Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 136 of 362
Found at i:45019314 original size:53 final size:53
Alignment explanation
Indices: 45019257--45019393 Score: 139
Period size: 53 Copynumber: 2.6 Consensus size: 53
45019247 TTTCGATAAT
**
45019257 TTTACAAGTCAAGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTAGTAA
1 TTTACAAACCAAGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTAGTAA
* * ** * * *
45019310 TTTACAAACCAGGGGTATTTTGGTAATTTTACTGATCGAGGGTATTTTGGTAA
1 TTTACAAACCAAGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTAGTAA
** * * *
45019363 TTTTGTAAACTAAGGGTATTTCAATAATTTT
1 -TTTACAAACCAAGGGTATTTTAGTAATTTT
45019394 GTAAATCGAG
Statistics
Matches: 67, Mismatches: 16, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
53 44 0.66
54 23 0.34
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (53 bp):
TTTACAAACCAAGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTAGTAA
Found at i:45019328 original size:80 final size:80
Alignment explanation
Indices: 45019240--45019392 Score: 200
Period size: 80 Copynumber: 1.9 Consensus size: 80
45019230 TTCTACCTAT
45019240 AGGGGTATTTCGATAATTTTACA-AGTCAAGGGTATTTTAGTAATTTTACAAACCAAGGGTATTT
1 AGGGGTATTTCGATAATTTTACAGA-TCAAGGGTATTTTAGTAATTTTACAAACCAAGGGTATTT
* *
45019304 TAGTAATTTACAAACC
65 CAATAATTTACAAACC
* * * * * ** *
45019320 AGGGGTATTTTGGTAATTTTACTGATCGAGGGTATTTTGGTAATTTTGTAAACTAAGGGTATTTC
1 AGGGGTATTTCGATAATTTTACAGATCAAGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTC
45019385 AATAATTT
66 AATAATTT
45019393 TGTAAATCGA
Statistics
Matches: 62, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
80 61 0.98
81 1 0.02
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.40
Consensus pattern (80 bp):
AGGGGTATTTCGATAATTTTACAGATCAAGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTC
AATAATTTACAAACC
Found at i:45019475 original size:27 final size:27
Alignment explanation
Indices: 45019395--45019476 Score: 110
Period size: 27 Copynumber: 3.0 Consensus size: 27
45019385 AATAATTTTG
* * *
45019395 TAAATCGAGGATAAAACAGTAATTCTG
1 TAAATCGAGGGTAAAACGGTAATTCTA
*
45019422 TAAATCGAGGGTGAAACGGTAATTCTA
1 TAAATCGAGGGTAAAACGGTAATTCTA
* *
45019449 TAAATTGAGGGTAAAATGGTAATTCTA
1 TAAATCGAGGGTAAAACGGTAATTCTA
45019476 T
1 T
45019477 CTTATTTCAG
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 48 1.00
ACGTcount: A:0.40, C:0.09, G:0.22, T:0.29
Consensus pattern (27 bp):
TAAATCGAGGGTAAAACGGTAATTCTA
Found at i:45019519 original size:27 final size:27
Alignment explanation
Indices: 45019489--45019551 Score: 83
Period size: 27 Copynumber: 2.3 Consensus size: 27
45019479 TATTTCAGTG
45019489 ATTTTACAAATCGAGGATA-TTTGGGTA
1 ATTTTACAAATCGAGGATACTTT-GGTA
* * *
45019516 ATTTTATAAATCGGGGGTACTTTGGTA
1 ATTTTACAAATCGAGGATACTTTGGTA
45019543 ATTTTACAA
1 ATTTTACAA
45019552 GTTGAAGGTA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
27 28 0.90
28 3 0.10
ACGTcount: A:0.32, C:0.08, G:0.21, T:0.40
Consensus pattern (27 bp):
ATTTTACAAATCGAGGATACTTTGGTA
Found at i:45021207 original size:42 final size:43
Alignment explanation
Indices: 45021149--45021251 Score: 111
Period size: 42 Copynumber: 2.4 Consensus size: 43
45021139 TATTTATGTA
** *
45021149 TAAGACCATGTCTGGGACATCGACATCG-TATCTG-ATTTCATG
1 TAAGACCATGTCTGGGACAAAGACATCGATAT-TGAATTACATG
* * *
45021191 TAAGACCCTGTTTGGGACAAAGGCATCGATATTGAATTACATG
1 TAAGACCATGTCTGGGACAAAGACATCGATATTGAATTACATG
* *
45021234 TAAGACCACGTCAGGGAC
1 TAAGACCATGTCTGGGAC
45021252 GTCTGCGTTG
Statistics
Matches: 49, Mismatches: 10, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
42 25 0.51
43 24 0.49
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.26
Consensus pattern (43 bp):
TAAGACCATGTCTGGGACAAAGACATCGATATTGAATTACATG
Found at i:45025014 original size:99 final size:99
Alignment explanation
Indices: 45024839--45025038 Score: 373
Period size: 99 Copynumber: 2.0 Consensus size: 99
45024829 CCGTATCTAG
45024839 ATCAATTTGTTGTTGTATTCATTGATGATATATTGATTTATTCACGTGATGAATCTGAGCATGCC
1 ATCAATTTGTTGTTGTATTCATTGATGATATATTGATTTATTCACGTGATGAATCTGAGCATGCC
45024904 AAGCATCTGAGAGTAGTGCTACAAACTCTGCGAA
66 AAGCATCTGAGAGTAGTGCTACAAACTCTGCGAA
*
45024938 ATCAATTTGTTGTTGTATTCATTGATGATATATTGATTTATTCACTTGATGAATCTGAGCATGCC
1 ATCAATTTGTTGTTGTATTCATTGATGATATATTGATTTATTCACGTGATGAATCTGAGCATGCC
* *
45025003 GAGCATTTGAGAGTAGTGCTACAAACTCTGCGAA
66 AAGCATCTGAGAGTAGTGCTACAAACTCTGCGAA
45025037 AT
1 AT
45025039 AAAGAATTGT
Statistics
Matches: 98, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
99 98 1.00
ACGTcount: A:0.29, C:0.14, G:0.20, T:0.36
Consensus pattern (99 bp):
ATCAATTTGTTGTTGTATTCATTGATGATATATTGATTTATTCACGTGATGAATCTGAGCATGCC
AAGCATCTGAGAGTAGTGCTACAAACTCTGCGAA
Found at i:45028570 original size:42 final size:43
Alignment explanation
Indices: 45028524--45028617 Score: 129
Period size: 42 Copynumber: 2.2 Consensus size: 43
45028514 TATTTACGTA
** *
45028524 TAAGACCATGTCTGGGACATCGGCATC-ATATCT-AATTTCATG
1 TAAGACCATGTCTGGGACAGAGGCATCGATAT-TGAATTACATG
*
45028566 TAAGACCCTGTCTGGGACAGAGGCATCGATATTGAATTACATG
1 TAAGACCATGTCTGGGACAGAGGCATCGATATTGAATTACATG
45028609 TAAGACCAT
1 TAAGACCAT
45028618 ATCAAAGACG
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
42 25 0.56
43 20 0.44
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28
Consensus pattern (43 bp):
TAAGACCATGTCTGGGACAGAGGCATCGATATTGAATTACATG
Found at i:45033800 original size:13 final size:13
Alignment explanation
Indices: 45033784--45033808 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
45033774 GGAAAAATGT
45033784 ATGAGAAATGTAG
1 ATGAGAAATGTAG
45033797 ATGAGAAATGTA
1 ATGAGAAATGTA
45033809 TGTTTATTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.28, T:0.24
Consensus pattern (13 bp):
ATGAGAAATGTAG
Found at i:45035448 original size:45 final size:45
Alignment explanation
Indices: 45035397--45035487 Score: 164
Period size: 45 Copynumber: 2.0 Consensus size: 45
45035387 TGAATCCAAG
*
45035397 ATAGATTTCTCTTCCCTTTCCTCACGTGTACTCTGCTCTCTTCTA
1 ATAGATTTCTCTTCCCTTTCCTCACATGTACTCTGCTCTCTTCTA
*
45035442 ATAGATTTCTCTTCCCTTTCCTCACATGTATTCTGCTCTCTTCTA
1 ATAGATTTCTCTTCCCTTTCCTCACATGTACTCTGCTCTCTTCTA
45035487 A
1 A
45035488 GCTGCTGCCC
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.15, C:0.32, G:0.08, T:0.45
Consensus pattern (45 bp):
ATAGATTTCTCTTCCCTTTCCTCACATGTACTCTGCTCTCTTCTA
Found at i:45036445 original size:17 final size:18
Alignment explanation
Indices: 45036411--45036457 Score: 53
Period size: 17 Copynumber: 2.6 Consensus size: 18
45036401 TCTCTTAAAT
45036411 TTCAATTTTATTTAATTA
1 TTCAATTTTATTTAATTA
45036429 TTCAA-TTTA-TTACATTA
1 TTCAATTTTATTTA-ATTA
*
45036446 TTAATATTTTAT
1 TTCA-ATTTTAT
45036458 ACTAATTGAA
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
16 3 0.12
17 11 0.46
18 6 0.25
19 4 0.17
ACGTcount: A:0.34, C:0.06, G:0.00, T:0.60
Consensus pattern (18 bp):
TTCAATTTTATTTAATTA
Found at i:45051480 original size:40 final size:40
Alignment explanation
Indices: 45051421--45051529 Score: 166
Period size: 40 Copynumber: 2.7 Consensus size: 40
45051411 TATTCGGATG
*
45051421 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACT
* *
45051461 A-ATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACT
*
45051501 ATAACCGGGCTAAGTGCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
45051530 AGCAAGTAGT
Statistics
Matches: 62, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
39 1 0.02
40 60 0.97
41 1 0.02
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACT
Found at i:45051829 original size:22 final size:21
Alignment explanation
Indices: 45051788--45051831 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
45051778 GAATGTGCAT
45051788 ATATGAAGTTATCCATTTAGCC
1 ATATGAAGTTATCCA-TTAGCC
45051810 ATATGAATGTTATACC-TTAGCC
1 ATATGAA-GTTAT-CCATTAGCC
45051832 GAAACTAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 13 0.65
23 5 0.25
24 2 0.10
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (21 bp):
ATATGAAGTTATCCATTAGCC
Found at i:45074276 original size:28 final size:28
Alignment explanation
Indices: 45074244--45074333 Score: 108
Period size: 28 Copynumber: 3.2 Consensus size: 28
45074234 CCTAATCTCT
* * *
45074244 TTCATATTGCCCATCGGGCTCAATCACA
1 TTCATATGGCCCATCAGGCCCAATCACA
*
45074272 TTCATATGGCCCATCAGGCCCAATCACT
1 TTCATATGGCCCATCAGGCCCAATCACA
* * *
45074300 TTCATATGACCCGTCAGGCCTAATCACA
1 TTCATATGGCCCATCAGGCCCAATCACA
*
45074328 GTCATA
1 TTCATA
45074334 GTCATGCAAT
Statistics
Matches: 53, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 53 1.00
ACGTcount: A:0.27, C:0.32, G:0.14, T:0.27
Consensus pattern (28 bp):
TTCATATGGCCCATCAGGCCCAATCACA
Found at i:45078981 original size:28 final size:28
Alignment explanation
Indices: 45078940--45079069 Score: 152
Period size: 28 Copynumber: 4.6 Consensus size: 28
45078930 GGCCCTTTTA
* *
45078940 GGCCCAATCTCATTCATATCACCCATCG
1 GGCCCAATCACATTCATATCGCCCATCG
* *
45078968 AGCCCAATCACATTCATATTGCCCATCG
1 GGCCCAATCACATTCATATCGCCCATCG
* *
45078996 GGCCTAATCACATTCATATGGCCCATCG
1 GGCCCAATCACATTCATATCGCCCATCG
* ** * *
45079024 GGCCCAATCACTTTCATAAGGCCCGTCA
1 GGCCCAATCACATTCATATCGCCCATCG
*
45079052 GGCCCAATCACACTCATA
1 GGCCCAATCACATTCATA
45079070 GTCATGCAAT
Statistics
Matches: 88, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 88 1.00
ACGTcount: A:0.27, C:0.36, G:0.14, T:0.23
Consensus pattern (28 bp):
GGCCCAATCACATTCATATCGCCCATCG
Found at i:45080907 original size:42 final size:42
Alignment explanation
Indices: 45080800--45080919 Score: 143
Period size: 42 Copynumber: 2.8 Consensus size: 42
45080790 CAGAAAACAT
* * *
45080800 ATACAATGCCAATGTCCCAGACGTGGTCTTACATGTAATCAA
1 ATACAATGCTAATGTCCCAGACATGGTCTTACACGTAATCAA
* * * * *
45080842 ATATCGATGCTACTGTCACAGACAAGGTCTTACACG-ATATCAG
1 ATA-CAATGCTAATGTCCCAGACATGGTCTTACACGTA-ATCAA
45080885 ATACAATGCTAATGTCCCAGACATGGTCTTACACG
1 ATACAATGCTAATGTCCCAGACATGGTCTTACACG
45080920 CAAAACAAAA
Statistics
Matches: 64, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
42 32 0.50
43 32 0.50
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.26
Consensus pattern (42 bp):
ATACAATGCTAATGTCCCAGACATGGTCTTACACGTAATCAA
Found at i:45086385 original size:49 final size:47
Alignment explanation
Indices: 45086196--45086802 Score: 1000
Period size: 47 Copynumber: 12.7 Consensus size: 47
45086186 TTAGGATTCT
* * *
45086196 ATGTGATGGATGTGAACA-TGCATATATGTGGTAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
45086243 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
45086290 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
45086337 ATGTGATGAATGTGAAAGTGTATACATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTAT--ATATGTGATAAGGCCTAATGGCCG
45086386 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
45086433 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
45086482 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
45086531 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
*
45086580 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCTG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
45086627 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
45086674 ATGTGATGAATGTGATAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
45086721 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * *
45086768 ACGTGATGGATGTGAAACTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
45086803 TCCCGAAGGG
Statistics
Matches: 537, Mismatches: 18, Indels: 10
0.95 0.03 0.02
Matches are distributed among these distances:
46 1 0.00
47 344 0.64
49 192 0.36
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.30
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:45086976 original size:37 final size:37
Alignment explanation
Indices: 45086920--45086998 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
45086910 TCGAGCTCTA
* * *
45086920 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
* *
45086957 AAGACCCGATAACTTCGTGTGGAGATTATGTCTGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
45086994 AAGAC
1 AAGAC
45086999 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:45093196 original size:35 final size:35
Alignment explanation
Indices: 45093150--45093220 Score: 133
Period size: 35 Copynumber: 2.0 Consensus size: 35
45093140 AGTGGCATAT
45093150 CGACTAGCTTTACCTTCAAAATTAGAAAATATTCA
1 CGACTAGCTTTACCTTCAAAATTAGAAAATATTCA
*
45093185 CGACTAGCTTTACCTTCAGAATTAGAAAATATTCA
1 CGACTAGCTTTACCTTCAAAATTAGAAAATATTCA
45093220 C
1 C
45093221 AACGTATTTC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.31
Consensus pattern (35 bp):
CGACTAGCTTTACCTTCAAAATTAGAAAATATTCA
Found at i:45093883 original size:16 final size:16
Alignment explanation
Indices: 45093864--45093896 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
45093854 TTTCAGCCAC
45093864 TTAGTTCTCTTACAAG
1 TTAGTTCTCTTACAAG
*
45093880 TTAGTTCTCTTGCAAG
1 TTAGTTCTCTTACAAG
45093896 T
1 T
45093897 AAGTGACTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.21, C:0.18, G:0.15, T:0.45
Consensus pattern (16 bp):
TTAGTTCTCTTACAAG
Found at i:45095744 original size:16 final size:16
Alignment explanation
Indices: 45095723--45095776 Score: 63
Period size: 16 Copynumber: 3.4 Consensus size: 16
45095713 TGCGCTCTTA
*
45095723 TAACATATAATCCATG
1 TAACATATAATTCATG
* *
45095739 TAACATGTGATTCATG
1 TAACATATAATTCATG
* *
45095755 TAATATATTATTCATG
1 TAACATATAATTCATG
45095771 TAACAT
1 TAACAT
45095777 GTACTTTATC
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
16 31 1.00
ACGTcount: A:0.39, C:0.13, G:0.09, T:0.39
Consensus pattern (16 bp):
TAACATATAATTCATG
Found at i:45096056 original size:23 final size:23
Alignment explanation
Indices: 45095999--45096062 Score: 78
Period size: 22 Copynumber: 2.8 Consensus size: 23
45095989 CCCGTAAGGA
*
45095999 CTGAAA-AGATAAGCTCAGAAGAG
1 CTGAAACA-ATAAGCTCATAAGAG
**
45096022 CT-AAACGGTAAGCTCATAAGAG
1 CTGAAACAATAAGCTCATAAGAG
45096044 CTGAAACAATAAGCTCATA
1 CTGAAACAATAAGCTCATA
45096063 CGAGTTGTGG
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
22 18 0.53
23 16 0.47
ACGTcount: A:0.45, C:0.17, G:0.20, T:0.17
Consensus pattern (23 bp):
CTGAAACAATAAGCTCATAAGAG
Found at i:45096924 original size:19 final size:19
Alignment explanation
Indices: 45096902--45096938 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
45096892 TCGGGTCCCG
*
45096902 ATGGGCCGAAAGGGCCTAT
1 ATGGGCCCAAAGGGCCTAT
*
45096921 ATGGGCCCAATGGGCCTA
1 ATGGGCCCAAAGGGCCTA
45096939 CGTGTCCAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.24, C:0.24, G:0.35, T:0.16
Consensus pattern (19 bp):
ATGGGCCCAAAGGGCCTAT
Found at i:45097148 original size:26 final size:27
Alignment explanation
Indices: 45097118--45097430 Score: 169
Period size: 27 Copynumber: 11.7 Consensus size: 27
45097108 TTTAGTTTAC
45097118 TAAAATTACTGAAATACCCCTAG-TTG
1 TAAAATTACTGAAATACCCCTAGATTG
* *
45097144 TAAAATTAC-CAAAGTACCCC-CGATT-
1 TAAAATTACTGAAA-TACCCCTAGATTG
* * *
45097169 TAAAAATTACCGAAATA-CCGTCGATTG
1 T-AAAATTACTGAAATACCCCTAGATTG
*
45097196 TAAAATTACTGAAATA-CCCTCGACTTG
1 TAAAATTACTGAAATACCCCTAGA-TTG
** ** * *
45097223 TAAAATTACCAAAAGTACCCCCGGTTTA
1 TAAAATTACTGAAA-TACCCCTAGATTG
* * **
45097251 TAAAATTACCGAAATA-CCGTCCATTG
1 TAAAATTACTGAAATACCCCTAGATTG
* *
45097277 TAAAATTACTAAAATA-CCCTCGACTTG
1 TAAAATTACTGAAATACCCCTAGA-TTG
** *
45097304 TAAAATTACCAAAATA-CCCTCAGTTTG
1 TAAAATTACTGAAATACCCCT-AGATTG
* *
45097331 CAAAATTACTGAAATA-CCCTCGATATG
1 TAAAATTACTGAAATACCCCTAGAT-TG
* * * **
45097358 TAAAATTACTAAAATACCCTTATAGGG
1 TAAAATTACTGAAATACCCCTAGATTG
* * * * **
45097385 TAGAATTACTAAAATACCACTATAGGG
1 TAAAATTACTGAAATACCCCTAGATTG
* *
45097412 TAGAATTACCGAAATACCC
1 TAAAATTACTGAAATACCC
45097431 TTGTAGTGTA
Statistics
Matches: 230, Mismatches: 44, Indels: 25
0.77 0.15 0.08
Matches are distributed among these distances:
25 7 0.03
26 77 0.33
27 120 0.52
28 22 0.10
29 4 0.02
ACGTcount: A:0.41, C:0.21, G:0.11, T:0.27
Consensus pattern (27 bp):
TAAAATTACTGAAATACCCCTAGATTG
Found at i:45097223 original size:27 final size:26
Alignment explanation
Indices: 45097118--45097377 Score: 247
Period size: 27 Copynumber: 9.8 Consensus size: 26
45097108 TTTAGTTTAC
*
45097118 TAAAATTACTGAAATACCC-CTAGTTG
1 TAAAATTACTGAAATACCCTCGA-TTG
* *
45097144 TAAAATTAC-CAAAGTACCCCCGATT-
1 TAAAATTACTGAAA-TACCCTCGATTG
* *
45097169 TAAAAATTACCGAAATACCGTCGATTG
1 T-AAAATTACTGAAATACCCTCGATTG
45097196 TAAAATTACTGAAATACCCTCGACTTG
1 TAAAATTACTGAAATACCCTCGA-TTG
** * * *
45097223 TAAAATTACCAAAAGTACCCCCGGTTTA
1 TAAAATTACTGAAA-TACCCTC-GATTG
* * *
45097251 TAAAATTACCGAAATACCGTCCATTG
1 TAAAATTACTGAAATACCCTCGATTG
*
45097277 TAAAATTACTAAAATACCCTCGACTTG
1 TAAAATTACTGAAATACCCTCGA-TTG
** *
45097304 TAAAATTACCAAAATACCCTCAGTTTG
1 TAAAATTACTGAAATACCCTC-GATTG
*
45097331 CAAAATTACTGAAATACCCTCGATATG
1 TAAAATTACTGAAATACCCTCGAT-TG
*
45097358 TAAAATTACTAAAATACCCT
1 TAAAATTACTGAAATACCCT
45097378 TATAGGGTAG
Statistics
Matches: 193, Mismatches: 30, Indels: 21
0.79 0.12 0.09
Matches are distributed among these distances:
25 4 0.02
26 76 0.39
27 90 0.47
28 22 0.11
29 1 0.01
ACGTcount: A:0.40, C:0.22, G:0.10, T:0.28
Consensus pattern (26 bp):
TAAAATTACTGAAATACCCTCGATTG
Found at i:45097270 original size:81 final size:80
Alignment explanation
Indices: 45097118--45097377 Score: 373
Period size: 81 Copynumber: 3.2 Consensus size: 80
45097108 TTTAGTTTAC
* * * *
45097118 TAAAATTACTGAAATACCC-CTAGTTGTAAAATTACC-AAAGTACCCCCGATTTAAAAATTACCG
1 TAAAATTACTAAAATACCCTCGACTTGTAAAATTACCAAAAGTACCCCCGGTTTAAAAATTACCG
45097181 AAATACCGTCGATTG
66 AAATACCGTCGATTG
*
45097196 TAAAATTACTGAAATACCCTCGACTTGTAAAATTACCAAAAGTACCCCCGGTTTATAAAATTACC
1 TAAAATTACTAAAATACCCTCGACTTGTAAAATTACCAAAAGTACCCCCGGTTTA-AAAATTACC
*
45097261 GAAATACCGTCCATTG
65 GAAATACCGTCGATTG
* * * *
45097277 TAAAATTACTAAAATACCCTCGACTTGTAAAATTACCAAAA-TACCCTCAGTTTGCAAAATTACT
1 TAAAATTACTAAAATACCCTCGACTTGTAAAATTACCAAAAGTACCCCCGGTTT-AAAAATTACC
*
45097341 GAAATACCCTCGATATG
65 GAAATACCGTCGAT-TG
45097358 TAAAATTACTAAAATACCCT
1 TAAAATTACTAAAATACCCT
45097378 TATAGGGTAG
Statistics
Matches: 166, Mismatches: 11, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
78 19 0.11
79 15 0.09
80 46 0.28
81 86 0.52
ACGTcount: A:0.40, C:0.22, G:0.10, T:0.28
Consensus pattern (80 bp):
TAAAATTACTAAAATACCCTCGACTTGTAAAATTACCAAAAGTACCCCCGGTTTAAAAATTACCG
AAATACCGTCGATTG
Found at i:45097391 original size:27 final size:27
Alignment explanation
Indices: 45097334--45097736 Score: 501
Period size: 27 Copynumber: 15.0 Consensus size: 27
45097324 CAGTTTGCAA
* * *
45097334 AATTACTGAAATACCCTCGATA-TGTAA
1 AATTACTGAAATACCCTTG-TAGGGTAG
* *
45097361 AATTACTAAAATACCCTTATAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
* *
45097388 AATTACTAAAATACCAC-TATAGGGTAG
1 AATTACTGAAATACC-CTTGTAGGGTAG
* *
45097415 AATTACCGAAATACCCTTGTAGTGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
45097442 AATTA-TCGAAATACCCTTGTAGGGTAG
1 AATTACT-GAAATACCCTTGTAGGGTAG
* * *
45097469 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
* *
45097496 AATTACTAAAATACCCCTGTA-GGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
*
45097522 AATTACTAAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
*
45097549 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
* *
45097576 AGTTACTGCAATACGCC-TGTAGGGTAG
1 AATTACTGAAATAC-CCTTGTAGGGTAG
*
45097603 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
*
45097630 AATTACTGAAATACCCTTGTAAGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
*
45097657 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
* *
45097684 AATTATTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
* * *
45097711 AATTACCGAGATACCCTTGTGGGGTA
1 AATTACTGAAATACCCTTGTAGGGTA
45097737 AAATGGTAAT
Statistics
Matches: 332, Mismatches: 36, Indels: 16
0.86 0.09 0.04
Matches are distributed among these distances:
26 30 0.09
27 299 0.90
28 3 0.01
ACGTcount: A:0.35, C:0.17, G:0.20, T:0.27
Consensus pattern (27 bp):
AATTACTGAAATACCCTTGTAGGGTAG
Found at i:45097392 original size:81 final size:82
Alignment explanation
Indices: 45097171--45097740 Score: 327
Period size: 81 Copynumber: 7.1 Consensus size: 82
45097161 CCCCGATTTA
* * * * *
45097171 AAAATTACCGAAATACCGTCGAT-TGTAAAATTACTGAAATACCCTCGACT--TGTAAAATTACC
1 AAAATTACCGAAATACCCTCGATATGTAAAATTACTAAAATACCCT-TA-TAGGGTAGAATTACC
* * ***
45097233 AAAAGTACCCCCGGT-TTAT
64 AAAA-TACCCTCAGTAGGGT
* * * * *
45097252 AAAATTACCGAAATACCGTCCAT-TGTAAAATTACTAAAATACCCTCGACT--TGTAAAATTACC
1 AAAATTACCGAAATACCCTCGATATGTAAAATTACTAAAATACCCT-TA-TAGGGTAGAATTACC
** *
45097314 AAAATACCCTCAGT-TTGC
64 AAAATACCCTCAGTAGGGT
* *
45097332 AAAATTACTGAAATACCCTCGATATGTAAAATTACTAAAATACCCTTATAGGGTAGAATTACTAA
1 AAAATTACCGAAATACCCTCGATATGTAAAATTACTAAAATACCCTTATAGGGTAGAATTACCAA
45097397 AATACCACT-A-TAGGGT
66 AATACC-CTCAGTAGGGT
* * * * * *
45097413 AGAATTACCGAAATACCCTTG-TAGTGTAGAATTA-TCGAAATACCCTTGTAGGGTAGAAATACC
1 AAAATTACCGAAATACCCTCGATA-TGTAAAATTACT-AAAATACCCTTATAGGGTAGAATTACC
* *
45097476 GAAATACCC-CTGTAGGGT
64 AAAATACCCTCAGTAGGGT
* ** * * * **
45097494 AGAATTACTAAAATACCC-CTG-TAGGTAGAATTACTAAAATACCCTTGTAGGGTAGAATTACTG
1 AAAATTACCGAAATACCCTC-GATATGTAAAATTACTAAAATACCCTTATAGGGTAGAATTACCA
*
45097557 AAATACCC-CTGTAGGGT
65 AAATACCCTCAGTAGGGT
* * * * * * * * * *
45097574 AGAGTTACTGCAATACGCCT-G-TAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACT
1 AAAATTACCGAAATAC-CCTCGATA-TGTAAAATTACTAAAATACCCTTATAGGGTAGAATTACC
* * *
45097637 GAAATACCCT-TGTAAGGT
64 AAAATACCCTCAGTAGGGT
* * * * * * * * *
45097655 AGAATTACCGAAATACCCTTG-TAGGGTAGAATTATTGAAATACCCCTGTAGGGTAGAATTACCG
1 AAAATTACCGAAATACCCTCGATA-TGTAAAATTACTAAAATACCCTTATAGGGTAGAATTACCA
* * *
45097719 AGATACCCT-TGTGGGGT
65 AAATACCCTCAGTAGGGT
45097736 AAAAT
1 AAAAT
45097741 GGTAATTTTA
Statistics
Matches: 425, Mismatches: 48, Indels: 32
0.84 0.10 0.06
Matches are distributed among these distances:
79 1 0.00
80 106 0.25
81 316 0.74
82 2 0.00
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.27
Consensus pattern (82 bp):
AAAATTACCGAAATACCCTCGATATGTAAAATTACTAAAATACCCTTATAGGGTAGAATTACCAA
AATACCCTCAGTAGGGT
Found at i:45098013 original size:27 final size:26
Alignment explanation
Indices: 45097968--45098030 Score: 81
Period size: 27 Copynumber: 2.3 Consensus size: 26
45097958 TGGAGGAAGC
*
45097968 GTTCTGGTGGCTATGCCACAAATATTT
1 GTTCTGGTGGCTATACCAC-AATATTT
* *
45097995 GTTCTGGTTGCTCTACCACAATATTT
1 GTTCTGGTGGCTATACCACAATATTT
45098021 GTATCTGGTG
1 GT-TCTGGTG
45098031 ACTTTGTCAC
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 9 0.29
27 22 0.71
ACGTcount: A:0.19, C:0.19, G:0.22, T:0.40
Consensus pattern (26 bp):
GTTCTGGTGGCTATACCACAATATTT
Found at i:45098268 original size:98 final size:98
Alignment explanation
Indices: 45098060--45098261 Score: 332
Period size: 98 Copynumber: 2.1 Consensus size: 98
45098050 TGACCGATCG
* * *
45098060 ATGGCTGAGTGTCGATCATGTTACCGAAGGCTGTGTGCCGTTATTGTGGGCTTCGTATTGATATT
1 ATGGCTGAGTGCCGATCATGTTACCGAAGGCTGTGTGCCATTATTGTGGGCTTCGTATCGATATT
*
45098125 GTAGGCTTCGTGCCGATTATAGACCCGTTATCA
66 GTAGGCTTCATGCCGATTATAGACCCGTTATCA
* *
45098158 ATGGCTGAGTGCCGATCATGTTACCGAAGGCTGTGTGCCATTATTGTGGGCTTTGTATCGGTATT
1 ATGGCTGAGTGCCGATCATGTTACCGAAGGCTGTGTGCCATTATTGTGGGCTTCGTATCGATATT
* *
45098223 GTGGGCTTCATTCCGATTATAGACCCGTTATCA
66 GTAGGCTTCATGCCGATTATAGACCCGTTATCA
45098256 ATGGCT
1 ATGGCT
45098262 TTGTGCCACG
Statistics
Matches: 96, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
98 96 1.00
ACGTcount: A:0.18, C:0.19, G:0.28, T:0.35
Consensus pattern (98 bp):
ATGGCTGAGTGCCGATCATGTTACCGAAGGCTGTGTGCCATTATTGTGGGCTTCGTATCGATATT
GTAGGCTTCATGCCGATTATAGACCCGTTATCA
Found at i:45098313 original size:27 final size:27
Alignment explanation
Indices: 45098283--45098355 Score: 94
Period size: 27 Copynumber: 2.7 Consensus size: 27
45098273 ATTCTGTTAA
* *
45098283 GTGGCTTTGCCACATTATCTA-ATTCTG
1 GTGGCTCTGCCACAATATCTATA-TCTG
45098310 GTGGCTCTGCCACAATATCTATATCTG
1 GTGGCTCTGCCACAATATCTATATCTG
* *
45098337 GTGACTCTGTCACAATATC
1 GTGGCTCTGCCACAATATC
45098356 AGTTCTGGCA
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
27 40 0.98
28 1 0.02
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.36
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTATATCTG
Found at i:45098557 original size:17 final size:18
Alignment explanation
Indices: 45098535--45098570 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
45098525 ATTCTGAATT
45098535 TGATTCT-AGTTTGATTC
1 TGATTCTCAGTTTGATTC
*
45098552 TGATTCTCATTTTGATTC
1 TGATTCTCAGTTTGATTC
45098570 T
1 T
45098571 AGTTCTGATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 7 0.41
18 10 0.59
ACGTcount: A:0.17, C:0.14, G:0.14, T:0.56
Consensus pattern (18 bp):
TGATTCTCAGTTTGATTC
Found at i:45099251 original size:18 final size:18
Alignment explanation
Indices: 45099228--45099263 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
45099218 TTACAGAAAT
45099228 TTCAATTATAAATATATG
1 TTCAATTATAAATATATG
* *
45099246 TTCAATTCTAATTATATG
1 TTCAATTATAAATATATG
45099264 AACTTACTTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.39, C:0.08, G:0.06, T:0.47
Consensus pattern (18 bp):
TTCAATTATAAATATATG
Found at i:45100697 original size:60 final size:60
Alignment explanation
Indices: 45100604--45100783 Score: 324
Period size: 60 Copynumber: 3.0 Consensus size: 60
45100594 CTATGAAAGT
* *
45100604 GCAATTGATACTAAGGATTGTGAGATCGACACTTCGAGTAAGTTCGAAAGAGATAGAGTA
1 GCAATTGATACTATGGATAGTGAGATCGACACTTCGAGTAAGTTCGAAAGAGATAGAGTA
45100664 GCAATTGATACTATGGATAGTGAGATCGACACTTCGAGTAAGTTCGAAAGAGATAGAGTA
1 GCAATTGATACTATGGATAGTGAGATCGACACTTCGAGTAAGTTCGAAAGAGATAGAGTA
* *
45100724 GCAATTGATACTATGGATAGTGAGATCGACACTTTGAGTAAGTTCGACAGAGATAGAGTA
1 GCAATTGATACTATGGATAGTGAGATCGACACTTCGAGTAAGTTCGAAAGAGATAGAGTA
45100784 TCGAAAAATC
Statistics
Matches: 116, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
60 116 1.00
ACGTcount: A:0.36, C:0.12, G:0.27, T:0.26
Consensus pattern (60 bp):
GCAATTGATACTATGGATAGTGAGATCGACACTTCGAGTAAGTTCGAAAGAGATAGAGTA
Found at i:45100947 original size:44 final size:44
Alignment explanation
Indices: 45100894--45100978 Score: 152
Period size: 44 Copynumber: 1.9 Consensus size: 44
45100884 TATATATGAG
* *
45100894 GCATCTGAACTCGTTGAATTGGTCTGAGTTCATTATGGATGGGA
1 GCATCTGAACTCGTTGAATTGGTCCGAGTTCATAATGGATGGGA
45100938 GCATCTGAACTCGTTGAATTGGTCCGAGTTCATAATGGATG
1 GCATCTGAACTCGTTGAATTGGTCCGAGTTCATAATGGATG
45100979 TGATACATGT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 39 1.00
ACGTcount: A:0.24, C:0.15, G:0.28, T:0.33
Consensus pattern (44 bp):
GCATCTGAACTCGTTGAATTGGTCCGAGTTCATAATGGATGGGA
Found at i:45104153 original size:46 final size:45
Alignment explanation
Indices: 45104086--45104255 Score: 218
Period size: 46 Copynumber: 3.7 Consensus size: 45
45104076 TGTAACCCGC
45104086 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GGCATTCGCAT
*
45104132 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG-ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGC-A--T
* *** *
45104178 GCATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGG-CATTCGCAT
45104225 CCATAAGTGAACTCGGACTCAACTCAACGAG
1 CCATAAGTGAACTCGGACTCAACTCAACGAG
45104256 TTTGGATGCT
Statistics
Matches: 106, Mismatches: 11, Indels: 14
0.81 0.08 0.11
Matches are distributed among these distances:
43 1 0.01
44 4 0.04
45 2 0.02
46 62 0.58
47 32 0.30
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGCAT
Found at i:45104206 original size:93 final size:93
Alignment explanation
Indices: 45104094--45104264 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
45104084 GCCCATAAGT
45104094 GAACTCGGACTCAACTCAACGAGCTCAGG-CATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
45104158 ACGAGCTCGGATGCCTAGTTGCATCTCTC
65 ACGAGCTCGGATGCCTAGTTGCATCTCTC
*
45104187 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
* *
45104252 CGAGTTTGGATGC
66 CGAGCTCGGATGC
45104265 TCAACCATCC
Statistics
Matches: 74, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 2 0.03
93 72 0.97
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTGCATCTCTC
Found at i:45109633 original size:48 final size:48
Alignment explanation
Indices: 45109571--45109995 Score: 769
Period size: 48 Copynumber: 8.9 Consensus size: 48
45109561 TATATATGTG
45109571 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
45109619 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
45109667 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
45109715 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* * *
45109763 TGTGGTAAAGTCGAATGGCTAATGTGAAATATATATGAGATATGTAAA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
45109811 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
45109859 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
45109907 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* * *
45109955 TGTGGTAACGCCGAATGGCTAGTGTGAAATATGTAGGAGAT
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
45109996 GTGTGTATAT
Statistics
Matches: 368, Mismatches: 9, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 368 1.00
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.31
Consensus pattern (48 bp):
TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
Found at i:45110186 original size:37 final size:37
Alignment explanation
Indices: 45110131--45110221 Score: 137
Period size: 37 Copynumber: 2.4 Consensus size: 37
45110121 AACTTGGAAA
*
45110131 TATATTCCGGGTAAGACCCGATGACTATGTGTGGAGAT
1 TATA-TCCGGGTAAGACCCGATGACTACGTGTGGAGAT
*
45110169 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
1 TATATCCGGGTAAGACCCGATGACTACGTGTGGAGAT
* *
45110206 TTTATCCAGGTAAGAC
1 TATATCCGGGTAAGAC
45110222 TCAATTACTA
Statistics
Matches: 48, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
37 45 0.94
38 3 0.06
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.27
Consensus pattern (37 bp):
TATATCCGGGTAAGACCCGATGACTACGTGTGGAGAT
Found at i:45110238 original size:37 final size:37
Alignment explanation
Indices: 45110131--45110238 Score: 108
Period size: 37 Copynumber: 2.9 Consensus size: 37
45110121 AACTTGGAAA
* * **
45110131 TATATTCCGGGTAAGACCCGATGACTATGTGTGGAGAT
1 TATA-TCCAGGTAAGACCCAATGACTACATGTGGAGAT
* * * *
45110169 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
1 TATATCCAGGTAAGACCCAATGACTACATGTGGAGAT
* * *
45110206 TTTATCCAGGTAAGACTCAATTACTACATGTGG
1 TATATCCAGGTAAGACCCAATGACTACATGTGG
45110239 GGACTATTCG
Statistics
Matches: 61, Mismatches: 9, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
37 58 0.95
38 3 0.05
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.29
Consensus pattern (37 bp):
TATATCCAGGTAAGACCCAATGACTACATGTGGAGAT
Found at i:45111570 original size:40 final size:40
Alignment explanation
Indices: 45111517--45111715 Score: 245
Period size: 40 Copynumber: 5.0 Consensus size: 40
45111507 TTGAGAGTTA
* * * *
45111517 TATAGCCGAGCTAAGTCCTGAAGAGCATTCGTACTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
*
45111557 TATGTCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* * * * * *
45111597 TATGTCCGGGCTAAGTCTCGGAGAGCATTCGTGTTAGAGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* *
45111637 TATATCAGGGTTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* * * *
45111677 TATATCTGGGCTAGGTCCCGAAGAGCAATCATGCTGGTG
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
45111716 ATGTGTATTC
Statistics
Matches: 136, Mismatches: 23, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 136 1.00
ACGTcount: A:0.22, C:0.20, G:0.31, T:0.28
Consensus pattern (40 bp):
TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
Found at i:45115208 original size:46 final size:46
Alignment explanation
Indices: 45115086--45115210 Score: 196
Period size: 46 Copynumber: 2.7 Consensus size: 46
45115076 GGTTGAGCAT
* * *
45115086 CCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
45115132 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * *
45115178 CCGAGCTTGTTGTGTTGAGTCCGAGTTCACTTA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
45115211 GGGGCGGGTT
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 73 1.00
ACGTcount: A:0.20, C:0.22, G:0.28, T:0.30
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:45120651 original size:34 final size:35
Alignment explanation
Indices: 45120577--45120651 Score: 91
Period size: 36 Copynumber: 2.1 Consensus size: 35
45120567 TTATTACGAA
* *
45120577 GTCTTACCCGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGACAAAATCTCCACAC-AAGTCATCGG
*
45120613 GTCTTACCCGGACAAAATC-CCACA-TAGTCATCGG
1 GTCTTACCC-GACAAAATCTCCACACAAGTCATCGG
45120647 GTCTT
1 GTCTT
45120652 TAGAGCTCGG
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
34 13 0.37
36 14 0.40
37 8 0.23
ACGTcount: A:0.27, C:0.31, G:0.17, T:0.25
Consensus pattern (35 bp):
GTCTTACCCGACAAAATCTCCACACAAGTCATCGG
Found at i:45120912 original size:47 final size:47
Alignment explanation
Indices: 45120769--45121321 Score: 787
Period size: 47 Copynumber: 11.6 Consensus size: 47
45120759 CCCTTCGGGA
* * * * * *
45120769 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* ** *
45120816 C-TGTCACATATATACACTTTCACATTCATTCACATCATCACGTTAGGC
1 CTTATCACATATATACACTTTCACATTCA-TCACATCGGC-CATTAGGC
*
45120864 CTTATCACATATATACACTTTCACATTCATCACGTCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
45120911 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
45120958 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
45121005 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
45121052 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
45121099 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
45121146 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
45121195 CTTATCACATATATACACTTTCACATTGATCACAT---CCATTAGCATCGGCC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATT---A--GG-C
* *
45121245 ATTAGCTTATCAATATATATACACTTTCACATTCATCACATCGGCTATTA--C
1 -----CTTATC-ACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
45121296 C-TATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
45121322 TACACACTGT
Statistics
Matches: 465, Mismatches: 21, Indels: 43
0.88 0.04 0.08
Matches are distributed among these distances:
44 25 0.05
45 4 0.01
46 25 0.05
47 283 0.61
48 13 0.03
49 75 0.16
50 1 0.00
51 1 0.00
55 6 0.01
56 28 0.06
59 4 0.01
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:45121265 original size:56 final size:57
Alignment explanation
Indices: 45121180--45121286 Score: 173
Period size: 56 Copynumber: 1.9 Consensus size: 57
45121170 ACATTCATCA
*
45121180 CATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTGATCACATCCATTAG
1 CATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCCATTAG
*
45121237 CATCGGCCATTA-G-CTTATCAATATATATACACTTTCACATTCATCACATC
1 CATCGGCCATTAGGCCTTATC-ACATATATACACTTTCACATTCATCACATC
45121287 GGCTATTACC
Statistics
Matches: 47, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
55 6 0.13
56 29 0.62
57 12 0.26
ACGTcount: A:0.31, C:0.28, G:0.08, T:0.33
Consensus pattern (57 bp):
CATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCCATTAG
Found at i:45129669 original size:92 final size:93
Alignment explanation
Indices: 45129558--45129727 Score: 306
Period size: 92 Copynumber: 1.8 Consensus size: 93
45129548 ACCCAAAAGT
* *
45129558 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGAC-CAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
45129622 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
45129650 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
45129715 CGAGTTCGGATGC
66 CGAGTTCGGATGC
45129728 TCAACCATCC
Statistics
Matches: 74, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 53 0.72
93 21 0.28
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:45129700 original size:46 final size:46
Alignment explanation
Indices: 45129554--45129724 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
45129544 ACCCACCCAA
* * *
45129554 AAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCAT
1 AAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT
* *
45129600 AAGTGAACTCGGAC-CAACTCAACGAGTTCGGATGCCTAGTT-ACAT--TT
1 AAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCAT
* *
45129647 CA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT
1 AAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT
45129692 AAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 AAGTGAACTCGGACTCAACTCAACGAGTTCGGA
45129725 TGCTCAACCA
Statistics
Matches: 104, Mismatches: 11, Indels: 20
0.77 0.08 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 18 0.17
46 53 0.51
47 20 0.19
48 1 0.01
49 3 0.03
50 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.21
Consensus pattern (46 bp):
AAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT
Found at i:45135226 original size:29 final size:29
Alignment explanation
Indices: 45135184--45135258 Score: 114
Period size: 29 Copynumber: 2.6 Consensus size: 29
45135174 TGAATGTGAC
* *
45135184 TGGGCCTAACGGGCCATATAAATGTGATT
1 TGGGCCTAATGGGCCATATAAAGGTGATT
* *
45135213 TTGGCCTAATGGGCCATATACAGGTGATT
1 TGGGCCTAATGGGCCATATAAAGGTGATT
45135242 TGGGCCTAATGGGCCAT
1 TGGGCCTAATGGGCCAT
45135259 GTGACAGCCC
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.28
Consensus pattern (29 bp):
TGGGCCTAATGGGCCATATAAAGGTGATT
Found at i:45137230 original size:39 final size:39
Alignment explanation
Indices: 45137115--45137241 Score: 168
Period size: 39 Copynumber: 3.2 Consensus size: 39
45137105 ATGATATCTA
*
45137115 GAATTATATCCGGACTTAAGGTCCGCAGGCTATGT-CTTG
1 GAATTATATCCGGACTTAAGGTCCGCAGGCTATATGC-TG
** *
45137154 GAATTATATCCGGGTTTAA-ATACCCGCAGGCTATATGCTG
1 GAATTATATCCGGACTTAAGGT--CCGCAGGCTATATGCTG
45137194 GAATTATATCCGGACTTAAGGTCCGCAGGCTATATGCTG
1 GAATTATATCCGGACTTAAGGTCCGCAGGCTATATGCTG
*
45137233 GAAATATAT
1 GAATTATAT
45137242 TCGGGTTTAA
Statistics
Matches: 76, Mismatches: 8, Indels: 8
0.83 0.09 0.09
Matches are distributed among these distances:
38 1 0.01
39 42 0.55
40 31 0.41
41 2 0.03
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.30
Consensus pattern (39 bp):
GAATTATATCCGGACTTAAGGTCCGCAGGCTATATGCTG
Found at i:45140984 original size:27 final size:27
Alignment explanation
Indices: 45140939--45141196 Score: 295
Period size: 27 Copynumber: 9.6 Consensus size: 27
45140929 CTCAAATTGA
* *
45140939 TAAAA-GACCGTTTTTCCCTTATGTGG
1 TAAAATGACTGTTTTGCCCTTATGTGG
*
45140965 TAAAATG-CATGTTTTGCCCTAATGTGG
1 TAAAATGAC-TGTTTTGCCCTTATGTGG
* * *
45140992 TAAAATGACTATTTTTCCCTTATATGG
1 TAAAATGACTGTTTTGCCCTTATGTGG
* * *
45141019 TAAAATGATTATTTTACCCTTATGTGG
1 TAAAATGACTGTTTTGCCCTTATGTGG
* **
45141046 TAAAATGACTGCTTTATCCTTATGTGG
1 TAAAATGACTGTTTTGCCCTTATGTGG
* *
45141073 TAAAATGACTTTTTTTCCCTTATGTGG
1 TAAAATGACTGTTTTGCCCTTATGTGG
* * *
45141100 TAAAATGACTATTTTACTCTTATGTGG
1 TAAAATGACTGTTTTGCCCTTATGTGG
*
45141127 TAAAATGACTGTTTTGCCCTTATGTAG
1 TAAAATGACTGTTTTGCCCTTATGTGG
* * *
45141154 TAAAATGATTGTCTTGCCCTTATATGG
1 TAAAATGACTGTTTTGCCCTTATGTGG
*
45141181 TAAGATGACTGTTTTG
1 TAAAATGACTGTTTTG
45141197 GGCTATGTGA
Statistics
Matches: 197, Mismatches: 32, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
26 6 0.03
27 190 0.96
28 1 0.01
ACGTcount: A:0.26, C:0.14, G:0.17, T:0.42
Consensus pattern (27 bp):
TAAAATGACTGTTTTGCCCTTATGTGG
Found at i:45141046 original size:81 final size:81
Alignment explanation
Indices: 45140949--45141195 Score: 334
Period size: 81 Copynumber: 3.0 Consensus size: 81
45140939 TAAAAGACCG
* *
45140949 TTTTTCCCTTATGTGGTAAAATG-CATGTTTTGCCCTAATGTGGTAAAATGACTATTTTTCCCTT
1 TTTTACCCTTATGTGGTAAAATGAC-TGTTTTGCCCTTATGTGGTAAAATGACTATTTTTCCCTT
*
45141013 ATATGGTAAAATGATTA
65 ATATGGTAAAATGACTA
* ** *
45141030 TTTTACCCTTATGTGGTAAAATGACTGCTTTATCCTTATGTGGTAAAATGACTTTTTTTCCCTTA
1 TTTTACCCTTATGTGGTAAAATGACTGTTTTGCCCTTATGTGGTAAAATGACTATTTTTCCCTTA
*
45141095 TGTGGTAAAATGACTA
66 TATGGTAAAATGACTA
* * * * * *
45141111 TTTTACTCTTATGTGGTAAAATGACTGTTTTGCCCTTATGTAGTAAAATGATTGTCTTGCCCTTA
1 TTTTACCCTTATGTGGTAAAATGACTGTTTTGCCCTTATGTGGTAAAATGACTATTTTTCCCTTA
* *
45141176 TATGGTAAGATGACTG
66 TATGGTAAAATGACTA
45141192 TTTT
1 TTTT
45141196 GGGCTATGTG
Statistics
Matches: 145, Mismatches: 20, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
81 144 0.99
82 1 0.01
ACGTcount: A:0.26, C:0.14, G:0.17, T:0.44
Consensus pattern (81 bp):
TTTTACCCTTATGTGGTAAAATGACTGTTTTGCCCTTATGTGGTAAAATGACTATTTTTCCCTTA
TATGGTAAAATGACTA
Found at i:45141542 original size:18 final size:19
Alignment explanation
Indices: 45141519--45141562 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 19
45141509 AGGACTTGTA
*
45141519 TACTGTTAT-TGCACTGAT
1 TACTGTTATCTACACTGAT
45141537 TACTGTT-TCTACACTGAT
1 TACTGTTATCTACACTGAT
*
45141555 TATTGTTA
1 TACTGTTA
45141563 CTGTACTGGG
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
17 1 0.05
18 21 0.95
ACGTcount: A:0.23, C:0.16, G:0.14, T:0.48
Consensus pattern (19 bp):
TACTGTTATCTACACTGAT
Found at i:45144184 original size:40 final size:40
Alignment explanation
Indices: 45144079--45144325 Score: 367
Period size: 40 Copynumber: 6.2 Consensus size: 40
45144069 GGATTGATAC
* *
45144079 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
*
45144119 CCGGGCGAAG-CCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
45144158 CCAGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
45144198 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
45144238 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
45144278 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
45144318 CC-GGCTAA
1 CCGGGCTAA
45144326 ACTCTGAAGG
Statistics
Matches: 192, Mismatches: 12, Indels: 7
0.91 0.06 0.03
Matches are distributed among these distances:
39 41 0.21
40 151 0.79
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:45150544 original size:30 final size:30
Alignment explanation
Indices: 45150510--45150569 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
45150500 CTTTAATACG
45150510 AACTTTGGAAAAATTAC-CATTTTGCCCCTA
1 AACTTTGGAAAAATTACAC-TTTTGCCCCTA
* * *
45150540 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
45150570 GGCTCGGGAG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
30 25 0.96
31 1 0.04
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:45152075 original size:27 final size:27
Alignment explanation
Indices: 45152010--45152119 Score: 116
Period size: 27 Copynumber: 4.0 Consensus size: 27
45152000 TGGCTGCCAG
* *
45152010 AACAGATATTGTGACAGAGTCACTAGA
1 AACAGATATTGTGGCAGAGCCACTAGA
*
45152037 TACAGATATTGTGGCAGAGCCACTA-A
1 AACAGATATTGTGGCAGAGCCACTAGA
* *
45152063 AATAGATATTTGTGGC-GTAGCCACCAGA
1 AACAGATA-TTGTGGCAG-AGCCACTAGA
* *
45152091 AACAGATATTTGTGGCATAGCCACCAGA
1 AACAGATA-TTGTGGCAGAGCCACTAGA
45152119 A
1 A
45152120 CGCTTCCTCC
Statistics
Matches: 71, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
26 8 0.11
27 36 0.51
28 27 0.38
ACGTcount: A:0.36, C:0.18, G:0.23, T:0.23
Consensus pattern (27 bp):
AACAGATATTGTGGCAGAGCCACTAGA
Found at i:45152105 original size:28 final size:28
Alignment explanation
Indices: 45152038--45152119 Score: 107
Period size: 28 Copynumber: 3.0 Consensus size: 28
45152028 GTCACTAGAT
*
45152038 ACAGATA-TTGTGGCAG-AGCCACTA-AA
1 ACAGATATTTGTGGC-GTAGCCACCAGAA
*
45152064 ATAGATATTTGTGGCGTAGCCACCAGAA
1 ACAGATATTTGTGGCGTAGCCACCAGAA
*
45152092 ACAGATATTTGTGGCATAGCCACCAGAA
1 ACAGATATTTGTGGCGTAGCCACCAGAA
45152120 CGCTTCCTCC
Statistics
Matches: 49, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
26 7 0.14
27 14 0.29
28 28 0.57
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (28 bp):
ACAGATATTTGTGGCGTAGCCACCAGAA
Found at i:45158469 original size:48 final size:48
Alignment explanation
Indices: 45158413--45158579 Score: 280
Period size: 48 Copynumber: 3.5 Consensus size: 48
45158403 TGCCTCATGT
* * *
45158413 CGATGCCATGTCCCATACATGGTCTTACACTGGCTTACATAACAATGC
1 CGATGCCATGTCCCAGACATGGTCTTACACAGGCTCACATAACAATGC
* *
45158461 CGATGCCATGTCCCAGACATGGTCTTACACCGGCTCACATAACAATGA
1 CGATGCCATGTCCCAGACATGGTCTTACACAGGCTCACATAACAATGC
*
45158509 CGATGCCATGTCCCAGACATGGTCTTACACAGGCTCACATAGCAATGC
1 CGATGCCATGTCCCAGACATGGTCTTACACAGGCTCACATAACAATGC
45158557 CGATGCCATGTCCCAGACATGGT
1 CGATGCCATGTCCCAGACATGGT
45158580 TGTATGGCAT
Statistics
Matches: 112, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 112 1.00
ACGTcount: A:0.27, C:0.31, G:0.20, T:0.23
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTACACAGGCTCACATAACAATGC
Found at i:45172583 original size:37 final size:37
Alignment explanation
Indices: 45172483--45172585 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
45172473 TGAATAGTCC
* *
45172483 CCACACGTAGTTATCGGGTCTTACCCAGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
45172520 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
45172557 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
45172586 ATATATTTCC
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.23
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:45172784 original size:48 final size:47
Alignment explanation
Indices: 45172726--45173054 Score: 541
Period size: 48 Copynumber: 6.9 Consensus size: 47
45172716 ATATACACAC
*
45172726 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACA-TAGCCATTCGGCTTTACCACATATACAT
45172774 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACA-TAGCCATTCGGCTTTACCACATATACAT
*
45172822 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACA-TAGCCATTCGGCTTTACCACATATACAT
*
45172870 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACA-TAGCCATTCGGCTTTACCACATATACAT
45172918 ATCTCATACATATTTCACATCAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACAT-AGCCATTCGGCTTTACCACATATACAT
*
45172966 ATCTCATACATATTTCACATCAGCCATTCGGCTTTACCACCTATACAT
1 ATCTCATACATATTTCACAT-AGCCATTCGGCTTTACCACATATACAT
* *
45173014 ATCTCATATATATTTCACATCAGCCATTTGGCTTTACCACA
1 ATCTCATACATATTTCACAT-AGCCATTCGGCTTTACCACA
45173055 CACATATATA
Statistics
Matches: 272, Mismatches: 8, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
47 1 0.00
48 271 1.00
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.35
Consensus pattern (47 bp):
ATCTCATACATATTTCACATAGCCATTCGGCTTTACCACATATACAT
Found at i:45176223 original size:93 final size:93
Alignment explanation
Indices: 45176116--45176286 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
45176106 GCCCCTAAGT
* *
45176116 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
45176181 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
45176209 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
45176274 CGAGTTCGGATGC
66 CGAGTTCGGATGC
45176287 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:45176283 original size:46 final size:46
Alignment explanation
Indices: 45176111--45176283 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
45176101 AACCCGCCCC
* * *
45176111 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
45176157 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
45176205 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
45176250 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
45176284 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:45176739 original size:30 final size:30
Alignment explanation
Indices: 45176705--45176764 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
45176695 ATTTAATACG
45176705 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
45176735 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
45176765 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:45183785 original size:93 final size:93
Alignment explanation
Indices: 45183678--45183848 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
45183668 CGCCCTAAGT
* *
45183678 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
45183743 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
45183771 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
45183836 CGAGTTCGGATGC
66 CGAGTTCGGATGC
45183849 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:45183845 original size:46 final size:46
Alignment explanation
Indices: 45183673--45183845 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
45183663 TAACCCGCCC
* * *
45183673 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
45183719 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
45183767 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
45183812 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
45183846 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:45184299 original size:30 final size:30
Alignment explanation
Indices: 45184265--45184324 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
45184255 ATTTAATACG
45184265 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
45184295 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
45184325 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:45192847 original size:29 final size:28
Alignment explanation
Indices: 45192815--45192951 Score: 113
Period size: 28 Copynumber: 5.0 Consensus size: 28
45192805 TGATTCAAGA
* *
45192815 ATATATATTAAGTCCGCACACTCAGTGCT
1 ATATATATCAACT-CGCACACTCAGTGCT
*
45192844 ATATA-ATCAACTCGCACACTTAGTGC-
1 ATATATATCAACTCGCACACTCAGTGCT
* *
45192870 -TACATATCAACTCGCACACTTAGTGCT
1 ATATATATCAACTCGCACACTCAGTGCT
* * *
45192897 ACATA-GTCAAACTCGCACACTTAGTGCT
1 ATATATATC-AACTCGCACACTCAGTGCT
* * * *
45192925 ACATA-GTCAATTCGCACACTTAGTGCT
1 ATATATATCAACTCGCACACTCAGTGCT
45192952 GCACAATTTA
Statistics
Matches: 96, Mismatches: 8, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
25 3 0.03
26 21 0.22
27 33 0.34
28 34 0.35
29 5 0.05
ACGTcount: A:0.31, C:0.27, G:0.13, T:0.28
Consensus pattern (28 bp):
ATATATATCAACTCGCACACTCAGTGCT
Found at i:45192918 original size:28 final size:27
Alignment explanation
Indices: 45192829--45192951 Score: 194
Period size: 27 Copynumber: 4.6 Consensus size: 27
45192819 ATATTAAGTC
* * *
45192829 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
45192856 CGCACACTTAGTGCTACATA-TCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
45192882 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
*
45192910 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
45192937 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
45192952 GCACAATTTA
Statistics
Matches: 91, Mismatches: 3, Indels: 4
0.93 0.03 0.04
Matches are distributed among these distances:
26 26 0.29
27 38 0.42
28 27 0.30
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:45196950 original size:47 final size:47
Alignment explanation
Indices: 45196899--45197043 Score: 213
Period size: 47 Copynumber: 3.1 Consensus size: 47
45196889 TTATGATTTT
45196899 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
45196946 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
45196993 ATGTGGTGAATATGAACATGC--ATATGTGGTAAAGCCGAATGGTCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
45197038 ATGTGA
1 ATGTGA
45197044 AATATATATA
Statistics
Matches: 88, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
45 25 0.28
47 63 0.72
ACGTcount: A:0.32, C:0.12, G:0.30, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:45197001 original size:25 final size:25
Alignment explanation
Indices: 45196926--45197001 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
45196916 ATGCATATAT
45196926 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
45196951 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
45196973 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
45196998 GTGA
1 GTGA
45197002 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:45197142 original size:49 final size:50
Alignment explanation
Indices: 45197002--45197147 Score: 235
Period size: 50 Copynumber: 3.0 Consensus size: 50
45196992 AATGTGGTGA
*
45197002 ATATGA-ACATGCATATGTGGTAAAGCCGAATGGTCAATGTGAAATATAT
1 ATATGAGATATGCATATGTGGTAAAGCCGAATGGTCAATGTGAAATATAT
45197051 ATATGAGATATGCATATGTGGTAAAGCCGAATGGTCAATGTGAAATATAT
1 ATATGAGATATGCATATGTGGTAAAGCCGAATGGTCAATGTGAAATATAT
* *
45197101 ATATGAGATAT-TATATGTGGTAAAGCCGAATGG-CTAGTGTGAAATAT
1 ATATGAGATATGCATATGTGGTAAAGCCGAATGGTC-AATGTGAAATAT
45197148 GTAGGCGATG
Statistics
Matches: 92, Mismatches: 3, Indels: 4
0.93 0.03 0.04
Matches are distributed among these distances:
48 1 0.01
49 38 0.41
50 53 0.58
ACGTcount: A:0.38, C:0.08, G:0.24, T:0.30
Consensus pattern (50 bp):
ATATGAGATATGCATATGTGGTAAAGCCGAATGGTCAATGTGAAATATAT
Found at i:45197441 original size:37 final size:37
Alignment explanation
Indices: 45197296--45197440 Score: 245
Period size: 37 Copynumber: 3.9 Consensus size: 37
45197286 GGAAATATAT
45197296 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
45197333 TCCAGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
45197370 TCCGGGTAAGACCCGATGACTACATGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
45197407 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
45197441 TCGTCTGAGC
Statistics
Matches: 101, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 101 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:45199683 original size:14 final size:15
Alignment explanation
Indices: 45199666--45199694 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
45199656 GTACGAAAAT
45199666 TTCACACAT-ATAAA
1 TTCACACATAATAAA
45199680 TTCACACATAATAAA
1 TTCACACATAATAAA
45199695 CATAGAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:45203665 original size:22 final size:22
Alignment explanation
Indices: 45203640--45203683 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
45203630 AACTATTAAC
*
45203640 ATAATGAATTTT-AGTTAATTTT
1 ATAATAAATTTTGA-TTAATTTT
45203662 ATAATAAATTTTGATTAATTTT
1 ATAATAAATTTTGATTAATTTT
45203684 GATTATTTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 19 0.95
23 1 0.05
ACGTcount: A:0.39, C:0.00, G:0.07, T:0.55
Consensus pattern (22 bp):
ATAATAAATTTTGATTAATTTT
Found at i:45206965 original size:43 final size:43
Alignment explanation
Indices: 45206917--45207064 Score: 165
Period size: 43 Copynumber: 3.4 Consensus size: 43
45206907 TACCGAGATG
*
45206917 TGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTATTA
1 TGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATTA
* * * *
45206960 TGATTACGTGTAAAACCATGTCTAGGACATTGGCATCGT-TAA
1 TGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATTA
* * * * *
45207002 TCGATTTCATGTAAGACCCTGTCTGGGATAGTGGCATCG-ATATG
1 T-GATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT-TA
*
45207046 TGATAACATGTAAGACCAT
1 TGATTACATGTAAGACCAT
45207065 ATCTAGGATA
Statistics
Matches: 85, Mismatches: 17, Indels: 6
0.79 0.16 0.06
Matches are distributed among these distances:
42 3 0.04
43 81 0.95
44 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.32
Consensus pattern (43 bp):
TGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATTA
Found at i:45207649 original size:26 final size:24
Alignment explanation
Indices: 45207612--45207659 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 24
45207602 TGCCTTAAAT
*
45207612 GTTGGCTTTTTTTGGTATAGTTATGA
1 GTTGGC-TATTTTGG-ATAGTTATGA
45207638 GTTGGCTATTTTGGATAGTTAT
1 GTTGGCTATTTTGGATAGTTAT
45207660 AATGTAACAC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 8 0.38
25 7 0.33
26 6 0.29
ACGTcount: A:0.17, C:0.04, G:0.27, T:0.52
Consensus pattern (24 bp):
GTTGGCTATTTTGGATAGTTATGA
Found at i:45216124 original size:23 final size:21
Alignment explanation
Indices: 45216079--45216124 Score: 56
Period size: 23 Copynumber: 2.1 Consensus size: 21
45216069 TCATGATTAT
**
45216079 AATCATATCAAAATCATGCCA
1 AATCATATCAAAATCATAACA
45216100 AATCATGAGTCAAAATCATAACA
1 AATCAT-A-TCAAAATCATAACA
45216123 AA
1 AA
45216125 ATTTATCTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 6 0.29
22 1 0.05
23 14 0.67
ACGTcount: A:0.52, C:0.20, G:0.07, T:0.22
Consensus pattern (21 bp):
AATCATATCAAAATCATAACA
Found at i:45216925 original size:43 final size:42
Alignment explanation
Indices: 45216859--45217025 Score: 144
Period size: 43 Copynumber: 3.9 Consensus size: 42
45216849 CTCATACAAT
*
45216859 GCCAATGTCCCAGAC-GTGGTCTTACATGTAATCAAATATTGAC
1 GCCAATGTCCCAGACAG-GGTCTTACACGTAATCAAATA-TGAC
* * *
45216902 GCCACTGTCCCAGACAGGGTCTTACACGAAATC-AATATGAT
1 GCCAATGTCCCAGACAGGGTCTTACACGTAATCAAATATGAC
* * * * *
45216943 GTCAATGTCCCAGACATGATCTTACACGTGAATCAGAAGT-CGAT
1 GCCAATGTCCCAGACAGGGTCTTACACGT-AATCA-AA-TATGAC
* * *
45216987 GCCAACGTCCCAGAC-GTGGTCTTACACGAAATCACATAT
1 GCCAATGTCCCAGACAG-GGTCTTACACGTAATCAAATAT
45217026 CGGATCCTAT
Statistics
Matches: 100, Mismatches: 17, Indels: 15
0.76 0.13 0.11
Matches are distributed among these distances:
41 28 0.28
42 9 0.09
43 33 0.33
44 29 0.29
45 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.24
Consensus pattern (42 bp):
GCCAATGTCCCAGACAGGGTCTTACACGTAATCAAATATGAC
Found at i:45217001 original size:85 final size:85
Alignment explanation
Indices: 45216861--45217025 Score: 212
Period size: 85 Copynumber: 1.9 Consensus size: 85
45216851 CATACAATGC
* * * *
45216861 CAATGTCCCAGACGTGGTCTTACATGTAATCAAATATTGACGCCACTGTCCCAGACAG-GGTCTT
1 CAATGTCCCAGACATGATCTTACACGTAATCAAATATCGACGCCACTGTCCCAGAC-GTGGTCTT
45216925 ACACGAAATCA-ATATGATGT
65 ACACGAAATCACATATGATGT
* *
45216945 CAATGTCCCAGACATGATCTTACACGTGAATCAGAA-GTCGATGCCAAC-GTCCCAGACGTGGTC
1 CAATGTCCCAGACATGATCTTACACGT-AATCA-AATATCGACGCC-ACTGTCCCAGACGTGGTC
45217008 TTACACGAAATCACATAT
63 TTACACGAAATCACATAT
45217026 CGGATCCTAT
Statistics
Matches: 70, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
84 25 0.36
85 37 0.53
86 8 0.11
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.24
Consensus pattern (85 bp):
CAATGTCCCAGACATGATCTTACACGTAATCAAATATCGACGCCACTGTCCCAGACGTGGTCTTA
CACGAAATCACATATGATGT
Found at i:45220483 original size:43 final size:43
Alignment explanation
Indices: 45220394--45220509 Score: 128
Period size: 43 Copynumber: 2.7 Consensus size: 43
45220384 TGTGATTACA
* **
45220394 TGTAAGACCATGTCTGGGACATTGGCATTGTATTGTCATTATG
1 TGTAAGACCATGTCTGGGACATTGGCATCGTATAATCATTATG
* *
45220437 TGTATGACCATGTCTAGGACATTGGCATCGT-TAATCGATT-TCG
1 TGTAAGACCATGTCTGGGACATTGGCATCGTATAATC-ATTAT-G
* * *
45220480 TGTAAGACCCTGTCTGGGACAGTGCCATCG
1 TGTAAGACCATGTCTGGGACATTGGCATCG
45220510 ATATGTGATA
Statistics
Matches: 61, Mismatches: 10, Indels: 4
0.81 0.13 0.05
Matches are distributed among these distances:
42 4 0.07
43 57 0.93
ACGTcount: A:0.22, C:0.19, G:0.26, T:0.33
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACATTGGCATCGTATAATCATTATG
Found at i:45220837 original size:18 final size:18
Alignment explanation
Indices: 45220811--45220853 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
45220801 TTTGTATATG
45220811 GCTTACTAAGATTTTAAA
1 GCTTACTAAGATTTTAAA
* *
45220829 GCTTGCTAAGCTTTTAAA
1 GCTTACTAAGATTTTAAA
45220847 GCTTACT
1 GCTTACT
45220854 TTTTGTGTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.30, C:0.16, G:0.14, T:0.40
Consensus pattern (18 bp):
GCTTACTAAGATTTTAAA
Found at i:45225022 original size:47 final size:47
Alignment explanation
Indices: 45224968--45225161 Score: 282
Period size: 47 Copynumber: 4.1 Consensus size: 47
45224958 TTAGGATTTT
** *
45224968 ATGTGATGAATGTGAATGTGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
45225015 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
45225062 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
45225109 ATGTGGTGAATATGAACAAGCATATATGTTG-TAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATG-TGATAAGGCCGAATGGCCA
45225156 ATGTGA
1 ATGTGA
45225162 AATATGTATG
Statistics
Matches: 133, Mismatches: 13, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
47 131 0.98
48 2 0.02
ACGTcount: A:0.34, C:0.11, G:0.29, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:45225068 original size:22 final size:22
Alignment explanation
Indices: 45224997--45225068 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
45224987 GCATATATGA
45224997 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
45225019 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
45225044 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
45225066 GAT
1 GAT
45225069 GAATGTGAGC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 11 0.30
23 9 0.24
24 9 0.24
25 8 0.22
ACGTcount: A:0.33, C:0.14, G:0.29, T:0.24
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:45225117 original size:25 final size:25
Alignment explanation
Indices: 45225042--45225117 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
45225032 ATGCATATAT
45225042 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
45225067 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
45225089 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
45225114 GTGA
1 GTGA
45225118 ATATGAACAA
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:45225471 original size:37 final size:37
Alignment explanation
Indices: 45225363--45225471 Score: 164
Period size: 37 Copynumber: 2.9 Consensus size: 37
45225353 GGAAATATAT
*
45225363 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
** *
45225400 TCTAGGTAAGACCCGATGACTACGTGTAGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
45225437 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
45225472 CGTCTGAGCT
Statistics
Matches: 63, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:45230017 original size:93 final size:93
Alignment explanation
Indices: 45229905--45230075 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
45229895 GCCCCTAAGT
* *
45229905 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
45229970 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
45229998 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
45230063 CGAGTTCGGATGC
66 CGAGTTCGGATGC
45230076 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:45230072 original size:46 final size:46
Alignment explanation
Indices: 45229900--45230072 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
45229890 AACCCGCCCC
* * *
45229900 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
45229946 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
45229994 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
45230039 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
45230073 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:45230527 original size:30 final size:30
Alignment explanation
Indices: 45230493--45230552 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
45230483 ATTTAATACG
45230493 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * * *
45230523 AACTTTTGCATAATTACACTTTTTCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
45230553 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.38
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:45233728 original size:30 final size:30
Alignment explanation
Indices: 45233694--45233754 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
45233684 TCCTTAACTC
45233694 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
45233724 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
45233754 A
1 A
45233755 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:45238068 original size:131 final size:130
Alignment explanation
Indices: 45237909--45238173 Score: 455
Period size: 131 Copynumber: 2.0 Consensus size: 130
45237899 TCGATACTAA
*
45237909 AAACGATCATTTTACCAAACTTTCCAATTTTTGATTTTTCTCTCATTCTA-GTTCAAATAACATT
1 AAACGATCATTTTACCAAACTTTCCAATTTTCGATTTTTCTCTCATTCTAGGTTCAAATAACATT
45237973 TTCCGGGATCTAAAACATCATATTTTTACTTATTTAATTAATGTACTATTCAAAACA-TCCTTAA
66 TTCCGGGATCTAAAACATCATA--TTTACTTATTTAATTAAT-TACTATTCAAAACAGTCCTTAA
45238037 CTC
128 CTC
*
45238040 AAACGATCATTTTACC-AACTTTCCCAATTTTCGATTTTTCTCTCATTCTAGGTTCAAATATCAT
1 AAACGATCATTTTACCAAACTTT-CCAATTTTCGATTTTTCTCTCATTCTAGGTTCAAATAACAT
45238104 TTTCCGGGATCTAAAACATCATATTTACTTATTTAATTAATTACTATTCAAAACAGTCCTTAACT
65 TTTCCGGGATCTAAAACATCATATTTACTTATTTAATTAATTACTATTCAAAACAGTCCTTAACT
45238169 C
130 C
45238170 AAAC
1 AAAC
45238174 TTTGGAAAAA
Statistics
Matches: 129, Mismatches: 2, Indels: 7
0.93 0.01 0.05
Matches are distributed among these distances:
129 14 0.11
130 38 0.29
131 42 0.33
132 35 0.27
ACGTcount: A:0.33, C:0.21, G:0.06, T:0.41
Consensus pattern (130 bp):
AAACGATCATTTTACCAAACTTTCCAATTTTCGATTTTTCTCTCATTCTAGGTTCAAATAACATT
TTCCGGGATCTAAAACATCATATTTACTTATTTAATTAATTACTATTCAAAACAGTCCTTAACTC
Found at i:45245326 original size:40 final size:40
Alignment explanation
Indices: 45245289--45245420 Score: 142
Period size: 40 Copynumber: 3.3 Consensus size: 40
45245279 GCTACTCGTT
*
45245289 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATT-TAGTAACTCGCA
* *
45245329 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTAGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * * * * * *
45245369 CCAATGCCTTTGAG-CTTAGCCCGGAATTAGTATCTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
45245408 CAAATGCCTTCGG
1 CAAATGCCTTCGG
45245421 ATCTTAGTTT
Statistics
Matches: 77, Mismatches: 14, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
39 30 0.39
40 45 0.58
41 2 0.03
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:45249676 original size:43 final size:43
Alignment explanation
Indices: 45249525--45249677 Score: 114
Period size: 43 Copynumber: 3.6 Consensus size: 43
45249515 TTTTCGTGTC
* * * *
45249525 AGACCACGTTTGGGACGTTGGCATCGACT-TATGATTTACATGTA
1 AGACCACGTCTGGGACATTGGCATC-AATATTTGA-TTACATGTA
** * * * * *
45249569 AGATAATGTCTGGGACATCGTCATC-GTATTTGATTTCATGTA
1 AGACCACGTCTGGGACATTGGCATCAATATTTGATTACATGTA
* * *
45249611 AGACC-CTGTTTCGGACAATGGCATCAATATTTGATTACATGTA
1 AGACCAC-GTCTGGGACATTGGCATCAATATTTGATTACATGTA
* *
45249654 AGACCACGTCTAGGACGTTGGCAT
1 AGACCACGTCTGGGACATTGGCAT
45249678 TGTACTAGCT
Statistics
Matches: 81, Mismatches: 24, Indels: 9
0.71 0.21 0.08
Matches are distributed among these distances:
42 25 0.31
43 37 0.46
44 19 0.23
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.32
Consensus pattern (43 bp):
AGACCACGTCTGGGACATTGGCATCAATATTTGATTACATGTA
Found at i:45252886 original size:27 final size:27
Alignment explanation
Indices: 45252852--45252920 Score: 86
Period size: 27 Copynumber: 2.6 Consensus size: 27
45252842 CCCTAATTTA
* *
45252852 TAAAATGACTGTTATGCCCTTATGCGA-
1 TAAAATGACTGTTATGCCCCTACGC-AC
* *
45252879 TATAATGATTGTTATGCCCCTACGCAC
1 TAAAATGACTGTTATGCCCCTACGCAC
45252906 TAAAATGACTGTTAT
1 TAAAATGACTGTTAT
45252921 TCCTATGTGA
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
26 1 0.03
27 34 0.97
ACGTcount: A:0.30, C:0.19, G:0.16, T:0.35
Consensus pattern (27 bp):
TAAAATGACTGTTATGCCCCTACGCAC
Found at i:45260601 original size:27 final size:27
Alignment explanation
Indices: 45260537--45260610 Score: 87
Period size: 27 Copynumber: 2.7 Consensus size: 27
45260527 CCTCTAGTTG
*
45260537 ATAAAATGACTGTTATGCCCCTATGCT
1 ATAAAATGACTGTTATGCCCCTACGCT
* *
45260564 ATATAAGGACTGTTATGCCCCTACGC-
1 ATAAAATGACTGTTATGCCCCTACGCT
* *
45260590 ACTAAAATGACTATTTTGCCC
1 A-TAAAATGACTGTTATGCCC
45260611 TATGTGATGT
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
26 1 0.03
27 38 0.97
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.31
Consensus pattern (27 bp):
ATAAAATGACTGTTATGCCCCTACGCT
Found at i:45267715 original size:42 final size:43
Alignment explanation
Indices: 45267655--45267749 Score: 124
Period size: 42 Copynumber: 2.2 Consensus size: 43
45267645 ATGATTTATG
* *
45267655 TGTAAGACCATGTTTGGGACA-TCAACATCG-TATTTGATTTCA
1 TGTAAGACCATGTCTGGGACAGT-AACATCGATATTTGATTACA
*
45267697 TGTAAGAGCC-TGTCTGGGACAGTGACATCGATATTTGATTACA
1 TGTAAGA-CCATGTCTGGGACAGTAACATCGATATTTGATTACA
45267740 TGTAAGACCA
1 TGTAAGACCA
45267750 CATCAGGGAC
Statistics
Matches: 46, Mismatches: 3, Indels: 7
0.82 0.05 0.12
Matches are distributed among these distances:
42 25 0.54
43 21 0.46
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.32
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACAGTAACATCGATATTTGATTACA
Found at i:45267759 original size:43 final size:42
Alignment explanation
Indices: 45267679--45267759 Score: 101
Period size: 43 Copynumber: 1.9 Consensus size: 42
45267669 TGGGACATCA
* ** *
45267679 ACATCGTATTTGATTTCATGTAAGAGCCTGTCTGGGACAGTG
1 ACATCGTATTTGATTACATGTAAGAGCCCATCAGGGACAGTG
45267721 ACATCGATATTTGATTACATGTAAGA-CCACATCAGGGAC
1 ACATCG-TATTTGATTACATGTAAGAGCC-CATCAGGGAC
45267760 GTTGGCATTG
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
42 8 0.24
43 25 0.76
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.30
Consensus pattern (42 bp):
ACATCGTATTTGATTACATGTAAGAGCCCATCAGGGACAGTG
Found at i:45273041 original size:27 final size:27
Alignment explanation
Indices: 45272971--45273043 Score: 76
Period size: 27 Copynumber: 2.7 Consensus size: 27
45272961 CCTGGTTTGT
*
45272971 AAAATTACC-AAAGTACCCCCGATTTAC
1 AAAATTACCGAAA-TACCTCCGATTTAC
* *** *
45272998 AGAATTACCGTTTTACCTTCGATTTAC
1 AAAATTACCGAAATACCTCCGATTTAC
45273025 AAAATTACCGAAATACCTC
1 AAAATTACCGAAATACCTC
45273044 TGTAAGGTAG
Statistics
Matches: 34, Mismatches: 11, Indels: 2
0.72 0.23 0.04
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.37, C:0.26, G:0.08, T:0.29
Consensus pattern (27 bp):
AAAATTACCGAAATACCTCCGATTTAC
Found at i:45273831 original size:26 final size:27
Alignment explanation
Indices: 45273802--45273861 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
45273792 CCACATATAT
*
45273802 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
* * *
45273828 ATATCTGTATCTGGTGACTTTGTCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
45273855 ATATCTG
1 ATATCTG
45273862 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.37
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACCTAGCCACA
Found at i:45278350 original size:32 final size:32
Alignment explanation
Indices: 45278313--45278398 Score: 127
Period size: 32 Copynumber: 2.7 Consensus size: 32
45278303 TCTCAATTGC
* *
45278313 GCCTAGACCATCTCAAAATCAATACCAGTTGG
1 GCCTAGCCCATTTCAAAATCAATACCAGTTGG
* *
45278345 GCCTAGCCCATTTCAGAATCAATATCAGTTGG
1 GCCTAGCCCATTTCAAAATCAATACCAGTTGG
*
45278377 GCCTAGCCCATTTCAATATCAA
1 GCCTAGCCCATTTCAAAATCAA
45278399 ACCCATATGA
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
32 48 1.00
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.26
Consensus pattern (32 bp):
GCCTAGCCCATTTCAAAATCAATACCAGTTGG
Found at i:45281166 original size:30 final size:31
Alignment explanation
Indices: 45281132--45281228 Score: 101
Period size: 30 Copynumber: 3.2 Consensus size: 31
45281122 AGCTCACTCC
*
45281132 TAGCTC-ACTTTCAACTCACGAGCTAAACCT
1 TAGCTCAACTTTCAGCTCACGAGCTAAACCT
* * * * *
45281162 TAGCTCAAC-TTCAGCTTAGGAGTTTAGCCT
1 TAGCTCAACTTTCAGCTCACGAGCTAAACCT
* *
45281192 CAGCTCAACTTT-AGCTCACGAGCTAAAGCT
1 TAGCTCAACTTTCAGCTCACGAGCTAAACCT
45281222 TAGCTCA
1 TAGCTCA
45281229 TTTTAGTTTA
Statistics
Matches: 51, Mismatches: 14, Indels: 4
0.74 0.20 0.06
Matches are distributed among these distances:
30 47 0.92
31 4 0.08
ACGTcount: A:0.28, C:0.29, G:0.15, T:0.28
Consensus pattern (31 bp):
TAGCTCAACTTTCAGCTCACGAGCTAAACCT
Found at i:45282881 original size:12 final size:12
Alignment explanation
Indices: 45282864--45282898 Score: 70
Period size: 12 Copynumber: 2.9 Consensus size: 12
45282854 TATACAAGTC
45282864 AAAAAAAATTCA
1 AAAAAAAATTCA
45282876 AAAAAAAATTCA
1 AAAAAAAATTCA
45282888 AAAAAAAATTC
1 AAAAAAAATTC
45282899 GAAATGAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.74, C:0.09, G:0.00, T:0.17
Consensus pattern (12 bp):
AAAAAAAATTCA
Found at i:45283845 original size:9 final size:10
Alignment explanation
Indices: 45283838--45283893 Score: 62
Period size: 11 Copynumber: 5.5 Consensus size: 10
45283828 AAGAGAAAAT
45283838 AAAGAAAAGA
1 AAAGAAAAGA
45283848 AAAGAAAAAGA
1 AAAG-AAAAGA
*
45283859 AAAGAAGA-A
1 AAAGAAAAGA
45283868 AAAGAAAATGA
1 AAAGAAAA-GA
45283879 AATA-AAAAGA
1 AA-AGAAAAGA
45283889 AAAGA
1 AAAGA
45283894 GAGGCAAGAG
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
9 9 0.23
10 12 0.31
11 17 0.44
12 1 0.03
ACGTcount: A:0.79, C:0.00, G:0.18, T:0.04
Consensus pattern (10 bp):
AAAGAAAAGA
Found at i:45283848 original size:5 final size:5
Alignment explanation
Indices: 45283838--45283893 Score: 62
Period size: 5 Copynumber: 11.0 Consensus size: 5
45283828 AAGAGAAAAT
*
45283838 AAAGA AAAGA AAAGAA AAAGA AAAGA AGA-A AAAGA AAATGA AATA-A
1 AAAGA AAAGA AAAG-A AAAGA AAAGA AAAGA AAAGA AAA-GA AA-AGA
45283884 AAAGA AAAGA
1 AAAGA AAAGA
45283894 GAGGCAAGAG
Statistics
Matches: 44, Mismatches: 2, Indels: 10
0.79 0.04 0.18
Matches are distributed among these distances:
4 4 0.09
5 30 0.68
6 9 0.20
7 1 0.02
ACGTcount: A:0.79, C:0.00, G:0.18, T:0.04
Consensus pattern (5 bp):
AAAGA
Found at i:45283857 original size:16 final size:15
Alignment explanation
Indices: 45283838--45283893 Score: 78
Period size: 16 Copynumber: 3.7 Consensus size: 15
45283828 AAGAGAAAAT
45283838 AAAGAAAAGAAAAGAA
1 AAAGAAAAG-AAAGAA
45283854 AAAGAAAAG-AAGAA
1 AAAGAAAAGAAAGAA
*
45283868 AAAGAAAATGAAATAA
1 AAAGAAAA-GAAAGAA
45283884 AAAGAAAAGA
1 AAAGAAAAGA
45283894 GAGGCAAGAG
Statistics
Matches: 37, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
14 13 0.35
15 3 0.08
16 21 0.57
ACGTcount: A:0.79, C:0.00, G:0.18, T:0.04
Consensus pattern (15 bp):
AAAGAAAAGAAAGAA
Found at i:45283870 original size:25 final size:25
Alignment explanation
Indices: 45283842--45283889 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
45283832 GAAAATAAAG
45283842 AAAAGAAAA-GAAAAAGAAAAGAAGA
1 AAAAGAAAATGAAAAA-AAAAGAAGA
*
45283867 AAAAGAAAATGAAATAAAAAGAA
1 AAAAGAAAATGAAAAAAAAAGAA
45283890 AAGAGAGGCA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 16 0.76
26 5 0.24
ACGTcount: A:0.79, C:0.00, G:0.17, T:0.04
Consensus pattern (25 bp):
AAAAGAAAATGAAAAAAAAAGAAGA
Found at i:45283970 original size:12 final size:12
Alignment explanation
Indices: 45283941--45283970 Score: 53
Period size: 11 Copynumber: 2.6 Consensus size: 12
45283931 TTGAGAGAAC
45283941 TTGAAAAAGCCT
1 TTGAAAAAGCCT
45283953 TT-AAAAAGCCT
1 TTGAAAAAGCCT
45283964 TTGAAAA
1 TTGAAAA
45283971 GCAAAAAGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
11 11 0.65
12 6 0.35
ACGTcount: A:0.47, C:0.13, G:0.13, T:0.27
Consensus pattern (12 bp):
TTGAAAAAGCCT
Found at i:45283981 original size:12 final size:12
Alignment explanation
Indices: 45283973--45283997 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
45283963 TTTGAAAAGC
45283973 AAAAAGAAAATG
1 AAAAAGAAAATG
45283985 AAAAAGAAAATG
1 AAAAAGAAAATG
45283997 A
1 A
45283998 GATTGAAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.00, G:0.16, T:0.08
Consensus pattern (12 bp):
AAAAAGAAAATG
Found at i:45283994 original size:18 final size:18
Alignment explanation
Indices: 45283967--45284022 Score: 51
Period size: 18 Copynumber: 3.1 Consensus size: 18
45283957 AAAGCCTTTG
45283967 AAAAGCAAAAAGAAAATGA
1 AAAAG-AAAAAGAAAATGA
* * *
45283986 AAAAGAAAATGAGATTGA
1 AAAAGAAAAAGAAAATGA
* *
45284004 AAAAGAGAACGAAAA-GA
1 AAAAGAAAAAGAAAATGA
45284021 AA
1 AA
45284023 TTTGAGAGTG
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
17 4 0.13
18 21 0.70
19 5 0.17
ACGTcount: A:0.70, C:0.04, G:0.20, T:0.07
Consensus pattern (18 bp):
AAAAGAAAAAGAAAATGA
Found at i:45284007 original size:30 final size:31
Alignment explanation
Indices: 45283973--45284054 Score: 105
Period size: 30 Copynumber: 2.7 Consensus size: 31
45283963 TTTGAAAAGC
*
45283973 AAAAAGAAAATGAAAAAGAAA-ATGAGATTG
1 AAAAAGAAAATGAAAAAGAAATATGAGAGTG
* * *
45284003 AAAAAGAGAACG-AAAAGAAATTTGAGAGTG
1 AAAAAGAAAATGAAAAAGAAATATGAGAGTG
*
45284033 AAAAAGAAGATGAAAAAGAAAT
1 AAAAAGAAAATGAAAAAGAAAT
45284055 TGAAACAAAA
Statistics
Matches: 43, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
29 8 0.19
30 26 0.60
31 9 0.21
ACGTcount: A:0.65, C:0.01, G:0.22, T:0.12
Consensus pattern (31 bp):
AAAAAGAAAATGAAAAAGAAATATGAGAGTG
Found at i:45286187 original size:30 final size:31
Alignment explanation
Indices: 45286153--45286249 Score: 101
Period size: 30 Copynumber: 3.2 Consensus size: 31
45286143 AGCTCACTCC
*
45286153 TAGCTC-ACTTTCAACTCACGAGCTAAACCT
1 TAGCTCAACTTTCAGCTCACGAGCTAAACCT
* * * * *
45286183 TAGCTCAAC-TTCAGCTTAGGAGTTTAGCCT
1 TAGCTCAACTTTCAGCTCACGAGCTAAACCT
* *
45286213 CAGCTCAACTTT-AGCTCACGAGCTAAAGCT
1 TAGCTCAACTTTCAGCTCACGAGCTAAACCT
45286243 TAGCTCA
1 TAGCTCA
45286250 TTTTAGTTTA
Statistics
Matches: 51, Mismatches: 14, Indels: 4
0.74 0.20 0.06
Matches are distributed among these distances:
30 47 0.92
31 4 0.08
ACGTcount: A:0.28, C:0.29, G:0.15, T:0.28
Consensus pattern (31 bp):
TAGCTCAACTTTCAGCTCACGAGCTAAACCT
Found at i:45305565 original size:39 final size:38
Alignment explanation
Indices: 45305436--45305623 Score: 198
Period size: 39 Copynumber: 4.8 Consensus size: 38
45305426 CGAATACACC
* * * * *
45305436 ACACCAGGCATGATTGCTCTTCGGGACCTAGCCCAGATATA
1 ACACCA-GCACGAATGCTCTTC-GGACTTAG-CCGGACATA
* * *
45305477 ACACCAGCACGAATGCTCTTCGGACTTAACCCTGA-TTA
1 ACACCAGCACGAATGCTCTTCGGACTT-AGCCGGACATA
* * * *
45305515 ACTCTAACACGAATGCTCTCCGAGACTTAGCCGGACATA
1 ACACCAGCACGAATGCTCTTCG-GACTTAGCCGGACATA
45305554 ACACCAGCACGAATGCTCTTCGGACTTAGCCCGGACATA
1 ACACCAGCACGAATGCTCTTCGGACTTAG-CCGGACATA
45305593 ACACCAGCACGAATGCTCTTCAGGACTTAGC
1 ACACCAGCACGAATGCTCTTC-GGACTTAGC
45305624 TCGGCTATAT
Statistics
Matches: 125, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
38 32 0.26
39 65 0.52
40 22 0.18
41 6 0.05
ACGTcount: A:0.29, C:0.31, G:0.19, T:0.21
Consensus pattern (38 bp):
ACACCAGCACGAATGCTCTTCGGACTTAGCCGGACATA
Found at i:45306968 original size:37 final size:37
Alignment explanation
Indices: 45306912--45306997 Score: 131
Period size: 37 Copynumber: 2.4 Consensus size: 37
45306902 TAGTATATGA
45306912 GTCTTA-CCGGAAAAAATCTCCACACGTAGTCATC-GG
1 GTCTTACCCGGAAAAAATCTCCACA-GTAGTCATCGGG
* *
45306948 GTCTTACCCGGACATAATCTCCACAGTAGTCATCGGG
1 GTCTTACCCGGAAAAAATCTCCACAGTAGTCATCGGG
45306985 GTCTTACCCGGAA
1 GTCTTACCCGGAA
45306998 TATATTTCCA
Statistics
Matches: 45, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
36 15 0.33
37 30 0.67
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (37 bp):
GTCTTACCCGGAAAAAATCTCCACAGTAGTCATCGGG
Found at i:45307202 original size:48 final size:48
Alignment explanation
Indices: 45307135--45307375 Score: 389
Period size: 48 Copynumber: 5.0 Consensus size: 48
45307125 TGGCCCATAT
* * *
45307135 ATATCACACATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCAC
1 ATAT-ACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
*
45307184 ATATACATATCTCATACATA-TTCACACTAGCCATTCGG-TTTA-CAC
1 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
45307229 ATATTACATATCTCATACATATTTCACATTAGCCATTCGGCTTTTACCAC
1 ATA-TACATATCTCATACATATTTCACATTAGCCATTCGGC-TTTACCAC
45307279 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
1 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
*
45307327 ATATACATATCTCATATATATTTCACATTAGCCATTCGGCTTTACCAC
1 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
45307375 A
1 A
45307376 CACATATATA
Statistics
Matches: 183, Mismatches: 4, Indels: 11
0.92 0.02 0.06
Matches are distributed among these distances:
45 6 0.03
46 21 0.11
47 35 0.19
48 70 0.38
49 45 0.25
50 6 0.03
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.35
Consensus pattern (48 bp):
ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
Found at i:45307355 original size:97 final size:93
Alignment explanation
Indices: 45307135--45307375 Score: 383
Period size: 97 Copynumber: 2.5 Consensus size: 93
45307125 TGGCCCATAT
* * *
45307135 ATATCACACATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 ATAT-ACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATA
45307200 CATATTCACACTAGCCATTCGGTTTACAC
65 CATATTCACACTAGCCATTCGGTTTACAC
45307229 ATATTACATATCTCATACATATTTCACATTAGCCATTCGGCTTTTACCACATATACATATCTCAT
1 ATA-TACATATCTCATACATATTTCACATTAGCCATTCGGC-TTTACCACATATACATATCTCAT
*
45307294 ACATATTTCACATTAGCCATTCGGCTTTACCAC
64 ACATA-TTCACACTAGCCATTCGG-TTTA-CAC
*
45307327 ATATACATATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACA
1 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACA
45307376 CACATATATA
Statistics
Matches: 137, Mismatches: 5, Indels: 8
0.91 0.03 0.05
Matches are distributed among these distances:
94 36 0.26
95 29 0.21
96 26 0.19
97 40 0.29
98 6 0.04
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.35
Consensus pattern (93 bp):
ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATAC
ATATTCACACTAGCCATTCGGTTTACAC
Found at i:45315209 original size:79 final size:78
Alignment explanation
Indices: 45315073--45315329 Score: 266
Period size: 79 Copynumber: 3.3 Consensus size: 78
45315063 TTGAATGCTG
* * * * * * *
45315073 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGATTAAGAT-CCGAAGGCCTT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTAATAAATCCGGGTTAAG-TCCCGAAGGCATT
45315137 TGTGCGAGTACTAAA
64 TGTGCGAGTACTAAA
* *
45315152 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTAATAAATCCGGGTTAAGTCCCGAAGGCATTT
**
45315217 GTGCGAGTTGTTAAA
65 GTGCGAG-TACTAAA
* * * * *
45315232 TCCGGGTTAAGTCCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTAATAAATCCGGGTTAAGTCCCGAAGGCATTTG
** * *
45315297 AACGAGGAGCTATA
66 TGCGAGTA-CTAAA
*
45315311 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
45315330 TACGTGATTT
Statistics
Matches: 150, Mismatches: 24, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
78 16 0.11
79 101 0.67
80 33 0.22
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (78 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTAATAAATCCGGGTTAAGTCCCGAAGGCATTTG
TGCGAGTACTAAA
Found at i:45315285 original size:39 final size:40
Alignment explanation
Indices: 45315073--45315294 Score: 254
Period size: 40 Copynumber: 5.6 Consensus size: 40
45315063 TTGAATGCTG
* * * * * *
45315073 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAA
* * *
45315113 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAG-TACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
*
45315152 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
**
45315192 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
*
45315232 TCCGGGTTAAGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* * *
45315271 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
45315295 TGAACGAGGA
Statistics
Matches: 161, Mismatches: 17, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
38 1 0.01
39 64 0.40
40 88 0.55
41 8 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:45315285 original size:119 final size:119
Alignment explanation
Indices: 45315073--45315294 Score: 281
Period size: 119 Copynumber: 1.9 Consensus size: 119
45315063 TTGAATGCTG
* * *
45315073 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGATTAAGATCCGAAGGCCTTT
1 TCCGGGCTAAGTCCCGAAGGCTTCGTGCTAAGTGAATAAATCCGGATTAAGATCCGAAGGCCATT
* *
45315138 GTGCGAGTACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
66 GTGCGAGTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * * *
45315192 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTG-TTAAATCCGGGTTAAG-TCCCGAAGG-C
1 TCCGGGCTAAGTCCCGAAGGC-TTCGTGCTAAG-TGAATAAATCCGGATTAAGAT-CCGAAGGCC
* *
45315253 ATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
63 ATTGTGCGAG-TACTAAAACCGGGCTAAGTCCCGAAGGCATT
45315295 TGAACGAGGA
Statistics
Matches: 88, Mismatches: 11, Indels: 8
0.82 0.10 0.07
Matches are distributed among these distances:
118 10 0.11
119 70 0.80
120 8 0.09
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (119 bp):
TCCGGGCTAAGTCCCGAAGGCTTCGTGCTAAGTGAATAAATCCGGATTAAGATCCGAAGGCCATT
GTGCGAGTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:45315314 original size:119 final size:119
Alignment explanation
Indices: 45315073--45315329 Score: 265
Period size: 119 Copynumber: 2.2 Consensus size: 119
45315063 TTGAATGCTG
* * * *
45315073 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGATTAAGATCCGAAGGCCTTT
1 TCCGGGTTAAGTCCCGAAGGCTTCGTGCTAAGTGAATAAATCCGGATTAAGATCCGAAGGCCATT
* * ** * *
45315138 GTGCGAGTACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
66 GTGCGAGTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAA
* * *
45315192 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTG-TTAAATCCGGGTTAAG-TCCCGAAGG-C
1 TCCGGGTTAAGTCCCGAAGGC-TTCGTGCTAAG-TGAATAAATCCGGATTAAGAT-CCGAAGGCC
* * * *
45315253 ATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATA
63 ATTGTGCGAG-TACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGA-CTAAA
*
45315311 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
45315330 TACGTGATTT
Statistics
Matches: 115, Mismatches: 18, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
118 26 0.23
119 81 0.70
120 8 0.07
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTCGTGCTAAGTGAATAAATCCGGATTAAGATCCGAAGGCCATT
GTGCGAGTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAA
Found at i:45317260 original size:28 final size:28
Alignment explanation
Indices: 45317184--45317274 Score: 87
Period size: 28 Copynumber: 3.2 Consensus size: 28
45317174 ATGTCTATAT
* *
45317184 ACATGCATATGGTCCACTAGGCCCAATC
1 ACATTCATATGGCCCACTAGGCCCAATC
** * *
45317212 TA-ATTCATATAACCTATTAGGCCCAAATC
1 -ACATTCATATGGCCCACTAGGCCC-AATC
45317241 ACATTCATATGGCCCA-TAGGCCCCAATC
1 ACATTCATATGGCCCACTAGG-CCCAATC
45317269 ACATTC
1 ACATTC
45317275 CTAGTCATGC
Statistics
Matches: 50, Mismatches: 9, Indels: 7
0.76 0.14 0.11
Matches are distributed among these distances:
28 31 0.62
29 19 0.38
ACGTcount: A:0.32, C:0.31, G:0.12, T:0.25
Consensus pattern (28 bp):
ACATTCATATGGCCCACTAGGCCCAATC
Found at i:45330903 original size:36 final size:35
Alignment explanation
Indices: 45330863--45330930 Score: 84
Period size: 36 Copynumber: 1.9 Consensus size: 35
45330853 GAAATACCCC
* *
45330863 TGTAT-TATGTATGACTATTTTTTAGCATGACATCTT
1 TGTATATACGTATGA-TATTATTT-GCATGACATCTT
*
45330899 TGTATATACGTATGATATTATTTGCATTACAT
1 TGTATATACGTATGATATTATTTGCATGACAT
45330931 GGGGTGGGAT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
35 8 0.29
36 12 0.43
37 8 0.29
ACGTcount: A:0.28, C:0.10, G:0.13, T:0.49
Consensus pattern (35 bp):
TGTATATACGTATGATATTATTTGCATGACATCTT
Found at i:45336484 original size:39 final size:39
Alignment explanation
Indices: 45336386--45336513 Score: 136
Period size: 39 Copynumber: 3.3 Consensus size: 39
45336376 GGTCTTTAAC
* *
45336386 CCGGATATTTTTCCAGCACT-TAGCCTGCCGACCTCA-AGT
1 CCGGATATTTTTCCAACA-TATAGCCTGCGGACCTCATA-T
* * * *
45336425 TCGAATATATTT-CAAGCATATAGCCTGCGGATCTCATAT
1 CCGGATATTTTTCCAA-CATATAGCCTGCGGACCTCATAT
* *
45336464 CCGGATATTTTTCCAACATATAGCCTGTGGACCTCATGT
1 CCGGATATTTTTCCAACATATAGCCTGCGGACCTCATAT
45336503 CCGGATATTTT
1 CCGGATATTTT
45336514 CAATCTCATA
Statistics
Matches: 73, Mismatches: 12, Indels: 8
0.78 0.13 0.09
Matches are distributed among these distances:
38 3 0.04
39 66 0.90
40 4 0.05
ACGTcount: A:0.24, C:0.26, G:0.17, T:0.33
Consensus pattern (39 bp):
CCGGATATTTTTCCAACATATAGCCTGCGGACCTCATAT
Found at i:45344462 original size:39 final size:38
Alignment explanation
Indices: 45344407--45344527 Score: 188
Period size: 39 Copynumber: 3.1 Consensus size: 38
45344397 ACCCGAATAT
** *
45344407 TTTTCCAGCACGTAGCCTGCGGACCTCAAGTCCGGATA
1 TTTTCCAGCATATAGCCTGCGGACCTCATGTCCGGATA
*
45344445 TATTTCTAGCATATAGCCTGCGGACCTCATGTCCGGATA
1 T-TTTCCAGCATATAGCCTGCGGACCTCATGTCCGGATA
45344484 TTTTTCCAGCATATAGCCTGCGGACCTCATGTCCGGATA
1 -TTTTCCAGCATATAGCCTGCGGACCTCATGTCCGGATA
45344523 TTTTC
1 TTTTC
45344528 AATCTCATAC
Statistics
Matches: 76, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
38 6 0.08
39 69 0.91
40 1 0.01
ACGTcount: A:0.21, C:0.28, G:0.21, T:0.31
Consensus pattern (38 bp):
TTTTCCAGCATATAGCCTGCGGACCTCATGTCCGGATA
Done.