54 final size:54
Alignment explanation
Indices: 43732102--43732305 Score: 257
Period size: 54 Copynumber: 3.8 Consensus size: 54
43732092 AAATTGTACA
* * *
43732102 GCACTAAGTGTGCGATTTGGCTATGTAGCACTAAGTGTGCGATTTGACCATGTT
1 GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGATTTGACCATGTG
** ** * *
43732156 GCACTAAGTGTGCGAAATGAAAATG-ATGCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAGTTGACTATGTA-GCACTAAGTGTGCGATTTGACCATGTG
**
43732210 GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGTG
1 GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGA-TTTGACCATGTG
* * *
43732265 GCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCG
43732306 GACTTAATAT
Statistics
Matches: 128, Mismatches: 19, Indels: 5
0.84 0.12 0.03
Matches are distributed among these distances:
53 1 0.01
54 80 0.62
55 47 0.37
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.29
Consensus pattern (54 bp):
GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGATTTGACCATGTG
Found at i:43734959 original size:12 final size:12
Alignment explanation
Indices: 43734942--43734971 Score: 53
Period size: 11 Copynumber: 2.6 Consensus size: 12
43734932 CTGAAGTCAA
43734942 AATATTTATTTT
1 AATATTTATTTT
43734954 AATA-TTATTTT
1 AATATTTATTTT
43734965 AATATTT
1 AATATTT
43734972 TGAGCATGAC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
11 11 0.65
12 6 0.35
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (12 bp):
AATATTTATTTT
Found at i:43740352 original size:31 final size:32
Alignment explanation
Indices: 43740314--43740378 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 32
43740304 CAGTATAATA
*
43740314 GGCCCACATGCCC-ATGGGACCTACCCGTGTG
1 GGCCCACACGCCCAATGGGACCTACCCGTGTG
* *
43740345 GGCCCACACGCCCAGATTGGCCCTACCCGTGTG
1 GGCCCACACGCCCA-ATGGGACCTACCCGTGTG
43740378 G
1 G
43740379 ATTACACAGC
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
31 12 0.41
33 17 0.59
ACGTcount: A:0.15, C:0.40, G:0.29, T:0.15
Consensus pattern (32 bp):
GGCCCACACGCCCAATGGGACCTACCCGTGTG
Found at i:43751716 original size:35 final size:35
Alignment explanation
Indices: 43751677--43751780 Score: 136
Period size: 35 Copynumber: 2.9 Consensus size: 35
43751667 TGGCTACATG
*
43751677 TGATGTTTTATTGAACTTGTATATTCGGCCATATA
1 TGATGATTTATTGAACTTGTATATTCGGCCATATA
* *
43751712 TGATGATTTATTGAACTTGTATATTCGGCAATATG
1 TGATGATTTATTGAACTTGTATATTCGGCCATATA
* * * *
43751747 TGATGATATAATGAACCTTGTGTATTTGGCCATA
1 TGATGATTTATTGAA-CTTGTATATTCGGCCATA
43751781 CAAGTAAGTA
Statistics
Matches: 60, Mismatches: 8, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
35 45 0.75
36 15 0.25
ACGTcount: A:0.28, C:0.11, G:0.19, T:0.42
Consensus pattern (35 bp):
TGATGATTTATTGAACTTGTATATTCGGCCATATA
Found at i:43756239 original size:24 final size:24
Alignment explanation
Indices: 43756207--43756255 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
43756197 ATTTACCACA
43756207 AAATTAATAAAATGTTTGTCAATT
1 AAATTAATAAAATGTTTGTCAATT
43756231 AAATTAATAAAATGTTTGTCAATT
1 AAATTAATAAAATGTTTGTCAATT
43756255 A
1 A
43756256 TCAAGTGTTG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.47, C:0.04, G:0.08, T:0.41
Consensus pattern (24 bp):
AAATTAATAAAATGTTTGTCAATT
Found at i:43757392 original size:21 final size:20
Alignment explanation
Indices: 43757368--43757407 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
43757358 TATGAGCTTT
43757368 AATGATTGATGATAGATTATG
1 AATGATTGATGATAG-TTATG
* *
43757389 AATGTTTGATTATAGTTAT
1 AATGATTGATGATAGTTAT
43757408 ACAAGTTTTG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.35, C:0.00, G:0.20, T:0.45
Consensus pattern (20 bp):
AATGATTGATGATAGTTATG
Found at i:43761452 original size:34 final size:35
Alignment explanation
Indices: 43761403--43761490 Score: 101
Period size: 34 Copynumber: 2.5 Consensus size: 35
43761393 AATATGCACA
*
43761403 TTCAAAATAACTTCACATAAAACCGAATATAT-AAG
1 TTCAATATAACTTCACATAAAACCGAATA-ATCAAG
** *
43761438 TTCAATATAA-TTCACATGTAATCGAATAATCAAG
1 TTCAATATAACTTCACATAAAACCGAATAATCAAG
43761472 TTCAATATAAGCTT-ACATA
1 TTCAATATAA-CTTCACATA
43761491 TACTTACCTA
Statistics
Matches: 45, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
33 2 0.04
34 28 0.62
35 13 0.29
36 2 0.04
ACGTcount: A:0.47, C:0.16, G:0.07, T:0.31
Consensus pattern (35 bp):
TTCAATATAACTTCACATAAAACCGAATAATCAAG
Found at i:43765935 original size:40 final size:40
Alignment explanation
Indices: 43765891--43766011 Score: 143
Period size: 40 Copynumber: 3.0 Consensus size: 40
43765881 TAAATTCCAA
* *
43765891 ATATAGCCAAAGCTATTCTAATTCACACACTAAGTGCTTT
1 ATATAGCCGAAGCTATACTAATTCACACACTAAGTGCTTT
** * *
43765931 ATATAATCGAAGCTATACTGATTCGCACACTAAGTGCTTT
1 ATATAGCCGAAGCTATACTAATTCACACACTAAGTGCTTT
** ** *
43765971 ATATAGCCGAAGCTATACCGATTGGCACACTAAGTGTTTT
1 ATATAGCCGAAGCTATACTAATTCACACACTAAGTGCTTT
43766011 A
1 A
43766012 CATAATCGAT
Statistics
Matches: 70, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 70 1.00
ACGTcount: A:0.33, C:0.21, G:0.15, T:0.31
Consensus pattern (40 bp):
ATATAGCCGAAGCTATACTAATTCACACACTAAGTGCTTT
Found at i:43767211 original size:19 final size:19
Alignment explanation
Indices: 43767189--43767225 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
43767179 TTGTAGGAGA
43767189 TTTGCACTTCGATGCCCTG
1 TTTGCACTTCGATGCCCTG
*
43767208 TTTGCACTTCGGTGCCCT
1 TTTGCACTTCGATGCCCT
43767226 TGTATACACT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.08, C:0.32, G:0.22, T:0.38
Consensus pattern (19 bp):
TTTGCACTTCGATGCCCTG
Found at i:43767237 original size:20 final size:19
Alignment explanation
Indices: 43767193--43767237 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
43767183 AGGAGATTTG
* *
43767193 CACTTCGATGCCCTGTTTG
1 CACTTCGATGCCCTGTATA
*
43767212 CACTTCGGTGCCCTTGTATA
1 CACTTCGATGCCC-TGTATA
43767232 CACTTC
1 CACTTC
43767238 CGTGTCTCTA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 12 0.55
20 10 0.45
ACGTcount: A:0.13, C:0.33, G:0.18, T:0.36
Consensus pattern (19 bp):
CACTTCGATGCCCTGTATA
Found at i:43768027 original size:20 final size:20
Alignment explanation
Indices: 43768002--43768039 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
43767992 AAGCTTATGC
*
43768002 TAAGTAAATGGAATGATTAG
1 TAAGTAAATGAAATGATTAG
43768022 TAAGTAAATGAAATGATT
1 TAAGTAAATGAAATGATT
43768040 CACCGTTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.47, C:0.00, G:0.21, T:0.32
Consensus pattern (20 bp):
TAAGTAAATGAAATGATTAG
Found at i:43782916 original size:64 final size:63
Alignment explanation
Indices: 43782836--43783019 Score: 181
Period size: 67 Copynumber: 2.8 Consensus size: 63
43782826 AGACATTATG
* * *
43782836 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTAAACCATGTAAACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA-GTGTAAACCATGTAAACAAGAGAGCTACGAGATAA
* * * * *
43782900 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA-GTGTA--A-ACCATGTAAACAAGAGAGCTACGAGAT
43782965 AA
62 AA
* * ** **
43782967 AT-TGGCTAGGTCACATGGGTGGTACTGAGTGTTCACCATGTGTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-AGTGTAAACCATGTAAACAAGAGAGC
43783020 CGAACTCTAT
Statistics
Matches: 97, Mismatches: 19, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
63 17 0.18
64 28 0.29
66 23 0.24
67 29 0.30
ACGTcount: A:0.30, C:0.16, G:0.30, T:0.23
Consensus pattern (63 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTAGTGTAAACCATGTAAACAAGAGAGCTACGAGATAA
Found at i:43786467 original size:28 final size:29
Alignment explanation
Indices: 43786399--43786478 Score: 101
Period size: 29 Copynumber: 2.8 Consensus size: 29
43786389 TGAATGTGAC
*
43786399 TGGGCCTAACGGGCCATATACAGATGATT
1 TGGGCCTAATGGGCCATATACAGATGATT
*
43786428 TGGGCCTAATGGGCCATATTA-ATATGA-T
1 TGGGCCTAATGGGCCATA-TACAGATGATT
* *
43786456 TGGGCTTAATGGGCCAGATACAG
1 TGGGCCTAATGGGCCATATACAG
43786479 GTATGTGAAA
Statistics
Matches: 44, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.05
28 18 0.41
29 22 0.50
30 2 0.05
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.26
Consensus pattern (29 bp):
TGGGCCTAATGGGCCATATACAGATGATT
Found at i:43790228 original size:47 final size:47
Alignment explanation
Indices: 43790171--43790476 Score: 378
Period size: 47 Copynumber: 6.4 Consensus size: 47
43790161 ATTGATGTAC
* * * *
43790171 AAGTATATATATGTGATAGGGTCGAGTGGCCAACGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAACGTGATGAATGTGA
* * *
43790218 AAGTATATATATATATGTGATAGGGCCGAGTGGCCAACGTGATGAATGTGA
1 AAG----TGTATATATGTGATAAGGCCGAATGGCCAACGTGATGAATGTGA
* * * *
43790269 AAGTGTATATATGTGATAGGGTCGAGTGACCAACGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAACGTGATGAATGTGA
* *
43790316 AAGTGTATATATGTGATAAGGCCGAATGACCAATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAACGTGATGAATGTGA
* * * * *
43790363 AAGTGTATATATGAGATAAGACCTAATGGCCAATGTAATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAACGTGATGAATGTGA
* *
43790410 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAACGTGATGAATGTGA
* *
43790457 AAGTGCATAAATGTGATAAG
1 AAGTGTATATATGTGATAAG
43790477 TCCCGAAGGG
Statistics
Matches: 235, Mismatches: 20, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
47 189 0.80
51 46 0.20
ACGTcount: A:0.35, C:0.08, G:0.29, T:0.27
Consensus pattern (47 bp):
AAGTGTATATATGTGATAAGGCCGAATGGCCAACGTGATGAATGTGA
Found at i:43797158 original size:14 final size:14
Alignment explanation
Indices: 43797139--43797166 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
43797129 TAGGTTTAGA
43797139 GTTGGCCATCGTCT
1 GTTGGCCATCGTCT
43797153 GTTGGCCATCGTCT
1 GTTGGCCATCGTCT
43797167 ATTGACCTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.07, C:0.29, G:0.29, T:0.36
Consensus pattern (14 bp):
GTTGGCCATCGTCT
Found at i:43797596 original size:23 final size:23
Alignment explanation
Indices: 43797569--43797614 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
43797559 AGGAAAAACA
43797569 TAACTAAATTGCTTTTATACGAG
1 TAACTAAATTGCTTTTATACGAG
43797592 TAACTAAATTGCTTTTATACGAG
1 TAACTAAATTGCTTTTATACGAG
43797615 CTCTTTAAGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.39
Consensus pattern (23 bp):
TAACTAAATTGCTTTTATACGAG
Found at i:43802792 original size:30 final size:30
Alignment explanation
Indices: 43802731--43802800 Score: 79
Period size: 30 Copynumber: 2.3 Consensus size: 30
43802721 GTTCACATCC
* **
43802731 AGCTCAATTCCAGCTCATGAGCTTGTTCTT
1 AGCTCAATTCCAGCTCATGAGCTCGGACTT
*
43802761 AGCTCAACTT-CAGCTCCTGAGCTCGGACTT
1 AGCTCAA-TTCCAGCTCATGAGCTCGGACTT
43802791 AGCTCGAATT
1 AGCTC-AATT
43802801 TAGCTCACGA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
30 30 0.88
31 4 0.12
ACGTcount: A:0.21, C:0.29, G:0.19, T:0.31
Consensus pattern (30 bp):
AGCTCAATTCCAGCTCATGAGCTCGGACTT
Found at i:43809654 original size:20 final size:20
Alignment explanation
Indices: 43809631--43809688 Score: 71
Period size: 20 Copynumber: 2.9 Consensus size: 20
43809621 TAGCTTGTCC
*
43809631 AGCTCACAACCAGCTCAACA
1 AGCTCACATCCAGCTCAACA
** *
43809651 AGCTCAGTTCTAGCTCAACA
1 AGCTCACATCCAGCTCAACA
*
43809671 AGTTCACATCCAGCTCAA
1 AGCTCACATCCAGCTCAA
43809689 TTCTAGCTCA
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.34, C:0.34, G:0.12, T:0.19
Consensus pattern (20 bp):
AGCTCACATCCAGCTCAACA
Found at i:43812847 original size:8 final size:8
Alignment explanation
Indices: 43812836--43812861 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
43812826 AGAGAGGGAG
43812836 AGGGGGTT
1 AGGGGGTT
43812844 AGGGGGTT
1 AGGGGGTT
43812852 AGGGGGTT
1 AGGGGGTT
43812860 AG
1 AG
43812862 AGAAGGCTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.15, C:0.00, G:0.62, T:0.23
Consensus pattern (8 bp):
AGGGGGTT
Found at i:43813080 original size:43 final size:43
Alignment explanation
Indices: 43813033--43813154 Score: 154
Period size: 43 Copynumber: 2.8 Consensus size: 43
43813023 CATTTATTTA
* * * *
43813033 AAAAAAAGTCGCTAAAGACCATGACCTTTAGCGGCGCTTCTTC
1 AAAAAACGCCGCTAAAGACCATGACCTTTAGCAGCGCTTCTCC
* *
43813076 AAAAAACGCCACTAAAGACCATGGCCTTTAGCAGCGCTTCTCC
1 AAAAAACGCCGCTAAAGACCATGACCTTTAGCAGCGCTTCTCC
* * * *
43813119 CAAAAACGCCGCTAAAGACCATAACTTTTAGTAGCG
1 AAAAAACGCCGCTAAAGACCATGACCTTTAGCAGCG
43813155 TTTTTTTTGC
Statistics
Matches: 67, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 67 1.00
ACGTcount: A:0.34, C:0.28, G:0.17, T:0.20
Consensus pattern (43 bp):
AAAAAACGCCGCTAAAGACCATGACCTTTAGCAGCGCTTCTCC
Found at i:43813249 original size:17 final size:17
Alignment explanation
Indices: 43813217--43813263 Score: 53
Period size: 16 Copynumber: 2.9 Consensus size: 17
43813207 AAACGCCGCT
*
43813217 AAAAAATATA-AATTTA
1 AAAAAATATATATTTTA
43813233 AAAAAATATATATTTTA
1 AAAAAATATATATTTTA
**
43813250 ATTAAATA-ATATTT
1 AAAAAATATATATTT
43813264 ATTTTCTATG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
16 16 0.59
17 11 0.41
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (17 bp):
AAAAAATATATATTTTA
Found at i:43818033 original size:22 final size:22
Alignment explanation
Indices: 43818002--43818054 Score: 63
Period size: 22 Copynumber: 2.4 Consensus size: 22
43817992 ACAAACGCCA
* *
43818002 CTATTATTTAATTTTAATTTTTT
1 CTATTTTTTAA-TATAATTTTTT
*
43818025 -TATTTTTTAATATATTTTTTT
1 CTATTTTTTAATATAATTTTTT
43818046 CTATTTTTT
1 CTATTTTTT
43818055 CTTTCAAAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
21 9 0.35
22 17 0.65
ACGTcount: A:0.23, C:0.04, G:0.00, T:0.74
Consensus pattern (22 bp):
CTATTTTTTAATATAATTTTTT
Found at i:43818174 original size:15 final size:14
Alignment explanation
Indices: 43818152--43818197 Score: 53
Period size: 14 Copynumber: 3.5 Consensus size: 14
43818142 ATATTAAATG
*
43818152 TTAATTTTTAATTT
1 TTAAATTTTAATTT
43818166 TTAAATTTTAATTT
1 TTAAATTTTAATTT
*
43818180 TT---TTATAATTT
1 TTAAATTTTAATTT
43818191 TTAAATT
1 TTAAATT
43818198 ATCATATAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
11 10 0.37
14 17 0.63
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (14 bp):
TTAAATTTTAATTT
Found at i:43818191 original size:8 final size:7
Alignment explanation
Indices: 43818152--43818181 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
43818142 ATATTAAATG
43818152 TTAATTT
1 TTAATTT
43818159 TTAATTT
1 TTAATTT
*
43818166 TTAAATT
1 TTAATTT
43818173 TTAATTT
1 TTAATTT
43818180 TT
1 TT
43818182 TTATAATTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (7 bp):
TTAATTT
Found at i:43819779 original size:41 final size:40
Alignment explanation
Indices: 43819660--43819838 Score: 164
Period size: 41 Copynumber: 4.4 Consensus size: 40
43819650 AAATTTTTTT
* * * * * *
43819660 GCGGCGTTTTTTGAAAAGCGCAGCTAAAGGT-GTACTTATA
1 GCGGCTTTTTTTAAAAAGCGCCGCTAATGCTCGTTCTT-TA
* * ** **
43819700 GCGGCGTTTTTAAAAAAGCGCCGCTAATAATCAATCTTTA
1 GCGGCTTTTTTTAAAAAGCGCCGCTAATGCTCGTTCTTTA
*
43819740 GCGGCATTTTTTTGAAAAGCGCCGCTAATGCTCGTTCTTTA
1 GCGGC-TTTTTTTAAAAAGCGCCGCTAATGCTCGTTCTTTA
* * *
43819781 GCGGC-GTTTTCAAAAAGTGCCGCTAATGCTCGTTCTTTA
1 GCGGCTTTTTTTAAAAAGCGCCGCTAATGCTCGTTCTTTA
43819820 GCGGCGTTTTTATTAAAAA
1 GCGGC-TTTTT-TTAAAAA
43819839 ACATCGCTAA
Statistics
Matches: 112, Mismatches: 22, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
39 35 0.31
40 32 0.29
41 39 0.35
42 6 0.05
ACGTcount: A:0.26, C:0.19, G:0.22, T:0.33
Consensus pattern (40 bp):
GCGGCTTTTTTTAAAAAGCGCCGCTAATGCTCGTTCTTTA
Found at i:43819808 original size:39 final size:39
Alignment explanation
Indices: 43819698--43819829 Score: 156
Period size: 39 Copynumber: 3.3 Consensus size: 39
43819688 GGTGTACTTA
** **
43819698 TAGCGGCGTTTTTAAAAAAGCGCCGCTAATAATCAATCTT
1 TAGCGGCG-TTTTAAAAAAGCGCCGCTAATGCTCGTTCTT
* **
43819738 TAGCGGCATTTTTTTGAAAAGCGCCGCTAATGCTCGTTCTT
1 TAGCGGC--GTTTTAAAAAAGCGCCGCTAATGCTCGTTCTT
* *
43819779 TAGCGGCGTTTTCAAAAAGTGCCGCTAATGCTCGTTCTT
1 TAGCGGCGTTTTAAAAAAGCGCCGCTAATGCTCGTTCTT
43819818 TAGCGGCGTTTT
1 TAGCGGCGTTTT
43819830 TATTAAAAAA
Statistics
Matches: 79, Mismatches: 11, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
39 40 0.51
40 7 0.09
41 32 0.41
ACGTcount: A:0.23, C:0.21, G:0.22, T:0.34
Consensus pattern (39 bp):
TAGCGGCGTTTTAAAAAAGCGCCGCTAATGCTCGTTCTT
Found at i:43819818 original size:80 final size:81
Alignment explanation
Indices: 43819666--43819830 Score: 208
Period size: 80 Copynumber: 2.0 Consensus size: 81
43819656 TTTTGCGGCG
*
43819666 TTTTTTGAAAAGCGCAGCTAAAGGTGTACTTATAGCGGCGTTTTTAAAAAAGCGCCGCTAATAAT
1 TTTTTTGAAAAGCGCAGCTAAAGCTGTACTTATAGCGGCGTTTTTAAAAAAGCGCCGCTAATAAT
43819731 CAATCTTTAGCGGCAT
66 CAATCTTTAGCGGCAT
* * * * * **
43819747 TTTTTTGAAAAGCGCCGCTAATGCTCGTTCTT-TAGCGGCG-TTTTCAAAAAGTGCCGCTAATGC
1 TTTTTTGAAAAGCGCAGCTAAAGCT-GTACTTATAGCGGCGTTTTTAAAAAAGCGCCGCTAATAA
** *
43819810 TCGTTCTTTAGCGGCGT
65 TCAATCTTTAGCGGCAT
43819827 TTTT
1 TTTT
43819831 ATTAAAAAAC
Statistics
Matches: 72, Mismatches: 11, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
80 37 0.51
81 30 0.42
82 5 0.07
ACGTcount: A:0.24, C:0.19, G:0.22, T:0.35
Consensus pattern (81 bp):
TTTTTTGAAAAGCGCAGCTAAAGCTGTACTTATAGCGGCGTTTTTAAAAAAGCGCCGCTAATAAT
CAATCTTTAGCGGCAT
Found at i:43821666 original size:23 final size:23
Alignment explanation
Indices: 43821640--43821716 Score: 64
Period size: 23 Copynumber: 3.2 Consensus size: 23
43821630 TTAAATAATA
*
43821640 TATTTTGAATAAATTTCTACATT
1 TATTTTGAATAAATTTATACATT
* *
43821663 TATTTATTAGCAAAAAAATTATACATT
1 TA-TT-TT-G-AATAAATTTATACATT
* * *
43821690 TATTTTAAATAAATTTATTCTTT
1 TATTTTGAATAAATTTATACATT
43821713 TATT
1 TATT
43821717 AAATAGTATA
Statistics
Matches: 42, Mismatches: 8, Indels: 8
0.72 0.14 0.14
Matches are distributed among these distances:
23 18 0.43
24 2 0.05
25 4 0.10
26 3 0.07
27 15 0.36
ACGTcount: A:0.39, C:0.06, G:0.03, T:0.52
Consensus pattern (23 bp):
TATTTTGAATAAATTTATACATT
Found at i:43824228 original size:32 final size:32
Alignment explanation
Indices: 43824192--43824255 Score: 119
Period size: 32 Copynumber: 2.0 Consensus size: 32
43824182 GCCCATGCCT
*
43824192 AAATTTTAGAATTTGTTGATGATTTTGTGATA
1 AAATTTCAGAATTTGTTGATGATTTTGTGATA
43824224 AAATTTCAGAATTTGTTGATGATTTTGTGATA
1 AAATTTCAGAATTTGTTGATGATTTTGTGATA
43824256 TTCCATTGTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.31, C:0.02, G:0.19, T:0.48
Consensus pattern (32 bp):
AAATTTCAGAATTTGTTGATGATTTTGTGATA
Found at i:43825025 original size:43 final size:43
Alignment explanation
Indices: 43824888--43825056 Score: 191
Period size: 43 Copynumber: 3.9 Consensus size: 43
43824878 AGGAATTCCG
* * *
43824888 TATTTGATTTCGTATAAGACCACATCTGGGACATTGGCATCAA
1 TATTTGATTTCATGTAAGACCACATCTGGGACATTGGCATCGA
* * *
43824931 T-TTTAGATTTACGTGTAAGACCACGTCTGGGACATCGGCATCG-
1 TATTT-GATTT-CATGTAAGACCACATCTGGGACATTGGCATCGA
* * *
43824974 TAATTGATTTCATGTAAGACC-CTATCTGGGACAGTGGCATTGA
1 TATTTGATTTCATGTAAGACCAC-ATCTGGGACATTGGCATCGA
* *
43825017 TATTTGATTACATGTAAGACCACATCTGGGACTTTGGCAT
1 TATTTGATTTCATGTAAGACCACATCTGGGACATTGGCAT
43825057 TGTACGAGCT
Statistics
Matches: 106, Mismatches: 14, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
41 1 0.01
42 28 0.26
43 46 0.43
44 31 0.29
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.33
Consensus pattern (43 bp):
TATTTGATTTCATGTAAGACCACATCTGGGACATTGGCATCGA
Found at i:43826095 original size:29 final size:29
Alignment explanation
Indices: 43826059--43826122 Score: 119
Period size: 29 Copynumber: 2.2 Consensus size: 29
43826049 GTCTATTGGC
43826059 CGTGTGTGGTACACGGGCTGACACATGGG
1 CGTGTGTGGTACACGGGCTGACACATGGG
*
43826088 CGTGTGTGGTACACGGGCTGGCACATGGG
1 CGTGTGTGGTACACGGGCTGACACATGGG
43826117 CGTGTG
1 CGTGTG
43826123 GTCAGCCGTG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.14, C:0.20, G:0.44, T:0.22
Consensus pattern (29 bp):
CGTGTGTGGTACACGGGCTGACACATGGG
Found at i:43826313 original size:41 final size:41
Alignment explanation
Indices: 43826236--43826314 Score: 122
Period size: 41 Copynumber: 1.9 Consensus size: 41
43826226 CTAGAAACAA
**
43826236 GGGCATGTCTAATGCCGTGTGGGCACACGGTTTATTCATAC
1 GGGCATGTCTAATGCCGTGTGGGCACACGGCCTATTCATAC
* *
43826277 GGGCGTGTCTAATGCCGTGTGGGCACATGGCCTATTCA
1 GGGCATGTCTAATGCCGTGTGGGCACACGGCCTATTCA
43826315 CCCAGGCGTG
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 34 1.00
ACGTcount: A:0.18, C:0.23, G:0.32, T:0.28
Consensus pattern (41 bp):
GGGCATGTCTAATGCCGTGTGGGCACACGGCCTATTCATAC
Found at i:43826323 original size:41 final size:41
Alignment explanation
Indices: 43826241--43826325 Score: 116
Period size: 41 Copynumber: 2.1 Consensus size: 41
43826231 AACAAGGGCA
** * *
43826241 TGTCTAATGCCGTGTGGGCACACGGTTTATTCATACGGGCG
1 TGTCTAATGCCGTGTGGGCACACGGCCTATTCACACAGGCG
* *
43826282 TGTCTAATGCCGTGTGGGCACATGGCCTATTCACCCAGGCG
1 TGTCTAATGCCGTGTGGGCACACGGCCTATTCACACAGGCG
43826323 TGT
1 TGT
43826326 GACCTTTGTA
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.16, C:0.25, G:0.31, T:0.28
Consensus pattern (41 bp):
TGTCTAATGCCGTGTGGGCACACGGCCTATTCACACAGGCG
Found at i:43829352 original size:12 final size:12
Alignment explanation
Indices: 43829335--43829359 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
43829325 ATTTTATAAC
43829335 ATAAATATTGTT
1 ATAAATATTGTT
43829347 ATAAATATTGTT
1 ATAAATATTGTT
43829359 A
1 A
43829360 ATAGCCTCTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (12 bp):
ATAAATATTGTT
Found at i:43831356 original size:16 final size:16
Alignment explanation
Indices: 43831314--43831360 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
43831304 TTTTTATTTA
*
43831314 TTTATTTTAAATTTA-
1 TTTATTTTAAATTGAT
43831329 TTT-TTTT--A-TGAT
1 TTTATTTTAAATTGAT
43831341 TTTATTTTAAATTGAT
1 TTTATTTTAAATTGAT
43831357 TTTA
1 TTTA
43831361 AATTTTAATT
Statistics
Matches: 26, Mismatches: 1, Indels: 9
0.72 0.03 0.25
Matches are distributed among these distances:
11 2 0.08
12 4 0.15
13 4 0.15
14 4 0.15
15 4 0.15
16 8 0.31
ACGTcount: A:0.28, C:0.00, G:0.04, T:0.68
Consensus pattern (16 bp):
TTTATTTTAAATTGAT
Found at i:43834946 original size:31 final size:31
Alignment explanation
Indices: 43834872--43834947 Score: 107
Period size: 31 Copynumber: 2.5 Consensus size: 31
43834862 ACCTCAGGCT
* *
43834872 ACATTTTAGTTAATTACGTTATCGCATTGTA
1 ACATTTTAGTCACTTACGTTATCGCATTGTA
* * *
43834903 ATATTTTAGTCACTTGCGTTATCGCATTTTA
1 ACATTTTAGTCACTTACGTTATCGCATTGTA
43834934 ACATTTTAGTCACT
1 ACATTTTAGTCACT
43834948 GAATTTTTAA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 39 1.00
ACGTcount: A:0.26, C:0.16, G:0.12, T:0.46
Consensus pattern (31 bp):
ACATTTTAGTCACTTACGTTATCGCATTGTA
Found at i:43838720 original size:43 final size:43
Alignment explanation
Indices: 43838672--43838757 Score: 163
Period size: 43 Copynumber: 2.0 Consensus size: 43
43838662 TAAGCCGAAA
43838672 TACATTGAGCATCTTAGTCATAGGAGACCTTCACTCCTAATGG
1 TACATTGAGCATCTTAGTCATAGGAGACCTTCACTCCTAATGG
*
43838715 TACATTGAGCATCTTGGTCATAGGAGACCTTCACTCCTAATGG
1 TACATTGAGCATCTTAGTCATAGGAGACCTTCACTCCTAATGG
43838758 CAACGTTGCA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (43 bp):
TACATTGAGCATCTTAGTCATAGGAGACCTTCACTCCTAATGG
Found at i:43840395 original size:6 final size:6
Alignment explanation
Indices: 43840384--43840444 Score: 68
Period size: 6 Copynumber: 10.0 Consensus size: 6
43840374 CACACACAGC
* * * *
43840384 CAGATA CAGATA CAGATA CAGATT CAGATT CAGATT CAGATT CAGATAA
1 CAGATA CAGATA CAGATA CAGATA CAGATA CAGATA CAGATA CAGAT-A
*
43840433 CAGAAA CAGATA
1 CAGATA CAGATA
43840445 TGCAAAATCC
Statistics
Matches: 50, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
6 46 0.92
7 4 0.08
ACGTcount: A:0.46, C:0.16, G:0.16, T:0.21
Consensus pattern (6 bp):
CAGATA
Found at i:43848489 original size:14 final size:14
Alignment explanation
Indices: 43848472--43848513 Score: 75
Period size: 14 Copynumber: 3.0 Consensus size: 14
43848462 TACAAAGGAA
43848472 TATATATATATATG
1 TATATATATATATG
*
43848486 TATATATATATGTG
1 TATATATATATATG
43848500 TATATATATATATG
1 TATATATATATATG
43848514 AATAACAATC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
14 26 1.00
ACGTcount: A:0.40, C:0.00, G:0.10, T:0.50
Consensus pattern (14 bp):
TATATATATATATG
Found at i:43848529 original size:2 final size:2
Alignment explanation
Indices: 43848471--43848512 Score: 57
Period size: 2 Copynumber: 21.0 Consensus size: 2
43848461 ATACAAAGGA
* * *
43848471 AT AT AT AT AT AT AT GT AT AT AT AT AT GT GT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
43848513 GAATAACAAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.43, C:0.00, G:0.07, T:0.50
Consensus pattern (2 bp):
AT
Found at i:43849557 original size:6 final size:6
Alignment explanation
Indices: 43849548--43849600 Score: 53
Period size: 6 Copynumber: 9.7 Consensus size: 6
43849538 TATATATATA
* *
43849548 AAAATC AAAATC AAAAT- AAAA-G AAAATC AAAAT- AAAA-G AAAATC
1 AAAATC AAAATC AAAATC AAAATC AAAATC AAAATC AAAATC AAAATC
43849592 AAAAT- AAAA
1 AAAATC AAAA
43849601 GAAACTAGAT
Statistics
Matches: 41, Mismatches: 2, Indels: 9
0.79 0.04 0.17
Matches are distributed among these distances:
5 20 0.49
6 21 0.51
ACGTcount: A:0.75, C:0.08, G:0.04, T:0.13
Consensus pattern (6 bp):
AAAATC
Found at i:43849575 original size:16 final size:16
Alignment explanation
Indices: 43849554--43849604 Score: 102
Period size: 16 Copynumber: 3.2 Consensus size: 16
43849544 TATAAAAATC
43849554 AAAATCAAAATAAAAG
1 AAAATCAAAATAAAAG
43849570 AAAATCAAAATAAAAG
1 AAAATCAAAATAAAAG
43849586 AAAATCAAAATAAAAG
1 AAAATCAAAATAAAAG
43849602 AAA
1 AAA
43849605 CTAGATGAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 35 1.00
ACGTcount: A:0.76, C:0.06, G:0.06, T:0.12
Consensus pattern (16 bp):
AAAATCAAAATAAAAG
Found at i:43849596 original size:22 final size:21
Alignment explanation
Indices: 43849548--43849589 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 21
43849538 TATATATATA
*
43849548 AAAATCAAAATCAAAATAAAAG
1 AAAATCAAAAT-AAAAGAAAAG
43849570 AAAATCAAAATAAAAGAAAA
1 AAAATCAAAATAAAAGAAAA
43849590 TCAAAATAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 8 0.42
22 11 0.58
ACGTcount: A:0.76, C:0.07, G:0.05, T:0.12
Consensus pattern (21 bp):
AAAATCAAAATAAAAGAAAAG
Found at i:43851782 original size:21 final size:21
Alignment explanation
Indices: 43851727--43851784 Score: 82
Period size: 21 Copynumber: 2.8 Consensus size: 21
43851717 CTCCAAAACA
*
43851727 AGGGAAAATGGGC-TACAATTT
1 AGGGAAAAT-GTCTTACAATTT
*
43851748 AGGGAAAATATCTTACAATTT
1 AGGGAAAATGTCTTACAATTT
43851769 AGGGAAAATGTCTTAC
1 AGGGAAAATGTCTTAC
43851785 CCTTTCAATT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
20 1 0.03
21 32 0.97
ACGTcount: A:0.40, C:0.10, G:0.22, T:0.28
Consensus pattern (21 bp):
AGGGAAAATGTCTTACAATTT
Found at i:43852223 original size:34 final size:35
Alignment explanation
Indices: 43852166--43852232 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
43852156 CAAACACCAG
*
43852166 AAAATATTTTCTAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCTAGTAAATCATTTTACAGAAAAGT
*
43852201 AAAACATTTTCTAG-AAATCATTTTACGGAAAA
1 AAAACATTTTCTAGTAAATCATTTTACAGAAAA
43852233 TATTTTACTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.46, C:0.10, G:0.09, T:0.34
Consensus pattern (35 bp):
AAAACATTTTCTAGTAAATCATTTTACAGAAAAGT
Found at i:43853034 original size:29 final size:26
Alignment explanation
Indices: 43853001--43853053 Score: 70
Period size: 29 Copynumber: 1.9 Consensus size: 26
43852991 ATAAAAAATA
43853001 AAAATCATAAAATATTAATAAATTATTTT
1 AAAATCATAAAA-A-TAA-AAATTATTTT
*
43853030 AAAATTATAAAAATAAAAATTATT
1 AAAATCATAAAAATAAAAATTATT
43853054 AATAATTTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
26 8 0.35
27 3 0.13
28 1 0.04
29 11 0.48
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (26 bp):
AAAATCATAAAAATAAAAATTATTTT
Found at i:43853040 original size:8 final size:8
Alignment explanation
Indices: 43853029--43853084 Score: 60
Period size: 8 Copynumber: 6.6 Consensus size: 8
43853019 TAAATTATTT
43853029 TAAAATTA
1 TAAAATTA
*
43853037 TAAAAATA
1 TAAAATTA
43853045 -AAAATTA
1 TAAAATTA
43853052 TTAATAATTTA
1 -TAA-AA-TTA
43853063 TAAAATTA
1 TAAAATTA
43853071 TAAAATTAA
1 TAAAATT-A
43853080 TAAAA
1 TAAAA
43853085 ATGCACCTTT
Statistics
Matches: 41, Mismatches: 2, Indels: 9
0.79 0.04 0.17
Matches are distributed among these distances:
7 6 0.15
8 17 0.41
9 10 0.24
10 5 0.12
11 3 0.07
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (8 bp):
TAAAATTA
Found at i:43853067 original size:19 final size:17
Alignment explanation
Indices: 43853029--43853084 Score: 62
Period size: 17 Copynumber: 3.3 Consensus size: 17
43853019 TAAATTATTT
*
43853029 TAAAATTATAAAAAT-A
1 TAAAATTATAAAATTAA
*
43853045 -AAAATTATTAATAATTTA
1 TAAAATTA-TAA-AATTAA
43853063 TAAAATTATAAAATTAA
1 TAAAATTATAAAATTAA
43853080 TAAAA
1 TAAAA
43853085 ATGCACCTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
15 7 0.21
16 3 0.09
17 13 0.38
18 4 0.12
19 7 0.21
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (17 bp):
TAAAATTATAAAATTAA
Found at i:43853071 original size:34 final size:38
Alignment explanation
Indices: 43852988--43853084 Score: 107
Period size: 34 Copynumber: 2.7 Consensus size: 38
43852978 TGAGTTCAAA
*
43852988 ATTATAAAA-AATAAAAATCATAAAATATTAATAAATT
1 ATTATAAAATTATAAAAATCATAAAATATTAATAAATT
*
43853025 ATTTTAAAATTATAAAAAT-A-AAAATTATTAAT-AA-T
1 ATTATAAAATTATAAAAATCATAAAA-TATTAATAAATT
* *
43853060 -TTATAAAATTATAAAATTAATAAAA
1 ATTATAAAATTATAAAAATCATAAAA
43853085 ATGCACCTTT
Statistics
Matches: 52, Mismatches: 4, Indels: 9
0.80 0.06 0.14
Matches are distributed among these distances:
34 16 0.31
35 2 0.04
36 10 0.19
37 16 0.31
38 8 0.15
ACGTcount: A:0.63, C:0.01, G:0.00, T:0.36
Consensus pattern (38 bp):
ATTATAAAATTATAAAAATCATAAAATATTAATAAATT
Found at i:43853201 original size:18 final size:18
Alignment explanation
Indices: 43853180--43853254 Score: 59
Period size: 16 Copynumber: 4.3 Consensus size: 18
43853170 AGTGCAAAAC
*
43853180 TATAAAAATTTTATAAAT
1 TATAAAAAATTTATAAAT
***
43853198 TATAAAAAAACAAT-AAT
1 TATAAAAAATTTATAAAT
* *
43853215 T-TAAAAAATATATACA-
1 TATAAAAAATTTATAAAT
43853231 TAT-AAAAATCTTATAAAT
1 TATAAAAAAT-TTATAAAT
43853249 TATAAA
1 TATAAA
43853255 CTCATTTCAC
Statistics
Matches: 42, Mismatches: 10, Indels: 9
0.69 0.16 0.15
Matches are distributed among these distances:
16 16 0.38
17 11 0.26
18 13 0.31
19 2 0.05
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.35
Consensus pattern (18 bp):
TATAAAAAATTTATAAAT
Found at i:43853397 original size:20 final size:21
Alignment explanation
Indices: 43853372--43853411 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
43853362 TTATTTTTTA
*
43853372 AATTTTTTGTGTC-ATATTTG
1 AATTTTTTATGTCAATATTTG
43853392 AATTTTTTATGTCAATATTT
1 AATTTTTTATGTCAATATTT
43853412 TTATTTTTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.25, C:0.05, G:0.10, T:0.60
Consensus pattern (21 bp):
AATTTTTTATGTCAATATTTG
Found at i:43854496 original size:4 final size:4
Alignment explanation
Indices: 43854487--43854513 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
43854477 TTAGATTTCA
43854487 AAAT AAAT AAAT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAA
43854514 ATCTGACATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (4 bp):
AAAT
Found at i:43859414 original size:25 final size:27
Alignment explanation
Indices: 43859377--43859429 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
43859367 TCAAACATGC
43859377 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
43859403 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
43859429 A
1 A
43859430 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:43860946 original size:26 final size:26
Alignment explanation
Indices: 43860915--43861022 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
43860905 TGAAATGCCC
*
43860915 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
43860941 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
43860967 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
43860993 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
43861019 ATCA
1 ATCA
43861023 ATTTGTACCA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.37, C:0.24, G:0.06, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:43866380 original size:25 final size:27
Alignment explanation
Indices: 43866343--43866395 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
43866333 TCAAACATGC
43866343 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
43866369 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
43866395 A
1 A
43866396 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:43867911 original size:26 final size:25
Alignment explanation
Indices: 43867875--43868022 Score: 189
Period size: 26 Copynumber: 6.0 Consensus size: 25
43867865 AATGCCCATC
43867875 TGGAACATTTACCTAAACCATTATCA
1 TGGAACATTTACCT-AACCATTATCA
*
43867901 TGGAACATTTATCTAACCATTATCA
1 TGGAACATTTACCTAACCATTATCA
* *
43867926 TGGAATATTTACCTAATCTATTATCA
1 TGGAACATTTACCTAA-CCATTATCA
43867952 TGGAACATTTACCTAA-CATTATCA
1 TGGAACATTTACCTAACCATTATCA
* *
43867976 T-TAA-ATTT--CTAACTATTATCA
1 TGGAACATTTACCTAACCATTATCA
43867997 TGGAACATTTACCTAACCCATTATCA
1 TGGAACATTTACCTAA-CCATTATCA
43868023 ATTTGTACCA
Statistics
Matches: 105, Mismatches: 10, Indels: 14
0.81 0.08 0.11
Matches are distributed among these distances:
20 4 0.04
21 8 0.08
22 6 0.06
23 6 0.06
24 8 0.08
25 29 0.28
26 44 0.42
ACGTcount: A:0.36, C:0.20, G:0.07, T:0.36
Consensus pattern (25 bp):
TGGAACATTTACCTAACCATTATCA
Found at i:43867951 original size:51 final size:49
Alignment explanation
Indices: 43867875--43868022 Score: 196
Period size: 51 Copynumber: 3.0 Consensus size: 49
43867865 AATGCCCATC
* *
43867875 TGGAACATTTACCTAAACCATTATCATGGAACATTTATCTAACCATTATCA
1 TGGAA-ATTTACCT-AACTATTATCATGGAACATTTACCTAACCATTATCA
43867926 TGGAATATTTACCTAATCTATTATCATGGAACATTTACCTAA-CATTATCA
1 TGGAA-ATTTACCTAA-CTATTATCATGGAACATTTACCTAACCATTATCA
*
43867976 T-TAAATTT--CTAACTATTATCATGGAACATTTACCTAACCCATTATCA
1 TGGAAATTTACCTAACTATTATCATGGAACATTTACCTAA-CCATTATCA
43868023 ATTTGTACCA
Statistics
Matches: 90, Mismatches: 4, Indels: 10
0.87 0.04 0.10
Matches are distributed among these distances:
45 25 0.28
46 4 0.04
47 8 0.09
48 4 0.04
49 2 0.02
50 11 0.12
51 36 0.40
ACGTcount: A:0.36, C:0.20, G:0.07, T:0.36
Consensus pattern (49 bp):
TGGAAATTTACCTAACTATTATCATGGAACATTTACCTAACCATTATCA
Found at i:43867999 original size:71 final size:77
Alignment explanation
Indices: 43867875--43868022 Score: 209
Period size: 71 Copynumber: 2.0 Consensus size: 77
43867865 AATGCCCATC
*
43867875 TGGAACATTTACCTAAACCATTATCATGGAACATTTATCTAACCATTATCATGGAATATTTACCT
1 TGGAACATTTACCTAAACCATTATCATGGAACATTTATCTAACCATTATCATGGAACATTTACCT
* *
43867940 AATCTATTATCA
66 AACCCATTATCA
* *
43867952 TGGAACATTTACCT-AA-CATTATCAT-TAA-A-TT-TCTAACTATTATCATGGAACATTTACCT
1 TGGAACATTTACCTAAACCATTATCATGGAACATTTATCTAACCATTATCATGGAACATTTACCT
43868011 AACCCATTATCA
66 AACCCATTATCA
43868023 ATTTGTACCA
Statistics
Matches: 66, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
71 36 0.55
72 2 0.03
73 1 0.02
74 2 0.03
75 9 0.14
76 2 0.03
77 14 0.21
ACGTcount: A:0.36, C:0.20, G:0.07, T:0.36
Consensus pattern (77 bp):
TGGAACATTTACCTAAACCATTATCATGGAACATTTATCTAACCATTATCATGGAACATTTACCT
AACCCATTATCA
Found at i:43870017 original size:284 final size:285
Alignment explanation
Indices: 43869479--43870052 Score: 1064
Period size: 284 Copynumber: 2.0 Consensus size: 285
43869469 TGGCCAAGTT
43869479 TAATTTCATGCATGGTGAGTGATTCTGATTTCGTTTTTAATGAATTTTATGTTTTTGAGCTTGTA
1 TAATTTCATGCATGGTGAGTGATTCTGATTTCGTTTTTAATGAATTTTATGTTTTTGAGCTTGTA
43869544 TAAGCTTAATCTAACTAGCTCAGGGTCAATTTGTAAAAATGTTAAAGGTTTAGGGATTTCCAATG
66 TAAGCTTAATCTAACTAGCTCAGGGTCAATTTGT-AAAA---TAAAGGTTTAGGGATTTCCAATG
43869609 AATGATTTTTAGGTGTTTTTGAATTTAATGGATGAATTATTAAAGTTGATAGCTAGTTATAAGCA
127 AATGATTTTTAGGTGTTTTTGAATTTAATGGATGAATTATTAAAGTTGATAGCTAGTTATAAGCA
43869674 TTTCGTGAAGTGATTTTTAGTGATTTTGAATGTTAAGGATTAAATTGTTTAAATAGTAAAATTCA
192 TTTCGTGAAGTGATTTTTAGTGATTTTGAATGTTAAGGATTAAATTGTTTAAATAGTAAAATTCA
43869739 AGGGAAATAATATGAATTTGTGAAAGATG
257 AGGGAAATAATATGAATTTGTGAAAGATG
43869768 TAATTTCATGCATGGTGAGTGATTTCTGATTTCGTTTTTAATGAATTTTATGTTTTTGAGCTTGT
1 TAATTTCATGCATGGTGAGTGA-TTCTGATTTCGTTTTTAATGAATTTTATGTTTTTGAGCTTGT
*
43869833 ATAAGCTTAATCTAACTAGCTCAGGGTCAATTTGT-AAA-AAATGTTTAGGGATTTCCAATGAAT
65 ATAAGCTTAATCTAACTAGCTCAGGGTCAATTTGTAAAATAAAGGTTTAGGGATTTCCAATGAAT
43869896 GATTTTTAGGTGTTTTTGAATTTAATGGATGAATTATTAAAGTTGATAGCTAGTTATAAGCATTT
130 GATTTTTAGGTGTTTTTGAATTTAATGGATGAATTATTAAAGTTGATAGCTAGTTATAAGCATTT
43869961 CGTGAAGTGA-TTTTAGTGATTTTTGAATGTTAAGGATTAAATTGTTTAAATAGTAAAATTCAAG
195 CGTGAAGTGATTTTTAGTGA-TTTTGAATGTTAAGGATTAAATTGTTTAAATAGTAAAATTCAAG
43870025 GGAAATAATATGAATTTGTGAAAGATG
259 GGAAATAATATGAATTTGTGAAAGATG
43870052 T
1 T
43870053 GGACTATTTT
Statistics
Matches: 282, Mismatches: 1, Indels: 9
0.97 0.00 0.03
Matches are distributed among these distances:
283 9 0.03
284 171 0.61
288 3 0.01
289 22 0.08
290 77 0.27
ACGTcount: A:0.32, C:0.06, G:0.20, T:0.42
Consensus pattern (285 bp):
TAATTTCATGCATGGTGAGTGATTCTGATTTCGTTTTTAATGAATTTTATGTTTTTGAGCTTGTA
TAAGCTTAATCTAACTAGCTCAGGGTCAATTTGTAAAATAAAGGTTTAGGGATTTCCAATGAATG
ATTTTTAGGTGTTTTTGAATTTAATGGATGAATTATTAAAGTTGATAGCTAGTTATAAGCATTTC
GTGAAGTGATTTTTAGTGATTTTGAATGTTAAGGATTAAATTGTTTAAATAGTAAAATTCAAGGG
AAATAATATGAATTTGTGAAAGATG
Found at i:43870795 original size:46 final size:46
Alignment explanation
Indices: 43870443--43870803 Score: 227
Period size: 45 Copynumber: 7.9 Consensus size: 46
43870433 TTGGCTTGAA
* * * *
43870443 GGAAATGATTAAGACCATAGTTGAAAAACACTATAGC-ACTAT-ACC
1 GGAAATGAATAAGACCATAGTTGAAAGACACTATGGCAAC-ATGACG
* * *
43870488 GGAAATAAATAAGACCATAGGTGAAAGACACTATAGC-ACTAT-ACCG
1 GGAAATGAATAAGACCATAGTTGAAAGACACTATGGCAAC-ATGA-CG
* * * *
43870534 GAAAATGAATAAAACCATAGTTGAAGGACACTATGGCAACATAAC-
1 GGAAATGAATAAGACCATAGTTGAAAGACACTATGGCAACATGACG
* * * * * * *
43870579 AGAAACGAGTAAGACCATAGCTAAAAGACATTAT-G--ACATTACG
1 GGAAATGAATAAGACCATAGTTGAAAGACACTATGGCAACATGACG
** * * * * * * * ** * *
43870622 ATTCAAACGAGTAAGACTATAGCTAAAAGACGCTATGACGTCACGA-T
1 --GGAAATGAATAAGACCATAGTTGAAAGACACTATGGCAACATGACG
** * ** *
43870669 TCAGATGTGTAAGACCATAGTTGAAAGATACTATGGCAACATGACG
1 GGAAATGAATAAGACCATAGTTGAAAGACACTATGGCAACATGACG
* * * * *
43870715 TGAAATGAATAAGACCATGGTCGAAAGACACTATGGGAAGATGACG
1 GGAAATGAATAAGACCATAGTTGAAAGACACTATGGCAACATGACG
*
43870761 GGAAATGAATAAGACCATAGTTGAAAGACACTATGGCATCATG
1 GGAAATGAATAAGACCATAGTTGAAAGACACTATGGCAACATG
43870804 CCTAAAATAA
Statistics
Matches: 247, Mismatches: 59, Indels: 19
0.76 0.18 0.06
Matches are distributed among these distances:
42 6 0.02
44 1 0.00
45 125 0.51
46 109 0.44
47 3 0.01
48 3 0.01
ACGTcount: A:0.43, C:0.16, G:0.21, T:0.20
Consensus pattern (46 bp):
GGAAATGAATAAGACCATAGTTGAAAGACACTATGGCAACATGACG
Found at i:43875501 original size:177 final size:177
Alignment explanation
Indices: 43875200--43875718 Score: 745
Period size: 177 Copynumber: 2.9 Consensus size: 177
43875190 CTTCAGTTCA
* *
43875200 CTCCACTGCTACATTAGGGAGATAAAATCCAC-ATCTTCAGTCTGCTTCCTTACTACCTCAGGAA
1 CTCCACTACTAC-TTAGGGAGATAAAATCTACAATCTTCAGTCTGCTTCCTTACTACCTCAGGAA
* * *
43875264 GATAAGACTACCATCTTTAGCCTGCCCCCTTGCTACCTCAAGGAGATAAGGCTAGTGGCTAAAAT
65 GATAAGACTACAATCTTTAGCCTGCTCCCTTGCTACCTCAAAGAGATAAGGCTAGTGGCTAAAAT
* * ** * *
43875329 CTGCTCCCTTGCTACCTCGGGAAGATAAGATTCGTCATCTTTGATCTG
130 CTGCTCCCCTGCTACCTCGAGAAGATAAGATTCACCATATTTGATATG
* *
43875377 CTCCACTACTACTTAGGGAGATAAAATCTACAATCTTTAGTTTGCTTCCTTACTACCTCAGGAAG
1 CTCCACTACTACTTAGGGAGATAAAATCTACAATCTTCAGTCTGCTTCCTTACTACCTCAGGAAG
* * * *
43875442 ATAAGGCTACAATCTTCAGCCTGCTCCCTTGCTACCTCAAAGAGTTAAGGCTCGTGGCTAAAATC
66 ATAAGACTACAATCTTTAGCCTGCTCCCTTGCTACCTCAAAGAGATAAGGCTAGTGGCTAAAATC
43875507 TGCTCCCCTGCTACCTCGAGAAGATAAGATTCACCATATTTGATATG
131 TGCTCCCCTGCTACCTCGAGAAGATAAGATTCACCATATTTGATATG
* * * * * *
43875554 CTCCACTACTATCTCAGGGAGATAAGATCTATAATCTTCAGTCTAC-TCTCTTGCTACCTCAAGA
1 CTCCACTACTA-CTTAGGGAGATAAAATCTACAATCTTCAGTCTGCTTC-CTTACTACCTCAGGA
* *
43875618 AGATAAGACTACACTCTTTAGCCTGCTCCCTTGCTACCTCAAAGAGATAAGGCTGGTGGCTAAAA
64 AGATAAGACTACAATCTTTAGCCTGCTCCCTTGCTACCTCAAAGAGATAAGGCTAGTGGCT-AAA
* *
43875683 ATCTGCTCCCCTGCTACCTTGCGAAGATAAGATTCA
128 ATCTGCTCCCCTGCTACCTCGAGAAGATAAGATTCA
43875719 TCGTCTGCAA
Statistics
Matches: 306, Mismatches: 32, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
176 18 0.06
177 154 0.50
178 97 0.32
179 37 0.12
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.29
Consensus pattern (177 bp):
CTCCACTACTACTTAGGGAGATAAAATCTACAATCTTCAGTCTGCTTCCTTACTACCTCAGGAAG
ATAAGACTACAATCTTTAGCCTGCTCCCTTGCTACCTCAAAGAGATAAGGCTAGTGGCTAAAATC
TGCTCCCCTGCTACCTCGAGAAGATAAGATTCACCATATTTGATATG
Found at i:43875659 original size:44 final size:44
Alignment explanation
Indices: 43875232--43875668 Score: 203
Period size: 44 Copynumber: 9.9 Consensus size: 44
43875222 TAAAATCCAC
* * * * *
43875232 ATCTTCAGTCTGCTTCCTTACTACCTCAGGAAGATAAGACTACC
1 ATCTTTAGTCTGCTCCCTTGCTACCTCAAGAAGATAAGACTACA
* * * * **
43875276 ATCTTTAGCCTGCCCCCTTGCTACCTCAAGGAGATAAGGCTAGT
1 ATCTTTAGTCTGCTCCCTTGCTACCTCAAGAAGATAAGACTACA
** ** * **
43875320 GGCTAAAATCTGCTCCCTTGCTACCTCGGGAAGATAAGATTCGT-C-
1 ATCTTTAGTCTGCTCCCTTGCTACCTCAAGAAGATAAGA--C-TACA
* * * * *
43875365 ATCTTT-GATCTGCTCCAC-TACTA-CTTAGGGAGATAAAATCTACA
1 ATCTTTAG-TCTGCTCC-CTTGCTACCTCAAGAAGATAAGA-CTACA
* * * * *
43875409 ATCTTTAGTTTGCTTCCTTACTACCTCAGGAAGATAAGGCTACA
1 ATCTTTAGTCTGCTCCCTTGCTACCTCAAGAAGATAAGACTACA
* * * *
43875453 ATCTTCAGCCTGCTCCCTTGCTACCTCAA-AGAGTTAAGGCT-C-
1 ATCTTTAGTCTGCTCCCTTGCTACCTCAAGA-AGATAAGACTACA
* ** * * * * *
43875495 GTGGCTAAAATCTGCTCCCCTGCTACCTCGAGAAGATAAGATTCACC
1 AT--CTTTAGTCTGCTCCCTTGCTACCTCAAGAAGATAAGACT-ACA
* * * * * * *
43875542 ATATTT-GATATGCTCCAC-TACTATCTCAGGGAGATAAGATCTATA
1 ATCTTTAG-TCTGCTCC-CTTGCTACCTCAAGAAGATAAGA-CTACA
* * *
43875587 ATCTTCAGTCTACTCTCTTGCTACCTCAAGAAGATAAGACTACA
1 ATCTTTAGTCTGCTCCCTTGCTACCTCAAGAAGATAAGACTACA
* *
43875631 CTCTTTAGCCTGCTCCCTTGCTACCTCAA-AGAGATAAG
1 ATCTTTAGTCTGCTCCCTTGCTACCTCAAGA-AGATAAG
43875669 GCTGGTGGCT
Statistics
Matches: 286, Mismatches: 84, Indels: 46
0.69 0.20 0.11
Matches are distributed among these distances:
42 2 0.01
43 7 0.02
44 191 0.67
45 78 0.27
46 6 0.02
47 2 0.01
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.29
Consensus pattern (44 bp):
ATCTTTAGTCTGCTCCCTTGCTACCTCAAGAAGATAAGACTACA
Found at i:43890107 original size:40 final size:40
Alignment explanation
Indices: 43890047--43890230 Score: 230
Period size: 40 Copynumber: 4.6 Consensus size: 40
43890037 TATTCGAATG
*
43890047 ATATCCGGGCTAAG-TCCCGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
* * *
43890087 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAG-TGACT
* * * *
43890127 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
*
43890167 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
*
43890207 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
43890231 CTTGTGCGAG
Statistics
Matches: 124, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
39 1 0.01
40 120 0.97
41 3 0.02
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
Found at i:43890180 original size:80 final size:80
Alignment explanation
Indices: 43890047--43890266 Score: 279
Period size: 80 Copynumber: 2.8 Consensus size: 80
43890037 TATTCGAATG
* * * *
43890047 ATATCCGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACTATATCCGGACTAAGAT-CCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC-TTTGTGCTAGTGATTATATCCGGGCTAAGATCCCGAAGGC
* *
43890111 ATTTGTGCGAGTTG-CT
65 ATTTATGCGAG-TGACC
*
43890127 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAG-TCCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC-TTTGTGCTAGTGATTATATCCGGGCTAAGATCCCGAAGGC
*
43890191 ATTTATGCTAGTGACC
65 ATTTATGCGAGTGACC
* * *
43890207 ATATCCGGGCTAAGACCCGAAGGCCTTGTGCGAGTGGTTATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGACCCGAAGGCTTTGTGCTAGTGATTATATCCGGGCTAAGATCCCGAAG
43890267 ATACTTGGGT
Statistics
Matches: 124, Mismatches: 13, Indels: 8
0.86 0.09 0.06
Matches are distributed among these distances:
78 14 0.11
79 20 0.16
80 90 0.73
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCTTTGTGCTAGTGATTATATCCGGGCTAAGATCCCGAAGGCA
TTTATGCGAGTGACC
Found at i:43905192 original size:22 final size:22
Alignment explanation
Indices: 43905164--43905208 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
43905154 TAGTGTCTCA
43905164 TTCAATTGTTCCAATTATGTTC
1 TTCAATTGTTCCAATTATGTTC
43905186 TTCAATTGTTCCAATTATGTTC
1 TTCAATTGTTCCAATTATGTTC
43905208 T
1 T
43905209 AATAGTGAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.22, C:0.18, G:0.09, T:0.51
Consensus pattern (22 bp):
TTCAATTGTTCCAATTATGTTC
Found at i:43906869 original size:26 final size:26
Alignment explanation
Indices: 43906812--43906873 Score: 79
Period size: 26 Copynumber: 2.4 Consensus size: 26
43906802 GAGGTTGTAG
*
43906812 ACTGAGCTCGCATGATGAGATCACAG
1 ACTGAGCTCGCATGATGAGATCACAA
* * * *
43906838 ATTGAGCTCTCATGATGGGATCGCAA
1 ACTGAGCTCGCATGATGAGATCACAA
43906864 ACTGAGCTCG
1 ACTGAGCTCG
43906874 TGGCTCGCTC
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (26 bp):
ACTGAGCTCGCATGATGAGATCACAA
Found at i:43910372 original size:38 final size:38
Alignment explanation
Indices: 43910321--43910398 Score: 138
Period size: 38 Copynumber: 2.1 Consensus size: 38
43910311 AAAGCATATG
43910321 AGATAGGTACACAAAGCATATGGATGCACGTGTTGAAT
1 AGATAGGTACACAAAGCATATGGATGCACGTGTTGAAT
* *
43910359 AGATAGGTGCACAAGGCATATGGATGCACGTGTTGAAT
1 AGATAGGTACACAAAGCATATGGATGCACGTGTTGAAT
43910397 AG
1 AG
43910399 GATTGTAAGT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.35, C:0.13, G:0.29, T:0.23
Consensus pattern (38 bp):
AGATAGGTACACAAAGCATATGGATGCACGTGTTGAAT
Found at i:43912742 original size:46 final size:45
Alignment explanation
Indices: 43912600--43912748 Score: 135
Period size: 46 Copynumber: 3.2 Consensus size: 45
43912590 ATGAGAGCCT
43912600 GTGTAAGACCATGTCTGGGACATGGCATCGGC-ATCGAGACG--AGTGCTA
1 GTGTAAGA-CATGTCTGGGACAT-GCATCGGCTA-CGAGA-GATAGT-C-A
* * * * *
43912648 GTGTAAGACATGTCCGGGACATGTATCGGCCT-TGAGACATAAGGCA
1 GTGTAAGACATGTCTGGGACATGCATCGG-CTACGAGAGAT-AGTCA
*
43912694 GTGTAAGACATGTCTAGGACATGCATCGGCTACGAGATGATAGTCA
1 GTGTAAGACATGTCTGGGACATGCATCGGCTACGAGA-GATAGTCA
43912740 GTGTAAGAC
1 GTGTAAGAC
43912749 CATATTTGAG
Statistics
Matches: 83, Mismatches: 11, Indels: 16
0.75 0.10 0.15
Matches are distributed among these distances:
45 2 0.02
46 54 0.65
47 17 0.20
48 10 0.12
ACGTcount: A:0.28, C:0.19, G:0.31, T:0.22
Consensus pattern (45 bp):
GTGTAAGACATGTCTGGGACATGCATCGGCTACGAGAGATAGTCA
Found at i:43913927 original size:21 final size:22
Alignment explanation
Indices: 43913887--43913928 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
43913877 GCCAAATTGG
43913887 TCACACGGACATGTTGCCCCTC
1 TCACACGGACATGTTGCCCCTC
*
43913909 TCACACGGGCATG-TGCCCCT
1 TCACACGGACATGTTGCCCCT
43913929 GTGTCAAGTG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.17, C:0.40, G:0.21, T:0.21
Consensus pattern (22 bp):
TCACACGGACATGTTGCCCCTC
Found at i:43916732 original size:23 final size:24
Alignment explanation
Indices: 43916685--43916737 Score: 74
Period size: 23 Copynumber: 2.2 Consensus size: 24
43916675 TCGAAAGAGC
43916685 GTCCCGTTATTAGCCCTCTCGAGT
1 GTCCCGTTATTAGCCCTCTCGAGT
*
43916709 GTCCCGTTA-TAGCTCT-TCGAAGT
1 GTCCCGTTATTAGCCCTCTCG-AGT
43916732 GTCCCG
1 GTCCCG
43916738 ATAGGTTGTG
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
22 3 0.11
23 15 0.56
24 9 0.33
ACGTcount: A:0.13, C:0.32, G:0.23, T:0.32
Consensus pattern (24 bp):
GTCCCGTTATTAGCCCTCTCGAGT
Found at i:43916929 original size:24 final size:25
Alignment explanation
Indices: 43916883--43916931 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 25
43916873 TGGCTATCCA
*
43916883 GAGCTTCCCGTTACATGGCTCTTTGT
1 GAGCTTCCCGGTA-ATGGCTCTTTGT
*
43916909 GAGCTTCCCGGT-ATGGTTCTTTG
1 GAGCTTCCCGGTAATGGCTCTTTG
43916932 AGAACTTCTC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 10 0.48
26 11 0.52
ACGTcount: A:0.10, C:0.24, G:0.27, T:0.39
Consensus pattern (25 bp):
GAGCTTCCCGGTAATGGCTCTTTGT
Found at i:43920620 original size:29 final size:29
Alignment explanation
Indices: 43920588--43920816 Score: 160
Period size: 29 Copynumber: 7.9 Consensus size: 29
43920578 GGCTATCGAT
43920588 TATGAAAAGGGATGGTGACGACCATCAAC
1 TATGAAAAGGGATGGTGACGACCATCAAC
*
43920617 TATGAAAAGGGATGGTGATGACCATCGAA-
1 TATGAAAAGGGATGGTGACGACCATC-AAC
* * * * * *
43920646 TATGAAAAGAGATAGCT-TCGGCTATCGAC
1 TATGAAAAGGGAT-GGTGACGACCATCAAC
* * ** * *
43920675 TATGAACAGGGATAGTTTC-AGCTATCGA-
1 TATGAAAAGGGATGGTGACGA-CCATCAAC
43920703 TCATGAAAAGGGATGGTGACGACCATCAAC
1 T-ATGAAAAGGGATGGTGACGACCATCAAC
* ***
43920733 TATGAAAAGGGATGGTGACAACCATCGGT
1 TATGAAAAGGGATGGTGACGACCATCAAC
* *** * *
43920762 TAATGAAGAGGGATGGTTTTGACCACCAAA
1 T-ATGAAAAGGGATGGTGACGACCATCAAC
* *
43920792 TATGAAAAGGGATGATTACGACCAT
1 TATGAAAAGGGATGGTGACGACCAT
43920817 TGTTTAGCAC
Statistics
Matches: 154, Mismatches: 37, Indels: 18
0.74 0.18 0.09
Matches are distributed among these distances:
28 3 0.02
29 125 0.81
30 26 0.17
ACGTcount: A:0.36, C:0.15, G:0.27, T:0.22
Consensus pattern (29 bp):
TATGAAAAGGGATGGTGACGACCATCAAC
Found at i:43920644 original size:58 final size:58
Alignment explanation
Indices: 43920582--43920805 Score: 209
Period size: 58 Copynumber: 3.8 Consensus size: 58
43920572 AACTTTGGCT
*
43920582 ATCGATTATGAAAAGGGATGGTGACGACCATCAACTATGAAAAGGGATGGTGATGACC
1 ATCGATTATGAAAAGGGATGGTGACGACCATCAACTATGAAAAGGGATGGTGATAACC
* * * * * * * * * * * *
43920640 ATCGAATATGAAAAGAGATAGCT-TCGGCTATCGACTATGAACAGGGATAGT-TTCAGCT
1 ATCGATTATGAAAAGGGAT-GGTGACGACCATCAACTATGAAAAGGGATGGTGAT-AACC
* *
43920698 ATCGATCATGAAAAGGGATGGTGACGACCATCAACTATGAAAAGGGATGGTGACAACC
1 ATCGATTATGAAAAGGGATGGTGACGACCATCAACTATGAAAAGGGATGGTGATAACC
* * *** * *
43920756 ATCGGTTAATGAAGAGGGATGGTTTTGACCACCAAATATGAAAAGGGATG
1 ATCGATT-ATGAAAAGGGATGGTGACGACCATCAACTATGAAAAGGGATG
43920806 ATTACGACCA
Statistics
Matches: 126, Mismatches: 35, Indels: 9
0.74 0.21 0.05
Matches are distributed among these distances:
57 3 0.02
58 85 0.67
59 38 0.30
ACGTcount: A:0.36, C:0.14, G:0.28, T:0.22
Consensus pattern (58 bp):
ATCGATTATGAAAAGGGATGGTGACGACCATCAACTATGAAAAGGGATGGTGATAACC
Found at i:43920671 original size:87 final size:87
Alignment explanation
Indices: 43920551--43920741 Score: 217
Period size: 87 Copynumber: 2.2 Consensus size: 87
43920541 TATCGGTGAT
* * * * *
43920551 CATCGATTAATGAAAAGGGATAACTTTGGCTATCGATTATGAAAAGGGATGGTGAC-GACCATCA
1 CATCGAAT-ATGAAAAGAGATAACTTCGGCTATCGACTATGAAAAGGGATAGTGACAG-CCATCA
*
43920615 A-CTATGAAAAGGGATGGTGATGAC
64 ATC-ATGAAAAGGGATGGTGACGAC
* * ** * *
43920639 CATCGAATATGAAAAGAGATAGCTTCGGCTATCGACTATGAACAGGGATAGTTTCAGCTATCGAT
1 CATCGAATATGAAAAGAGATAACTTCGGCTATCGACTATGAAAAGGGATAGTGACAGCCATCAAT
43920704 CATGAAAAGGGATGGTGACGAC
66 CATGAAAAGGGATGGTGACGAC
43920726 CATC-AACTATGAAAAG
1 CATCGAA-TATGAAAAG
43920742 GGATGGTGAC
Statistics
Matches: 88, Mismatches: 12, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
86 2 0.02
87 77 0.88
88 9 0.10
ACGTcount: A:0.37, C:0.15, G:0.26, T:0.23
Consensus pattern (87 bp):
CATCGAATATGAAAAGAGATAACTTCGGCTATCGACTATGAAAAGGGATAGTGACAGCCATCAAT
CATGAAAAGGGATGGTGACGAC
Found at i:43920816 original size:59 final size:59
Alignment explanation
Indices: 43920705--43920816 Score: 143
Period size: 59 Copynumber: 1.9 Consensus size: 59
43920695 GCTATCGATC
* * *
43920705 ATGAAAAGGGATGGTGACGACCATCAACTATGAAAAGGGATGGTGACAACCATCGGTTA
1 ATGAAAAGGGATGGTGACGACCACCAAATATGAAAAGGGATGATGACAACCATCGGTTA
* *** * *
43920764 ATGAAGAGGGATGGTTTTGACCACCAAATATGAAAAGGGATGATTACGACCAT
1 ATGAAAAGGGATGGTGACGACCACCAAATATGAAAAGGGATGATGACAACCAT
43920817 TGTTTAGCAC
Statistics
Matches: 44, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
59 44 1.00
ACGTcount: A:0.38, C:0.14, G:0.28, T:0.21
Consensus pattern (59 bp):
ATGAAAAGGGATGGTGACGACCACCAAATATGAAAAGGGATGATGACAACCATCGGTTA
Found at i:43928149 original size:19 final size:19
Alignment explanation
Indices: 43928125--43928161 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
43928115 ACTATGGTTC
43928125 AAAATAAGCTAAAATATAT
1 AAAATAAGCTAAAATATAT
* *
43928144 AAAATATGCTGAAATATA
1 AAAATAAGCTAAAATATA
43928162 AAATTGTAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.59, C:0.05, G:0.08, T:0.27
Consensus pattern (19 bp):
AAAATAAGCTAAAATATAT
Found at i:43930275 original size:18 final size:18
Alignment explanation
Indices: 43930244--43930279 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
43930234 ATTTAGTCGG
* *
43930244 TTTCTTCTTTCCCTTAGA
1 TTTCTGCTTCCCCTTAGA
43930262 TTTCTGCTTCCCCTTAGA
1 TTTCTGCTTCCCCTTAGA
43930280 GGATAAGAGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.11, C:0.31, G:0.08, T:0.50
Consensus pattern (18 bp):
TTTCTGCTTCCCCTTAGA
Found at i:43934883 original size:15 final size:15
Alignment explanation
Indices: 43934865--43934904 Score: 62
Period size: 15 Copynumber: 2.7 Consensus size: 15
43934855 TCCAAGGTTG
*
43934865 AGAAACCCAGAATAA
1 AGAAACCCAAAATAA
*
43934880 AGAAATCCAAAATAA
1 AGAAACCCAAAATAA
43934895 AGAAACCCAA
1 AGAAACCCAA
43934905 GATACGATAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.62, C:0.20, G:0.10, T:0.07
Consensus pattern (15 bp):
AGAAACCCAAAATAA
Found at i:43934899 original size:30 final size:30
Alignment explanation
Indices: 43934835--43934903 Score: 86
Period size: 30 Copynumber: 2.3 Consensus size: 30
43934825 TAATGATAAC
* ** *
43934835 AAGAAAACC-GAATAAAGAAATCCAAGGTT
1 AAGAAACCCAGAATAAAGAAATCCAAAATA
*
43934864 GAGAAACCCAGAATAAAGAAATCCAAAATA
1 AAGAAACCCAGAATAAAGAAATCCAAAATA
43934894 AAGAAACCCA
1 AAGAAACCCA
43934904 AGATACGATA
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
29 7 0.21
30 26 0.79
ACGTcount: A:0.58, C:0.17, G:0.14, T:0.10
Consensus pattern (30 bp):
AAGAAACCCAGAATAAAGAAATCCAAAATA
Found at i:43947119 original size:29 final size:29
Alignment explanation
Indices: 43947085--43947158 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
43947075 TCATCAACCA
*
43947085 CGCACACTTAGTGCCATGTACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAACT
**
43947114 CGCACACTTAGTGCCATGCATTTCAAGTT
1 CGCACACTTAGTGCCATGCATTTCAAACT
*
43947143 CGCACACCTAGTGCCA
1 CGCACACTTAGTGCCA
43947159 ATCTCACAAC
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 3 0.08
29 37 0.93
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAACT
Found at i:43953465 original size:26 final size:25
Alignment explanation
Indices: 43953416--43953468 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 25
43953406 AATGGTAGTT
43953416 AAATGTTAAATTTATATGCTGTTATG
1 AAATGTTAAATTTATATGC-GTTATG
43953442 AAATGTTAGAATTTATATTG-GTTATG
1 AAATGTTA-AATTTATA-TGCGTTATG
43953468 A
1 A
43953469 CTAAATATGA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 15 0.60
27 8 0.32
28 2 0.08
ACGTcount: A:0.36, C:0.02, G:0.17, T:0.45
Consensus pattern (25 bp):
AAATGTTAAATTTATATGCGTTATG
Found at i:43955012 original size:9 final size:11
Alignment explanation
Indices: 43954985--43955009 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
43954975 ATATATGTGG
43954985 AATATTTGGAT
1 AATATTTGGAT
43954996 AATATTTGGAT
1 AATATTTGGAT
43955007 AAT
1 AAT
43955010 TTGAATGTGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.40, C:0.00, G:0.16, T:0.44
Consensus pattern (11 bp):
AATATTTGGAT
Found at i:43974876 original size:11 final size:11
Alignment explanation
Indices: 43974860--43974897 Score: 51
Period size: 10 Copynumber: 3.4 Consensus size: 11
43974850 AAATTACATA
43974860 ATAAAAATATT
1 ATAAAAATATT
43974871 ATAAAAA-ATT
1 ATAAAAATATT
43974881 ATAAAACATATAT
1 ATAAAA-ATAT-T
43974894 ATAA
1 ATAA
43974898 TGAGATAGGT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
10 9 0.38
11 8 0.33
12 2 0.08
13 5 0.21
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.32
Consensus pattern (11 bp):
ATAAAAATATT
Found at i:43979835 original size:28 final size:28
Alignment explanation
Indices: 43979774--43979835 Score: 79
Period size: 28 Copynumber: 2.2 Consensus size: 28
43979764 GCTCAAATAG
* * * *
43979774 GGGAATATGATAGTTTGTGAGTATGAAT
1 GGGAATATGATAGTGTCTGACTATGAAC
*
43979802 GAGAATATGATAGTGTCTGACTATGAAC
1 GGGAATATGATAGTGTCTGACTATGAAC
43979830 GGGAAT
1 GGGAAT
43979836 TTGTTAGATT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.34, C:0.05, G:0.31, T:0.31
Consensus pattern (28 bp):
GGGAATATGATAGTGTCTGACTATGAAC
Found at i:43993478 original size:26 final size:26
Alignment explanation
Indices: 43993413--43993469 Score: 105
Period size: 26 Copynumber: 2.2 Consensus size: 26
43993403 CTTTTACACT
43993413 TGGCCAACAGACACGGCCATGTGCCA
1 TGGCCAACAGACACGGCCATGTGCCA
*
43993439 TGGCCAACAGACACGGCCGTGTGCCA
1 TGGCCAACAGACACGGCCATGTGCCA
43993465 TGGCC
1 TGGCC
43993470 GTGTGACACT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.23, C:0.35, G:0.30, T:0.12
Consensus pattern (26 bp):
TGGCCAACAGACACGGCCATGTGCCA
Found at i:44011174 original size:56 final size:54
Alignment explanation
Indices: 44011032--44011174 Score: 130
Period size: 56 Copynumber: 2.5 Consensus size: 54
44011022 CCACATGTTG
*
44011032 TAAAAAGGATTTAGCCTGGACGAGTAATCCTAATATAAGCCGCTTGAGCCAATGC
1 TAAAAAGGATTTAGCCTGGACG-GTAATCCAAATATAAGCCGCTTGAGCCAATGC
** * * *
44011087 TATAGATTGGATTTAGCCCGGACGGGCAATCCAAAT-TAAG-CTCTTAGAG-CATATGTCC
1 TA-A-AAAGGATTTAGCCTGGAC-GGTAATCCAAATATAAGCCGCTT-GAGCCA-ATG--C
44011145 TAAAAAGGATTTAGCCTGGACTGGTAATCC
1 TAAAAAGGATTTAGCCTGGAC-GGTAATCC
44011175 TATAACATAA
Statistics
Matches: 70, Mismatches: 11, Indels: 13
0.74 0.12 0.14
Matches are distributed among these distances:
55 8 0.11
56 33 0.47
57 25 0.36
58 4 0.06
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.26
Consensus pattern (54 bp):
TAAAAAGGATTTAGCCTGGACGGTAATCCAAATATAAGCCGCTTGAGCCAATGC
Found at i:44014206 original size:30 final size:30
Alignment explanation
Indices: 44014172--44014232 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
44014162 TTCCCGAGCC
44014172 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
* * * * *
44014202 TAGGGGCAAAATTGTAATTATTCCAAAGTT
1 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
44014232 T
1 T
44014233 GAGTTAAGGA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.41, C:0.07, G:0.23, T:0.30
Consensus pattern (30 bp):
TAGGGGAAAAAGTGTAAATATGCAAAAGTT
Found at i:44015014 original size:68 final size:68
Alignment explanation
Indices: 44014942--44015089 Score: 160
Period size: 64 Copynumber: 2.2 Consensus size: 68
44014932 CATCATGTGT
* * * *
44014942 ACAAGAGAGCTACAAGACATTATTATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTACAAGACA-TA-TATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
44015005 TGTAG
64 TGTAG
* ** * *
44015010 ACAAGAGAGC--CACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCAT
1 ACAAGAGAGCTACAAGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCAT
44015073 GTAG
65 GTAG
44015077 ACAAGAGAGCTAC
1 ACAAGAGAGCTAC
44015090 GAGATAAATT
Statistics
Matches: 66, Mismatches: 9, Indels: 9
0.79 0.11 0.11
Matches are distributed among these distances:
64 25 0.38
65 2 0.03
66 6 0.09
67 22 0.33
68 10 0.15
69 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.28, T:0.22
Consensus pattern (68 bp):
ACAAGAGAGCTACAAGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATG
TAG
Found at i:44015046 original size:64 final size:64
Alignment explanation
Indices: 44014965--44015150 Score: 198
Period size: 67 Copynumber: 2.9 Consensus size: 64
44014955 AAGACATTAT
* *
44014965 TATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCCACGGGATA
1 TATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCCACGAGATA
* * * * * *
44015029 TATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGA
1 TATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCCACGAGA
44015094 TA
63 TA
* * * *
44015096 AAT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGCC
1 TATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGCC
44015151 GAACTATATG
Statistics
Matches: 99, Mismatches: 18, Indels: 11
0.77 0.14 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 26 0.26
66 21 0.21
67 32 0.32
ACGTcount: A:0.28, C:0.18, G:0.31, T:0.23
Consensus pattern (64 bp):
TATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCCACGAGATA
Found at i:44028196 original size:40 final size:44
Alignment explanation
Indices: 44028100--44028199 Score: 127
Period size: 40 Copynumber: 2.4 Consensus size: 44
44028090 AAAATGATTC
**
44028100 CGCACACTTAGTGCCATCTCAACTAGCCGAAACTAAGTTGGTAT
1 CGCACACTTAGTGCCATCTCAACTAGCCGAAACTAAGTTGAAAT
* * *
44028144 CGCACACTTAGTGCC-T-TTAA-TAGCCGAAGCT-AGTTTAAAT
1 CGCACACTTAGTGCCATCTCAACTAGCCGAAACTAAGTTGAAAT
44028184 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
44028200 ATGCTTTCAA
Statistics
Matches: 50, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
40 21 0.42
41 10 0.20
42 3 0.06
43 1 0.02
44 15 0.30
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (44 bp):
CGCACACTTAGTGCCATCTCAACTAGCCGAAACTAAGTTGAAAT
Found at i:44044847 original size:27 final size:27
Alignment explanation
Indices: 44044810--44045123 Score: 362
Period size: 27 Copynumber: 11.6 Consensus size: 27
44044800 TAAATTGTAC
*
44044810 AGCACTAAGTGTGCGTTTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
44044837 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
44044864 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
44044890 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
44044918 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
*
44044946 AGCACTAAGTGTGAGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
44044973 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
44044999 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
44045027 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
44045055 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
44045082 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
44045109 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
44045124 GACTCAATAT
Statistics
Matches: 246, Mismatches: 35, Indels: 12
0.84 0.12 0.04
Matches are distributed among these distances:
27 201 0.82
28 45 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:44044948 original size:109 final size:109
Alignment explanation
Indices: 44044811--44045123 Score: 522
Period size: 109 Copynumber: 2.9 Consensus size: 109
44044801 AAATTGTACA
*
44044811 GCACTAAGTGTGCG-TTTTGACTATGTAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTG
1 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTG
44044875 TGCGAAATGAATATGATGCACTAAGTGTGCGAATTGACCATGCG
66 TGCGAAATGAATATGATGCACTAAGTGTGCGAATTGACCATGCG
*
44044919 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGAGATTTGACTATGTTGCACTAAGTG
1 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTG
44044984 TGCGAAATGAATATGATGCACTAAGTGTGCGAATTGACCATGCG
66 TGCGAAATGAATATGATGCACTAAGTGTGCGAATTGACCATGCG
* * *
44045028 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTG
** * *
44045093 TGCGAGTTGATTAT-ATAGCACTGAGTGTGCG
66 TGCGAAATGAATATGAT-GCACTAAGTGTGCG
44045124 GACTCAATAT
Statistics
Matches: 193, Mismatches: 10, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
108 16 0.08
109 177 0.92
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (109 bp):
GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTG
TGCGAAATGAATATGATGCACTAAGTGTGCGAATTGACCATGCG
Found at i:44044983 original size:82 final size:81
Alignment explanation
Indices: 44044811--44045123 Score: 367
Period size: 82 Copynumber: 3.8 Consensus size: 81
44044801 AAATTGTACA
** *
44044811 GCACTAAGTGTGCGTTTTGACTATGTAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGT
1 GCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGT
** * *
44044876 GCGAAATGAATATGAT
66 GCGATTTGACTATGTT
* **
44044892 GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTG
1 GCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTG
*
44044957 TGAGATTTGACTATGTT
65 TGCGATTTGACTATGTT
* * * * **
44044974 GCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTG
1 GCACTAAGTGTGCGAATTGACTATGTA-GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTG
*
44045038 TGCGAGTTTGACTATGTA
65 TGCGA-TTTGACTATGTT
* * * * * * *
44045056 GCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGT
1 GCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGT
44045121 GCG
66 GCG
44045124 GACTCAATAT
Statistics
Matches: 196, Mismatches: 32, Indels: 7
0.83 0.14 0.03
Matches are distributed among these distances:
81 59 0.30
82 136 0.69
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGT
GCGATTTGACTATGTT
Found at i:44045133 original size:136 final size:136
Alignment explanation
Indices: 44044810--44045125 Score: 402
Period size: 136 Copynumber: 2.3 Consensus size: 136
44044800 TAAATTGTAC
* * * *
44044810 AGCACTAAGTGTGCGTTTTGACTATGTAGCACTAAGTGTGC-GATTTGACTATGTTGCACTAAGT
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGGA-ATGAATATGATGCACTAAGT
* * *
44044874 GTGCGAAATGAATATGATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTTG
65 GTGCGAAATGAACATGAGGCACTAAGTGTGCGAATTGACCATGCAGCACTAAGTGTGCGAGTTTG
*
44044939 ACTATGT
130 ACTACGT
* * *
44044946 AGCACTAAGTGTGAGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTG
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGGAATGAATATGATGCACTAAGTG
* * * * * *
44045011 TGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGA-TTTG
66 TGCGAAATGAACATGAGGCACTAAGTGTGCGA-ATTGACCATGCAGCACTAAGTGTGCGAGTTTG
*
44045075 ATTACGT
130 ACTACGT
* * * *
44045082 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCGGA
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGGA
44045126 CTCAATATAC
Statistics
Matches: 153, Mismatches: 25, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
136 129 0.84
137 24 0.16
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (136 bp):
AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGGAATGAATATGATGCACTAAGTG
TGCGAAATGAACATGAGGCACTAAGTGTGCGAATTGACCATGCAGCACTAAGTGTGCGAGTTTGA
CTACGT
Found at i:44052918 original size:27 final size:27
Alignment explanation
Indices: 44052881--44053194 Score: 380
Period size: 27 Copynumber: 11.6 Consensus size: 27
44052871 TAAATTGTAC
44052881 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
44052908 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
44052935 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
44052961 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
44052989 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
44053017 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
44053044 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
44053070 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
44053098 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
44053126 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
44053153 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
44053180 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
44053195 GACTCAATAT
Statistics
Matches: 249, Mismatches: 32, Indels: 12
0.85 0.11 0.04
Matches are distributed among these distances:
27 203 0.82
28 46 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:44053020 original size:109 final size:109
Alignment explanation
Indices: 44052882--44053194 Score: 540
Period size: 109 Copynumber: 2.9 Consensus size: 109
44052872 AAATTGTACA
44052882 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTG
1 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTG
44052946 TGCGAAATGAATATGATGCACTAAGTGTGCGAATTGACCATGCG
66 TGCGAAATGAATATGATGCACTAAGTGTGCGAATTGACCATGCG
44052990 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTG
1 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTG
44053055 TGCGAAATGAATATGATGCACTAAGTGTGCGAATTGACCATGCG
66 TGCGAAATGAATATGATGCACTAAGTGTGCGAATTGACCATGCG
* * *
44053099 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTG
** * *
44053164 TGCGAGTTGATTAT-ATAGCACTGAGTGTGCG
66 TGCGAAATGAATATGAT-GCACTAAGTGTGCG
44053195 GACTCAATAT
Statistics
Matches: 196, Mismatches: 7, Indels: 3
0.95 0.03 0.01
Matches are distributed among these distances:
108 17 0.09
109 179 0.91
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (109 bp):
GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTG
TGCGAAATGAATATGATGCACTAAGTGTGCGAATTGACCATGCG
Found at i:44053052 original size:82 final size:81
Alignment explanation
Indices: 44052882--44053194 Score: 385
Period size: 82 Copynumber: 3.8 Consensus size: 81
44052872 AAATTGTACA
* *
44052882 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGT
1 GCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGT
** * *
44052947 GCGAAATGAATATGAT
66 GCGATTTGACTATGTT
* **
44052963 GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTG
1 GCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTG
44053028 TGCGATTTGACTATGTT
65 TGCGATTTGACTATGTT
* * * * **
44053045 GCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTG
1 GCACTAAGTGTGCGAATTGACTATGTA-GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTG
*
44053109 TGCGAGTTTGACTATGTA
65 TGCGA-TTTGACTATGTT
* * * * * * *
44053127 GCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGT
1 GCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGT
44053192 GCG
66 GCG
44053195 GACTCAATAT
Statistics
Matches: 199, Mismatches: 29, Indels: 7
0.85 0.12 0.03
Matches are distributed among these distances:
81 61 0.31
82 137 0.69
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGT
GCGATTTGACTATGTT
Done.