Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 134 of 362
Found at i:44350839 original size:47 final size:47
Alignment explanation
Indices: 44350745--44351197 Score: 806
Period size: 47 Copynumber: 9.9 Consensus size: 47
44350735 CCTGTCACAT
44350745 ATATATACACTTTCACATTCATCACATCGGCCATTA-GCCTTAT-AC
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
44350790 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
44350837 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
44350884 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
44350931 ATATATA-ACTTTCACATTCATCACATC-GCCATTAGGCCTTATCAC
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
44350976 ATATATATACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
44351023 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
44351070 ATATAT-CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
44351116 ATATAT--A--TTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
44351159 ATATATACACTTTCACATTCAT--CATCGG-CATTA-GCCTTA
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
44351198 CTATATTTCA
Statistics
Matches: 399, Mismatches: 1, Indels: 18
0.95 0.00 0.04
Matches are distributed among these distances:
43 48 0.12
44 5 0.01
45 69 0.17
46 93 0.23
47 184 0.46
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
Found at i:44350861 original size:92 final size:94
Alignment explanation
Indices: 44350745--44351197 Score: 806
Period size: 92 Copynumber: 5.0 Consensus size: 94
44350735 CCTGTCACAT
44350745 ATATATACACTTTCACATTCATCACATCGGCCATTA-GCCTTAT-ACATATATACACTTTCACAT
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACAT
44350808 TCATCACATCGGCCATTAGGCCTTATCAC
66 TCATCACATCGGCCATTAGGCCTTATCAC
44350837 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACAT
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACAT
44350902 TCATCACATCGGCCATTAGGCCTTATCAC
66 TCATCACATCGGCCATTAGGCCTTATCAC
*
44350931 ATATATA-ACTTTCACATTCATCACATC-GCCATTAGGCCTTATCACATATATATACTTTCACAT
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACAT
44350994 TCATCACATCGGCCATTAGGCCTTATCAC
66 TCATCACATCGGCCATTAGGCCTTATCAC
44351023 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT-CACTTTCACAT
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACAT
44351087 TCATCACATCGGCCATTAGGCCTTATCAC
66 TCATCACATCGGCCATTAGGCCTTATCAC
44351116 ATATAT--A--TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACAT
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACAT
44351177 TCAT--CATCGG-CATTA-GCCTTA
66 TCATCACATCGGCCATTAGGCCTTA
44351198 CTATATTTCA
Statistics
Matches: 354, Mismatches: 2, Indels: 16
0.95 0.01 0.04
Matches are distributed among these distances:
86 6 0.02
87 5 0.01
88 6 0.02
89 42 0.12
90 15 0.04
91 1 0.00
92 107 0.30
93 92 0.26
94 80 0.23
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (94 bp):
ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACAT
TCATCACATCGGCCATTAGGCCTTATCAC
Found at i:44350898 original size:139 final size:140
Alignment explanation
Indices: 44350745--44351197 Score: 804
Period size: 139 Copynumber: 3.3 Consensus size: 140
44350735 CCTGTCACAT
44350745 ATATATACACTTTCACATTCATCACATCGGCCATTA-GCCTTAT-ACATATATACACTTTCACAT
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACAT
44350808 TCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA
66 TCATCACATCGGCCATTAGGCCTTATCACATATATA-ACTTTCACATTCATCACATCGGCCATTA
44350873 GGCCTTATCAC
130 GGCCTTATCAC
44350884 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA-ACTTTCACAT
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACAT
44350948 TCATCACATC-GCCATTAGGCCTTATCACATATATATACTTTCACATTCATCACATCGGCCATTA
66 TCATCACATCGGCCATTAGGCCTTATCACATATATA-ACTTTCACATTCATCACATCGGCCATTA
44351012 GGCCTTATCAC
130 GGCCTTATCAC
44351023 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT-CACTTTCACAT
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACAT
44351087 TCATCACATCGGCCATTAGGCCTTATCACATATAT-A--TTCACATTCATCACATCGGCCATTAG
66 TCATCACATCGGCCATTAGGCCTTATCACATATATAACTTTCACATTCATCACATCGGCCATTAG
44351149 GCCTTATCAC
131 GCCTTATCAC
44351159 ATATATACACTTTCACATTCAT--CATCGG-CATTA-GCCTTA
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
44351198 CTATATTTCA
Statistics
Matches: 309, Mismatches: 1, Indels: 15
0.95 0.00 0.05
Matches are distributed among these distances:
132 6 0.02
133 5 0.02
134 6 0.02
136 58 0.19
138 1 0.00
139 173 0.56
140 51 0.17
141 9 0.03
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (140 bp):
ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACAT
TCATCACATCGGCCATTAGGCCTTATCACATATATAACTTTCACATTCATCACATCGGCCATTAG
GCCTTATCAC
Found at i:44355146 original size:40 final size:39
Alignment explanation
Indices: 44355089--44355279 Score: 165
Period size: 40 Copynumber: 4.8 Consensus size: 39
44355079 CGAATACACG
* * **
44355089 TCACTAGCATGATTGCTCTTCGGGGTTTAGCACGGATATA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGC-CGGATATA
* * *
44355129 TCACTAGCACGAATGCTCTTTGGAACTTAGTCCGGATACA
1 TCACTAGCACGAATGCTCTTCGGGACTTAG-CCGGATATA
* *
44355169 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATTTA
1 TCACTAGCACGAATGCTCTTCGGGACTTAG-CCGGATATA
* * * *
44355209 GTAACTCGCAC-AATGC-CTTCGGGTCTTAGTCCGGATATGG
1 -TCACTAGCACGAATGCTCTTCGGGACTTAG-CCGGATAT-A
*
44355249 TCACTTAGCAC-AAAGC-CTTCGGGACTTAGCC
1 TCAC-TAGCACGAATGCTCTTCGGGACTTAGCC
44355280 TGGACATCAT
Statistics
Matches: 123, Mismatches: 24, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
39 24 0.20
40 91 0.74
41 8 0.07
ACGTcount: A:0.24, C:0.25, G:0.23, T:0.28
Consensus pattern (39 bp):
TCACTAGCACGAATGCTCTTCGGGACTTAGCCGGATATA
Found at i:44355253 original size:80 final size:80
Alignment explanation
Indices: 44355086--44355279 Score: 207
Period size: 80 Copynumber: 2.4 Consensus size: 80
44355076 GCCCGAATAC
* ** * * *
44355086 ACGTCACTAGCATGATTGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAATGCTCTTTG
1 ACGTCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATATAACTAGCACGAATGCTCTTCG
44355151 GAACTTAGTCCGGAT
66 GAACTTAGTCCGGAT
* * *
44355166 ACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATTTAGTAACTCGCAC-AATGC-CTTC
1 ACGTCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA-TAACTAGCACGAATGCTCTTC
**
44355229 GGGTCTTAGTCCGGAT
65 GGAACTTAGTCCGGAT
* * *
44355245 ATGGTCACTTAGCA-CAAAGC-CTTCGGGACTTAGCC
1 A-CGTCAC-TAGCATGAATGCTCTTCGGGACTTAGCC
44355280 TGGACATCAT
Statistics
Matches: 96, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
79 33 0.34
80 50 0.52
81 13 0.14
ACGTcount: A:0.24, C:0.25, G:0.23, T:0.28
Consensus pattern (80 bp):
ACGTCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATATAACTAGCACGAATGCTCTTCG
GAACTTAGTCCGGAT
Found at i:44355624 original size:29 final size:29
Alignment explanation
Indices: 44355582--44355662 Score: 103
Period size: 28 Copynumber: 2.8 Consensus size: 29
44355572 GTGCTTAAAA
*
44355582 TCAAACCACGCACACTTAGTGCCATGTACTT
1 TCAAACC-CGCACACTTAGTGCCATGCA-TT
*
44355613 T-AAACTCGCACACTTAGT-CCATGCATT
1 TCAAACCCGCACACTTAGTGCCATGCATT
*
44355640 TCAAGCCCGCACACTTAGTGCCA
1 TCAAACCCGCACACTTAGTGCCA
44355663 ATCATCACAA
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
27 3 0.07
28 21 0.48
29 15 0.34
30 4 0.09
31 1 0.02
ACGTcount: A:0.28, C:0.33, G:0.14, T:0.25
Consensus pattern (29 bp):
TCAAACCCGCACACTTAGTGCCATGCATT
Found at i:44355739 original size:43 final size:45
Alignment explanation
Indices: 44355644--44355748 Score: 187
Period size: 43 Copynumber: 2.4 Consensus size: 45
44355634 TGCATTTCAA
44355644 GCCCGCACACTTAGTGCCAATCATCACAACCGTGGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCATCACAACCGTGGAACACTTATT
44355689 GCCCGCACACTTAGTGCCAATC-TCACAACCGT-GAACACTTATT
1 GCCCGCACACTTAGTGCCAATCATCACAACCGTGGAACACTTATT
*
44355732 TCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
44355749 TGAAAACCAA
Statistics
Matches: 59, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
43 27 0.46
44 10 0.17
45 22 0.37
ACGTcount: A:0.27, C:0.35, G:0.15, T:0.23
Consensus pattern (45 bp):
GCCCGCACACTTAGTGCCAATCATCACAACCGTGGAACACTTATT
Found at i:44357225 original size:389 final size:373
Alignment explanation
Indices: 44356497--44357240 Score: 1133
Period size: 389 Copynumber: 2.0 Consensus size: 373
44356487 CTTACTATCG
44356497 AGTCCATTTAAAATTTCCAGGCAGTTGGCTAACTGCGACACTGTCACCTTAAAATCATATCTTGA
1 AGTCCATTTAAAATTTCCAGGCAGTTGGCTAACTGCGACACTGTCACCTTAAAATCATATCTTGA
44356562 GTTTCACAACTCGAAATCGTTTCAGTAATTTTTCCCTGAAATAGACTAATTGCCATCACATATTT
66 GTTTCACAACTCGAAATCGTTTCAGTAATTTTTCCCTGAAATAGACTAATTGCCATCACATATTT
*
44356627 TTTTCTAGAATTTTGGTAGGTCAATTAGTATAAGTTTATTAGTCAAGTCTCCCATGTTACAGGGA
131 TTTTCTAGAATTTTGGTAGGCCAATTAGTATAAGTTTATTAGTCAAGTCTCCCATGTTACAGGGA
**
44356692 TGACTACTGACCTTTACGCATTAACTTGGATATTCTCCTGCACAGGGCTTCAATACTGATTTCGT
196 TGACTACTGACCTTTACGCATTAACTTGGATATTCTCCTGCACAGGGCTTCAATACTGATGCCGT
***
44356757 TTGCTTCTATAGAAACTAGACTAGAGAGGAATGCCAGACATATTATTTCATGACTCTAATTATCT
261 TTGCTTCTATAGAAACTAGACTAGAGAGGAATGCCAGACATATTATGGAATGACTCTAATTATCT
44356822 CTGGTTAATTTATAATGAATTTCCAAAGTCGAAACGGAATCCCAGACGC
326 CTGGTTAATTTATAATGAATTTCC-AAGTCGAAACGGAATCCCAGACGC
44356871 AGTCCATTTTAAAAATTTTCCAGGCAGTTGGCTAACTGCGACACTGTCACCTTAAAAATCATATC
1 AGTCCA-TTT-AAAA-TTTCCAGGCAGTTGGCTAACTGCGACACTGTCACCTT-AAAATCATATC
*
44356936 TTGAG-TTCACAACTCGAAAATCAGTTTC-GTAATTTTTCCCTGAAACTAGACTCATATGCCCAT
62 TTGAGTTTCACAACTCG-AAATC-GTTTCAGTAATTTTTCCCTGAAA-TAGACTAAT-TG-CCAT
*
44356999 CTACATATTTTTTTCTAGAATTTTTGGTCAGGCCAATTAGTA-CAGTTTATTAGTCAAAGTCTCC
122 C-ACATATTTTTTTCTAGAA-TTTTGGT-AGGCCAATTAGTATAAGTTTATTAGTC-AAGTCTCC
*
44357063 CATGTTACAGGGATCGACTACACTGACCTTTGCGCATTACGACTTGGATA-TCTCCCTGCACA-G
183 CATGTTACAGGGAT-GACT--ACTGACCTTTACGCATTA--ACTTGGATATTCT-CCTGCACAGG
* *
44357126 GCTTCAATACTGATGCCGTTTGTTTCTATAGAAACTAGACTCAGAGAGGAAT-CCTATACATA-T
242 GCTTCAATACTGATGCCGTTTGCTTCTATAGAAACTAGACT-AGAGAGGAATGCC-AGACATATT
44357189 ATGGAATGACTCCTAATTATCTCTGGTTAATTTATAATGAATTTCCAAGTCG
305 ATGGAATGACT-CTAATTATCTCTGGTTAATTTATAATGAATTTCCAAGTCG
44357241 GAACAGGGAA
Statistics
Matches: 337, Mismatches: 11, Indels: 30
0.89 0.03 0.08
Matches are distributed among these distances:
374 6 0.02
375 3 0.01
376 4 0.01
377 48 0.14
378 38 0.11
379 13 0.04
380 2 0.01
381 5 0.01
382 18 0.05
383 19 0.06
384 34 0.10
385 4 0.01
387 17 0.05
388 59 0.18
389 67 0.20
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.34
Consensus pattern (373 bp):
AGTCCATTTAAAATTTCCAGGCAGTTGGCTAACTGCGACACTGTCACCTTAAAATCATATCTTGA
GTTTCACAACTCGAAATCGTTTCAGTAATTTTTCCCTGAAATAGACTAATTGCCATCACATATTT
TTTTCTAGAATTTTGGTAGGCCAATTAGTATAAGTTTATTAGTCAAGTCTCCCATGTTACAGGGA
TGACTACTGACCTTTACGCATTAACTTGGATATTCTCCTGCACAGGGCTTCAATACTGATGCCGT
TTGCTTCTATAGAAACTAGACTAGAGAGGAATGCCAGACATATTATGGAATGACTCTAATTATCT
CTGGTTAATTTATAATGAATTTCCAAGTCGAAACGGAATCCCAGACGC
Found at i:44358197 original size:37 final size:37
Alignment explanation
Indices: 44358147--44358225 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
44358137 TTATTACGAA
* * *
44358147 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
44358184 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
44358221 GTCTT
1 GTCTT
44358226 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:44358750 original size:49 final size:47
Alignment explanation
Indices: 44358343--44358914 Score: 1004
Period size: 47 Copynumber: 12.1 Consensus size: 47
44358333 CCCTTCGGGA
* * * * * *
44358343 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
44358390 CCTGTCACATATATACAC-TTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
44358436 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
44358483 C-TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
44358529 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
44358576 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
44358623 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
44358670 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
44358717 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
44358766 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
44358815 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
44358864 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
44358911 CTTA
1 CTTA
44358915 CTATCATTTC
Statistics
Matches: 511, Mismatches: 10, Indels: 8
0.97 0.02 0.02
Matches are distributed among these distances:
46 85 0.17
47 281 0.55
49 145 0.28
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:44362423 original size:40 final size:40
Alignment explanation
Indices: 44362337--44362452 Score: 135
Period size: 40 Copynumber: 2.9 Consensus size: 40
44362327 CGAATACACG
* * ** * *
44362337 TCACTAGCATGATTGCTCTTCGG-GTTTAGCACGGATATA
1 TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
* *
44362376 TCACTAGCACGAATGCTCTTTGGAACTTAGTCCGGATACA
1 TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
* *
44362416 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
1 TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGAT
44362453 TTAGTAACTC
Statistics
Matches: 64, Mismatches: 12, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
39 20 0.31
40 44 0.69
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.29
Consensus pattern (40 bp):
TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
Found at i:44362477 original size:40 final size:40
Alignment explanation
Indices: 44362354--44362527 Score: 117
Period size: 40 Copynumber: 4.4 Consensus size: 40
44362344 CATGATTGCT
* * *
44362354 CTTCGGG-TTTAGCACGGATATA-TCAC-TAGCACGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTTAGCAC-AATGC
* * * * * *
44362392 TCTTTGGAACTTAGTCCGGATACA-TCAC-TAGCATGAATGC
1 -CTTCGGGACTTAGCCCGGATATAGTAACTTAGCA-CAATGC
* *
44362432 TCTTCGGGACTTAGCCCGGATTTAGTAAC-TCGCACCAATGC
1 -CTTCGGGACTTAGCCCGGATATAGTAACTTAGCA-CAATGC
* * * * *
44362473 CTTCGGGTCTTAGTCCGGATATGGTCACTTAGCACAAAGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTTAGCACAATGC
44362513 CTTCGGGACTTAGCC
1 CTTCGGGACTTAGCC
44362528 GGACATCATT
Statistics
Matches: 106, Mismatches: 25, Indels: 7
0.77 0.18 0.05
Matches are distributed among these distances:
39 5 0.05
40 85 0.80
41 16 0.15
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.28
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTAACTTAGCACAATGC
Found at i:44362493 original size:80 final size:81
Alignment explanation
Indices: 44362337--44362527 Score: 203
Period size: 80 Copynumber: 2.4 Consensus size: 81
44362327 CGAATACACG
* * * * * *
44362337 TCACTAGCATGATTGCTCTTCGGG-TTTAGCACGGATATATCACTAGCACGAATGCTCTTTGGAA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATATAACTAGCACCAATGCTCTTCGGAA
44362401 CTTAGTCCGGATA-CA
66 CTTAGTCCGGATATCA
* * *
44362416 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACCAATGC-CTTCGGG
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA-TAACTAGCACCAATGCTCTTCGGA
* **
44362480 TCTTAGTCCGGATATGG
65 ACTTAGTCCGGATATCA
* *
44362497 TCACTTAGCA-CAAAGC-CTTCGGGACTTAGCC
1 TCAC-TAGCATGAATGCTCTTCGGGACTTAGCC
44362528 GGACATCATT
Statistics
Matches: 94, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
79 23 0.24
80 45 0.48
81 21 0.22
82 5 0.05
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.28
Consensus pattern (81 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATATAACTAGCACCAATGCTCTTCGGAA
CTTAGTCCGGATATCA
Found at i:44362874 original size:29 final size:29
Alignment explanation
Indices: 44362835--44362913 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
44362825 CTTAATAATC
*
44362835 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
44362865 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
44362894 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
44362914 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:44362956 original size:43 final size:43
Alignment explanation
Indices: 44362895--44362997 Score: 197
Period size: 43 Copynumber: 2.4 Consensus size: 43
44362885 TGCATTTCAA
44362895 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
44362938 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
*
44362981 TCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
44362998 TGAAAACCAA
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 59 1.00
ACGTcount: A:0.26, C:0.36, G:0.15, T:0.23
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:44364929 original size:36 final size:37
Alignment explanation
Indices: 44364857--44364934 Score: 113
Period size: 36 Copynumber: 2.1 Consensus size: 37
44364847 TTATTACGAA
* * *
44364857 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
44364894 GTCTTACCC-GACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
44364930 GTCTT
1 GTCTT
44364935 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
36 28 0.76
37 9 0.24
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:44365181 original size:47 final size:47
Alignment explanation
Indices: 44365052--44365578 Score: 878
Period size: 47 Copynumber: 11.1 Consensus size: 47
44365042 GCCCTTGGGA
* * * * * *
44365052 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
44365099 CCTGTCACATATATATACAC-TTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
44365147 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
44365194 CCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
44365243 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
44365290 CTTATCACATATATACACTTTCACATTCATCACATCAGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
44365337 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATT-GGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
44365385 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
44365432 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
44365481 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
44365528 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
44365575 CTTA
1 CTTA
44365579 CTATCATTTC
Statistics
Matches: 456, Mismatches: 14, Indels: 20
0.93 0.03 0.04
Matches are distributed among these distances:
46 45 0.10
47 235 0.52
48 40 0.09
49 136 0.30
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:44365264 original size:96 final size:94
Alignment explanation
Indices: 44365052--44365578 Score: 878
Period size: 96 Copynumber: 5.5 Consensus size: 94
44365042 GCCCTTGGGA
* * * * * * * *
44365052 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
44365117 AC-TTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
*
44365147 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
44365212 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
44365243 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
44365308 TTTCACATTCATCACATCAGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
44365337 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATT-GGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
44365401 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
44365432 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
44365497 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
44365528 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
44365579 CTATCATTTC
Statistics
Matches: 418, Mismatches: 10, Indels: 9
0.96 0.02 0.02
Matches are distributed among these distances:
94 89 0.21
95 154 0.37
96 175 0.42
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:44365470 original size:238 final size:238
Alignment explanation
Indices: 44365052--44365578 Score: 948
Period size: 238 Copynumber: 2.2 Consensus size: 238
44365042 GCCCTTGGGA
* * * * * * * *
44365052 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
44365117 ACTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
66 ACTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
44365182 CGGCCATTAGGCCCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
131 CGGCCATTAGGCCCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
44365247 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
196 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
44365290 CTTATCACATATATACACTTTCACATTCATCACATCAGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
44365355 ACTTTCACATTCATCACATCGGCCATT-GGCCTTATCACATATATACACTTTCACATTCATCACA
66 AC-TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
*
44365419 TCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
130 TCGGCCATTAGGCCCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
44365484 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
195 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
44365528 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
44365579 CTATCATTTC
Statistics
Matches: 277, Mismatches: 11, Indels: 2
0.96 0.04 0.01
Matches are distributed among these distances:
238 253 0.91
239 24 0.09
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (238 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
CGGCCATTAGGCCCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:44383020 original size:13 final size:13
Alignment explanation
Indices: 44382994--44383027 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
44382984 AATTAAGCAC
44382994 TTTTCACATAAAA
1 TTTTCACATAAAA
* *
44383007 TTTTCGCATGAAA
1 TTTTCACATAAAA
44383020 TTTTCACA
1 TTTTCACA
44383028 CAAACATAGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.35, C:0.18, G:0.06, T:0.41
Consensus pattern (13 bp):
TTTTCACATAAAA
Found at i:44387854 original size:27 final size:27
Alignment explanation
Indices: 44387803--44387856 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
44387793 ATCCCATACT
**
44387803 GATAAAATGACTGTTATACCCCTATGA
1 GATAAAATGACTAATATACCCCTATGA
* *
44387830 GATAAAATGACTAATATGCCTCTATGA
1 GATAAAATGACTAATATACCCCTATGA
44387857 TTTGTATGAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.17, G:0.15, T:0.30
Consensus pattern (27 bp):
GATAAAATGACTAATATACCCCTATGA
Found at i:44393229 original size:297 final size:298
Alignment explanation
Indices: 44392691--44393266 Score: 769
Period size: 297 Copynumber: 1.9 Consensus size: 298
44392681 TGTGGATGAA
* * * * *
44392691 ATAGTGAGACTGCATATGGTACCGGTTTCCATAATTTCTAATAGAGATCCTCGATTCACGTCTTG
1 ATAGTGAGACTACATAGGGTACCAGTTTCCATAATATCTAATAGAGATCCTCGATTAACGTCTTG
* *
44392756 ATTTTAGAAGAAGCTGCATGAAGCACTGGGGTACAAGGTTAGACTTCAGTACTGCATTCCATCCT
66 ATTTTAGAAAAAGCTGCACGAAGCACTGGGGTACAAGGTTAGACTTCAGTACTGCATTCCATCCT
* *
44392821 CAGACAGATTGTCAGTCAGAGAGGGTGATCCAGATACTGAAAGACATGTGAAGGAATTATGTAAT
131 CAGACAGATGGTCAGTCAGAGAGGGTGATCCAGAGACTGAAAGACATGTGAAGGAATTATGTAAT
* *
44392886 AGATTTTTGAGGCAGTTGGGAGGACTACTTGCCTCTAGTAGAGTTTGCGTATAACAATAGCTACC
196 AGATTTCTGAGGCAGTTGGGAGGACTACTTGCCGCTAGTAGAGTTTGCGTATAACAATAGCTACC
44392951 AGTCTAGCATACAAATGGCTAAATTGTATATGTCTGAG
261 AGTCTAGCATACAAATGGCTAAATTGTATATGTCTGAG
* * * *
44392989 ATAGTGAGACTACATAGGGTATCAGTTTCTATAATATCTAATAGAGATCCTCGTTTAATGTCTTG
1 ATAGTGAGACTACATAGGGTACCAGTTTCCATAATATCTAATAGAGATCCTCGATTAACGTCTTG
* * * * * * * *
44393054 GTTTTGGAAAAAGTTGCACGAGGC-TTTGGGTACAAGGTTGGACTTCAGTACTGCGTTCCATCCT
66 ATTTTAGAAAAAGCTGCACGAAGCACTGGGGTACAAGGTTAGACTTCAGTACTGCATTCCATCCT
* * * * * * * * * * *
44393118 CTA-ATAGATGGTCAGTTAGAGATGGTGATTCAGAGACTGGAGGACATTTTAAGGAGTTGTGTGA
131 C-AGACAGATGGTCAGTCAGAGAGGGTGATCCAGAGACTGAAAGACATGTGAAGGAATTATGTAA
* * * * **
44393182 TTGATTTCTGAGGCAGTTGGGAGGATTACTTGCCGCTAGTGGAGTTTGCTTATAACAATAGCTGT
195 TAGATTTCTGAGGCAGTTGGGAGGACTACTTGCCGCTAGTAGAGTTTGCGTATAACAATAGCTAC
44393247 CAGTCTAGCATACAAATGGC
260 CAGTCTAGCATACAAATGGC
44393267 ACCTTACAAG
Statistics
Matches: 237, Mismatches: 40, Indels: 3
0.85 0.14 0.01
Matches are distributed among these distances:
297 162 0.68
298 75 0.32
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.31
Consensus pattern (298 bp):
ATAGTGAGACTACATAGGGTACCAGTTTCCATAATATCTAATAGAGATCCTCGATTAACGTCTTG
ATTTTAGAAAAAGCTGCACGAAGCACTGGGGTACAAGGTTAGACTTCAGTACTGCATTCCATCCT
CAGACAGATGGTCAGTCAGAGAGGGTGATCCAGAGACTGAAAGACATGTGAAGGAATTATGTAAT
AGATTTCTGAGGCAGTTGGGAGGACTACTTGCCGCTAGTAGAGTTTGCGTATAACAATAGCTACC
AGTCTAGCATACAAATGGCTAAATTGTATATGTCTGAG
Found at i:44408743 original size:27 final size:27
Alignment explanation
Indices: 44408692--44408745 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
44408682 ATCCCATACT
**
44408692 GATAAAATGACTGTTATACCCCTATGA
1 GATAAAATGACTAATATACCCCTATGA
* *
44408719 GATAAAATGACTAATATGCCTCTATGA
1 GATAAAATGACTAATATACCCCTATGA
44408746 TTTGTATGAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.17, G:0.15, T:0.30
Consensus pattern (27 bp):
GATAAAATGACTAATATACCCCTATGA
Found at i:44414164 original size:297 final size:298
Alignment explanation
Indices: 44413626--44414201 Score: 760
Period size: 297 Copynumber: 1.9 Consensus size: 298
44413616 TGTGGATGAA
* * * *
44413626 ATAGTGAGACTGCATATGGTACCGGTTTCCATAATTTCTAATAGAGATCCTCGCTTCACGTCTTG
1 ATAGTGAGACTACATAGGGTACCGGTTTCCATAATATCTAATAGAGATCCTCGCTTAACGTCTTG
* *
44413691 ATTTTAGAAGAAGCTGCATGAAGCACTGGGGTACAAGGTTAGACTTCAGTACTGCATTCCATCCT
66 ATTTTAGAAAAAGCTGCACGAAGCACTGGGGTACAAGGTTAGACTTCAGTACTGCATTCCATCCT
* * * *
44413756 CAGACAGATTGTCAGTCAGAGAGGGTGATCCAGATACTGAAAGACATGTGAAGGAATTATGTAAT
131 CAGACAGATGGTCAGTCAGAGAAGGTAATCCAGAGACTGAAAGACATGTGAAGGAATTATGTAAT
* *
44413821 AGATTTTTGAGGCAGTTGGGAGGACTACTTGCCTCTAGTAGAGTTTGCGTATAACAATAGCTACC
196 AGATTTCTGAGGCAGTTGGGAGGACTACTTGCCGCTAGTAGAGTTTGCGTATAACAATAGCTACC
44413886 AGTCTAGCATACAGATGGCTAAACTGTATATGTCTGAG
261 AGTCTAGCATACAGATGGCTAAACTGTATATGTCTGAG
* * * * *
44413924 ATAGTGAGACTACATCGGGTATCGGTTTCTATAATATCTAATAGAGATCCTCGTTTAATGTCTTG
1 ATAGTGAGACTACATAGGGTACCGGTTTCCATAATATCTAATAGAGATCCTCGCTTAACGTCTTG
* * * * * * * *
44413989 GTTTTGGAAAAAGTTGCACGAGGC-TTTGGGTACAAGGTTGGACTTCAGTACTGCGTTCCATCCT
66 ATTTTAGAAAAAGCTGCACGAAGCACTGGGGTACAAGGTTAGACTTCAGTACTGCATTCCATCCT
* * * * * * * * * *
44414053 CTGATAGATGGTCAGTTAGAGAAGGTAATTCAGAGACT-AGAGGACATTTTAAGGAGTTGTGTGA
131 CAGACAGATGGTCAGTCAGAGAAGGTAATCCAGAGACTGA-AAGACATGTGAAGGAATTATGTAA
* * * * **
44414117 TTGATTTCTGAGGCAGTTGGGAGGATTACTTGCCGCTAGTGGAGTTTGCTTATAACAATAGCTGT
195 TAGATTTCTGAGGCAGTTGGGAGGACTACTTGCCGCTAGTAGAGTTTGCGTATAACAATAGCTAC
44414182 CAGTCTAGCATACAGATGGC
260 CAGTCTAGCATACAGATGGC
44414202 ACCTTACAAG
Statistics
Matches: 236, Mismatches: 41, Indels: 3
0.84 0.15 0.01
Matches are distributed among these distances:
296 1 0.00
297 161 0.68
298 74 0.31
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (298 bp):
ATAGTGAGACTACATAGGGTACCGGTTTCCATAATATCTAATAGAGATCCTCGCTTAACGTCTTG
ATTTTAGAAAAAGCTGCACGAAGCACTGGGGTACAAGGTTAGACTTCAGTACTGCATTCCATCCT
CAGACAGATGGTCAGTCAGAGAAGGTAATCCAGAGACTGAAAGACATGTGAAGGAATTATGTAAT
AGATTTCTGAGGCAGTTGGGAGGACTACTTGCCGCTAGTAGAGTTTGCGTATAACAATAGCTACC
AGTCTAGCATACAGATGGCTAAACTGTATATGTCTGAG
Found at i:44416497 original size:27 final size:27
Alignment explanation
Indices: 44416450--44416501 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
44416440 CCCATACTGA
*
44416450 TAAAATGACTGTTATAACCCTATGAGG
1 TAAAATGACTGATATAACCCTATGAGG
**
44416477 TAAAATGACTGATATGCCCCTATGA
1 TAAAATGACTGATATAACCCTATGA
44416502 TTTGTATAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.29
Consensus pattern (27 bp):
TAAAATGACTGATATAACCCTATGAGG
Found at i:44418405 original size:41 final size:40
Alignment explanation
Indices: 44418348--44418532 Score: 248
Period size: 40 Copynumber: 4.6 Consensus size: 40
44418338 TACTCGAATG
*
44418348 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
*
44418389 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
44418430 ACATCCGGACTAAGAT--CGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
44418469 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
44418509 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
44418533 CTTGTGCGAG
Statistics
Matches: 131, Mismatches: 10, Indels: 7
0.89 0.07 0.05
Matches are distributed among these distances:
38 1 0.01
39 19 0.15
40 57 0.44
41 53 0.40
42 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:44437496 original size:43 final size:43
Alignment explanation
Indices: 44437429--44437555 Score: 152
Period size: 44 Copynumber: 3.0 Consensus size: 43
44437419 CTCGTACAAC
* * *
44437429 GCCAACGTCTCAAACGTGGTCTTACATGTAATCACATATCGAT
1 GCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCGAT
* *
44437472 GCC-ACTGTCTCAGACAG-GGTCTTACACGTAAATCACAAATCGAT
1 GCCAAC-GTCCCAGAC-GTGGTCTTACACGT-AATCACATATCGAT
*
44437516 GCCAACGTCCCAGACGTGGTCTTACACG-AATCTCATATCG
1 GCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCG
44437556 GAATCCTATT
Statistics
Matches: 73, Mismatches: 6, Indels: 11
0.81 0.07 0.12
Matches are distributed among these distances:
42 12 0.16
43 23 0.32
44 36 0.49
45 2 0.03
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.24
Consensus pattern (43 bp):
GCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCGAT
Found at i:44438939 original size:36 final size:36
Alignment explanation
Indices: 44438899--44438974 Score: 152
Period size: 36 Copynumber: 2.1 Consensus size: 36
44438889 AACTAGTTAC
44438899 TATATGTCTGGTATTTGTTGTGTAATGATTTTTATA
1 TATATGTCTGGTATTTGTTGTGTAATGATTTTTATA
44438935 TATATGTCTGGTATTTGTTGTGTAATGATTTTTATA
1 TATATGTCTGGTATTTGTTGTGTAATGATTTTTATA
44438971 TATA
1 TATA
44438975 CTTGAATAAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 40 1.00
ACGTcount: A:0.24, C:0.03, G:0.18, T:0.55
Consensus pattern (36 bp):
TATATGTCTGGTATTTGTTGTGTAATGATTTTTATA
Found at i:44449231 original size:63 final size:62
Alignment explanation
Indices: 44449067--44449247 Score: 176
Period size: 63 Copynumber: 2.9 Consensus size: 62
44449057 AGACATTATG
* *
44449067 ATGTAGCTAGGTCGCATGGGTGATACT-ATGTGTACACCATGTAGACAAGAGA-CTAGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTGA-GTGTACACCATGTAGACAAGAGAGCTAGGATAA
* *
44449128 ATGTAGCTAGGTCGCATGCGTGGTTCCAGTGAAG-G-ACACCATGTAGACAAGAGAGCTACGAGA
1 ATGTAGCTAGGTCGCATGGGTGG-T--ACTG-AGTGTACACCATGTAGACAAGAGAGCTA-G-GA
44449191 TAAA
60 T-AA
* * *
44449195 AT-T-GCTAGGTCACATGGGTGGTACTGAGTGTTCACCATGTGGTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACTGAGTGTACACCATGTAG-ACAAGAGAGC
44449248 CGAACTATAT
Statistics
Matches: 99, Mismatches: 9, Indels: 21
0.77 0.07 0.16
Matches are distributed among these distances:
61 23 0.23
62 5 0.05
63 28 0.28
64 17 0.17
65 18 0.18
66 5 0.05
67 3 0.03
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.24
Consensus pattern (62 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTGAGTGTACACCATGTAGACAAGAGAGCTAGGATAA
Found at i:44450250 original size:16 final size:16
Alignment explanation
Indices: 44450229--44450259 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
44450219 ACTATGGTAT
*
44450229 ATGAAATATTGATATA
1 ATGAAATAATGATATA
44450245 ATGAAATAATGATAT
1 ATGAAATAATGATAT
44450260 GTGTTTATAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.00, G:0.13, T:0.35
Consensus pattern (16 bp):
ATGAAATAATGATATA
Found at i:44456487 original size:52 final size:52
Alignment explanation
Indices: 44456425--44456538 Score: 194
Period size: 52 Copynumber: 2.2 Consensus size: 52
44456415 AATGACATTA
*
44456425 TGCTAAGTGAAATAAG-ACCATGGCATCTAAGTGAAATAAGTCCATGGCAATG
1 TGCTAAGTGAAATAAGTA-CATGGCATCTAAGTGAAATAAGTCAATGGCAATG
*
44456477 TGCTAAGTGAAATAAGTACATGGCATCTAAGTGAAATAAGTCAATGGCATTG
1 TGCTAAGTGAAATAAGTACATGGCATCTAAGTGAAATAAGTCAATGGCAATG
44456529 TGCTAAGTGA
1 TGCTAAGTGA
44456539 GAAATTTCCA
Statistics
Matches: 59, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
52 58 0.98
53 1 0.02
ACGTcount: A:0.38, C:0.13, G:0.24, T:0.25
Consensus pattern (52 bp):
TGCTAAGTGAAATAAGTACATGGCATCTAAGTGAAATAAGTCAATGGCAATG
Found at i:44456491 original size:28 final size:25
Alignment explanation
Indices: 44456424--44456526 Score: 138
Period size: 24 Copynumber: 4.1 Consensus size: 25
44456414 AAATGACATT
*
44456424 ATGCTAAGTGAAATAAGACCATGGC
1 ATGCTAAGTGAAATAAGTCCATGGC
44456449 AT-CTAAGTGAAATAAGTCCATGGC
1 ATGCTAAGTGAAATAAGTCCATGGC
*
44456473 AATGTGCTAAGTGAAATAAGTACATGGC
1 -A--TGCTAAGTGAAATAAGTCCATGGC
*
44456501 AT-CTAAGTGAAATAAGTCAATGGC
1 ATGCTAAGTGAAATAAGTCCATGGC
44456525 AT
1 AT
44456527 TGTGCTAAGT
Statistics
Matches: 70, Mismatches: 4, Indels: 9
0.84 0.05 0.11
Matches are distributed among these distances:
24 43 0.61
25 4 0.06
27 2 0.03
28 21 0.30
ACGTcount: A:0.40, C:0.14, G:0.22, T:0.24
Consensus pattern (25 bp):
ATGCTAAGTGAAATAAGTCCATGGC
Found at i:44456617 original size:51 final size:51
Alignment explanation
Indices: 44456562--44456731 Score: 245
Period size: 51 Copynumber: 3.3 Consensus size: 51
44456552 TGAACCTTAG
*
44456562 GAATAAAATAGCTTTGGACACAAGTGTGGTACCATGTGAAGGCCA-TTCTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTT-TGT
* * * *
44456613 GAATATAATAGCTTTGGACACAAGTGTTGTACTATGTGTAGGCCACTTTGC
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
*
44456664 GAATAAAATAGCTTTGGACACAAGTGTGCTACTATGTGAAGGCCACTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
*
44456715 GAA-AACAATAGGTTTGG
1 GAATAA-AATAGCTTTGG
44456732 CTACAAGGGT
Statistics
Matches: 106, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
50 2 0.02
51 102 0.96
52 2 0.02
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.29
Consensus pattern (51 bp):
GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
Found at i:44469095 original size:41 final size:40
Alignment explanation
Indices: 44468926--44469102 Score: 206
Period size: 40 Copynumber: 4.5 Consensus size: 40
44468916 AAGCCAAGTA
* * *
44468926 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
44468964 CCTTCGGGACATAGCCC-GATATAGTAACTCGCATC-AATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCA-CAAATG
*
44469003 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
44469043 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCA-AAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACT--CGCACAAATG
44469084 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
44469103 TTATCATCCA
Statistics
Matches: 123, Mismatches: 8, Indels: 13
0.85 0.06 0.09
Matches are distributed among these distances:
37 1 0.01
38 24 0.20
39 25 0.20
40 46 0.37
41 24 0.20
42 3 0.02
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:44491689 original size:25 final size:25
Alignment explanation
Indices: 44491656--44491704 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
44491646 ATTAGTAGTG
*
44491656 ATTATGTGATGATTAAATATTTTTT
1 ATTACGTGATGATTAAATATTTTTT
44491681 ATTACGTGATGATTAAATATTTTT
1 ATTACGTGATGATTAAATATTTTT
44491705 CTAGTTAAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.33, C:0.02, G:0.12, T:0.53
Consensus pattern (25 bp):
ATTACGTGATGATTAAATATTTTTT
Found at i:44497553 original size:46 final size:46
Alignment explanation
Indices: 44497493--44497665 Score: 174
Period size: 46 Copynumber: 3.7 Consensus size: 46
44497483 TGGTTGAGCA
*
44497493 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
44497539 TCCAAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * * *
44497584 CATCCGAATTTGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*
44497632 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
44497666 GGGGCGGGTT
Statistics
Matches: 99, Mismatches: 19, Indels: 18
0.73 0.14 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 57 0.58
47 25 0.25
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:44515380 original size:98 final size:97
Alignment explanation
Indices: 44515205--44515382 Score: 241
Period size: 98 Copynumber: 1.8 Consensus size: 97
44515195 GGGATAAGAT
* * *
44515205 GCCGATGCCATGTCCCAGACATGGTCGTACACTGGCTAGCACATCAAAGTCGATGCCATGTCGCA
1 GCCGATGCCATGTCCCAGACATGGTCGTACACTGGCTAGCACATCAAAGCCGATACCATGTCCCA
*
44515270 GACAGGTTTTACACTAACTTTCATATATAGAG
66 GACAGGTCTTACACTAACTTTCATATATAGAG
* * ** **
44515302 GCCGATGCCTTGTCCCAGACA-GGTCTTACACTGGCTCTCATCTATCAGTGCCGATACCATGTCC
1 GCCGATGCCATGTCCCAGACATGGTCGTACACTGGCTAGCA-C-ATCAAAGCCGATACCATGTCC
44515366 CAGACAGGTCTTACACT
64 CAGACAGGTCTTACACT
44515383 GACACACAAC
Statistics
Matches: 69, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
96 16 0.23
97 21 0.30
98 32 0.46
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.25
Consensus pattern (97 bp):
GCCGATGCCATGTCCCAGACATGGTCGTACACTGGCTAGCACATCAAAGCCGATACCATGTCCCA
GACAGGTCTTACACTAACTTTCATATATAGAG
Found at i:44515383 original size:49 final size:49
Alignment explanation
Indices: 44515204--44515383 Score: 186
Period size: 49 Copynumber: 3.7 Consensus size: 49
44515194 TGGGATAAGA
* * *
44515204 TGCCGATGCCATGTCCCAGACATGGTCGTACACTGGCTAGCA-C-ATCAA
1 TGCCGATGCCATGTCCCAGACA-GGTCTTACACTGGCTATCATCTATCAG
* * * * ** * *
44515252 AGTCGATGCCATGTCGCAGACAGGTTTTACACTAACTTTCATATAT-AG
1 TGCCGATGCCATGTCCCAGACAGGTCTTACACTGGCTATCATCTATCAG
* * *
44515300 AGGCCGATGCCTTGTCCCAGACAGGTCTTACACTGGCTCTCATCTATCAG
1 -TGCCGATGCCATGTCCCAGACAGGTCTTACACTGGCTATCATCTATCAG
*
44515350 TGCCGATACCATGTCCCAGACAGGTCTTACACTG
1 TGCCGATGCCATGTCCCAGACAGGTCTTACACTG
44515384 ACACACAACA
Statistics
Matches: 105, Mismatches: 23, Indels: 7
0.78 0.17 0.05
Matches are distributed among these distances:
47 13 0.12
48 20 0.19
49 70 0.67
50 2 0.02
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.26
Consensus pattern (49 bp):
TGCCGATGCCATGTCCCAGACAGGTCTTACACTGGCTATCATCTATCAG
Found at i:44515470 original size:48 final size:47
Alignment explanation
Indices: 44515417--44515615 Score: 122
Period size: 46 Copynumber: 4.2 Consensus size: 47
44515407 TCTCAAATAG
44515417 GTCTTACACTAGCTTGTATATCTCGAAGTCGATGCATGTCCCAGACAT
1 GTCTTACACTAGC-TGTATATCTCGAAGTCGATGCATGTCCCAGACAT
* ** * ** *
44515465 GTCTTACACTAGCTCT-CGTCTC-AATATCGATAAATGTCCCAAACAT
1 GTCTTACACTAGCTGTATATCTCGAA-GTCGATGCATGTCCCAGACAT
* * * * * *** *
44515511 GTCTTACATTGGCTTGCATCTCTCGAGGAAAATGCATGTCCTAGACAT
1 GTCTTACACTAGC-TGTATATCTCGAAGTCGATGCATGTCCCAGACAT
* * * *
44515559 GTGTTACACTGGCTGTCATAATGT-G--G-CTGATGCATGTCCCAGGCAT
1 GTCTTACACTAGCTGT-AT-ATCTCGAAGTC-GATGCATGTCCCAGACAT
44515605 GTCTTACACTA
1 GTCTTACACTA
44515616 ACACACATGT
Statistics
Matches: 111, Mismatches: 33, Indels: 16
0.69 0.21 0.10
Matches are distributed among these distances:
45 2 0.02
46 57 0.51
47 5 0.05
48 44 0.40
49 3 0.03
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (47 bp):
GTCTTACACTAGCTGTATATCTCGAAGTCGATGCATGTCCCAGACAT
Found at i:44517275 original size:29 final size:27
Alignment explanation
Indices: 44517223--44517276 Score: 65
Period size: 29 Copynumber: 1.9 Consensus size: 27
44517213 TTAACATATT
*
44517223 TATAATGATTCATTTTCAATAAAATCA
1 TATAATGATTCAATTTCAATAAAATCA
44517250 TATAATAGCATTCAATTT-AATCAAAAT
1 TATAAT-G-ATTCAATTTCAAT-AAAAT
44517277 TATACATAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
27 6 0.26
28 4 0.17
29 13 0.57
ACGTcount: A:0.46, C:0.11, G:0.04, T:0.39
Consensus pattern (27 bp):
TATAATGATTCAATTTCAATAAAATCA
Found at i:44522615 original size:41 final size:44
Alignment explanation
Indices: 44522551--44522666 Score: 134
Period size: 45 Copynumber: 2.7 Consensus size: 44
44522541 TCTCATATCA
*
44522551 ATGCC-ACGTCCCAGACAGGGTCTTACACGAA-T-CA-AGTA-TG
1 ATGCCAACGTCCCAGACATGGTCTTACACGAACTACATA-TATTG
** * *
44522591 ATGCTGATGTCCCAGACATGGTCTTACATGTAACTACATATATTG
1 ATGCCAACGTCCCAGACATGGTCTTACACG-AACTACATATATTG
44522636 ATGCCAACGTCCCAGACATGGTCTTACACGA
1 ATGCCAACGTCCCAGACATGGTCTTACACGA
44522667 GAACATATAT
Statistics
Matches: 62, Mismatches: 8, Indels: 8
0.79 0.10 0.10
Matches are distributed among these distances:
40 4 0.06
41 21 0.34
42 2 0.03
43 1 0.02
44 5 0.08
45 29 0.47
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.25
Consensus pattern (44 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGAACTACATATATTG
Found at i:44524148 original size:29 final size:28
Alignment explanation
Indices: 44524091--44524192 Score: 89
Period size: 29 Copynumber: 3.6 Consensus size: 28
44524081 TACCTATATC
* *
44524091 TGGCCCATTAAG-CCTAATCATATTCATA
1 TGGCCCATTAAGCCCAAATCACATT-ATA
* *
44524119 TGGCCCATTAAGCCCGAATCACCTCTATA
1 TGGCCCATTAAGCCCAAATCACAT-TATA
* * * *
44524148 TTGTCCATTAGGCCCAAATCACATTTACA
1 TGGCCCATTAAGCCCAAATCACA-TTATA
*
44524177 TGGCCCATTAGGCCCA
1 TGGCCCATTAAGCCCA
44524193 GTCATATTCA
Statistics
Matches: 60, Mismatches: 11, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
28 12 0.20
29 46 0.77
30 2 0.03
ACGTcount: A:0.28, C:0.30, G:0.14, T:0.27
Consensus pattern (28 bp):
TGGCCCATTAAGCCCAAATCACATTATA
Found at i:44524285 original size:17 final size:18
Alignment explanation
Indices: 44524263--44524298 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
44524253 TTGCGTATTA
44524263 TGGGCCCA-ATAGCCCAT
1 TGGGCCCATATAGCCCAT
*
44524280 TGGGCCCATTTAGCCCAT
1 TGGGCCCATATAGCCCAT
44524298 T
1 T
44524299 CTGGCCTGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.19, C:0.33, G:0.22, T:0.25
Consensus pattern (18 bp):
TGGGCCCATATAGCCCAT
Found at i:44527109 original size:281 final size:280
Alignment explanation
Indices: 44526602--44527115 Score: 938
Period size: 281 Copynumber: 1.8 Consensus size: 280
44526592 TTCCACGTAA
*
44526602 CTCGCACCTACATACTTCCCCTGAGATGCTGCCTGAAAGAACTCCCATGTGACCCGCTCAGGTTG
1 CTCGCACCTACATACTTCCCCTGAGATGCTGCCTGAAAGAACTCCCACGTGACCCGCTCAGGTTG
44526667 GATGCCCTCTTTCACTGTTAGCCACCACTGGTAAGCTTCTTCCCTAAGTAGTGACACCACCCCTT
66 GATGCCCTCTTTCACTGTTAGCCACCACTGGTAAGCTTCTTCCCTAAGTAGTGACACCACCCCTT
* *
44526732 TCAGCTTTTGTTCAGGTGAATAGTCCAAATCCTCCATTATCCTTTCTGTGGCCTACAACCAGTAT
131 TCAGCTTTTGTTCAGGTGAACAGTCCAAATCCTCCATTATCCTTTCTGTGGCCTACAACCAATAT
*
44526797 TCAGCCACATTAGGAGCCACACCAGCCACGCCCTTAAAGATCTCATCCCCATTTGCACGAAGTCG
196 TCAGCCACATTAGGAGCCACACCAGCCACGCCCATAAAGATCTCATCCCCATTTGCACGAAGTCG
44526862 CTCCGGAATAACCCCGATTC
261 CTCCGGAATAACCCCGATTC
*
44526882 CTCGTCACCTACATACTTCCCCTGAGATGCTGCCTGAAAGAACTCCCGCGTGACCCGCTCAGGTT
1 CTCG-CACCTACATACTTCCCCTGAGATGCTGCCTGAAAGAACTCCCACGTGACCCGCTCAGGTT
* * *
44526947 GGATGCCCTCTTTCATTGTTAGCCACCATTGGTAAGCTTCTTCCCTAAGTAGTGACACCGCCCCT
65 GGATGCCCTCTTTCACTGTTAGCCACCACTGGTAAGCTTCTTCCCTAAGTAGTGACACCACCCCT
*
44527012 TTCAGTTTTTGTTCAGGTGAACAGTCCAAATCCTCCATTATCCTTTCTGTGGCCTACAACCAATA
130 TTCAGCTTTTGTTCAGGTGAACAGTCCAAATCCTCCATTATCCTTTCTGTGGCCTACAACCAATA
44527077 TTCAGCCACATTAGGAGCCACACCAGCCACGCCCATAAA
195 TTCAGCCACATTAGGAGCCACACCAGCCACGCCCATAAA
44527116 TCCTCGTGCC
Statistics
Matches: 224, Mismatches: 9, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
280 4 0.02
281 220 0.98
ACGTcount: A:0.23, C:0.33, G:0.17, T:0.26
Consensus pattern (280 bp):
CTCGCACCTACATACTTCCCCTGAGATGCTGCCTGAAAGAACTCCCACGTGACCCGCTCAGGTTG
GATGCCCTCTTTCACTGTTAGCCACCACTGGTAAGCTTCTTCCCTAAGTAGTGACACCACCCCTT
TCAGCTTTTGTTCAGGTGAACAGTCCAAATCCTCCATTATCCTTTCTGTGGCCTACAACCAATAT
TCAGCCACATTAGGAGCCACACCAGCCACGCCCATAAAGATCTCATCCCCATTTGCACGAAGTCG
CTCCGGAATAACCCCGATTC
Found at i:44528922 original size:29 final size:28
Alignment explanation
Indices: 44528859--44528973 Score: 106
Period size: 29 Copynumber: 4.0 Consensus size: 28
44528849 TTCACATACT
* * *
44528859 TGTATCTGGCCCATTAAGCCCAATCATA
1 TGTATATGGCCCATTAGGCCCAATCACA
*
44528887 T-TCATATGGCCCATTAGGCCCGAATCACC
1 TGT-ATATGGCCCATTAGGCCC-AATCACA
*
44528916 TGTATATTGCCCATTAGGCCCAAATCACA
1 TGTATATGGCCCATTAGGCCC-AATCACA
* * * * *
44528945 TTTATATAGCCCGTTAGGCCTAGTCACA
1 TGTATATGGCCCATTAGGCCCAATCACA
44528973 T
1 T
44528974 TCATATTCAT
Statistics
Matches: 72, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
27 1 0.01
28 24 0.33
29 46 0.64
30 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.29
Consensus pattern (28 bp):
TGTATATGGCCCATTAGGCCCAATCACA
Found at i:44529069 original size:18 final size:17
Alignment explanation
Indices: 44529037--44529072 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
44529027 TTGCCTATTA
44529037 TGGGCCCAATAGCCCAT
1 TGGGCCCAATAGCCCAT
*
44529054 TGGGCCCATTTAGCCCAT
1 TGGGCCCA-ATAGCCCAT
44529072 T
1 T
44529073 CTGGCCCGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.19, C:0.33, G:0.22, T:0.25
Consensus pattern (17 bp):
TGGGCCCAATAGCCCAT
Found at i:44529086 original size:19 final size:18
Alignment explanation
Indices: 44529037--44529087 Score: 59
Period size: 19 Copynumber: 2.8 Consensus size: 18
44529027 TTGCCTATTA
44529037 TGGGCCCA-ATAGCCCAT
1 TGGGCCCATATAGCCCAT
*
44529054 TGGGCCCATTTAGCCCAT
1 TGGGCCCATATAGCCCAT
* *
44529072 TCTGGCCCGTATAGCC
1 T-GGGCCCATATAGCC
44529088 AAATCACAAC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
17 8 0.29
18 9 0.32
19 11 0.39
ACGTcount: A:0.18, C:0.35, G:0.24, T:0.24
Consensus pattern (18 bp):
TGGGCCCATATAGCCCAT
Found at i:44531349 original size:14 final size:15
Alignment explanation
Indices: 44531332--44531360 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
44531322 ACACAAAAAT
44531332 TTCACACAT-ATAAA
1 TTCACACATAATAAA
44531346 TTCACACATAATAAA
1 TTCACACATAATAAA
44531361 CACTGAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:44535840 original size:48 final size:48
Alignment explanation
Indices: 44535788--44535909 Score: 156
Period size: 48 Copynumber: 2.5 Consensus size: 48
44535778 CAAACTGCTA
* * * ** *
44535788 ATATCATGGCCCGTAGCCAAATCAATG-AAGCTCGCACCTGAGGTGCCG
1 ATATCATGGCCCGAAGCCAAATCAATGTAA-CACACACCCAAAGTGCCG
* *
44535836 ATATCATGGCCTGAAGCCAAATCAAAGTAACACACACCCAAAGTGCCG
1 ATATCATGGCCCGAAGCCAAATCAATGTAACACACACCCAAAGTGCCG
44535884 ATATCATGGCCCGAAGCCAAATCAAT
1 ATATCATGGCCCGAAGCCAAATCAAT
44535910 ATATCCCCTA
Statistics
Matches: 63, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
48 61 0.97
49 2 0.03
ACGTcount: A:0.34, C:0.29, G:0.20, T:0.17
Consensus pattern (48 bp):
ATATCATGGCCCGAAGCCAAATCAATGTAACACACACCCAAAGTGCCG
Found at i:44538326 original size:46 final size:46
Alignment explanation
Indices: 44538234--44538363 Score: 172
Period size: 46 Copynumber: 2.8 Consensus size: 46
44538224 CATATTATGA
* *
44538234 AAGCCAGTGTAAGACCATGTCTGGGACATAGCATCGGCATTGAGACG-
1 AAGCCAATGTAAGA-CATGTCTGGGACAT-GCATCGGCATCGAGACGT
* *
44538281 AGAGCTAATGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGT
1 A-AGCCAATGTAAGACATGTCTGGGACATGCATCGGCATCGAGACGT
* *
44538328 AAGCCAATGTAAAACATGTCTGAGACATGCATCGGC
1 AAGCCAATGTAAGACATGTCTGGGACATGCATCGGC
44538364 TACGACATAA
Statistics
Matches: 74, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
46 47 0.64
47 16 0.22
48 11 0.15
ACGTcount: A:0.31, C:0.22, G:0.28, T:0.20
Consensus pattern (46 bp):
AAGCCAATGTAAGACATGTCTGGGACATGCATCGGCATCGAGACGT
Found at i:44538433 original size:47 final size:46
Alignment explanation
Indices: 44538241--44538450 Score: 178
Period size: 47 Copynumber: 4.5 Consensus size: 46
44538231 TGAAAGCCAG
* *
44538241 TGTAAGACCATGTCTGGGACATAGCATCGGCATTGAGACGA-GAGCTAA
1 TGTAAGACCATGTCTGGGACAT-GCATCGGC-TCGAGA-TATGAGCTAA
** * *
44538289 TGTAAGA-CATGTCTGGGACATGCATCGGCCTCGAGACGTAAGCCAA
1 TGTAAGACCATGTCTGGGACATGCATCGG-CTCGAGATATGAGCTAA
* * * *
44538335 TGTAA-AACATGTCTGAGACATGCATCGGCTACGACATAAT-AG-TCAG
1 TGTAAGACCATGTCTGGGACATGCATCGGCT-CGAGAT-ATGAGCT-AA
* * *
44538381 TGTAAGACCATGTCTGGGACATGGCATCGACTTGAGATATGAGCTAG
1 TGTAAGACCATGTCTGGGACAT-GCATCGGCTCGAGATATGAGCTAA
* *
44538428 CGTAAGACCATGTCTAGGACATG
1 TGTAAGACCATGTCTGGGACATG
44538451 GCATGGGCAC
Statistics
Matches: 134, Mismatches: 18, Indels: 22
0.77 0.10 0.13
Matches are distributed among these distances:
45 3 0.02
46 57 0.43
47 58 0.43
48 16 0.12
ACGTcount: A:0.30, C:0.20, G:0.27, T:0.22
Consensus pattern (46 bp):
TGTAAGACCATGTCTGGGACATGCATCGGCTCGAGATATGAGCTAA
Found at i:44539615 original size:20 final size:20
Alignment explanation
Indices: 44539577--44539615 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
44539567 TCGAGTTGGT
44539577 CACACGGGCATGTTGCCCTTC
1 CACACGGG-ATGTTGCCCTTC
44539598 CACACGGG-TGTGTGCCCT
1 CACACGGGATGT-TGCCCT
44539616 ATTTTAAGGT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 3 0.18
20 6 0.35
21 8 0.47
ACGTcount: A:0.13, C:0.36, G:0.28, T:0.23
Consensus pattern (20 bp):
CACACGGGATGTTGCCCTTC
Found at i:44543516 original size:39 final size:40
Alignment explanation
Indices: 44543424--44543650 Score: 358
Period size: 40 Copynumber: 5.8 Consensus size: 40
44543414 GGATATAGCT
* *
44543424 ACTCGCTCAAATGCCTTCGGGACATAGCCCGG-TTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATT-TAGTA
* *
44543464 ACTCGCACCAATGCCTTCGGGACTTAG-CCGGATTTGGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
*
44543503 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTGGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
44543543 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
44543583 ACTCG-ACAAATGCCTTC-GGACTTAGCCCGG--TTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
44543619 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
44543651 TTATCATCGA
Statistics
Matches: 177, Mismatches: 6, Indels: 10
0.92 0.03 0.05
Matches are distributed among these distances:
36 11 0.06
37 12 0.07
38 26 0.15
39 46 0.26
40 82 0.46
ACGTcount: A:0.23, C:0.29, G:0.24, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
Found at i:44543531 original size:79 final size:78
Alignment explanation
Indices: 44543398--44543647 Score: 355
Period size: 79 Copynumber: 3.2 Consensus size: 78
44543388 AAATCACGTA
* * * * * *
44543398 CCTTCGGAATTTAACCGGATATAGCT-ACTCGCTCAAATGCCTTCGGGACATAGCCCGGTTATAG
1 CCTTCGGGACTTAGCCGGATTTAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTT-TAG
*
44543462 TAACTCGCACCAATG
64 TAACTCGCACAAATG
* *
44543477 CCTTCGGGACTTAGCCGGATTTGGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTGGT
1 CCTTCGGGACTTAGCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG-TTTAGT
44543542 AACTCGCACAAATG
65 AACTCGCACAAATG
44543556 CCTTCGGGACTTAGCCCGGATTTAGTAACTCG-ACAAATGCCTTC-GGACTTAGCCCGG-TTAGT
1 CCTTCGGGACTTAG-CCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTTAGT
44543618 AACTCGCACAAATG
65 AACTCGCACAAATG
44543632 CCTTCGGGACTTAGCC
1 CCTTCGGGACTTAGCC
44543648 CGGTTATCAT
Statistics
Matches: 157, Mismatches: 11, Indels: 10
0.88 0.06 0.06
Matches are distributed among these distances:
75 2 0.01
76 32 0.20
78 14 0.09
79 91 0.58
80 18 0.11
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (78 bp):
CCTTCGGGACTTAGCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTTAGTA
ACTCGCACAAATG
Found at i:44551794 original size:40 final size:40
Alignment explanation
Indices: 44551521--44551792 Score: 420
Period size: 40 Copynumber: 6.8 Consensus size: 40
44551511 GGATATAGCT
* *
44551521 ACTCGCTCAAATGCCTTCGGGACATAGCCCGG-TTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATT-TAGTA
* *
44551561 ACTCGCACCAATGCCTTCGGGACTTAGCCCGGATTTGGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
*
44551601 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTGGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* *
44551641 ACTCGCACAACTGCCTTCGGGACTTAGCCCGGATTTGGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
*
44551681 ACTCGCACAAATGCCTTCGGGACTTAGCTCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* * *
44551721 ACACGCACAACTGCCTTCGGGACTTAGCCCGGTTTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
*
44551761 ACTCGCACAAATGCCTTCGGAACTTAGCCCGG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
44551793 TTATCATCCG
Statistics
Matches: 215, Mismatches: 16, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
40 213 0.99
41 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
Found at i:44556942 original size:68 final size:68
Alignment explanation
Indices: 44556792--44556949 Score: 160
Period size: 68 Copynumber: 2.3 Consensus size: 68
44556782 CTAGTCAATT
* * *
44556792 TATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACACATGCGACCTAGCTACA
1 TATCTCGTAGCTCTCTTGTCTACATGGTGTACATCAC-TCGAATCACACATGCGACCTAGCTACA
**
44556857 TTTA
65 CATA
* * *
44556861 TCTCTCCTGTAGCTCTCTTGTCTACATGG-GATACATC-C-CGTATCACACATGTGACCTAGCTA
1 TATCT-C-GTAGCTCTCTTGTCTACATGGTG-TACATCACTCGAATCACACATGCGACCTAGCTA
44556923 CTACATA
63 C-ACATA
*
44556930 GTATCTCGTAGCTTTCTTGT
1 -TATCTCGTAGCTCTCTTGT
44556950 ACACATGATG
Statistics
Matches: 74, Mismatches: 10, Indels: 11
0.78 0.11 0.12
Matches are distributed among these distances:
68 34 0.46
69 8 0.11
70 7 0.09
71 25 0.34
ACGTcount: A:0.21, C:0.28, G:0.16, T:0.35
Consensus pattern (68 bp):
TATCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTCGAATCACACATGCGACCTAGCTACAC
ATA
Found at i:44560077 original size:46 final size:45
Alignment explanation
Indices: 44559883--44560099 Score: 163
Period size: 46 Copynumber: 4.6 Consensus size: 45
44559873 ATTGTTGGCT
* * * *
44559883 AGTGTAAGACATGTTTGGGACATGCATCGGCCAC-ATTATGAGAGGC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTACGA-GACGAGA-GC
** *
44559929 AGTGTAAGACCATGTCTGGGACATGGCATCAAC-ATTGAGACGAGAGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTA-CGAGACGAGAGC
* * * *
44559976 TACTATAAGACGTGTCTGGGACATGCATCGGCCT-TGAGACGTA-AGCC
1 -AGTGTAAGACATGTCTGGGACATGCATCGG-CTACGAGACG-AGAG-C
* *
44560023 AGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGATAGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGACGAGAG-C
* *
44560069 AGTCTAAGACCATGTCTGGGGCATGGCATCG
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCG
44560100 ACTTGAGATA
Statistics
Matches: 139, Mismatches: 19, Indels: 24
0.76 0.10 0.13
Matches are distributed among these distances:
45 3 0.02
46 66 0.47
47 45 0.32
48 24 0.17
49 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.23
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGACGAGAGC
Found at i:44563297 original size:28 final size:27
Alignment explanation
Indices: 44563242--44563353 Score: 140
Period size: 27 Copynumber: 4.1 Consensus size: 27
44563232 AGCATGGCTG
* *
44563242 CCAGAACAGATAA-TGTGACAGAGTCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
*
44563268 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAATTGTGGCAGAGCCA
44563296 CCAGAACAGA-AATATGTGGCAGAGCCA
1 CCAGAACAGATAAT-TGTGGCAGAGCCA
*
44563323 CCA-AATCAGATAATTGTGGCATAGCCA
1 CCAGAA-CAGATAATTGTGGCAGAGCCA
44563350 CCAG
1 CCAG
44563354 GACGCTTCCT
Statistics
Matches: 75, Mismatches: 5, Indels: 10
0.83 0.06 0.11
Matches are distributed among these distances:
26 10 0.13
27 47 0.63
28 18 0.24
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.15
Consensus pattern (27 bp):
CCAGAACAGATAATTGTGGCAGAGCCA
Found at i:44564799 original size:24 final size:24
Alignment explanation
Indices: 44564780--44564837 Score: 116
Period size: 24 Copynumber: 2.4 Consensus size: 24
44564770 CTCTTATCTG
44564780 CTCCTAAATCCTATCCCTTATCAA
1 CTCCTAAATCCTATCCCTTATCAA
44564804 CTCCTAAATCCTATCCCTTATCAA
1 CTCCTAAATCCTATCCCTTATCAA
44564828 CTCCTAAATC
1 CTCCTAAATC
44564838 TTCTCCTGAC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.29, C:0.38, G:0.00, T:0.33
Consensus pattern (24 bp):
CTCCTAAATCCTATCCCTTATCAA
Found at i:44579070 original size:17 final size:17
Alignment explanation
Indices: 44579048--44579091 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 17
44579038 AAAAATATAA
44579048 TAATAATATAATAGTAG
1 TAATAATATAATAGTAG
** *
44579065 TAATAACGTAATAGTAT
1 TAATAATATAATAGTAG
*
44579082 TAAAAATATA
1 TAATAATATA
44579092 CGATATATAA
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.55, C:0.02, G:0.09, T:0.34
Consensus pattern (17 bp):
TAATAATATAATAGTAG
Found at i:44579326 original size:24 final size:26
Alignment explanation
Indices: 44579278--44579327 Score: 68
Period size: 24 Copynumber: 2.0 Consensus size: 26
44579268 CAATATTAAA
*
44579278 AATATATATATATAAAATGTATACAT
1 AATATATATATATAAAATATATACAT
*
44579304 AATATA-ATAT-TAAAATATTTACAT
1 AATATATATATATAAAATATATACAT
44579328 GGTATATACA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 12 0.55
25 4 0.18
26 6 0.27
ACGTcount: A:0.54, C:0.04, G:0.02, T:0.40
Consensus pattern (26 bp):
AATATATATATATAAAATATATACAT
Found at i:44579870 original size:39 final size:39
Alignment explanation
Indices: 44579827--44579907 Score: 144
Period size: 39 Copynumber: 2.1 Consensus size: 39
44579817 GCAAAAAAGC
*
44579827 TAATCCCACTCCCCCATGCTACTTTGTTTTATTATTAAT
1 TAATCCCACTCCCCCATGCCACTTTGTTTTATTATTAAT
*
44579866 TAATCCCATTCCCCCATGCCACTTTGTTTTATTATTAAT
1 TAATCCCACTCCCCCATGCCACTTTGTTTTATTATTAAT
44579905 TAA
1 TAA
44579908 AACCATATTT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.25, C:0.27, G:0.05, T:0.43
Consensus pattern (39 bp):
TAATCCCACTCCCCCATGCCACTTTGTTTTATTATTAAT
Found at i:44583907 original size:15 final size:15
Alignment explanation
Indices: 44583879--44583912 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
44583869 TTTTAGCTCA
44583879 AGAAGTTAAAAATTT
1 AGAAGTTAAAAATTT
44583894 AGAA-TTAAAGAATTT
1 AGAAGTTAAA-AATTT
44583909 AGAA
1 AGAA
44583913 AAAAACCATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 5 0.28
15 13 0.72
ACGTcount: A:0.56, C:0.00, G:0.15, T:0.29
Consensus pattern (15 bp):
AGAAGTTAAAAATTT
Found at i:44588987 original size:30 final size:30
Alignment explanation
Indices: 44588942--44589001 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
44588932 ATTTAATACG
*
44588942 AACTTTGGCAAAATTACATTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
* *
44588972 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
44589002 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.28, C:0.25, G:0.08, T:0.38
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:44596421 original size:30 final size:30
Alignment explanation
Indices: 44596385--44596445 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
44596375 CATTTAATAC
* *
44596385 AAACTTTGGCAAAATTATATTTTTGCCCCT
1 AAACTTTGGCAAAATTACACTTTTGCCCCT
* **
44596415 AAACTTTTGCGTAATTACACTTTTGCCCCT
1 AAACTTTGGCAAAATTACACTTTTGCCCCT
44596445 A
1 A
44596446 GGTTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.28, C:0.23, G:0.10, T:0.39
Consensus pattern (30 bp):
AAACTTTGGCAAAATTACACTTTTGCCCCT
Found at i:44607544 original size:49 final size:49
Alignment explanation
Indices: 44607393--44607572 Score: 168
Period size: 49 Copynumber: 3.7 Consensus size: 49
44607383 TGGGATAAGA
* * *
44607393 TGCCGATGCCATGTCCCAGACATGGTCGTACACTGGCTAGCA-C-ATCAA
1 TGCCGATGCCATGTCCCAGACA-GGTCTTACACTGGCTATCATCTATCAG
* * * * ** * *
44607441 AGTCGATGCCATGTCGCAGACAGGTTTTACACTAACTTTCATATAT-AG
1 TGCCGATGCCATGTCCCAGACAGGTCTTACACTGGCTATCATCTATCAG
* * *
44607489 AGGCCGATGCCTTGTCCCAGACAGGTCTTACACTGGCTCTCATCTATCAG
1 -TGCCGATGCCATGTCCCAGACAGGTCTTACACTGGCTATCATCTATCAG
* * *
44607539 TGCCGATACCATGTCCGAGATAGGTCTTACACTG
1 TGCCGATGCCATGTCCCAGACAGGTCTTACACTG
44607573 ACACACAACA
Statistics
Matches: 103, Mismatches: 25, Indels: 7
0.76 0.19 0.05
Matches are distributed among these distances:
47 13 0.13
48 20 0.19
49 68 0.66
50 2 0.02
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (49 bp):
TGCCGATGCCATGTCCCAGACAGGTCTTACACTGGCTATCATCTATCAG
Found at i:44609468 original size:29 final size:27
Alignment explanation
Indices: 44609415--44609481 Score: 68
Period size: 29 Copynumber: 2.4 Consensus size: 27
44609405 GTTAACATAT
*
44609415 TTATAAT-G-ATTCATTTTCAATAAAA
1 TTATAATAGTATTCAATTTCAATAAAA
44609440 TCATATAATAGTATTCAATTT-AATCAAAA
1 T--TATAATAGTATTCAATTTCAAT-AAAA
44609469 TTATACATAGTAT
1 TTATA-ATAGTAT
44609482 AGTTCATACA
Statistics
Matches: 35, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
25 1 0.03
27 10 0.29
28 11 0.31
29 13 0.37
ACGTcount: A:0.45, C:0.09, G:0.04, T:0.42
Consensus pattern (27 bp):
TTATAATAGTATTCAATTTCAATAAAA
Found at i:44614806 original size:41 final size:44
Alignment explanation
Indices: 44614742--44614857 Score: 125
Period size: 45 Copynumber: 2.7 Consensus size: 44
44614732 TCTCATATCA
* *
44614742 ATGCC-ACGTCCCAGAAAGGGTCTTACACGAA-T-CA-AGTA-TG
1 ATGCCAACGTCCCAGACATGGTCTTACACGAACTACATA-TATTG
** * *
44614782 ATGCTGATGTCCCAGACATGGTCTTACATGTAACTACATATATTG
1 ATGCCAACGTCCCAGACATGGTCTTACACG-AACTACATATATTG
44614827 ATGCCAACGTCCCAGACATGGTCTTACACGA
1 ATGCCAACGTCCCAGACATGGTCTTACACGA
44614858 GAACACATAT
Statistics
Matches: 61, Mismatches: 9, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
40 4 0.07
41 20 0.33
42 2 0.03
43 1 0.02
44 5 0.08
45 29 0.48
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.25
Consensus pattern (44 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGAACTACATATATTG
Found at i:44617776 original size:27 final size:26
Alignment explanation
Indices: 44617742--44617919 Score: 169
Period size: 27 Copynumber: 6.6 Consensus size: 26
44617732 AAAATTGTAC
44617742 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * *
44617769 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* *
44617795 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
*
44617823 GGCACTAAGTGTGCGAGTCTGACTATGT
1 AGCACTAAGTGTGCGA-T-TGACTATGT
* *
44617851 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* * *
44617878 GGCACTAAGTGTGCGAGTTGAATATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
44617905 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
44617920 GGCTCAATAT
Statistics
Matches: 125, Mismatches: 21, Indels: 10
0.80 0.13 0.06
Matches are distributed among these distances:
26 1 0.01
27 99 0.79
28 25 0.20
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.28
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:44617858 original size:82 final size:81
Alignment explanation
Indices: 44617743--44617898 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
44617733 AAATTGTACA
* * *
44617743 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
44617807 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
44617824 GCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
44617889 TGCGAGTTGA
65 TGCGAATTGA
44617899 ATATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 18 0.27
82 48 0.73
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:44617910 original size:82 final size:81
Alignment explanation
Indices: 44617739--44617919 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
44617729 ATTAAAATTG
* * *
44617739 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
*
44617804 GTGTGCGAATTGACCA
66 GTGTGCGAATTGAACA
* * ** *
44617820 TGCGGCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACT
1 TACAGCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* *
44617884 AAGTGTGCGAGTTGAATA
64 AAGTGTGCGAATTGAACA
* *
44617902 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
44617920 GGCTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 20 0.24
82 63 0.76
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGAACA
Found at i:44617928 original size:27 final size:27
Alignment explanation
Indices: 44617824--44617930 Score: 79
Period size: 27 Copynumber: 3.9 Consensus size: 27
44617814 TGACCATGCG
* * *
44617824 GCACTAAGTGTGCGAGTCTGACTATGTA
1 GCACTAAGTGTGCGAG-CTCAATATATA
** * * ** *
44617852 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
44617879 GCACTAAGTGTGCGAGTTGAATATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
44617906 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
44617931 CATTCGTGAA
Statistics
Matches: 65, Mismatches: 14, Indels: 1
0.81 0.17 0.01
Matches are distributed among these distances:
27 50 0.77
28 15 0.23
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:44619678 original size:29 final size:28
Alignment explanation
Indices: 44619612--44619722 Score: 71
Period size: 29 Copynumber: 3.9 Consensus size: 28
44619602 AAATCCACAT
* *
44619612 ACCTATATCTGGCCCATTAAG-CCTAATC
1 ACCT-TATATGGCCCATTAAGCCCAAATC
** *
44619640 ATATTCATATGGCCCATTAAGCCCGAATC
1 ACCTT-ATATGGCCCATTAAGCCCAAATC
* * *
44619669 ACCTCTATATTGTCCATTAGGCCCAAATC
1 ACCT-TATATGGCCCATTAAGCCCAAATC
* * * *
44619698 ACATTTACATGGCCCGTTAGGCCCA
1 AC-CTTATATGGCCCATTAAGCCCA
44619723 GTCATATTCA
Statistics
Matches: 64, Mismatches: 15, Indels: 7
0.74 0.17 0.08
Matches are distributed among these distances:
27 1 0.02
28 16 0.25
29 45 0.70
30 2 0.03
ACGTcount: A:0.28, C:0.31, G:0.14, T:0.28
Consensus pattern (28 bp):
ACCTTATATGGCCCATTAAGCCCAAATC
Found at i:44619815 original size:17 final size:18
Alignment explanation
Indices: 44619793--44619828 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
44619783 TTGCGTATTA
44619793 TGGGCCCA-ATAGCCCAT
1 TGGGCCCATATAGCCCAT
*
44619810 TGGGCCCATTTAGCCCAT
1 TGGGCCCATATAGCCCAT
44619828 T
1 T
44619829 CTGGCCTGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.19, C:0.33, G:0.22, T:0.25
Consensus pattern (18 bp):
TGGGCCCATATAGCCCAT
Found at i:44622639 original size:281 final size:281
Alignment explanation
Indices: 44622132--44622697 Score: 1008
Period size: 281 Copynumber: 2.0 Consensus size: 281
44622122 TTCCACGTAA
* *
44622132 CTCG-CACCTACATACTTCCCCTGAGATGTTGCCTGAAAGAACTCCCATGTGACCCGCTCAGGTT
1 CTCGTCACCTACATACTTCCCCTGAGATGCTGCCTGAAAGAACTCCCACGTGACCCGCTCAGGTT
44622196 GGATGCCCTCTTTCACTATTAGCCACCACTGGTAAGCTTCTTCCCTAAGTAGTGACACCACCCCT
66 GGATGCCCTCTTTCACTATTAGCCACCACTGGTAAGCTTCTTCCCTAAGTAGTGACACCACCCCT
44622261 TTCAGCTTTTGTTCAGGTGAACAGTCCAAATCCTCCATTATCCTTTCTGTGGCCTACAACCAGTA
131 TTCAGCTTTTGTTCAGGTGAACAGTCCAAATCCTCCATTATCCTTTCTGTGGCCTACAACCAGTA
* *
44622326 TTCAACCACATTAGGAGCCACACCAGCCACGCCCTTAAAGATCTCATCCCTATTTGCACGAAGTC
196 TTCAACCACATTAGGAGCCACACCAGCCACGCCCATAAAGATCTCATCCCCATTTGCACGAAGTC
*
44622391 GCTCCGGAATAACCTCGATTC
261 GCTCCGGAATAACCCCGATTC
44622412 CTCGTCACCTACATACTTCCCCTGAGATGCTGCCTGAAAGAACTCCCACGTGACCCGCTCAGGTT
1 CTCGTCACCTACATACTTCCCCTGAGATGCTGCCTGAAAGAACTCCCACGTGACCCGCTCAGGTT
* * * *
44622477 GGATGCCCTCTTTCATTGTTAGCCACCATTGGTAAGCTTCTTCCCTAAGTAGTGACACCGCCCCT
66 GGATGCCCTCTTTCACTATTAGCCACCACTGGTAAGCTTCTTCCCTAAGTAGTGACACCACCCCT
*
44622542 TTCAGTTTTTGTTCAGGTGAACAGTCCAAATCCTCCATTATCCTTTCTGTGGCCTACAACCAGTA
131 TTCAGCTTTTGTTCAGGTGAACAGTCCAAATCCTCCATTATCCTTTCTGTGGCCTACAACCAGTA
* *
44622607 TTCAGCCACATTAGGAGCCACACCAGCCACGCCCATAAAGATCTCATCCCCATTTGTACGAAGTC
196 TTCAACCACATTAGGAGCCACACCAGCCACGCCCATAAAGATCTCATCCCCATTTGCACGAAGTC
*
44622672 GCTCCGGAATACCCCCGATTC
261 GCTCCGGAATAACCCCGATTC
44622693 CTCGT
1 CTCGT
44622698 GCCATTATTG
Statistics
Matches: 272, Mismatches: 13, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
280 4 0.01
281 268 0.99
ACGTcount: A:0.23, C:0.33, G:0.17, T:0.27
Consensus pattern (281 bp):
CTCGTCACCTACATACTTCCCCTGAGATGCTGCCTGAAAGAACTCCCACGTGACCCGCTCAGGTT
GGATGCCCTCTTTCACTATTAGCCACCACTGGTAAGCTTCTTCCCTAAGTAGTGACACCACCCCT
TTCAGCTTTTGTTCAGGTGAACAGTCCAAATCCTCCATTATCCTTTCTGTGGCCTACAACCAGTA
TTCAACCACATTAGGAGCCACACCAGCCACGCCCATAAAGATCTCATCCCCATTTGCACGAAGTC
GCTCCGGAATAACCCCGATTC
Found at i:44624496 original size:29 final size:28
Alignment explanation
Indices: 44624433--44624547 Score: 106
Period size: 29 Copynumber: 4.0 Consensus size: 28
44624423 TTCACATACT
* * *
44624433 TGTATCTGGCCCATTAAGCCCAATCATA
1 TGTATATGGCCCATTAGGCCCAATCACA
*
44624461 T-TCATATGGCCCATTAGGCCCGAATCACC
1 TGT-ATATGGCCCATTAGGCCC-AATCACA
**
44624490 TGTATATTACCCATTAGGCCCAAATCACA
1 TGTATATGGCCCATTAGGCCC-AATCACA
* * * *
44624519 TTTATATAGCCCGTTAGGCCCAGTCACA
1 TGTATATGGCCCATTAGGCCCAATCACA
44624547 T
1 T
44624548 TCATATTCAT
Statistics
Matches: 71, Mismatches: 13, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
27 1 0.01
28 24 0.34
29 45 0.63
30 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.15, T:0.28
Consensus pattern (28 bp):
TGTATATGGCCCATTAGGCCCAATCACA
Found at i:44624633 original size:17 final size:18
Alignment explanation
Indices: 44624611--44624646 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
44624601 TTGCCTATTA
44624611 TGGGCCCA-ATAGCCCAT
1 TGGGCCCATATAGCCCAT
*
44624628 TGGGCCCATTTAGCCCAT
1 TGGGCCCATATAGCCCAT
44624646 T
1 T
44624647 CTGGCCCGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.19, C:0.33, G:0.22, T:0.25
Consensus pattern (18 bp):
TGGGCCCATATAGCCCAT
Found at i:44626927 original size:14 final size:15
Alignment explanation
Indices: 44626910--44626938 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
44626900 ACACAAAAAT
44626910 TTCACACAT-ATAAA
1 TTCACACATAATAAA
44626924 TTCACACATAATAAA
1 TTCACACATAATAAA
44626939 CACTGAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:44631428 original size:48 final size:47
Alignment explanation
Indices: 44631357--44631477 Score: 145
Period size: 48 Copynumber: 2.5 Consensus size: 47
44631347 CAAACTGCTA
* * * ** *
44631357 ATATCATGGCCGTAGCCAAATCAATG-AAGCTCGCACCTGAGGTGCCG
1 ATATCATGGCCGAAGCCAAATCAATGTAA-CACACACCCAAAGTGCCG
*
44631404 ATATCATGGCCTGAAGCCAAATCAAAGTAACACACACCCAAAGTGCCG
1 ATATCATGGCC-GAAGCCAAATCAATGTAACACACACCCAAAGTGCCG
44631452 ATATCATGGCCCGAAGCCAAATCAAT
1 ATATCATGG-CCGAAGCCAAATCAAT
44631478 ATATCCCCTA
Statistics
Matches: 63, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
47 11 0.17
48 48 0.76
49 4 0.06
ACGTcount: A:0.35, C:0.28, G:0.20, T:0.17
Consensus pattern (47 bp):
ATATCATGGCCGAAGCCAAATCAATGTAACACACACCCAAAGTGCCG
Found at i:44633867 original size:47 final size:46
Alignment explanation
Indices: 44633799--44633928 Score: 163
Period size: 46 Copynumber: 2.8 Consensus size: 46
44633789 CATATTATGA
* *
44633799 AAGCCAGTGTAAGACCATGTCTGGGACATAGCATCGGCATTGAGACG-
1 AAGCCAATGTAAGA-CATGTCTGGGACAT-GCATCGGCATCGAGACGT
* * *
44633846 AGAGCTAATGTAAGACATGTCTGGGACATGCATTGGCCTCGAGACGT
1 A-AGCCAATGTAAGACATGTCTGGGACATGCATCGGCATCGAGACGT
* *
44633893 AAGCCAATGTAAAACATGTCTGAGACATGCATCGGC
1 AAGCCAATGTAAGACATGTCTGGGACATGCATCGGC
44633929 TACGACATAA
Statistics
Matches: 72, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
46 45 0.62
47 16 0.22
48 11 0.15
ACGTcount: A:0.31, C:0.21, G:0.28, T:0.21
Consensus pattern (46 bp):
AAGCCAATGTAAGACATGTCTGGGACATGCATCGGCATCGAGACGT
Found at i:44635177 original size:20 final size:20
Alignment explanation
Indices: 44635139--44635177 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
44635129 TCGAGTTGGT
44635139 CACACGGGCATGTTGCCCTTC
1 CACACGGG-ATGTTGCCCTTC
44635160 CACACGGG-TGTGTGCCCT
1 CACACGGGATGT-TGCCCT
44635178 ATTTTAAGGT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 3 0.18
20 6 0.35
21 8 0.47
ACGTcount: A:0.13, C:0.36, G:0.28, T:0.23
Consensus pattern (20 bp):
CACACGGGATGTTGCCCTTC
Found at i:44641201 original size:43 final size:41
Alignment explanation
Indices: 44641116--44641232 Score: 119
Period size: 43 Copynumber: 2.8 Consensus size: 41
44641106 GTCTGAGACA
* *
44641116 TCGTATAAGACCGTGTCTGGGACACAGGCGTCGATTGAGATT
1 TCGTATAAGACCATGTCTGGGACACAGGCATCGATT-AGATT
**
44641158 TACGTATAAGACCATGTCTGGGACATTGGCATCGTATCT-GATT
1 T-CGTATAAGACCATGTCTGGGACACAGGCATCG-AT-TAGATT
* * * *
44641201 TCATGTAAGACCCTGTCTGGGACAGAGGCATC
1 TCGTATAAGACCATGTCTGGGACACAGGCATC
44641233 TATATGAATT
Statistics
Matches: 63, Mismatches: 9, Indels: 6
0.81 0.12 0.08
Matches are distributed among these distances:
42 27 0.43
43 33 0.52
44 2 0.03
45 1 0.02
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (41 bp):
TCGTATAAGACCATGTCTGGGACACAGGCATCGATTAGATT
Found at i:44641231 original size:42 final size:41
Alignment explanation
Indices: 44641121--44641265 Score: 114
Period size: 42 Copynumber: 3.4 Consensus size: 41
44641111 AGACATCGTA
* * * *
44641121 TAAGACCGTGTCTGGGACACAGGCGTCG-ATTGAGATTTACGTA
1 TAAGACCATGTCTGGGACACAGGCATCGTATT--GATTT-CATG
**
44641164 TAAGACCATGTCTGGGACATTGGCATCGTATCTGATTTCATG
1 TAAGACCATGTCTGGGACACAGGCATCGTAT-TGATTTCATG
* * *
44641206 TAAGACCCTGTCTGGGACAGAGGCATC-TATATGAATTACATG
1 TAAGACCATGTCTGGGACACAGGCATCGTAT-TG-ATTTCATG
* * *
44641248 CAAGACCACGTCCGGGAC
1 TAAGACCATGTCTGGGAC
44641266 GTCGGCATTG
Statistics
Matches: 84, Mismatches: 15, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
41 5 0.06
42 47 0.56
43 29 0.35
44 2 0.02
45 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (41 bp):
TAAGACCATGTCTGGGACACAGGCATCGTATTGATTTCATG
Found at i:44642698 original size:27 final size:27
Alignment explanation
Indices: 44642664--44642754 Score: 112
Period size: 27 Copynumber: 3.4 Consensus size: 27
44642654 ATTACCAAAG
* * *
44642664 TACCCTCGATTTATAGAATTATCGTTT
1 TACCCTCGATTTAAAAAATTACCGTTT
* *
44642691 TACACTCGATTTAAAAAATTACCATTT
1 TACCCTCGATTTAAAAAATTACCGTTT
* *
44642718 TACCCTC-AGTTACAAAATTACCGTTT
1 TACCCTCGATTTAAAAAATTACCGTTT
44642744 TACCCTCGATT
1 TACCCTCGATT
44642755 GTGAAATTAC
Statistics
Matches: 53, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
26 23 0.43
27 30 0.57
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (27 bp):
TACCCTCGATTTAAAAAATTACCGTTT
Found at i:44642761 original size:26 final size:25
Alignment explanation
Indices: 44642664--44642764 Score: 87
Period size: 26 Copynumber: 3.8 Consensus size: 25
44642654 ATTACCAAAG
*
44642664 TACCCTCGATTTATAGAATTATCGTTT
1 TACCCTCGATTTA-A-AATTACCGTTT
* *
44642691 TACACTCGATTTAAAAAATTACCATTT
1 TACCCTCGATTT--AAAATTACCGTTT
*
44642718 TACCCTC-AGTTACAAAATTACCGTTT
1 TACCCTCGA-TT-TAAAATTACCGTTT
*
44642744 TACCCTCGATTGTGAAATTAC
1 TACCCTCGATT-TAAAATTAC
44642765 TGAAATACCC
Statistics
Matches: 60, Mismatches: 9, Indels: 11
0.75 0.11 0.14
Matches are distributed among these distances:
26 29 0.48
27 29 0.48
28 1 0.02
29 1 0.02
ACGTcount: A:0.32, C:0.22, G:0.09, T:0.38
Consensus pattern (25 bp):
TACCCTCGATTTAAAATTACCGTTT
Found at i:44642825 original size:54 final size:54
Alignment explanation
Indices: 44642753--44642908 Score: 154
Period size: 54 Copynumber: 2.9 Consensus size: 54
44642743 TTACCCTCGA
** * *
44642753 TTGTGAAATTACTGAAATACCCCT-GTAGGATAGAATTACCAAAATACCCCTAGT
1 TTGTGAAATTACCAAAATACCCCTAGTAGG-TAAAATTACCAAAATACCACTAGT
* ** ** * *
44642807 TTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACTGAAATACCATTGGT
1 TTGTGAAATTACCAAAATACCCCTAGTAGGTAAAATTACCAAAATACCACTAGT
* **
44642861 TTGTGAAATTACCAAAATA-CCCTCAATTTGTAAAATTACCAAAATACC
1 TTGTGAAATTACCAAAATACCCCT-AGTAGGTAAAATTACCAAAATACC
44642909 CTTGATTTAC
Statistics
Matches: 85, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
53 4 0.05
54 78 0.92
55 3 0.04
ACGTcount: A:0.40, C:0.19, G:0.11, T:0.30
Consensus pattern (54 bp):
TTGTGAAATTACCAAAATACCCCTAGTAGGTAAAATTACCAAAATACCACTAGT
Found at i:44642852 original size:81 final size:81
Alignment explanation
Indices: 44642753--44642909 Score: 212
Period size: 81 Copynumber: 1.9 Consensus size: 81
44642743 TTACCCTCGA
* * *
44642753 TTGTGAAATTACTGAAATACCCCT-GTAGGAT-AGAATTACCAAAATACCC-CTAGTTTGTAAAA
1 TTGTAAAATTACTGAAATACCACTGGTAGG-TGA-AATTACCAAAATACCCTC-AATTTGTAAAA
44642815 TTACCAAAATACCCCTAGT
63 TTACCAAAATACCCCTAGT
* **
44642834 TTGTAAAATTACTGAAATACCATTGGTTTGTGAAATTACCAAAATACCCTCAATTTGTAAAATTA
1 TTGTAAAATTACTGAAATACCACTGGTAGGTGAAATTACCAAAATACCCTCAATTTGTAAAATTA
44642899 CCAAAATACCC
66 CCAAAATACCC
44642910 TTGATTTACA
Statistics
Matches: 67, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
81 62 0.93
82 5 0.07
ACGTcount: A:0.39, C:0.20, G:0.11, T:0.30
Consensus pattern (81 bp):
TTGTAAAATTACTGAAATACCACTGGTAGGTGAAATTACCAAAATACCCTCAATTTGTAAAATTA
CCAAAATACCCCTAGT
Found at i:44642923 original size:81 final size:82
Alignment explanation
Indices: 44642786--44642964 Score: 231
Period size: 81 Copynumber: 2.2 Consensus size: 82
44642776 TGTAGGATAG
* ** **
44642786 AATTACCAAAATACCC-CTAGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACTGAA
1 AATTACCAAAATACCCTCTAATTTGTAAAATTACCAAAATACCCCTAGTTTACAAAATTACAAAA
44642850 ATACCATTGGTTTGTGA-
66 ATACCATTGGTTTGT-AT
*
44642867 AATTACCAAAATACCCTC-AATTTGTAAAATTACCAAAATA-CCCTTGATTTACAAAATTACAAA
1 AATTACCAAAATACCCTCTAATTTGTAAAATTACCAAAATACCCCTAG-TTTACAAAATTACAAA
*
44642930 AATACCCTTGGTTTGTAT
65 AATACCATTGGTTTGTAT
* *
44642948 ATTTACCAAAACACCCT
1 AATTACCAAAATACCCT
44642965 TGTAGGATGA
Statistics
Matches: 86, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
80 6 0.07
81 79 0.92
82 1 0.01
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31
Consensus pattern (82 bp):
AATTACCAAAATACCCTCTAATTTGTAAAATTACCAAAATACCCCTAGTTTACAAAATTACAAAA
ATACCATTGGTTTGTAT
Found at i:44642964 original size:27 final size:27
Alignment explanation
Indices: 44642786--44642966 Score: 200
Period size: 27 Copynumber: 6.7 Consensus size: 27
44642776 TGTAGGATAG
* *
44642786 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCTTGGTTTGTAA
* *
44642813 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCTTGGTTTGTAA
** * *
44642840 AATTACTGAAATACCATTGGTTTGTGA
1 AATTACCAAAATACCCTTGGTTTGTAA
***
44642867 AATTACCAAAATACCCTCAATTTGTAA
1 AATTACCAAAATACCCTTGGTTTGTAA
* **
44642894 AATTACCAAAATACCCTTGATTTACAA
1 AATTACCAAAATACCCTTGGTTTGTAA
* *
44642921 AATTACAAAAATACCCTTGGTTTGTAT
1 AATTACCAAAATACCCTTGGTTTGTAA
* *
44642948 ATTTACCAAAACACCCTTG
1 AATTACCAAAATACCCTTG
44642967 TAGGATGAAA
Statistics
Matches: 129, Mismatches: 25, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 129 1.00
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.31
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGGTTTGTAA
Found at i:44643910 original size:25 final size:24
Alignment explanation
Indices: 44643871--44643937 Score: 89
Period size: 25 Copynumber: 2.7 Consensus size: 24
44643861 AGGAAGTGCT
** *
44643871 AAAAGGGCTCCGCCCCAGTTTACTG
1 AAAAGGGCTTTGCCCCAGTTTA-TC
44643896 AAAAGGGCTTTGCCCCAGTTTATC
1 AAAAGGGCTTTGCCCCAGTTTATC
44643920 AGAAAGGGCTTTGCCCCA
1 A-AAAGGGCTTTGCCCCA
44643938 ATTATTAAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
24 2 0.05
25 36 0.95
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.22
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTATC
Found at i:44643953 original size:24 final size:24
Alignment explanation
Indices: 44643871--44643953 Score: 78
Period size: 25 Copynumber: 3.4 Consensus size: 24
44643861 AGGAAGTGCT
** * *
44643871 AAAAGGGCTCCGCCCCAGTTTACTG
1 AAAAGGGCTTTGCCCCAGATTA-TC
*
44643896 AAAAGGGCTTTGCCCCAGTTTATC
1 AAAAGGGCTTTGCCCCAGATTATC
*
44643920 AGAAAGGGCTTTGCCCCA-ATTATT
1 A-AAAGGGCTTTGCCCCAGATTATC
44643944 AAAAGAGGCT
1 AAAAG-GGCT
44643954 AGGCCTCCAG
Statistics
Matches: 51, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
23 4 0.08
24 11 0.22
25 36 0.71
ACGTcount: A:0.29, C:0.24, G:0.23, T:0.24
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGATTATC
Found at i:44644153 original size:42 final size:42
Alignment explanation
Indices: 44644088--44644175 Score: 149
Period size: 42 Copynumber: 2.1 Consensus size: 42
44644078 TAGTCTCCCC
* *
44644088 AAATGGGCTTGCAGACATTCATTGACATTACATGTGATATTG
1 AAATAGGCTTGCAGACATCCATTGACATTACATGTGATATTG
*
44644130 AAATAGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATAGGCTTGCAGACATCCATTGACATTACATGTGATATTG
44644172 AAAT
1 AAAT
44644176 GGGCCTAAGG
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.34, C:0.15, G:0.18, T:0.33
Consensus pattern (42 bp):
AAATAGGCTTGCAGACATCCATTGACATTACATGTGATATTG
Found at i:44644239 original size:31 final size:31
Alignment explanation
Indices: 44644203--44644300 Score: 169
Period size: 31 Copynumber: 3.2 Consensus size: 31
44644193 CGTTTATGGT
44644203 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
44644234 AAAGGCTTCGGCCCAATGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* *
44644265 AAAGGCTTCGGCCTAGTGATATGATTTATGG
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
44644296 AAAGG
1 AAAGG
44644301 ATTCAGCCAG
Statistics
Matches: 63, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 63 1.00
ACGTcount: A:0.31, C:0.14, G:0.27, T:0.29
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:44650636 original size:28 final size:28
Alignment explanation
Indices: 44650596--44650674 Score: 86
Period size: 28 Copynumber: 2.8 Consensus size: 28
44650586 GCAATGAAAT
* * *
44650596 ATGGTACTCAGTGTATGAAATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
* *
44650624 ATGGCACTTAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
* * *
44650652 ATGACACTTAGTGTGCAAAATAT
1 ATGGCACTTAGTGTACGAAATAT
44650675 CGAACGATTC
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 43 1.00
ACGTcount: A:0.34, C:0.10, G:0.25, T:0.30
Consensus pattern (28 bp):
ATGGCACTTAGTGTACGAAATATTGAGA
Found at i:44655231 original size:40 final size:40
Alignment explanation
Indices: 44654999--44655229 Score: 376
Period size: 40 Copynumber: 5.8 Consensus size: 40
44654989 GGATATAGCT
* *
44654999 ACTCGCTCAAATGCCTTCGGGACATAGCCCGG-TTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATT-TAGTA
* *
44655039 ACTCGCACCAATGCCTTCGGGACTTAGCCCGGATTTGGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
*
44655079 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTGGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
44655119 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* *
44655159 ACTCG-ACAAATGCCTTCTGGACTTAGCCCGGTTTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
44655198 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
44655230 TTATCATCCG
Statistics
Matches: 180, Mismatches: 9, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
39 37 0.21
40 141 0.78
41 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.23, T:0.25
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
Found at i:44663354 original size:77 final size:79
Alignment explanation
Indices: 44663111--44663375 Score: 416
Period size: 77 Copynumber: 3.4 Consensus size: 79
44663101 GGATATAGCT
* * *
44663111 ACTCGCTC-AATGCCTTCGGGACATAGCCC-G-TTATAGTAACTCGCACCAATGCCTTCGGGACT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACAAATGCCTTC-GGACT
44663173 TAGCCCGGATTTGGTA
64 TAGCCCGGATTTGGTA
*
44663189 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTGGTAACTCGCACAAATGCCTTCGGACTTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGACTTA
44663254 GCCCGGATTTGGTA
66 GCCCGGATTTGGTA
44663268 ACTCGCACAAATGCCTTC-GGACTTAGCCCGGATTTAGTAAC-CGCACAAATGCCTTCGGACTTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGACTTA
* *
44663331 GCCCGGTTTTAGTA
66 GCCCGGATTTGGTA
44663345 ACTCGCACAAATGCCTTC-GGACTTAGCCCGG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
44663376 TTATCATCCG
Statistics
Matches: 177, Mismatches: 7, Indels: 7
0.93 0.04 0.04
Matches are distributed among these distances:
77 65 0.37
78 29 0.16
79 59 0.33
80 22 0.12
81 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.23, T:0.25
Consensus pattern (79 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGACTTA
GCCCGGATTTGGTA
Found at i:44663377 original size:39 final size:39
Alignment explanation
Indices: 44663111--44663375 Score: 403
Period size: 39 Copynumber: 6.8 Consensus size: 39
44663101 GGATATAGCT
* *
44663111 ACTCGCTC-AATGCCTTCGGGACATAGCCC-G-TTATAGTA
1 ACTCGCACAAATGCCTTC-GGACTTAGCCCGGATT-TAGTA
* *
44663149 ACTCGCACCAATGCCTTCGGGACTTAGCCCGGATTTGGTA
1 ACTCGCACAAATGCCTTC-GGACTTAGCCCGGATTTAGTA
*
44663189 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTGGTA
1 ACTCGCACAAATGCCTTC-GGACTTAGCCCGGATTTAGTA
*
44663229 ACTCGCACAAATGCCTTCGGACTTAGCCCGGATTTGGTA
1 ACTCGCACAAATGCCTTCGGACTTAGCCCGGATTTAGTA
44663268 ACTCGCACAAATGCCTTCGGACTTAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGACTTAGCCCGGATTTAGTA
*
44663307 AC-CGCACAAATGCCTTCGGACTTAGCCCGGTTTTAGTA
1 ACTCGCACAAATGCCTTCGGACTTAGCCCGGATTTAGTA
44663345 ACTCGCACAAATGCCTTCGGACTTAGCCCGG
1 ACTCGCACAAATGCCTTCGGACTTAGCCCGG
44663376 TTATCATCCG
Statistics
Matches: 217, Mismatches: 6, Indels: 7
0.94 0.03 0.03
Matches are distributed among these distances:
38 44 0.20
39 109 0.50
40 62 0.29
41 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.23, T:0.25
Consensus pattern (39 bp):
ACTCGCACAAATGCCTTCGGACTTAGCCCGGATTTAGTA
Found at i:44716275 original size:40 final size:40
Alignment explanation
Indices: 44716191--44716414 Score: 296
Period size: 40 Copynumber: 5.7 Consensus size: 40
44716181 TTGAATGATG
* * * *
44716191 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
44716231 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
44716271 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
44716310 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
44716350 TCCGGGTTAAGTCCCGAAGGCA-TTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
44716390 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
44716415 AACGAGAGCT
Statistics
Matches: 165, Mismatches: 13, Indels: 12
0.87 0.07 0.06
Matches are distributed among these distances:
39 69 0.42
40 88 0.53
41 8 0.05
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:44716327 original size:79 final size:80
Alignment explanation
Indices: 44716191--44716414 Score: 296
Period size: 79 Copynumber: 2.8 Consensus size: 80
44716181 TTGAATGATG
* * * * *
44716191 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGCTAAG-TCCCGAAGGCAT
*
44716254 TTGTGCGAGATACTAAT
64 TTGTGCGAGATACTAAA
*
44716271 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
*
44716335 GTGCGAGTTACTAAA
66 GTGCGAGATACTAAA
* *
44716350 TCCGGGTTAAGTCCCGAAGGCA-TTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATT
44716413 TG
65 TG
44716415 AACGAGAGCT
Statistics
Matches: 129, Mismatches: 11, Indels: 9
0.87 0.07 0.06
Matches are distributed among these distances:
78 1 0.01
79 98 0.76
80 30 0.23
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:44724291 original size:40 final size:40
Alignment explanation
Indices: 44724053--44724277 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
44724043 TTGAATGATG
* * * *
44724053 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
44724093 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
44724133 TTCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
44724172 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
44724212 TCCGGGTTATGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
44724253 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
44724278 AACGAGGAGC
Statistics
Matches: 165, Mismatches: 15, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
39 34 0.21
40 121 0.73
41 10 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:44726117 original size:13 final size:14
Alignment explanation
Indices: 44726099--44726131 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
44726089 AATGAAAAAC
*
44726099 AAACATATCAATA-
1 AAACATATAAATAT
44726112 AAACATATAAATAT
1 AAACATATAAATAT
44726126 AAACAT
1 AAACAT
44726132 GGTCGAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 12 0.67
14 6 0.33
ACGTcount: A:0.64, C:0.12, G:0.00, T:0.24
Consensus pattern (14 bp):
AAACATATAAATAT
Found at i:44727098 original size:17 final size:17
Alignment explanation
Indices: 44727076--44727108 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
44727066 AGTCATAAGC
*
44727076 AAATAAACATCTCAATG
1 AAATAAACAACTCAATG
44727093 AAATAAACAACTCAAT
1 AAATAAACAACTCAAT
44727109 TTAACGAAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.58, C:0.18, G:0.03, T:0.21
Consensus pattern (17 bp):
AAATAAACAACTCAATG
Found at i:44727724 original size:56 final size:55
Alignment explanation
Indices: 44727606--44727906 Score: 228
Period size: 56 Copynumber: 5.7 Consensus size: 55
44727596 CCCCAAATAG
* * * *
44727606 GGTCTTACTCGTAAACGCATATCGGAATCACCTATCATGCCAAT-TATTAAACGT
1 GGTCTTACTCGCACACACATATCGGAATCACATATCATGCCAATGTATTAAACGT
* * *
44727660 GGTCTTACTTGC-CTACACATATTGGAATCACATATCGATGCCAATGTATTACACGT
1 GGTCTTACTCGCAC-ACACATATCGGAATCACATATC-ATGCCAATGTATTAAACGT
* * *
44727716 TGTCTTACTCGCACACACATATCGAAATCACATATCAATGCCAATGTATTAGAC--
1 GGTCTTACTCGCACACACATATCGGAATCACATATC-ATGCCAATGTATTAAACGT
** * *
44727770 -CAC-TA-TCGGA-ATCACATATC-G-----------ATGCCAACGTATTAAACGT
1 GGTCTTACTCGCACA-CACATATCGGAATCACATATCATGCCAATGTATTAAACGT
** ** *
44727810 GGTCTTACTCGCACACACATATCGGAATCACATATTGTTGCCAACATATTAAACTT
1 GGTCTTACTCGCACACACATATCGGAATCACATA-TCATGCCAATGTATTAAACGT
*
44727866 GGTCTTACTCGCACACACGTATCGGAATCACATATCGATGC
1 GGTCTTACTCGCACACACATATCGGAATCACATATC-ATGC
44727907 AACATCCAAG
Statistics
Matches: 194, Mismatches: 28, Indels: 48
0.72 0.10 0.18
Matches are distributed among these distances:
38 15 0.08
41 1 0.01
42 2 0.01
43 12 0.06
44 2 0.01
50 1 0.01
51 12 0.06
52 2 0.01
53 1 0.01
54 29 0.15
55 9 0.05
56 107 0.55
57 1 0.01
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.29
Consensus pattern (55 bp):
GGTCTTACTCGCACACACATATCGGAATCACATATCATGCCAATGTATTAAACGT
Found at i:44727828 original size:150 final size:148
Alignment explanation
Indices: 44727625--44727906 Score: 406
Period size: 150 Copynumber: 1.9 Consensus size: 148
44727615 CGTAAACGCA
* * * *
44727625 TATCGGAATCACCTATCATGCCAATTATTAAACGTGGTCTTACTTGCCTACACATATTGGAATCA
1 TATCGGAATCACATATCATGCCAAGTATTAAACGTGGTCTTACTCGCCTACACATATCGGAATCA
** *
44727690 CATATCGATGCCAATGTATTACACGTT-GTCTTACTCGCACACACATATCGAAATCACATATCAA
66 CATATCGATGCCAACATATTAAAC-TTGGTCTTACTCGCACACACATATCGAAATCACATATCAA
44727754 TGCCAATGTATTAGACCAC
130 TGCCAATGTATTAGACCAC
44727773 TATCGGAATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCAC-ACACATATCGGAA
1 TATCGGAATCACATATC-ATGCCAA-GTATTAAACGTGGTCTTACTCGC-CTACACATATCGGAA
* * * *
44727837 TCACATATTGTTGCCAACATATTAAACTTGGTCTTACTCGCACACACGTATCGGAATCACATATC
63 TCACATATCGATGCCAACATATTAAACTTGGTCTTACTCGCACACACATATCGAAATCACATATC
*
44727902 GATGC
128 AATGC
44727907 AACATCCAAG
Statistics
Matches: 118, Mismatches: 12, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
148 16 0.14
149 9 0.08
150 92 0.78
151 1 0.01
ACGTcount: A:0.32, C:0.25, G:0.14, T:0.29
Consensus pattern (148 bp):
TATCGGAATCACATATCATGCCAAGTATTAAACGTGGTCTTACTCGCCTACACATATCGGAATCA
CATATCGATGCCAACATATTAAACTTGGTCTTACTCGCACACACATATCGAAATCACATATCAAT
GCCAATGTATTAGACCAC
Found at i:44727860 original size:94 final size:94
Alignment explanation
Indices: 44727683--44727860 Score: 275
Period size: 94 Copynumber: 1.9 Consensus size: 94
44727673 TACACATATT
* * *
44727683 GGAATCACATATCGATGCCAATGTATTACACGTTGTCTTACTCGCACACACATATCGAAATCACA
1 GGAATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACACACATATCGAAATCACA
**
44727748 TATCAATGCCAATGTATTAGACCACTATC
66 TATCAATGCCAACATATTAGACCACTATC
*
44727777 GGAATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACACACATATCGGAATCACA
1 GGAATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACACACATATCGAAATCACA
***
44727842 TATTGTTGCCAACATATTA
66 TATCAATGCCAACATATTA
44727861 AACTTGGTCT
Statistics
Matches: 75, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
94 75 1.00
ACGTcount: A:0.34, C:0.25, G:0.14, T:0.28
Consensus pattern (94 bp):
GGAATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACACACATATCGAAATCACA
TATCAATGCCAACATATTAGACCACTATC
Found at i:44728016 original size:43 final size:43
Alignment explanation
Indices: 44727891--44728028 Score: 190
Period size: 43 Copynumber: 3.3 Consensus size: 43
44727881 CACGTATCGG
*
44727891 AATCACATATCGATG-CAACATCCAAGACGTGGTCTTACACGT
1 AATCACATATCGATGCCAACATCCCAGACGTGGTCTTACACGT
* * *
44727933 AAT-ACATATCGATGCCAACGTCGCAGACGTGGTCTCACACGT
1 AATCACATATCGATGCCAACATCCCAGACGTGGTCTTACACGT
* * *
44727975 AATCACATATCGATGCCAACATCCCGGATGTGCTCTTACACGT
1 AATCACATATCGATGCCAACATCCCAGACGTGGTCTTACACGT
*
44728018 AATCACGTATC
1 AATCACATATC
44728029 AAAAATCCTA
Statistics
Matches: 83, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
41 11 0.13
42 29 0.35
43 43 0.52
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.24
Consensus pattern (43 bp):
AATCACATATCGATGCCAACATCCCAGACGTGGTCTTACACGT
Found at i:44732436 original size:13 final size:14
Alignment explanation
Indices: 44732418--44732450 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
44732408 AATAAAAAAC
*
44732418 AAACATATCAATA-
1 AAACATATAAATAT
44732431 AAACATATAAATAT
1 AAACATATAAATAT
44732445 AAACAT
1 AAACAT
44732451 GGTCGAAATG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 12 0.67
14 6 0.33
ACGTcount: A:0.64, C:0.12, G:0.00, T:0.24
Consensus pattern (14 bp):
AAACATATAAATAT
Found at i:44734023 original size:56 final size:56
Alignment explanation
Indices: 44733952--44734358 Score: 459
Period size: 56 Copynumber: 7.5 Consensus size: 56
44733942 CTACTCATAA
* * *
44733952 ACACATATTGAAATCACCTATCAATGCCAACGTATTAAATGTGGTCTTACTCGCAC
1 ACACATATCGGAATCACATATCAATGCCAACGTATTAAATGTGGTCTTACTCGCAC
* * * *
44734008 ACACTTATCAGAATCACCTATCGATGCCAACGTATTAAATGTGGTCTTACTCGCAC
1 ACACATATCGGAATCACATATCAATGCCAACGTATTAAATGTGGTCTTACTCGCAC
* * * *
44734064 ACATATATCGGAATCACATATCGATGCCAACGTATTAAATGCGGTCTTTCTCGCAC
1 ACACATATCGGAATCACATATCAATGCCAACGTATTAAATGTGGTCTTACTCGCAC
* * * *
44734120 ACACATATTGGAATCACATATCGATACCAACGTATTAAACGTGGTCTTACTCGCAC
1 ACACATATCGGAATCACATATCAATGCCAACGTATTAAATGTGGTCTTACTCGCAC
* * * *
44734176 ACACATATCGGAATCACATA-CTGATGCCAACG---T--ACGTGGTATTACTTGCAC
1 ACACATATCGGAATCACATATC-AATGCCAACGTATTAAATGTGGTCTTACTCGCAC
* *
44734227 ACACATATCGAAATCACATATCAATGCCAACATATTAAA--T-GTCTTACT--CAC
1 ACACATATCGGAATCACATATCAATGCCAACGTATTAAATGTGGTCTTACTCGCAC
* * *
44734278 ACACATATTGGAATCACATATCAATGCCAACATATTAAA--T-GACTTACT--CAC
1 ACACATATCGGAATCACATATCAATGCCAACGTATTAAATGTGGTCTTACTCGCAC
* *
44734329 ACATATATCAGAATCACATATCAATGCCAA
1 ACACATATCGGAATCACATATCAATGCCAA
44734359 TGTCCCAGAC
Statistics
Matches: 313, Mismatches: 31, Indels: 19
0.86 0.09 0.05
Matches are distributed among these distances:
51 121 0.39
52 1 0.00
53 8 0.03
54 2 0.01
55 1 0.00
56 180 0.58
ACGTcount: A:0.35, C:0.25, G:0.12, T:0.27
Consensus pattern (56 bp):
ACACATATCGGAATCACATATCAATGCCAACGTATTAAATGTGGTCTTACTCGCAC
Found at i:44734401 original size:43 final size:43
Alignment explanation
Indices: 44734340--44734559 Score: 327
Period size: 43 Copynumber: 5.1 Consensus size: 43
44734330 CATATATCAG
* *
44734340 AATCACATATCAATGCCAATGTCCCAGACGTGGTCTTACATGT
1 AATCACATATCGATGCCAATGTCCCAGACGTGGTCTTACACGT
* *
44734383 AATCACATATCAATGCCAATGTCCCAGACATGGTCTTACAC-T
1 AATCACATATCGATGCCAATGTCCCAGACGTGGTCTTACACGT
*
44734425 AATCACATATCGATG-CAATTGTCCCAGACGTGGTCTTACATGT
1 AATCACATATCGATGCCAA-TGTCCCAGACGTGGTCTTACACGT
* * * *
44734468 AGTCACATATCGATGCCAACGTTCCAAACGTGGTCTTACACGT
1 AATCACATATCGATGCCAATGTCCCAGACGTGGTCTTACACGT
*
44734511 AATCACATATCGATGCCAATGTCCCAGACGTGGTCTTACACAT
1 AATCACATATCGATGCCAATGTCCCAGACGTGGTCTTACACGT
44734554 AATCAC
1 AATCAC
44734560 GTATTGGAAA
Statistics
Matches: 159, Mismatches: 15, Indels: 6
0.88 0.08 0.03
Matches are distributed among these distances:
41 3 0.02
42 35 0.22
43 118 0.74
44 3 0.02
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (43 bp):
AATCACATATCGATGCCAATGTCCCAGACGTGGTCTTACACGT
Found at i:44734484 original size:85 final size:86
Alignment explanation
Indices: 44734340--44734559 Score: 336
Period size: 85 Copynumber: 2.6 Consensus size: 86
44734330 CATATATCAG
* *
44734340 AATCACATATCAATGCCAATGTCCCAGACGTGGTCTTACATGTAATCACATATCAATGCCAATGT
1 AATCACATATCGATGCCAATGTCCCAGACGTGGTCTTACATGTAATCACATATCAATGCCAACGT
*
44734405 CCCAGACATGGTCTTACAC-T
66 CCCAAACATGGTCTTACACGT
* *
44734425 AATCACATATCGATG-CAATTGTCCCAGACGTGGTCTTACATGTAGTCACATATCGATGCCAACG
1 AATCACATATCGATGCCAA-TGTCCCAGACGTGGTCTTACATGTAATCACATATCAATGCCAACG
* *
44734489 TTCCAAACGTGGTCTTACACGT
65 TCCCAAACATGGTCTTACACGT
**
44734511 AATCACATATCGATGCCAATGTCCCAGACGTGGTCTTACACATAATCAC
1 AATCACATATCGATGCCAATGTCCCAGACGTGGTCTTACATGTAATCAC
44734560 GTATTGGAAA
Statistics
Matches: 122, Mismatches: 10, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
84 3 0.02
85 73 0.60
86 43 0.35
87 3 0.02
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (86 bp):
AATCACATATCGATGCCAATGTCCCAGACGTGGTCTTACATGTAATCACATATCAATGCCAACGT
CCCAAACATGGTCTTACACGT
Found at i:44756962 original size:23 final size:23
Alignment explanation
Indices: 44756934--44756977 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
44756924 CATGCTAATA
44756934 ATAAATGCAATC-ATCATGCATTC
1 ATAAAT-CAATCAATCATGCATTC
*
44756957 ATAAATCAATCAATTATGCAT
1 ATAAATCAATCAATCATGCAT
44756978 ATTAGGGGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 5 0.26
23 14 0.74
ACGTcount: A:0.43, C:0.18, G:0.07, T:0.32
Consensus pattern (23 bp):
ATAAATCAATCAATCATGCATTC
Found at i:44767782 original size:40 final size:40
Alignment explanation
Indices: 44767713--44767822 Score: 125
Period size: 40 Copynumber: 2.7 Consensus size: 40
44767703 TTCAATAAAT
*
44767713 CAAAGCTA-TCTCAATATCGCACACATAGTGCC-TCATATAGC
1 CAAAGCTATTC-CAA-ATCGCACACTTAGTGCCAT-ATATAGC
* * * *
44767754 CGAAGCTATTCCAACTCTCACACTTAGTGCCATATGTAGC
1 CAAAGCTATTCCAAATCGCACACTTAGTGCCATATATAGC
*
44767794 CAAAGCTATTTCAAATCGCACACTTAGTG
1 CAAAGCTATTCCAAATCGCACACTTAGTG
44767823 TCGAACTTAG
Statistics
Matches: 58, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
40 45 0.78
41 11 0.19
42 2 0.03
ACGTcount: A:0.32, C:0.28, G:0.14, T:0.26
Consensus pattern (40 bp):
CAAAGCTATTCCAAATCGCACACTTAGTGCCATATATAGC
Found at i:44770202 original size:17 final size:17
Alignment explanation
Indices: 44770176--44770214 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
44770166 CTTGAAATAC
*
44770176 AACCTTTTCTTTAAGTG
1 AACCTATTCTTTAAGTG
44770193 AACCTATTCTTTAAGTG
1 AACCTATTCTTTAAGTG
44770210 AACCT
1 AACCT
44770215 TTGGATCACC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.28, C:0.21, G:0.10, T:0.41
Consensus pattern (17 bp):
AACCTATTCTTTAAGTG
Found at i:44774520 original size:68 final size:68
Alignment explanation
Indices: 44774353--44774528 Score: 150
Period size: 68 Copynumber: 2.6 Consensus size: 68
44774343 TAGTACCACT
* * * * *
44774353 CATGCGACCTAGC--CA-ATTTGTCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCTACATATATATCTCGTAGCTCTCTTGTCTACATGGTGTACATCAC-TCGAAT
*
44774415 CACG
65 CACA
* * *
44774419 CATGCGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGG-GATACATC-C-CGT
1 CATGCGACCTAGCTACATATATATCT--CGTAGCTCTCTTGTCTACATGGTG-TACATCACTCGA
44774481 ATCACA
63 ATCACA
*
44774487 CATGTGACCTAGCTACTATATAGTATCTCGTAGC-CTTCTTGT
1 CATGCGACCTAGCTAC-ATATA-TATCTCGTAGCTC-TCTTGT
44774529 ACACATGATG
Statistics
Matches: 90, Mismatches: 11, Indels: 16
0.77 0.09 0.14
Matches are distributed among these distances:
66 13 0.14
67 1 0.01
68 35 0.39
69 9 0.10
70 6 0.07
71 26 0.29
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (68 bp):
CATGCGACCTAGCTACATATATATCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTCGAATC
ACA
Found at i:44792684 original size:50 final size:49
Alignment explanation
Indices: 44792566--44792695 Score: 181
Period size: 50 Copynumber: 2.6 Consensus size: 49
44792556 CTGGTACGCA
* * * **
44792566 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTTTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAGTCTAATACACG
*
44792615 TAGTAGCCTGCACTTAGTACTACACACGTGACCTCACCA-TCTAATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAACAGTCTAATACACG
44792665 TAGTAGCCTGCACTTAGTACTACACACGTGA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA
44792696 TCACAGTTTT
Statistics
Matches: 73, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
49 29 0.40
50 40 0.55
51 4 0.05
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAGTCTAATACACG
Found at i:44792739 original size:101 final size:99
Alignment explanation
Indices: 44792566--44792752 Score: 268
Period size: 101 Copynumber: 1.9 Consensus size: 99
44792556 CTGGTACGCA
* * *
44792566 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTTTGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAGTTTGGTACACATAGTACCCTGCACTTA
*
44792631 GTACTACACACGTGACCTCACCATCTAATACACG
66 GTACTACACACGCGACCTCACCATCTAATACACG
* * *
44792665 TAGTAGCCTGCACTTAGTACTACACACGTGATC-ACAGTTTTCGGGTACGCATAGTACCCTGCAC
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAG-TTT--GGTACACATAGTACCCTGCAC
*
44792729 TTAGTACTACACATGCGACCTCAC
63 TTAGTACTACACACGCGACCTCAC
44792753 AATAGATCAT
Statistics
Matches: 77, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
98 4 0.05
99 33 0.43
101 40 0.52
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.25
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAGTTTGGTACACATAGTACCCTGCACTTA
GTACTACACACGCGACCTCACCATCTAATACACG
Found at i:44794635 original size:46 final size:46
Alignment explanation
Indices: 44794569--44794659 Score: 155
Period size: 46 Copynumber: 2.0 Consensus size: 46
44794559 AAAACATAGA
*
44794569 AAAATAACACGAAGTAAGCTTTATAGATTAGTAAGCTCGTATGTGG
1 AAAATAACACGAAGTAAGCTTCATAGATTAGTAAGCTCGTATGTGG
* *
44794615 AAAATAACAGGAAGTAAGCTTCATAGCTTAGTAAGCTCGTATGTG
1 AAAATAACACGAAGTAAGCTTCATAGATTAGTAAGCTCGTATGTG
44794660 AACAACTTAA
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 42 1.00
ACGTcount: A:0.38, C:0.12, G:0.22, T:0.27
Consensus pattern (46 bp):
AAAATAACACGAAGTAAGCTTCATAGATTAGTAAGCTCGTATGTGG
Found at i:44795737 original size:18 final size:18
Alignment explanation
Indices: 44795714--44795755 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
44795704 TGGCCCATTA
44795714 CAGTAACAATAAAT-AGTG
1 CAGTAACAAT-AATCAGTG
* *
44795732 CAGTAATAGTAATCAGTG
1 CAGTAACAATAATCAGTG
44795750 CAGTAA
1 CAGTAA
44795756 TAGTTTAAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 3 0.14
18 18 0.86
ACGTcount: A:0.45, C:0.12, G:0.19, T:0.24
Consensus pattern (18 bp):
CAGTAACAATAATCAGTG
Found at i:44799874 original size:46 final size:46
Alignment explanation
Indices: 44799818--44799993 Score: 171
Period size: 46 Copynumber: 3.8 Consensus size: 46
44799808 TGTTGGGGCA
*
44799818 TCCGAACTCGTTGAGTTGAGT-TCGAGTTTACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCT-GAGTTCACTTATGGATGCGAATG
* * *** * *
44799864 TCCGAACTCGTTGAGTTGAGTCCGAGATCGAGAGATGTAACTAG-GCA--
1 TCCGAACTCGTTGAGTTGAGTCTGAGTTC-ACTTATG-GA-T-GCGAATG
* *
44799911 TCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATG
* *
44799957 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGG
44799994 GCGGGTTACA
Statistics
Matches: 105, Mismatches: 17, Indels: 16
0.76 0.12 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 65 0.62
47 30 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATG
Found at i:44805726 original size:27 final size:27
Alignment explanation
Indices: 44805689--44806002 Score: 373
Period size: 27 Copynumber: 11.6 Consensus size: 27
44805679 TAAATTGTAC
44805689 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
44805716 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
44805743 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
44805769 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
44805797 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
44805825 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
44805852 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
44805878 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
44805906 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
44805934 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* *
44805961 AGCACTAAGTGTGCGAGTTGA-TGATAT
1 AGCACTAAGTGTGCGATTTGACT-ATGT
*
44805988 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
44806003 GACTCAATAT
Statistics
Matches: 248, Mismatches: 32, Indels: 14
0.84 0.11 0.05
Matches are distributed among these distances:
26 1 0.00
27 201 0.81
28 46 0.19
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Done.