Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 137 of 362
Found at i:45353837 original size:12 final size:12
Alignment explanation
Indices: 45353820--45353844 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
45353810 AACTCTGAAT
45353820 TCTAAATCACAC
1 TCTAAATCACAC
45353832 TCTAAATCACAC
1 TCTAAATCACAC
45353844 T
1 T
45353845 GAGCTCGTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.32, G:0.00, T:0.28
Consensus pattern (12 bp):
TCTAAATCACAC
Found at i:45355263 original size:29 final size:29
Alignment explanation
Indices: 45355228--45355322 Score: 163
Period size: 29 Copynumber: 3.3 Consensus size: 29
45355218 GCCTAATCTT
*
45355228 ATTCATATGGCCCATTAGGCCCAAATCAA
1 ATTCATATGGCCCATTAGGCCCAAATCAC
*
45355257 ATTCATATGGCCCATTAGACCCAAATCAC
1 ATTCATATGGCCCATTAGGCCCAAATCAC
*
45355286 ATTCATACGGCCCATTAGGCCCAAATCAC
1 ATTCATATGGCCCATTAGGCCCAAATCAC
45355315 ATTCATAT
1 ATTCATAT
45355323 ACATGCTTTC
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 61 1.00
ACGTcount: A:0.34, C:0.29, G:0.12, T:0.25
Consensus pattern (29 bp):
ATTCATATGGCCCATTAGGCCCAAATCAC
Found at i:45357853 original size:27 final size:27
Alignment explanation
Indices: 45357815--45358183 Score: 277
Period size: 27 Copynumber: 13.6 Consensus size: 27
45357805 TTAGTTTACC
* *
45357815 AAATTACTAAAATTCCCTCAATTTGTA
1 AAATTACTAAAATACCCTCGATTTGTA
*
45357842 AAATTACTAAAATACCC-CTGGTTTGTA
1 AAATTACTAAAATACCCTC-GATTTGTA
* * *
45357869 AAATTACAAAAATACCCT-TAGTTTGTG
1 AAATTACTAAAATACCCTCGA-TTTGTA
* *
45357896 AAATTACCAAAATATCCCT-GATTTGTG
1 AAATTACTAAAATA-CCCTCGATTTGTA
* * * *
45357923 CAATTACTGAAATACCCTCAACTTGTA
1 AAATTACTAAAATACCCTCGATTTGTA
* *
45357950 AAATTACCAAAATAACCCT-GATTTGTG
1 AAATTACTAAAAT-ACCCTCGATTTGTA
* *
45357977 AAATTACTGAAATACCCTCGACTTGTA
1 AAATTACTAAAATACCCTCGATTTGTA
* * * *
45358004 AAATTAAC-AAAATAACCTTGGTTTATA
1 AAATT-ACTAAAATACCCTCGATTTGTA
* * *
45358031 AAATTACCAAAATACCC-CTAATTTGTG
1 AAATTACTAAAATACCCTC-GATTTGTA
* *
45358058 AAATTA-TCGAAATACCCTC-AGTTTTTA
1 AAATTACT-AAAATACCCTCGA-TTTGTA
*
45358085 AAATTACTGAAATACCCTCGATTTGTA
1 AAATTACTAAAATACCCTCGATTTGTA
* * *
45358112 AAATTATTGAAATACCCTCGACTTGTAA
1 AAATTACTAAAATACCCTCGATTTGT-A
* * * **
45358140 AAATTACCAAAGTACCCCCGATTTACA
1 AAATTACTAAAATACCCTCGATTTGTA
* *
45358167 AAATTATTGAAATACCC
1 AAATTACTAAAATACCC
45358184 CTATAGGGTA
Statistics
Matches: 270, Mismatches: 56, Indels: 32
0.75 0.16 0.09
Matches are distributed among these distances:
26 13 0.05
27 223 0.83
28 34 0.13
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.32
Consensus pattern (27 bp):
AAATTACTAAAATACCCTCGATTTGTA
Found at i:45358198 original size:27 final size:27
Alignment explanation
Indices: 45358168--45358253 Score: 136
Period size: 27 Copynumber: 3.2 Consensus size: 27
45358158 CGATTTACAA
45358168 AATTATTGAAATACCCCTATAGGGTAG
1 AATTATTGAAATACCCCTATAGGGTAG
* *
45358195 AATTATCGAAATACCCCTATAGCGTAG
1 AATTATTGAAATACCCCTATAGGGTAG
* *
45358222 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTATTGAAATACCCCTATAGGGTAG
45358249 AATTA
1 AATTA
45358254 CCGAGATACC
Statistics
Matches: 53, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 53 1.00
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.28
Consensus pattern (27 bp):
AATTATTGAAATACCCCTATAGGGTAG
Found at i:45358273 original size:27 final size:27
Alignment explanation
Indices: 45358175--45358282 Score: 135
Period size: 27 Copynumber: 4.0 Consensus size: 27
45358165 CAAAATTATT
* *
45358175 GAAATACCCCTATAGGGTAGAATTATC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
45358202 GAAATACCCCTATAGCGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
45358229 GAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * * *
45358256 GAGATACCCTTGTGGGGTAAAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
45358283 ATTTTGCCCT
Statistics
Matches: 71, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 71 1.00
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.25
Consensus pattern (27 bp):
GAAATACCCCTGTAGGGTAGAATTACC
Found at i:45358521 original size:25 final size:25
Alignment explanation
Indices: 45358487--45358556 Score: 115
Period size: 25 Copynumber: 2.8 Consensus size: 25
45358477 AGGAAGTGCT
*
45358487 AAAAGGGCTTTGCCCCAGTTT-TCCG
1 AAAAGGGCTTTGCCCCAGTTTAT-CA
45358512 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
45358537 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
45358557 ATTAAAAGAG
Statistics
Matches: 43, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
25 42 0.98
26 1 0.02
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCA
Found at i:45358569 original size:24 final size:23
Alignment explanation
Indices: 45358486--45358583 Score: 99
Period size: 25 Copynumber: 4.0 Consensus size: 23
45358476 GAGGAAGTGC
45358486 TAAAAGGGCTTTGCCCCAGTT-T
1 TAAAAGGGCTTTGCCCCAGTTAT
45358508 TCCGAAAAGGGCTTTGCCCCAGTTTAT
1 T---AAAAGGGCTTTGCCCCAG-TTAT
*
45358535 CAAAAAGGGCTTTGCCCCAGTTAT
1 -TAAAAGGGCTTTGCCCCAGTTAT
**
45358559 TAAAAGAGGCTAGGCCTCCAGTTAT
1 TAAAAG-GGCTTTGCC-CCAGTTAT
45358584 ATGATAAAGC
Statistics
Matches: 64, Mismatches: 4, Indels: 13
0.79 0.05 0.16
Matches are distributed among these distances:
22 1 0.02
23 5 0.08
24 11 0.17
25 44 0.69
26 2 0.03
27 1 0.02
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28
Consensus pattern (23 bp):
TAAAAGGGCTTTGCCCCAGTTAT
Found at i:45364224 original size:27 final size:27
Alignment explanation
Indices: 45364207--45364384 Score: 115
Period size: 27 Copynumber: 6.6 Consensus size: 27
45364197 ATATTAAGTC
45364207 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
* ** *
45364234 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTCAGTGCTATATAATCAACT
* * *
45364261 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
* *** ** *
45364289 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTCAGTGCTATATAATCAACT
* * **
45364316 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTCAGTGCTAT-ATAATCAACT
* * * * *
45364343 CGCACACTTAGTGCAACATACTCAAAT
1 CGCACACTCAGTGCTATATAATCAACT
*
45364370 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
45364385 GTACAATTTA
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 103 0.81
28 24 0.19
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:45364346 original size:82 final size:81
Alignment explanation
Indices: 45364228--45364383 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
45364218 TGCTATATAA
* * *
45364228 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATACTCAAA-TCGCA
45364293 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
45364310 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATACTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATACTCAAATCGCA
45364374 CACTTAGTGC
65 CACTTAGTGC
45364384 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 16 0.24
82 50 0.76
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATACTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:45371852 original size:27 final size:27
Alignment explanation
Indices: 45371835--45372012 Score: 115
Period size: 27 Copynumber: 6.6 Consensus size: 27
45371825 ATATTAAGTC
45371835 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
* ** *
45371862 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTCAGTGCTATATAATCAACT
* * *
45371889 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
* *** ** *
45371917 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTCAGTGCTATATAATCAACT
* * **
45371944 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTCAGTGCTAT-ATAATCAACT
* * * * *
45371971 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTCAGTGCTATATAATCAACT
*
45371998 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
45372013 GTACAATTTA
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 103 0.81
28 24 0.19
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:45371974 original size:82 final size:81
Alignment explanation
Indices: 45371856--45372011 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
45371846 TGCTATATAA
* *
45371856 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
45371921 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
45371938 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
45372002 CACTTAGTGC
65 CACTTAGTGC
45372012 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:45371995 original size:54 final size:54
Alignment explanation
Indices: 45371835--45372011 Score: 205
Period size: 54 Copynumber: 3.3 Consensus size: 54
45371825 ATATTAAGTC
* * * *
45371835 CGCACACTCAGTGCTAT-ATAATCAACTCGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGC-ATCATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
* ** * *
45371889 CGCACACTTAGTGC-TACATAGTCAAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCAT-CATAATC-AACTCGCACACTTAGTGCAACATAGTCAAAT
* **
45371944 CGCACACTTAGTGCATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCATCATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
45371998 CGCACACTTAGTGC
1 CGCACACTTAGTGC
45372012 TGTACAATTT
Statistics
Matches: 104, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
52 1 0.01
54 57 0.55
55 45 0.43
56 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (54 bp):
CGCACACTTAGTGCATCATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
Found at i:45381121 original size:15 final size:15
Alignment explanation
Indices: 45381101--45381131 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
45381091 CTATAGACTC
45381101 TATAATGAGCCTATT
1 TATAATGAGCCTATT
45381116 TATAATGAGCCTATT
1 TATAATGAGCCTATT
45381131 T
1 T
45381132 GCAATAGAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.32, C:0.13, G:0.13, T:0.42
Consensus pattern (15 bp):
TATAATGAGCCTATT
Found at i:45392007 original size:40 final size:39
Alignment explanation
Indices: 45391930--45392015 Score: 100
Period size: 40 Copynumber: 2.2 Consensus size: 39
45391920 TAACGACTTA
* **
45391930 TCGGCCAAAATGGCACTTAGTGTGCCGTTCGAAATAGCT
1 TCGGCTAAAATGGCACTTAGTGTGCAATTCGAAATAGCT
* * *
45391969 TCGGCTAAAAGTGGCACTTGGTGTGCAATTTGAGATAGCT
1 TCGGCTAAAA-TGGCACTTAGTGTGCAATTCGAAATAGCT
*
45392009 TTGGCTA
1 TCGGCTA
45392016 CATTTATATA
Statistics
Matches: 39, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
39 9 0.23
40 30 0.77
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.29
Consensus pattern (39 bp):
TCGGCTAAAATGGCACTTAGTGTGCAATTCGAAATAGCT
Found at i:45416903 original size:10 final size:10
Alignment explanation
Indices: 45416881--45416932 Score: 61
Period size: 10 Copynumber: 5.1 Consensus size: 10
45416871 AAATCTGTCG
*
45416881 AAAA-TAATC
1 AAAATTAATT
45416890 AAAATTAATT
1 AAAATTAATT
45416900 AAAATTAATTAT
1 AAAATTAA-T-T
45416912 AAAATTAATT
1 AAAATTAATT
*
45416922 AAAATTCATT
1 AAAATTAATT
45416932 A
1 A
45416933 TCTTAATAAT
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
9 4 0.11
10 23 0.61
11 2 0.05
12 9 0.24
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.37
Consensus pattern (10 bp):
AAAATTAATT
Found at i:45416916 original size:12 final size:12
Alignment explanation
Indices: 45416890--45416922 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
45416880 GAAAATAATC
45416890 AAAATTAA-T-T
1 AAAATTAATTAT
45416900 AAAATTAATTAT
1 AAAATTAATTAT
45416912 AAAATTAATTA
1 AAAATTAATTA
45416923 AAATTCATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
10 8 0.38
11 1 0.05
12 12 0.57
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (12 bp):
AAAATTAATTAT
Found at i:45416942 original size:22 final size:22
Alignment explanation
Indices: 45416890--45416933 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
45416880 GAAAATAATC
45416890 AAAATTAATTAAAATTAATTAT
1 AAAATTAATTAAAATTAATTAT
*
45416912 AAAATTAATTAAAATTCATTAT
1 AAAATTAATTAAAATTAATTAT
45416934 CTTAATAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (22 bp):
AAAATTAATTAAAATTAATTAT
Found at i:45420864 original size:6 final size:6
Alignment explanation
Indices: 45420853--45421026 Score: 121
Period size: 6 Copynumber: 28.8 Consensus size: 6
45420843 AACCAAAATG
* * *
45420853 AGAATC AGAATC TGAATC AGTAA-C AGAATC AGAATT AG-ATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
* * *
45420900 AGTAA-C AGAATC AAAATT AG-GTGAC AGAATC AGAATC AGAATC AGTAA-C
1 AG-AATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC AG-AATC
* *
45420949 AGAATC AGAATC AGAATC AGTATT AGTAA-C AGAATC AGAATC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC
* *
45420997 AGAATT ACGTGA-C AGAATC AGAATC AGAAT
1 AGAATC A-G-AATC AGAATC AGAATC AGAAT
45421027 GTGAATGTAA
Statistics
Matches: 131, Mismatches: 20, Indels: 34
0.71 0.11 0.18
Matches are distributed among these distances:
5 13 0.10
6 105 0.80
7 10 0.08
8 3 0.02
ACGTcount: A:0.48, C:0.14, G:0.17, T:0.21
Consensus pattern (6 bp):
AGAATC
Found at i:45420880 original size:24 final size:24
Alignment explanation
Indices: 45420853--45421001 Score: 144
Period size: 24 Copynumber: 6.2 Consensus size: 24
45420843 AACCAAAATG
*
45420853 AGAATCAGAATCTGAATCAGTAAC
1 AGAATCAGAATCAGAATCAGTAAC
* * **
45420877 AGAATCAGAATTAG-ATCAATATT
1 AGAATCAGAATCAGAATCAGTAAC
* * *
45420900 AGTAA-CAGAATCAAAATTAGGTGAC
1 AG-AATCAGAATCAGAATCA-GTAAC
45420925 AGAATCAGAATCAGAATCAGTAAC
1 AGAATCAGAATCAGAATCAGTAAC
**
45420949 AGAATCAGAATCAGAATCAGTATT
1 AGAATCAGAATCAGAATCAGTAAC
45420973 AGTAA-CAGAATCAGAATCAG-AATC
1 AG-AATCAGAATCAGAATCAGTAA-C
45420997 AGAAT
1 AGAAT
45421002 TACGTGACAG
Statistics
Matches: 99, Mismatches: 19, Indels: 14
0.75 0.14 0.11
Matches are distributed among these distances:
23 18 0.18
24 64 0.65
25 17 0.17
ACGTcount: A:0.48, C:0.13, G:0.17, T:0.21
Consensus pattern (24 bp):
AGAATCAGAATCAGAATCAGTAAC
Found at i:45420960 original size:30 final size:30
Alignment explanation
Indices: 45420924--45421026 Score: 170
Period size: 30 Copynumber: 3.4 Consensus size: 30
45420914 AATTAGGTGA
*
45420924 CAGAATCAGAATCAGAATCAGTAACAGAAT
1 CAGAATCAGAATCAGAATTAGTAACAGAAT
*
45420954 CAGAATCAGAATCAGTATTAGTAACAGAAT
1 CAGAATCAGAATCAGAATTAGTAACAGAAT
*
45420984 CAGAATCAGAATCAGAATTACGTGACAGAAT
1 CAGAATCAGAATCAGAATTA-GTAACAGAAT
45421015 CAGAATCAGAAT
1 CAGAATCAGAAT
45421027 GTGAATGTAA
Statistics
Matches: 68, Mismatches: 4, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
30 47 0.69
31 21 0.31
ACGTcount: A:0.48, C:0.16, G:0.17, T:0.19
Consensus pattern (30 bp):
CAGAATCAGAATCAGAATTAGTAACAGAAT
Found at i:45421208 original size:27 final size:27
Alignment explanation
Indices: 45421144--45421217 Score: 80
Period size: 27 Copynumber: 2.8 Consensus size: 27
45421134 AGCATGGCTG
* * *
45421144 CCAGAA-CAGATATCGTGACAGAGTCA
1 CCAGAATCAGATATTGTGGCAGAGCCA
45421170 CCAGATAT-AGATATTGTGGCAGAGCCA
1 CCAGA-ATCAGATATTGTGGCAGAGCCA
* *
45421197 CTAGAATCAGATAATGTGGCA
1 CCAGAATCAGATATTGTGGCA
45421218 AACCCACCTA
Statistics
Matches: 40, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
26 7 0.17
27 33 0.82
ACGTcount: A:0.36, C:0.19, G:0.24, T:0.20
Consensus pattern (27 bp):
CCAGAATCAGATATTGTGGCAGAGCCA
Found at i:45421430 original size:22 final size:22
Alignment explanation
Indices: 45421382--45421440 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
45421372 GTAAATACGT
*
45421382 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
45421404 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
45421426 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
45421441 TAACAACGGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:45421607 original size:27 final size:26
Alignment explanation
Indices: 45421528--45421610 Score: 103
Period size: 27 Copynumber: 3.1 Consensus size: 26
45421518 TCGATCGGTC
* * * *
45421528 AACAGATATTATGACAGAGTCACCAA
1 AACAGATATTGTGGCAGAGCCACCAG
45421554 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
45421581 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
45421608 AAC
1 AAC
45421611 GCTTCCTCCG
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
26 8 0.16
27 42 0.84
ACGTcount: A:0.39, C:0.22, G:0.20, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:45421881 original size:54 final size:54
Alignment explanation
Indices: 45421823--45422004 Score: 226
Period size: 54 Copynumber: 3.4 Consensus size: 54
45421813 ATTTTACCCC
* * * *
45421823 ACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCGATATTTCTA-CCTT
1 ACAAGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTCGATAATTCTATCC-T
* * *
45421877 ACAAGGGTATGTC-GATAATTCTACCCTATAGGGGTATTTTGGTAATTCTATCCT
1 ACAAGGGTATTTCAG-TAATTCTACCCTATAGGGGTATTTCGATAATTCTATCCT
* *
45421931 ATAAGGGTATTTTAGTAATTCTACCCTATAGGGGTATTTCAGA-AATTCTATCCT
1 ACAAGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTC-GATAATTCTATCCT
*
45421985 ACAGGGGTATTTCAGTAATT
1 ACAAGGGTATTTCAGTAATT
45422005 TCACAATCAA
Statistics
Matches: 111, Mismatches: 13, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
53 1 0.01
54 106 0.95
55 4 0.04
ACGTcount: A:0.27, C:0.17, G:0.19, T:0.37
Consensus pattern (54 bp):
ACAAGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTCGATAATTCTATCCT
Found at i:45421953 original size:81 final size:81
Alignment explanation
Indices: 45421812--45422004 Score: 201
Period size: 81 Copynumber: 2.4 Consensus size: 81
45421802 GCAAAATGGT
* * * * * * * *
45421812 AATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCGATATTTCTACCTT
1 AATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTAGATAATTCTACCCT
45421877 ACAAGGGTATGTC-GA
66 ACAAGGGTATGTCAGA
* * * *
45421892 TAATTCTACCCTATAGGGGTATTTTGGTAATTCTATCCTATAAGGGTATTTTAG-TAATTCTACC
1 -AATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTA-TTTAGATAATTCTACC
* * *
45421956 CTATAGGGGTATTTCAGA
64 CTACAAGGGTATGTCAGA
* *
45421974 AATTCTATCCTACAGGGGTATTTCAGTAATT
1 AATTCTACCCTACAGGGGTATTTCGGTAATT
45422005 TCACAATCAA
Statistics
Matches: 91, Mismatches: 19, Indels: 4
0.80 0.17 0.04
Matches are distributed among these distances:
81 85 0.93
82 6 0.07
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.37
Consensus pattern (81 bp):
AATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTAGATAATTCTACCCT
ACAAGGGTATGTCAGA
Found at i:45421995 original size:27 final size:27
Alignment explanation
Indices: 45421812--45422004 Score: 156
Period size: 27 Copynumber: 7.1 Consensus size: 27
45421802 GCAAAATGGT
* * * * * *
45421812 AATTTTACCCCACAAGGGTATCTCGGT
1 AATTCTACCCTACAGGGGTATTTCAGA
45421839 AATTCTACCCTACAGGGGTATTTC-GA
1 AATTCTACCCTACAGGGGTATTTCAGA
* * * *
45421865 TATTTCTACCTTACAAGGGTATGTC-GA
1 -AATTCTACCCTACAGGGGTATTTCAGA
* ** *
45421892 TAATTCTACCCTATAGGGGTATTTTGGT
1 -AATTCTACCCTACAGGGGTATTTCAGA
* * * * *
45421920 AATTCTATCCTATAAGGGTATTTTAGT
1 AATTCTACCCTACAGGGGTATTTCAGA
*
45421947 AATTCTACCCTATAGGGGTATTTCAGA
1 AATTCTACCCTACAGGGGTATTTCAGA
* *
45421974 AATTCTATCCTACAGGGGTATTTCAGT
1 AATTCTACCCTACAGGGGTATTTCAGA
45422001 AATT
1 AATT
45422005 TCACAATCAA
Statistics
Matches: 138, Mismatches: 26, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
26 1 0.01
27 136 0.99
28 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.37
Consensus pattern (27 bp):
AATTCTACCCTACAGGGGTATTTCAGA
Found at i:45422039 original size:27 final size:27
Alignment explanation
Indices: 45422009--45422177 Score: 230
Period size: 27 Copynumber: 6.3 Consensus size: 27
45421999 GTAATTTCAC
*
45422009 AATCAAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
* * *
45422036 AATCGAGGGTAAAACGATAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTATA
45422063 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
* ** *
45422090 AATCGATGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
* * *
45422117 AATTGAGGGTAAAATGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
*
45422144 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
45422171 AATCGAG
1 AATCGAG
45422178 AGTACTTTGG
Statistics
Matches: 126, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 126 1.00
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTATA
Found at i:45424537 original size:43 final size:42
Alignment explanation
Indices: 45424490--45424621 Score: 113
Period size: 43 Copynumber: 3.1 Consensus size: 42
45424480 TATAAACTCA
* *
45424490 GACCACTCAACGAGCTCAGATGCTCACATCTATAATGAACTTG
1 GACCACTCAACGAGCTCAGATG-TCACATATATAACGAACTTG
* * * * *
45424533 GACCACTCAATGTGCTCGGATGTCTCATATATCACGAACTTG
1 GACCACTCAACGAGCTCAGATGTCACATATATAACGAACTTG
* * * * * *
45424575 GATCACTCAACAAGTTTC-GATTCTCACATATATCACGAACTCG
1 GACCACTCAACGAG-CTCAGA-TGTCACATATATAACGAACTTG
45424618 GACC
1 GACC
45424622 GCTTAATGAG
Statistics
Matches: 71, Mismatches: 16, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
42 28 0.39
43 43 0.61
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (42 bp):
GACCACTCAACGAGCTCAGATGTCACATATATAACGAACTTG
Found at i:45425143 original size:30 final size:30
Alignment explanation
Indices: 45425107--45425165 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
45425097 TTCAAAAATC
*
45425107 AAACTTTTACAAATTTACA-TTTTGACCCCT
1 AAACTTTCACAAATTTACACTTTTG-CCCCT
*
45425137 AAACTTTCACATATTTACACTTTTGCCCC
1 AAACTTTCACAAATTTACACTTTTGCCCC
45425166 AATGTTCGTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
30 21 0.81
31 5 0.19
ACGTcount: A:0.31, C:0.27, G:0.03, T:0.39
Consensus pattern (30 bp):
AAACTTTCACAAATTTACACTTTTGCCCCT
Found at i:45426628 original size:40 final size:40
Alignment explanation
Indices: 45426533--45426676 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
45426523 TTGAATTCTT
* *
45426533 GCACACTAAGTGCCAATACATAGCCAAAGCTAT-TTTAATCTC
1 GCACACTAAGTGCC-ATACATAGCCGAAGCTATCTTGAA--TC
*
45426575 GCACACTAAGTGCCATACATAGCCGAAGCTATCTCGAATC
1 GCACACTAAGTGCCATACATAGCCGAAGCTATCTTGAATC
* * *
45426615 GCACAGTAAGTGCCATACATAGCAGAAGCTATCTTGAATT
1 GCACACTAAGTGCCATACATAGCCGAAGCTATCTTGAATC
45426655 GCACACTAAGTGCCAT-CATAGC
1 GCACACTAAGTGCCATACATAGC
45426677 TGAATTGTTA
Statistics
Matches: 93, Mismatches: 8, Indels: 5
0.88 0.08 0.05
Matches are distributed among these distances:
39 6 0.06
40 53 0.57
41 17 0.18
42 17 0.18
ACGTcount: A:0.34, C:0.26, G:0.17, T:0.23
Consensus pattern (40 bp):
GCACACTAAGTGCCATACATAGCCGAAGCTATCTTGAATC
Found at i:45433677 original size:19 final size:19
Alignment explanation
Indices: 45433649--45433686 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
45433639 GGAAGTGTAC
* *
45433649 TATAACTCTGCTGTAAATA
1 TATAAATCTGCTGCAAATA
45433668 TATAAATCTGCTGCAAATA
1 TATAAATCTGCTGCAAATA
45433687 CTATTTAATG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.39, C:0.16, G:0.11, T:0.34
Consensus pattern (19 bp):
TATAAATCTGCTGCAAATA
Found at i:45438338 original size:27 final size:26
Alignment explanation
Indices: 45438300--45438462 Score: 166
Period size: 27 Copynumber: 6.0 Consensus size: 26
45438290 GTTAAGACCT
*
45438300 TAGTTTGTAAAATTATCGAAATACCCC
1 TAGTTTGTAAAATTA-CAAAATACCCC
*
45438327 TAGTTTGTAAAATTACCGAAATACCCC
1 TAGTTTGTAAAATTA-CAAAATACCCC
* *
45438354 CAATTTGTAAAATTACTAAAATACCCC
1 TAGTTTGTAAAATTAC-AAAATACCCC
45438381 TAGTTTGTAAAATTACTAAAATACCCC
1 TAGTTTGTAAAATTAC-AAAATACCCC
* * * * *
45438408 CAATTTGTAAAAGTACCGAAATACCCT
1 TAGTTTGTAAAATTA-CAAAATACCCC
*
45438435 TA-TAGTGTAAAATTATCAAAATACCCC
1 TAGT-TTGTAAAATTA-CAAAATACCCC
45438462 T
1 T
45438463 GTAGGGTAAA
Statistics
Matches: 116, Mismatches: 17, Indels: 6
0.83 0.12 0.04
Matches are distributed among these distances:
26 2 0.02
27 113 0.97
28 1 0.01
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (26 bp):
TAGTTTGTAAAATTACAAAATACCCC
Found at i:45438385 original size:54 final size:54
Alignment explanation
Indices: 45438303--45438461 Score: 214
Period size: 54 Copynumber: 2.9 Consensus size: 54
45438293 AAGACCTTAG
*
45438303 TTTGTAAAATTA-TCGAAATACCCCTAGTTTGTAAAATTACCGAAATACCCCCAA
1 TTTGTAAAATTACT-GAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCCAA
* *
45438357 TTTGTAAAATTACTAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCCCAA
1 TTTGTAAAATTACTGAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCCAA
* * * * *
45438411 TTTGTAAAAGTACCGAAATACCCTTA-TAGTGTAAAATTATCAAAATACCCC
1 TTTGTAAAATTACTGAAATACCCCTAGT-TTGTAAAATTACCAAAATACCCC
45438462 TGTAGGGTAA
Statistics
Matches: 93, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
53 1 0.01
54 91 0.98
55 1 0.01
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.30
Consensus pattern (54 bp):
TTTGTAAAATTACTGAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCCAA
Found at i:45438444 original size:81 final size:81
Alignment explanation
Indices: 45438300--45438462 Score: 215
Period size: 81 Copynumber: 2.0 Consensus size: 81
45438290 GTTAAGACCT
* * * * *
45438300 TAGTTTGTAAAATTATCGAAATACCCCTAGTTTGTAAAATTACCGAAATACCCCCAATTTGTAAA
1 TAGTTTGTAAAATTATCAAAATACCCCCAATTTGTAAAAGTACCGAAATACCCCCAATGTGTAAA
45438365 ATTA-CTAAAATACCCC
66 ATTATC-AAAATACCCC
**
45438381 TAGTTTGTAAAATTA-CTAAAATACCCCCAATTTGTAAAAGTACCGAAATA-CCCTTATAGTGTA
1 TAGTTTGTAAAATTATC-AAAATACCCCCAATTTGTAAAAGTACCGAAATACCCCCAAT-GTGTA
45438444 AAATTATCAAAATACCCC
64 AAATTATCAAAATACCCC
45438462 T
1 T
45438463 GTAGGGTAAA
Statistics
Matches: 72, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
80 6 0.08
81 65 0.90
82 1 0.01
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (81 bp):
TAGTTTGTAAAATTATCAAAATACCCCCAATTTGTAAAAGTACCGAAATACCCCCAATGTGTAAA
ATTATCAAAATACCCC
Found at i:45443574 original size:28 final size:28
Alignment explanation
Indices: 45443542--45443621 Score: 99
Period size: 29 Copynumber: 2.8 Consensus size: 28
45443532 CATACATGCT
*
45443542 TATGGCCCACTAGGCCCAATCTCAT-TCA
1 TATGGCCCACTAGGCCCAATCACATCT-A
* *
45443570 TATGGCCTATTAGGCCCAAATCACATCTA
1 TATGGCCCACTAGGCCC-AATCACATCTA
*
45443599 TATGGCCCACTAGACCCAATCAC
1 TATGGCCCACTAGGCCCAATCAC
45443622 TTTTACAGTC
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
28 21 0.48
29 22 0.50
30 1 0.02
ACGTcount: A:0.29, C:0.34, G:0.14, T:0.24
Consensus pattern (28 bp):
TATGGCCCACTAGGCCCAATCACATCTA
Found at i:45443602 original size:29 final size:28
Alignment explanation
Indices: 45443542--45443621 Score: 99
Period size: 28 Copynumber: 2.8 Consensus size: 28
45443532 CATACATGCT
*
45443542 TATGGCCCACTAGGCCCAATCTCATTCA
1 TATGGCCCACTAGGCCCAATCACATTCA
* *
45443570 TATGGCCTATTAGGCCCAAATCACA-TCTA
1 TATGGCCCACTAGGCCC-AATCACATTC-A
*
45443599 TATGGCCCACTAGACCCAATCAC
1 TATGGCCCACTAGGCCCAATCAC
45443622 TTTTACAGTC
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
28 23 0.52
29 21 0.48
ACGTcount: A:0.29, C:0.34, G:0.14, T:0.24
Consensus pattern (28 bp):
TATGGCCCACTAGGCCCAATCACATTCA
Found at i:45443862 original size:16 final size:16
Alignment explanation
Indices: 45443841--45443875 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
45443831 GTAGCCAAAC
45443841 TTTCAGCTTTTCGGCA
1 TTTCAGCTTTTCGGCA
45443857 TTTCAGCTTTTCGGCA
1 TTTCAGCTTTTCGGCA
45443873 TTT
1 TTT
45443876 GCCGATCTAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.11, C:0.23, G:0.17, T:0.49
Consensus pattern (16 bp):
TTTCAGCTTTTCGGCA
Found at i:45446862 original size:27 final size:27
Alignment explanation
Indices: 45446830--45446962 Score: 151
Period size: 27 Copynumber: 4.9 Consensus size: 27
45446820 TTAAGACCCT
45446830 AGTTTGTAAAATTACCGAAATACCCCC
1 AGTTTGTAAAATTACCGAAATACCCCC
*
45446857 AGTTTGTAAAATTA-CGAAAATACCCCT
1 AGTTTGTAAAATTACCG-AAATACCCCC
* * ***
45446884 GGTTTGTAAAATTACTGAAATACCTTT
1 AGTTTGTAAAATTACCGAAATACCCCC
* * *
45446911 GGCTTGTAAAATTACCGAAATGCCCCC
1 AGTTTGTAAAATTACCGAAATACCCCC
* *
45446938 AATTTGTAAAATTACCAAAATACCC
1 AGTTTGTAAAATTACCGAAATACCC
45446963 TTCTAGTGTA
Statistics
Matches: 88, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
26 2 0.02
27 85 0.97
28 1 0.01
ACGTcount: A:0.38, C:0.21, G:0.12, T:0.29
Consensus pattern (27 bp):
AGTTTGTAAAATTACCGAAATACCCCC
Found at i:45446918 original size:54 final size:53
Alignment explanation
Indices: 45446826--45446988 Score: 168
Period size: 54 Copynumber: 3.0 Consensus size: 53
45446816 GTCGTTAAGA
** *
45446826 CCCTAGTTTGTAAAATTACCGAAATACCCCCAGTTTGTAAAATTACGAAAATAC
1 CCCTAGTTTGTAAAATTACCGAAATA-CCCTTGCTTGTAAAATTACGAAAATAC
* * * *
45446880 CCCTGGTTTGTAAAATTACTGAAATACCTTTGGCTTGTAAAATTACCG-AAATGC
1 CCCTAGTTTGTAAAATTACCGAAATACCCTT-GCTTGTAAAATTA-CGAAAATAC
* * * *
45446934 CCCCAATTTGTAAAATTACCAAAATACCCTT-CTAGTGTAAAATTACTAAAATAC
1 CCCTAGTTTGTAAAATTACCGAAATACCCTTGCT--TGTAAAATTACGAAAATAC
45446988 C
1 C
45446989 TCTGTAAGCT
Statistics
Matches: 89, Mismatches: 15, Indels: 10
0.78 0.13 0.09
Matches are distributed among these distances:
52 2 0.02
53 3 0.03
54 82 0.92
55 2 0.02
ACGTcount: A:0.37, C:0.21, G:0.11, T:0.30
Consensus pattern (53 bp):
CCCTAGTTTGTAAAATTACCGAAATACCCTTGCTTGTAAAATTACGAAAATAC
Found at i:45446973 original size:81 final size:80
Alignment explanation
Indices: 45446833--45446989 Score: 235
Period size: 81 Copynumber: 1.9 Consensus size: 80
45446823 AGACCCTAGT
* * *
45446833 TTGTAAAATTACCGAAATACCCCCAGTTTGTAAAATTACGAAAATACCCCTGGTTTGTAAAATTA
1 TTGTAAAATTACCGAAATACCCCCAATTTGTAAAATTACCAAAATACCCCTAG-TTGTAAAATTA
*
45446898 CTGAAATACCTTTGGC
65 CTAAAATACCTTTGGC
*
45446914 TTGTAAAATTACCGAAATGCCCCCAATTTGTAAAATTACCAAAATACCCTTCTAG-TGTAAAATT
1 TTGTAAAATTACCGAAATACCCCCAATTTGTAAAATTACCAAAATACCC--CTAGTTGTAAAATT
45446978 ACTAAAATACCT
64 ACTAAAATACCT
45446990 CTGTAAGCTA
Statistics
Matches: 69, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
81 66 0.96
83 3 0.04
ACGTcount: A:0.38, C:0.20, G:0.11, T:0.31
Consensus pattern (80 bp):
TTGTAAAATTACCGAAATACCCCCAATTTGTAAAATTACCAAAATACCCCTAGTTGTAAAATTAC
TAAAATACCTTTGGC
Found at i:45449355 original size:21 final size:21
Alignment explanation
Indices: 45449330--45449376 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
45449320 AATTAGGGAT
*
45449330 TTAATTGTAAAATGTGTAAAA
1 TTAATGGTAAAATGTGTAAAA
* *
45449351 TTAATGGTGAAATGTGTGAAA
1 TTAATGGTAAAATGTGTAAAA
45449372 -TAATG
1 TTAATG
45449377 AAAATTTTGG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
20 5 0.22
21 18 0.78
ACGTcount: A:0.43, C:0.00, G:0.21, T:0.36
Consensus pattern (21 bp):
TTAATGGTAAAATGTGTAAAA
Found at i:45457510 original size:39 final size:40
Alignment explanation
Indices: 45457409--45457632 Score: 246
Period size: 39 Copynumber: 5.7 Consensus size: 40
45457399 TTGAATGATG
* * *
45457409 TCCGGGCTAAGTCCCAAAGGC-TTTGTGCTA-AGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
45457448 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
45457489 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
45457528 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* * * *
45457567 TCTGGGTTAAGTCCTGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
45457606 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
45457633 AACGAGTAGC
Statistics
Matches: 161, Mismatches: 16, Indels: 14
0.84 0.08 0.07
Matches are distributed among these distances:
39 74 0.46
40 74 0.46
41 12 0.07
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:45457596 original size:79 final size:79
Alignment explanation
Indices: 45457409--45457632 Score: 242
Period size: 79 Copynumber: 2.8 Consensus size: 79
45457399 TTGAATGATG
* * * * *
45457409 TCCGGGCTAAGTCCCAAAGGC-TTTGTGCTA-AGTGACCATATCCGGACTAAGAT-CCGAAGGCA
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGA-T-ACTATAACCGGGCTAAG-TCCCGAAGGCA
*
45457471 TTTGTGCGAGATACTAAT
62 TTTGTGCGAGATACTAAA
*
45457489 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTA-ATTCCGGGCTAAG-CCCGAAGGCATTT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTATA-ACCGGGCTAAGTCCCGAAGGCATTT
*
45457552 GTGCGAGTTACTAAA
65 GTGCGAGATACTAAA
* * * * *
45457567 TCTGGGTTAAGTCCTGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTATAACCGGGCTAAGTCCCGAAGGCATTT
45457632 G
65 G
45457633 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 12, Indels: 14
0.83 0.08 0.09
Matches are distributed among these distances:
78 35 0.28
79 54 0.43
80 35 0.28
81 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTATAACCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGATACTAAA
Found at i:45457639 original size:40 final size:39
Alignment explanation
Indices: 45457410--45457632 Score: 220
Period size: 40 Copynumber: 5.6 Consensus size: 39
45457400 TGAATGATGT
* * * *
45457410 CCGGGCTAAGTCCCAAAGGC-TTTGTGCTAAGTGAC-CATA
1 CCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAATA
* * * *
45457449 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAATT
1 -CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAATA
* *
45457490 CCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAATT
1 CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAATA
45457529 CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA-A
1 CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAATA
* * *
45457567 TCTGGGTTAAGTCCTGAAGGCATTTGTGCGAGTTACT-ATAA
1 -CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAT-A
*
45457608 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAG-CCCGAAGGCATTTG
45457633 AACGAGTAGC
Statistics
Matches: 157, Mismatches: 20, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
39 73 0.46
40 74 0.47
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAATA
Found at i:45457665 original size:79 final size:78
Alignment explanation
Indices: 45457462--45457665 Score: 200
Period size: 79 Copynumber: 2.6 Consensus size: 78
45457452 GGACTAAGAT
** * * * *
45457462 CCGAAGGCATTTGTGCGAGATACTAATTC-CGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTA
1 CCGAAGGCATTTGAACGAGTTACTAAATCTC-GGTTAAGTCCGAAGGCATTTGTGCGAGATACTA
*
45457526 ATTCCGGGCTAAGC
65 ATACCGGGCTAAGC
** * *
45457540 CCGAAGGCATTTGTGCGAGTTACTAAATCTGGGTTAAGTCCTGAAGGCATTTGTGCGAGTTACT-
1 CCGAAGGCATTTGAACGAGTTACTAAATCTCGGTTAAGTCC-GAAGGCATTTGTGCGAGATACTA
*
45457604 ATAACCGGGCTATGTC
65 AT-ACCGGGCTAAG-C
* *
45457620 CCGAAGGCATTTGAACGAG-TAGCTATATC-CGGTTAAATTCCGAAGG
1 CCGAAGGCATTTGAACGAGTTA-CTAAATCTCGGTT-AAGTCCGAAGG
45457666 TACGTGATTT
Statistics
Matches: 107, Mismatches: 13, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
78 37 0.35
79 41 0.38
80 29 0.27
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (78 bp):
CCGAAGGCATTTGAACGAGTTACTAAATCTCGGTTAAGTCCGAAGGCATTTGTGCGAGATACTAA
TACCGGGCTAAGC
Found at i:45460614 original size:39 final size:40
Alignment explanation
Indices: 45460569--45460793 Score: 233
Period size: 40 Copynumber: 5.7 Consensus size: 40
45460559 GCTCCTCGTT
* * * *
45460569 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
45460609 C-AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
45460648 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * *
45460688 CAAAGGCCTTCGGGGCTTAACCCGGAACTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
** * * * *
45460728 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
45460769 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
45460794 CAGCATTCAA
Statistics
Matches: 157, Mismatches: 22, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
39 38 0.24
40 105 0.67
41 14 0.09
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:45460802 original size:41 final size:41
Alignment explanation
Indices: 45460725--45460802 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
45460715 CTTGTATCTC
* * *
45460725 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
45460766 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
45460803 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:45665614 original size:40 final size:40
Alignment explanation
Indices: 45665460--45665642 Score: 184
Period size: 40 Copynumber: 4.7 Consensus size: 40
45665450 TCGAATGATG
* * *
45665460 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAG-TACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
45665499 TCC-GACTAAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCT-AAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
45665539 TCCGGGCTAAG-CCTC-AAGGCATTGGTGC-AGTTACTAAA
1 TCCGGGCTAAGTCC-CGAAGGCATTTGTGCGAGTTACTAAA
*
45665577 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
45665618 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
45665643 AACGAGAACG
Statistics
Matches: 120, Mismatches: 13, Indels: 21
0.78 0.08 0.14
Matches are distributed among these distances:
38 22 0.18
39 43 0.36
40 50 0.42
41 5 0.04
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:45673796 original size:40 final size:41
Alignment explanation
Indices: 45673598--45673782 Score: 213
Period size: 40 Copynumber: 4.6 Consensus size: 41
45673588 TCGAATGATG
* * * *
45673598 TCCGGGCTAAGTCCCAAAGGC-TTTGTGCTAAGTGACCAT-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
45673638 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-AT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATAA
*
45673678 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
45673717 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
45673758 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
45673783 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
39 34 0.27
40 80 0.65
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:45673804 original size:79 final size:79
Alignment explanation
Indices: 45673651--45673815 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
45673641 GGACTAAGAT
* **
45673651 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
45673716 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
45673730 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* * *
45673793 TATAT-CTGGTTAAATT
63 TAAATCCGGGTTAAATC
45673809 CCGAAGG
1 CCGAAGG
45673816 TACGTGATTC
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 49 0.67
80 22 0.30
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:45687813 original size:46 final size:46
Alignment explanation
Indices: 45687746--45687920 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
45687736 TGTAACCCGC
*
45687746 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
* *
45687792 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * * *
45687842 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
45687885 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG
45687921 ATGCTCAACC
Statistics
Matches: 108, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 61 0.56
47 27 0.25
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:45687866 original size:93 final size:93
Alignment explanation
Indices: 45687753--45687924 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
45687743 CGCCCATAAG
* * *
45687753 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
45687818 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
45687846 CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
45687911 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
45687925 TCAACCATCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:45695410 original size:93 final size:93
Alignment explanation
Indices: 45695302--45695473 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
45695292 CGCCCATAAG
* *
45695302 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
45695367 ATGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
45695395 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
45695460 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
45695474 TCAACCATCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:45695470 original size:46 final size:46
Alignment explanation
Indices: 45695295--45695470 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
45695285 TGTAACCCGC
* * *
45695295 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* * *
45695341 CCATAAGTGAACTCGGACTCAACTCAATGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
45695391 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
45695434 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
45695471 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 62 0.57
47 28 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:45704679 original size:41 final size:41
Alignment explanation
Indices: 45704618--45704768 Score: 173
Period size: 41 Copynumber: 3.7 Consensus size: 41
45704608 TCCAAGCTTT
*
45704618 GTTTCGAAGGGCCTTTGAGCCAGTGCTAATAACCGAACTTA
1 GTTTCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTA
** * *
45704659 GTTTCGAAGGGCTTAAGAGCCAGTG-TCATAACCGGACTTA
1 GTTTCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTA
* * *
45704699 GTTCCGAAGGGCTTTCGAGCCAGTGGTCTAAT--CCGAGCTTA
1 GTTTCGAAGGGCTTTTGAGCCAGT-G-CTAATAACCGAACTTA
* *
45704740 GTCTCGAAGGGCTTTTGAGCCAATGCTAA
1 GTTTCGAAGGGCTTTTGAGCCAGTGCTAA
45704769 GAATCGGGCT
Statistics
Matches: 92, Mismatches: 15, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
39 4 0.04
40 35 0.38
41 50 0.54
43 3 0.03
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (41 bp):
GTTTCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTA
Found at i:45704701 original size:40 final size:39
Alignment explanation
Indices: 45704618--45704753 Score: 141
Period size: 40 Copynumber: 3.4 Consensus size: 39
45704608 TCCAAGCTTT
* * *
45704618 GTTTCGAAGGGCCTTTGAGCCAGTGCTAATAACCGAACTTA
1 GTTTCGAAGGG-CTTAGAGCCAGTG-TCATAACCGGACTTA
45704659 GTTTCGAAGGGCTTAAGAGCCAGTGTCATAACCGGACTTA
1 GTTTCGAAGGGCTT-AGAGCCAGTGTCATAACCGGACTTA
* *
45704699 GTTCCGAAGGGCTTTCGAGCCAGTGGTC-TAATCC-GAGCTTA
1 GTTTCGAAGGGC-TTAGAGCCAGT-GTCATAA-CCGGA-CTTA
*
45704740 GTCTCGAAGGGCTT
1 GTTTCGAAGGGCTT
45704754 TTGAGCCAAT
Statistics
Matches: 83, Mismatches: 7, Indels: 11
0.82 0.07 0.11
Matches are distributed among these distances:
40 42 0.51
41 41 0.49
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
GTTTCGAAGGGCTTAGAGCCAGTGTCATAACCGGACTTA
Found at i:45713157 original size:41 final size:41
Alignment explanation
Indices: 45713090--45713168 Score: 131
Period size: 41 Copynumber: 1.9 Consensus size: 41
45713080 GGGTTTAAAT
* *
45713090 CCGAGCTTGGTTTCGAAGGGCCTTTGAGCCAGTGCTAATAA
1 CCGAACTTAGTTTCGAAGGGCCTTTGAGCCAGTGCTAATAA
*
45713131 CCGAACTTAGTTTCGAAGGGCTTTTGAGCCAGTGCTAA
1 CCGAACTTAGTTTCGAAGGGCCTTTGAGCCAGTGCTAA
45713169 GAATCGGGCT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.28
Consensus pattern (41 bp):
CCGAACTTAGTTTCGAAGGGCCTTTGAGCCAGTGCTAATAA
Found at i:45713189 original size:41 final size:41
Alignment explanation
Indices: 45713090--45713190 Score: 123
Period size: 41 Copynumber: 2.5 Consensus size: 41
45713080 GGGTTTAAAT
* *
45713090 CCGAGCTTGGTTTCGAAGGGCCTTTGAGCCAGTGCTAATAA
1 CCGAGCTTGATTTCGAAGGGCCTTTGAGCCAGTGCTAAGAA
* *
45713131 CCGAACTT-AGTTTCGAAGGGCTTTTGAGCCAGTGCTAAGAA
1 CCGAGCTTGA-TTTCGAAGGGCCTTTGAGCCAGTGCTAAGAA
* * *
45713172 TCGGGCTTGATTCCGAAGG
1 CCGAGCTTGATTTCGAAGG
45713191 ATGTTTGTGC
Statistics
Matches: 50, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
41 49 0.98
42 1 0.02
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.27
Consensus pattern (41 bp):
CCGAGCTTGATTTCGAAGGGCCTTTGAGCCAGTGCTAAGAA
Found at i:45717328 original size:11 final size:11
Alignment explanation
Indices: 45717312--45717337 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
45717302 ATTGCATGTA
45717312 TGATATTATTG
1 TGATATTATTG
45717323 TGATATTATTG
1 TGATATTATTG
45717334 TGAT
1 TGAT
45717338 GTGGGCTTCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.19, T:0.54
Consensus pattern (11 bp):
TGATATTATTG
Found at i:45721044 original size:46 final size:46
Alignment explanation
Indices: 45720991--45721166 Score: 180
Period size: 46 Copynumber: 3.8 Consensus size: 46
45720981 TATTTGGGCA
45720991 TCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
45721037 TCCAAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * * *
45721082 CATCCGAGCTCGTCGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
45721130 CCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
45721167 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.58
47 26 0.24
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (46 bp):
TCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:45721146 original size:93 final size:93
Alignment explanation
Indices: 45720987--45721158 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
45720977 GGGATATTTG
* * * *
45720987 GGCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCAAACTCGTTGAG
1 GGCATCCAAACTCGTCGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCAAACTCATTGAG
45721052 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* * * *
45721080 GGCATCCGAGCTCGTCGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAG
1 GGCATCCAAACTCGTCGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCAAACTCATTGAG
45721145 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
45721159 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.27
Consensus pattern (93 bp):
GGCATCCAAACTCGTCGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCAAACTCATTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:45724131 original size:15 final size:15
Alignment explanation
Indices: 45724092--45724171 Score: 67
Period size: 15 Copynumber: 5.4 Consensus size: 15
45724082 GTATCTTGGG
*
45724092 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
45724107 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
45724122 TTTCTTTATT-TCGGG
1 TTTCTTTATTCT-GGA
*
45724137 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
* *
45724152 TTTCTTTTTTC-GGT
1 TTTCTTTATTCTGGA
45724166 TTTCTT
1 TTTCTT
45724172 GTTATCTTTG
Statistics
Matches: 52, Mismatches: 9, Indels: 9
0.74 0.13 0.13
Matches are distributed among these distances:
14 10 0.19
15 39 0.75
16 3 0.06
ACGTcount: A:0.09, C:0.17, G:0.14, T:0.60
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:45726610 original size:46 final size:46
Alignment explanation
Indices: 45726557--45726732 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
45726547 TATTTGGGCA
45726557 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
45726603 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
45726648 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
45726696 CCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
45726733 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.04
45 3 0.03
46 64 0.57
47 28 0.25
48 3 0.03
50 5 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:45726712 original size:93 final size:93
Alignment explanation
Indices: 45726553--45726724 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
45726543 GGGATATTTG
* *
45726553 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCATTGAG
45726618 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* *
45726646 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAGCTCATTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCATTGAG
45726711 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
45726725 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCATTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:45732960 original size:6 final size:6
Alignment explanation
Indices: 45732951--45732975 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
45732941 TAAATAAAGG
45732951 AAAATA AAAATA AAAATA AAAATA A
1 AAAATA AAAATA AAAATA AAAATA A
45732976 TAAAAGGGAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
AAAATA
Found at i:45744650 original size:43 final size:43
Alignment explanation
Indices: 45744602--45744747 Score: 292
Period size: 43 Copynumber: 3.4 Consensus size: 43
45744592 TTGGTTTTCA
45744602 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
45744645 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
45744688 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
45744731 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
45744748 TTGAAATGCA
Statistics
Matches: 103, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 103 1.00
ACGTcount: A:0.23, C:0.15, G:0.36, T:0.27
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:45744764 original size:29 final size:29
Alignment explanation
Indices: 45744729--45744802 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
45744719 GTTGTGAGAT
* *
45744729 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
45744758 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
45744787 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
45744803 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:45745240 original size:40 final size:40
Alignment explanation
Indices: 45745192--45745548 Score: 480
Period size: 40 Copynumber: 8.9 Consensus size: 40
45745182 GAGTTACTAA
* *
45745192 ATCCGGGCTAAGTCCCAAAGAGCATTCATGCTAGCGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
*
45745232 ATCTGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
** *
45745272 ATCCGGGCTAAGTTTCGAAGAGCATTCATGCTAGTGATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
45745312 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* * *
45745352 ATCCGGGCTAAGTTCCAAAGAGCATTCATGCTAGTGATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* *
45745392 ATCCGGGCTAAGTCCCGAGGAGCATTCGTGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* * *
45745432 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* ** * * * * *
45745472 ATCCGTGCTAAACCCCAAAGAGCATTCGTGCTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* * * *
45745512 ATCCGGGCTAGGTCCCGAAGAGTAATCATGCTGGTGA
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
45745549 CGTGTATTCG
Statistics
Matches: 280, Mismatches: 37, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 280 1.00
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
Found at i:45745333 original size:120 final size:120
Alignment explanation
Indices: 45745113--45745548 Score: 502
Period size: 120 Copynumber: 3.6 Consensus size: 120
45745103 TCGAATGATG
* ** * *
45745113 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAG-GC
1 TCCGGGCTAAGTCCCAAAGAGCATTCATGCT-AGTGA-TATATCCGGGCTAAG-TCCCGAAGAGC
** * * * * *
45745174 ATTGGTGCGAGTTACTAAATCCGGGCTAAGTCCCAAAGAGCATTCATGCTAGCGATGTA
63 ATTCATGCTAGTGA-TATATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
* * * **
45745233 TCTGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTTTCGAAGAGCATT
1 TCCGGGCTAAGTCCCAAAGAGCATTCATGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATT
45745298 CATGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
66 CATGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
* *
45745353 TCCGGGCTAAGTTCCAAAGAGCATTCATGCTAGTGATATATCCGGGCTAAGTCCCGAGGAGCATT
1 TCCGGGCTAAGTCCCAAAGAGCATTCATGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATT
* * * * *
45745418 CGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
66 CATGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
* ** * * * * * *
45745473 TCCGTGCTAAACCCCAAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAGGTCCCGAAGAGTAAT
1 TCCGGGCTAAGTCCCAAAGAGCATTCATGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATT
*
45745538 CATGCTGGTGA
66 CATGCTAGTGA
45745549 CGTGTATTCG
Statistics
Matches: 273, Mismatches: 39, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
119 1 0.00
120 247 0.90
121 19 0.07
122 6 0.02
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCAAAGAGCATTCATGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATT
CATGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
Found at i:45750078 original size:43 final size:43
Alignment explanation
Indices: 45750030--45750175 Score: 292
Period size: 43 Copynumber: 3.4 Consensus size: 43
45750020 TTGGTTTTCA
45750030 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
45750073 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
45750116 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
45750159 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
45750176 TTGAAATGCA
Statistics
Matches: 103, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 103 1.00
ACGTcount: A:0.23, C:0.15, G:0.36, T:0.27
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:45750192 original size:29 final size:29
Alignment explanation
Indices: 45750157--45750230 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
45750147 GTTGTGAGAT
* *
45750157 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
* *
45750186 TGGCACTAAGTGTCCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
45750215 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
45750231 TGGTTGATTA
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
28 5 0.13
29 34 0.87
ACGTcount: A:0.26, C:0.18, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:45750669 original size:40 final size:40
Alignment explanation
Indices: 45750622--45750974 Score: 483
Period size: 40 Copynumber: 8.8 Consensus size: 40
45750612 TTACTAAATT
* *
45750622 CGGGCTAAGTCCCAAAGAGCATTCATGCTAGCGATGTATC
1 CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATC
*
45750662 CGAGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATC
1 CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATC
*
45750702 CGGGCTAAGT-CCGAAGAGCATTCATGCTAGTGATATATC
1 CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATC
45750741 CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATC
1 CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATC
* *
45750781 CGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATATATC
1 CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATC
* *
45750821 CGGGCTAAGTCCCGAGGAGCATTCGTGCTAGTGATGTATC
1 CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATC
* * * *
45750861 CGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATT
1 CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATC
* ** * * * * *
45750901 CGTGCTAAACCCCAAAGAGCATTCGTGCTGGTGTTATATC
1 CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATC
* * * *
45750941 CGGGCTAGGTCCCGAAGAGTAATCATGCTGGTGA
1 CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
45750975 CGTGTATTCG
Statistics
Matches: 279, Mismatches: 33, Indels: 2
0.89 0.11 0.01
Matches are distributed among these distances:
39 38 0.14
40 241 0.86
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATC
Found at i:45757588 original size:71 final size:70
Alignment explanation
Indices: 45757454--45757583 Score: 176
Period size: 71 Copynumber: 1.9 Consensus size: 70
45757444 AGCCAATTTA
* * *
45757454 TCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACACATGCGACCTAGCTACATT
1 TCTCGTAGCTCTCTTGTCTACATGGTGTACATCAC-TCGAATCACACATGCGACCTAGCTACATT
45757519 TATCTC
65 TATCTC
* *
45757525 TCTCGTAGCTCTCTTGTCTACATGG-GATACATC-C-CGTATCACACATGTGACCTAGCTAC
1 TCTCGTAGCTCTCTTGTCTACATGGTG-TACATCACTCGAATCACACATGCGACCTAGCTAC
45757584 TACATAGTAT
Statistics
Matches: 53, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
68 22 0.42
70 2 0.04
71 29 0.55
ACGTcount: A:0.21, C:0.30, G:0.16, T:0.33
Consensus pattern (70 bp):
TCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTCGAATCACACATGCGACCTAGCTACATTT
ATCTC
Found at i:45757602 original size:68 final size:70
Alignment explanation
Indices: 45757452--45757609 Score: 171
Period size: 68 Copynumber: 2.3 Consensus size: 70
45757442 CTAGCCAATT
* * *
45757452 TATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACACATGCGACCTAGCTACA
1 TATCTCGTAGCTCTCTTGTCTACATGGTGTACATCAC-TCGAATCACACATGCGACCTAGCTACA
**
45757517 TTTATC
65 CATATC
* * *
45757523 TCTCTCGTAGCTCTCTTGTCTACATGG-GATACATC-C-CGTATCACACATGTGACCTAGCTACT
1 TATCTCGTAGCTCTCTTGTCTACATGGTG-TACATCACTCGAATCACACATGCGACCTAGCTAC-
*
45757585 ACATA-G
64 ACATATC
*
45757591 TATCTCGTAGCTTTCTTGT
1 TATCTCGTAGCTCTCTTGT
45757610 ACACATGACG
Statistics
Matches: 74, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
68 39 0.53
69 3 0.04
70 2 0.03
71 30 0.41
ACGTcount: A:0.21, C:0.28, G:0.16, T:0.35
Consensus pattern (70 bp):
TATCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTCGAATCACACATGCGACCTAGCTACAC
ATATC
Found at i:45772548 original size:40 final size:40
Alignment explanation
Indices: 45772468--45772618 Score: 225
Period size: 40 Copynumber: 3.8 Consensus size: 40
45772458 GGATATAGCT
* * *
45772468 ACTCGCTCGAATGCCTTCGGG-CATAGCCCGG-TTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATT-TAGTA
* *
45772507 ACTCGCACCAATGCCTTCGGGACTTAGCCCGGATTTGGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
45772547 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
*
45772587 GCTCGCACAAATGCCTTCGGGACTTAGCCCGG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
45772619 TTATCATCCG
Statistics
Matches: 103, Mismatches: 7, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
39 19 0.18
40 82 0.80
41 2 0.02
ACGTcount: A:0.21, C:0.30, G:0.25, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
Found at i:45793622 original size:23 final size:23
Alignment explanation
Indices: 45793592--45793636 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
45793582 TTTAGAGAGT
45793592 GTTAGCCATATGCTTCACTTATA
1 GTTAGCCATATGCTTCACTTATA
45793615 GTTAGCCATATGCTTCACTTAT
1 GTTAGCCATATGCTTCACTTAT
45793637 GGGACATATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.24, C:0.22, G:0.13, T:0.40
Consensus pattern (23 bp):
GTTAGCCATATGCTTCACTTATA
Found at i:45796771 original size:27 final size:27
Alignment explanation
Indices: 45796740--45796800 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 27
45796730 CTGCCAGAAT
*
45796740 AGATAAT-GTGACAAAGTCACCAGATAC
1 AGATAATCGTGACAAAGCCACCAGAT-C
* *
45796767 AGATAATCGTGGCAGAGCCACCAGATC
1 AGATAATCGTGACAAAGCCACCAGATC
45796794 AGATAAT
1 AGATAAT
45796801 TATGGCGTAG
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
27 15 0.50
28 15 0.50
ACGTcount: A:0.41, C:0.20, G:0.21, T:0.18
Consensus pattern (27 bp):
AGATAATCGTGACAAAGCCACCAGATC
Found at i:45796806 original size:27 final size:28
Alignment explanation
Indices: 45796757--45796814 Score: 75
Period size: 27 Copynumber: 2.1 Consensus size: 28
45796747 GTGACAAAGT
*
45796757 CACCAGATACAGATAATCGTGGCAG-AGC
1 CACCAGATACAGATAATCATGGC-GTAGC
*
45796785 CACCAGAT-CAGATAATTATGGCGTAGC
1 CACCAGATACAGATAATCATGGCGTAGC
45796812 CAC
1 CAC
45796815 GAGGCACTTG
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
26 1 0.04
27 18 0.67
28 8 0.30
ACGTcount: A:0.34, C:0.26, G:0.22, T:0.17
Consensus pattern (28 bp):
CACCAGATACAGATAATCATGGCGTAGC
Found at i:45800801 original size:27 final size:26
Alignment explanation
Indices: 45800739--45800849 Score: 123
Period size: 27 Copynumber: 4.1 Consensus size: 26
45800729 ACTACACGCC
* *
45800739 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
*
45800765 CTAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
45800793 CCAGAACAGATATATGTGGTAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
** *
45800820 CCAGATTAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
45800847 CCA
1 CCA
45800850 AGACGCTTCC
Statistics
Matches: 72, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
26 5 0.07
27 51 0.71
28 16 0.22
ACGTcount: A:0.37, C:0.21, G:0.23, T:0.19
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:45800803 original size:54 final size:54
Alignment explanation
Indices: 45800739--45800849 Score: 143
Period size: 54 Copynumber: 2.1 Consensus size: 54
45800729 ACTACACGCC
* *
45800739 CCAGAACAGATA-ATGTGACAGAGTCACTAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCA
** * * *
45800793 CCAGAACAGATATATGTGGTAGAGCCACCAGATTAGATAATTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
45800847 CCA
1 CCA
45800850 AGACGCTTCC
Statistics
Matches: 49, Mismatches: 7, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
54 33 0.67
55 16 0.33
ACGTcount: A:0.37, C:0.21, G:0.23, T:0.19
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
Found at i:45804947 original size:27 final size:27
Alignment explanation
Indices: 45804917--45805094 Score: 180
Period size: 27 Copynumber: 6.6 Consensus size: 27
45804907 ATATTGAGCC
* * *
45804917 CGCACACTCAGTGCTATATATTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
* * * *
45804944 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAACT
45804971 CGCACACTTAGTGCTACATAGTCAGACT
1 CGCACACTTAGTGCTACATAGTCA-ACT
** * *
45804999 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
* **
45805026 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAACT
*
45805053 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAGTC-AACT
45805080 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
45805095 GTACAATTTA
Statistics
Matches: 126, Mismatches: 21, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
27 101 0.80
28 25 0.20
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:45805056 original size:82 final size:81
Alignment explanation
Indices: 45804938--45805093 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
45804928 TGCTATATAT
* * *
45804938 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTCAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTC-GAATCGCA
45805003 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
45805020 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTCGAATCGCA
45805084 CACTTAGTGC
65 CACTTAGTGC
45805094 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 19 0.29
82 47 0.71
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTCGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:45813075 original size:27 final size:27
Alignment explanation
Indices: 45813018--45813193 Score: 176
Period size: 27 Copynumber: 6.5 Consensus size: 27
45813008 ATATTGAGCC
* * * *
45813018 CGCACACTCAGTGCTATATA-TCAACT
1 CGCACACTTAGTGCCACATAGTCAAAT
* *
45813044 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCCACATAGTCAAAT
* *
45813071 CGCACACTTAGTGCTACATAGTCAGACT
1 CGCACACTTAGTGCCACATAGTCA-AAT
* * *
45813099 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCCACATAGTCAAAT
* **
45813126 CGCACACTTAGTG-CATCATATTCATTT
1 CGCACACTTAGTGCCA-CATAGTCAAAT
* *
45813153 CGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCCACATAGTCAAAT
45813180 CGCACACTTAGTGC
1 CGCACACTTAGTGC
45813194 TGTACAATTT
Statistics
Matches: 124, Mismatches: 22, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
26 17 0.14
27 83 0.67
28 24 0.19
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCCACATAGTCAAAT
Found at i:45813110 original size:55 final size:53
Alignment explanation
Indices: 45813018--45813194 Score: 212
Period size: 55 Copynumber: 3.3 Consensus size: 53
45813008 ATATTGAGCC
* * * *
45813018 CGCACACTCAGTGCTATATATCAACTCGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATATCAACTCGCACACTTAGTGCCACATAGTCAAAT
* * *
45813071 CGCACACTTAGTGCTACATAGTCAGACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATA-TCA-ACTCGCACACTTAGTGCCACATAGTCAAAT
** * *
45813126 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTA-CATA-TCAACTCGCACACTTAGTGCCACATAGTCAAAT
45813180 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
45813195 GTACAATTTA
Statistics
Matches: 105, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
53 18 0.17
54 41 0.39
55 46 0.44
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.27
Consensus pattern (53 bp):
CGCACACTTAGTGCTACATATCAACTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:45813137 original size:82 final size:81
Alignment explanation
Indices: 45813038--45813193 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
45813028 GTGCTATATA
* * *
45813038 TCAACTCGCACACTTAGTGCCA-CGTAATCAAATCGCACACTTAGTGCTACATAGTCAGACTCGC
1 TCAACTCGCACACTTAGTG-CATCATAATCAAATCGCACACTTAGTGCAACATAGTC-GAATCGC
45813102 ACACTTAGTGCCGCATGG
64 ACACTTAGTGCCGCATGG
* * **
45813120 TCAATTCGCACACTTAGTGCATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCAC
1 TCAACTCGCACACTTAGTGCATCATAATCAAATCGCACACTTAGTGCAACATAGTCGAATCGCAC
45813185 ACTTAGTGC
66 ACTTAGTGC
45813194 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 19 0.29
82 47 0.71
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCATCATAATCAAATCGCACACTTAGTGCAACATAGTCGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:45820529 original size:40 final size:40
Alignment explanation
Indices: 45820468--45820570 Score: 152
Period size: 40 Copynumber: 2.6 Consensus size: 40
45820458 CGAACCTATC
* * * *
45820468 TTTGTATCACACATTTAGTGCCTCAGATAGCCGAAGCCAT
1 TTTGAATCGCACACTTAGTGCCTCAGATAGCCGAAACCAT
*
45820508 TTTGAATCGCACACTTAGTGCCTCAGATAGCCGAAACTAT
1 TTTGAATCGCACACTTAGTGCCTCAGATAGCCGAAACCAT
*
45820548 TTTGAATCGTACACTTAGTGCCT
1 TTTGAATCGCACACTTAGTGCCT
45820571 AATACAATTG
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 57 1.00
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.31
Consensus pattern (40 bp):
TTTGAATCGCACACTTAGTGCCTCAGATAGCCGAAACCAT
Found at i:45822025 original size:49 final size:49
Alignment explanation
Indices: 45821953--45822178 Score: 265
Period size: 49 Copynumber: 4.6 Consensus size: 49
45821943 TCTAGTACGT
* *
45821953 ATAGTAGCCTGCACTTAGTACTACACATGCAACCAATTATCCGGTACAC
1 ATAGTAGCCTGCACTTAGTACTACACATGCAACCAACTATCTGGTACAC
* ** * *
45822002 ATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACAC
1 ATAGTAGCCTGCACTTAGTACTACACATGCAACC-AACTATCTGGTACAC
* * * * * *
45822052 GTAGTAGCCTGCACTTAGTACTACACACGTG-ATCGAAGTTATCAGGTACGC
1 ATAGTAGCCTGCACTTAGTACTACACA--TGCAACCAA-CTATCTGGTACAC
* *
45822103 ATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCTGGTACAC
1 ATAGTAGCCTGCACTTAGTACTACACATGCAACCAACTATCTGGTACAC
*
45822152 GTAGTAGCCTGCACTTAGTACTACACA
1 ATAGTAGCCTGCACTTAGTACTACACA
45822179 CGTGACCTCA
Statistics
Matches: 146, Mismatches: 26, Indels: 10
0.80 0.14 0.05
Matches are distributed among these distances:
49 68 0.47
50 42 0.29
51 35 0.24
52 1 0.01
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.24
Consensus pattern (49 bp):
ATAGTAGCCTGCACTTAGTACTACACATGCAACCAACTATCTGGTACAC
Found at i:45822179 original size:100 final size:100
Alignment explanation
Indices: 45821954--45822183 Score: 349
Period size: 100 Copynumber: 2.3 Consensus size: 100
45821944 CTAGTACGTA
*
45821954 TAGTAGCCTGCACTTAGTACTACACA--TGCAACCAATTATCCGGTACACATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGTG-AACCAATTATCAGGTACACATAGTAGCCTGCACT
* *
45822017 TAGTACTACACACGTGACCTAACCATCTGATACACG
65 TAGTACTACACACGCGACCTAACAATCTGATACACG
* * *
45822053 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCAGGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGTGAACCAA-TTATCAGGTACACATAGTAGCCTGCACT
* *
45822118 TAGTACTACACATGCGACC-AACAATCTGGTACACG
65 TAGTACTACACACGCGACCTAACAATCTGATACACG
45822153 TAGTAGCCTGCACTTAGTACTACACACGTGA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA
45822184 CCTCACAATA
Statistics
Matches: 120, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
99 26 0.22
100 49 0.41
101 45 0.38
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.24
Consensus pattern (100 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGAACCAATTATCAGGTACACATAGTAGCCTGCACTT
AGTACTACACACGCGACCTAACAATCTGATACACG
Found at i:45822868 original size:30 final size:30
Alignment explanation
Indices: 45822833--45822892 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
45822823 CTTTAATACG
45822833 AACTTTGGCAAAATTATCA-TTTTGCCCCTA
1 AACTTTGGCAAAATTA-CACTTTTGCCCCTA
* *
45822863 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
45822893 GGCTCGAGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
29 2 0.07
30 25 0.93
ACGTcount: A:0.28, C:0.25, G:0.08, T:0.38
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:45828769 original size:22 final size:20
Alignment explanation
Indices: 45828729--45828769 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 20
45828719 AGTCCTATTA
*
45828729 ACTAAATTCACATGCAATTG
1 ACTAAATTCACATGAAATTG
45828749 ACTAAATTCAAACATGAAATT
1 ACTAAATTC--ACATGAAATT
45828770 TTCACACATG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 9 0.50
22 9 0.50
ACGTcount: A:0.46, C:0.17, G:0.07, T:0.29
Consensus pattern (20 bp):
ACTAAATTCACATGAAATTG
Found at i:45831310 original size:32 final size:32
Alignment explanation
Indices: 45831249--45831321 Score: 96
Period size: 32 Copynumber: 2.3 Consensus size: 32
45831239 TTAAAATTAT
*
45831249 AATAATA-AAGATAAATATAAACAACATAATA
1 AATAATATATGATAAATATAAACAACATAATA
*
45831280 AATAATATATGATAAAATATAAATAA-ATAATA
1 AATAATATATGAT-AAATATAAACAACATAATA
*
45831312 GATAATATAT
1 AATAATATAT
45831322 ATGTTAGACA
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
31 7 0.19
32 19 0.51
33 11 0.30
ACGTcount: A:0.64, C:0.03, G:0.04, T:0.29
Consensus pattern (32 bp):
AATAATATATGATAAATATAAACAACATAATA
Found at i:45833087 original size:79 final size:80
Alignment explanation
Indices: 45832897--45833100 Score: 241
Period size: 80 Copynumber: 2.6 Consensus size: 80
45832887 AGTCTTGAGT
* ** * * **
45832897 TCTTCGATCTGCTCCCCGTTGAATACAGAGACGCCCAAATCATCTTGAATCAACCTTGATGAAGG
1 TCTTCGATTTGCTCCCCGTCAAATACAGAGATGCCCAAATCATCTTGAATCAACCTCGACAAAGG
45832962 TCAGATCTACTAATG
66 TCAGATCTACTAATG
* * * * ** **
45832977 TCTTCGATTTGCTCTCCGTCCATTATAGAGATGCCCAAATCATCTTGGTTCTGCCTCGACAAAGG
1 TCTTCGATTTGCTCCCCGTCAAATACAGAGATGCCCAAATCATCTTGAATCAACCTCGACAAAGG
* *
45833042 TTAGATCTGCT-ATG
66 TCAGATCTACTAATG
45833056 TCTTCGATTTGCTCCCCGTCAAATACAGAGATG-CCAAATCATCTT
1 TCTTCGATTTGCTCCCCGTCAAATACAGAGATGCCCAAATCATCTT
45833101 CTTGGTTTTG
Statistics
Matches: 104, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
78 12 0.12
79 32 0.31
80 60 0.58
ACGTcount: A:0.25, C:0.26, G:0.17, T:0.31
Consensus pattern (80 bp):
TCTTCGATTTGCTCCCCGTCAAATACAGAGATGCCCAAATCATCTTGAATCAACCTCGACAAAGG
TCAGATCTACTAATG
Found at i:45833315 original size:132 final size:132
Alignment explanation
Indices: 45833121--45833375 Score: 397
Period size: 132 Copynumber: 1.9 Consensus size: 132
45833111 GTCCCTGTCA
* * *
45833121 AATATAGAGATGCCAAATCTGTCATCTTTGATCTGCTCTCTGACAATACAGAGATGCCAAATCTG
1 AATACAGAGATGCCAAATCTGTCATCTTCGATCTGCTCTCTGACAATACAGAGATGCAAAATCTG
* * *
45833186 CTATCTTCGATCTC-CTCTCTAACAATACAGAGATGCCAAATCTGTTATCTTCGATCTGTTCTTT
66 CTATCTTCGAT-TCACTCTCTAACAAAACAAAGATGCCAAATCTGCTATCTTCGATCTGTTCTTT
45833250 GAC
130 GAC
* *
45833253 AATACAGAGATGCCAGATCT-TCTATCTTCGATCTTCTCTCTGACAATACAGAGATGCAAAATCT
1 AATACAGAGATGCCAAATCTGTC-ATCTTCGATCTGCTCTCTGACAATACAGAGATGCAAAATCT
*
45833317 GCTATCTTCGATTCACTCTCTGACAAAACAAAGATGCCAAATCTGCTATCTTCGATCTG
65 GCTATCTTCGATTCACTCTCTAACAAAACAAAGATGCCAAATCTGCTATCTTCGATCTG
45833376 CTCCTTGTAA
Statistics
Matches: 112, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
131 4 0.04
132 108 0.96
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.32
Consensus pattern (132 bp):
AATACAGAGATGCCAAATCTGTCATCTTCGATCTGCTCTCTGACAATACAGAGATGCAAAATCTG
CTATCTTCGATTCACTCTCTAACAAAACAAAGATGCCAAATCTGCTATCTTCGATCTGTTCTTTG
AC
Found at i:45833361 original size:44 final size:44
Alignment explanation
Indices: 45833077--45833378 Score: 360
Period size: 44 Copynumber: 6.9 Consensus size: 44
45833067 CTCCCCGTCA
* * * * * *
45833077 AATACAGAGATGCCAAATCAT-CT-TCTTGGTTTTGGTCCCTGTC
1 AATACAGAGATGCCAAATC-TGCTATCTTCGATCTGCTCTCTGAC
* *
45833120 AAATATAGAGATGCCAAATCTG-TCATCTTTGATCTGCTCTCTGAC
1 -AATACAGAGATGCCAAATCTGCT-ATCTTCGATCTGCTCTCTGAC
* *
45833165 AATACAGAGATGCCAAATCTGCTATCTTCGATCTCCTCTCTAAC
1 AATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGAC
* * *
45833209 AATACAGAGATGCCAAATCTGTTATCTTCGATCTGTTCTTTGAC
1 AATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGAC
* * *
45833253 AATACAGAGATGCCAGATCTTCTATCTTCGATCTTCTCTCTGAC
1 AATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGAC
* *
45833297 AATACAGAGATGCAAAATCTGCTATCTTCGAT-TCACTCTCTGAC
1 AATACAGAGATGCCAAATCTGCTATCTTCGATCT-GCTCTCTGAC
* *
45833341 AAAACAAAGATGCCAAATCTGCTATCTTCGATCTGCTC
1 AATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTC
45833379 CTTGTAAACG
Statistics
Matches: 222, Mismatches: 30, Indels: 12
0.84 0.11 0.05
Matches are distributed among these distances:
43 3 0.01
44 203 0.91
45 16 0.07
ACGTcount: A:0.28, C:0.25, G:0.15, T:0.32
Consensus pattern (44 bp):
AATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGAC
Found at i:45845208 original size:22 final size:21
Alignment explanation
Indices: 45845170--45845221 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 21
45845160 CTAAAAACAC
45845170 TAAATAAAAAACATATGAAAA
1 TAAATAAAAAACATATGAAAA
** *
45845191 TAAATCAAAAAATTTATGAACA
1 TAAAT-AAAAAACATATGAAAA
*
45845213 TATATAAAA
1 TAAATAAAA
45845222 TAAGTCAAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
21 9 0.35
22 17 0.65
ACGTcount: A:0.65, C:0.06, G:0.04, T:0.25
Consensus pattern (21 bp):
TAAATAAAAAACATATGAAAA
Found at i:45845537 original size:32 final size:32
Alignment explanation
Indices: 45845476--45845548 Score: 87
Period size: 32 Copynumber: 2.3 Consensus size: 32
45845466 TTAAAATTAT
*
45845476 AATAATA-AAGATAAAGATAAACAACATAATA
1 AATAATATATGATAAAGATAAACAACATAATA
* *
45845507 AATAATATATGATAAAATATAAATAA-ATAATA
1 AATAATATATGAT-AAAGATAAACAACATAATA
*
45845539 GATAATATAT
1 AATAATATAT
45845549 ATGTTAGACA
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
31 7 0.19
32 19 0.53
33 10 0.28
ACGTcount: A:0.64, C:0.03, G:0.05, T:0.27
Consensus pattern (32 bp):
AATAATATATGATAAAGATAAACAACATAATA
Found at i:45846985 original size:17 final size:17
Alignment explanation
Indices: 45846963--45846995 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
45846953 TAAATGGACT
*
45846963 GTTTAATTTTATTTTTC
1 GTTTAATTTCATTTTTC
45846980 GTTTAATTTCATTTTT
1 GTTTAATTTCATTTTT
45846996 TAATTTTTGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.18, C:0.06, G:0.06, T:0.70
Consensus pattern (17 bp):
GTTTAATTTCATTTTTC
Found at i:45854611 original size:39 final size:39
Alignment explanation
Indices: 45854554--45854677 Score: 167
Period size: 39 Copynumber: 3.2 Consensus size: 39
45854544 GGACTTTAGC
* * * *
45854554 CCGGACATATTTCTAGCACGTAGCCTGCGGACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCTTAAGT
*
45854593 CCGGTTATAATTCCAGCACATAGCCTGCGGACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCTTAAGT
* * *
45854632 CTGGATATAATTCCAACACATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCTTAAGT
*
45854671 CCAGATA
1 CCGGATA
45854678 AACATCACTG
Statistics
Matches: 74, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 74 1.00
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.24
Consensus pattern (39 bp):
CCGGATATAATTCCAGCACATAGCCTGCGGACCTTAAGT
Found at i:45861731 original size:40 final size:40
Alignment explanation
Indices: 45861667--45861916 Score: 319
Period size: 40 Copynumber: 6.3 Consensus size: 40
45861657 TCTTCGGAAT
* * *
45861667 TTAG-CCGGATATAACCACAAGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTC
* *
45861706 TTAGCCCGGAT-ATATCAACTCGCACAAATGCCTTC-GGTC
1 TTAGCCCGGATAAAATC-ACTAGCACAAATGCCTTCGGGTC
*
45861745 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTC
* *
45861785 TTAACCCGGATAAAATCACTAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTC
* * * * *
45861825 TTAACCCGGGT-ATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATAAAATC-ACTAGCACAAATGCCTTCGGGTC
* *
45861865 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGAC
1 TTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTC
45861905 TTAGCCCGGATA
1 TTAGCCCGGATA
45861917 TCATTCAAAT
Statistics
Matches: 184, Mismatches: 21, Indels: 11
0.85 0.10 0.05
Matches are distributed among these distances:
39 40 0.22
40 141 0.77
41 3 0.02
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (40 bp):
TTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTC
Found at i:45868620 original size:40 final size:40
Alignment explanation
Indices: 45868525--45868670 Score: 256
Period size: 40 Copynumber: 3.6 Consensus size: 40
45868515 CGGATGATAA
* *
45868525 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
45868566 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
45868606 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
45868646 CCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
45868671 AGCAGTAGTT
Statistics
Matches: 102, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
40 65 0.64
41 37 0.36
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:45876529 original size:40 final size:40
Alignment explanation
Indices: 45876474--45876616 Score: 250
Period size: 40 Copynumber: 3.6 Consensus size: 40
45876464 CAGATGATAA
* *
45876474 CCGGGATAAGTCCCGAAGGCATTTGTGCGAGTCACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
45876514 CCGGGCTAAGTCCCGAAGGCATTTGTCCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
45876554 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
45876594 CCGGGCTAAGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATT
45876617 GGAGCAAGTA
Statistics
Matches: 98, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 98 1.00
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:45876917 original size:22 final size:21
Alignment explanation
Indices: 45876876--45876919 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
45876866 GAATGTGCAT
45876876 ATATGAAGTTATCCATTTAGCC
1 ATATGAAGTTATCCA-TTAGCC
45876898 ATATGAATGTTATACC-TTAGCC
1 ATATGAA-GTTAT-CCATTAGCC
45876920 GAAACTAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 13 0.65
23 5 0.25
24 2 0.10
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (21 bp):
ATATGAAGTTATCCATTAGCC
Found at i:45878089 original size:19 final size:20
Alignment explanation
Indices: 45878052--45878089 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
45878042 ATAAGGTGGT
45878052 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
45878072 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
45878090 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:45885711 original size:19 final size:19
Alignment explanation
Indices: 45885687--45885725 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
45885677 TGTCGTTGTG
45885687 TTTATTGATGACATTTTGA
1 TTTATTGATGACATTTTGA
45885706 TTTATTGATGACATTTTGA
1 TTTATTGATGACATTTTGA
45885725 T
1 T
45885726 CTACTCTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.26, C:0.05, G:0.15, T:0.54
Consensus pattern (19 bp):
TTTATTGATGACATTTTGA
Found at i:45895284 original size:30 final size:30
Alignment explanation
Indices: 45895250--45895307 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
45895240 TCCTTAACTC
45895250 AAACTTTGGCAAAATTACAATTTTGCCCAT
1 AAACTTTGGCAAAATTACAATTTTGCCCAT
* * * *
45895280 AAACTTTTGCATATTTACACTTTTGCCC
1 AAACTTTGGCAAAATTACAATTTTGCCC
45895308 CTAGGCTCGG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.31, C:0.22, G:0.09, T:0.38
Consensus pattern (30 bp):
AAACTTTGGCAAAATTACAATTTTGCCCAT
Found at i:45899599 original size:30 final size:30
Alignment explanation
Indices: 45899565--45899625 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
45899555 TCCTTAACTC
45899565 AAACTTTGGCAAAATTAAAATTTTGCCCCT
1 AAACTTTGGCAAAATTAAAATTTTGCCCCT
* * * * *
45899595 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGCAAAATTAAAATTTTGCCCCT
45899625 A
1 A
45899626 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGCAAAATTAAAATTTTGCCCCT
Found at i:45903339 original size:40 final size:40
Alignment explanation
Indices: 45903288--45903381 Score: 161
Period size: 40 Copynumber: 2.4 Consensus size: 40
45903278 CTCGGTATCA
* *
45903288 CACACTCAGTGCCTCAGATAGCCGAAGCTATTTTGAATCG
1 CACACTTAGTGCCTCACATAGCCGAAGCTATTTTGAATCG
45903328 CACACTTAGTGCCTCACATAGCCGAAGCTATTTTGAATCG
1 CACACTTAGTGCCTCACATAGCCGAAGCTATTTTGAATCG
*
45903368 CATACTTAGTGCCT
1 CACACTTAGTGCCT
45903382 AATACCATTG
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 51 1.00
ACGTcount: A:0.27, C:0.28, G:0.18, T:0.28
Consensus pattern (40 bp):
CACACTTAGTGCCTCACATAGCCGAAGCTATTTTGAATCG
Found at i:45914976 original size:27 final size:26
Alignment explanation
Indices: 45914937--45914990 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 26
45914927 GCAGCTAATT
* **
45914937 AATTTGTTCTAAATTAGACACATTAA
1 AATTTGTCCTAAACCAGACACATTAA
*
45914963 AATTATGTCCTAAACCAGACATATTAA
1 AATT-TGTCCTAAACCAGACACATTAA
45914990 A
1 A
45914991 CACCTACATT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
26 4 0.17
27 19 0.83
ACGTcount: A:0.44, C:0.15, G:0.07, T:0.33
Consensus pattern (26 bp):
AATTTGTCCTAAACCAGACACATTAA
Found at i:45918156 original size:36 final size:33
Alignment explanation
Indices: 45918095--45918170 Score: 91
Period size: 36 Copynumber: 2.2 Consensus size: 33
45918085 TTTTTAATCA
* *
45918095 CTTTTCTTCTTTTTTCCACTTTTTTTCTTTT-T
1 CTTTTCTTCTTTTCTCCACTCTTTTTCTTTTGT
45918127 CCTTTTCATTCTCTTTCTCTCACTCTTTTTCTTTTGT
1 -CTTTTC-TTCT-TTTCTC-CACTCTTTTTCTTTTGT
45918164 CTTTTCT
1 CTTTTCT
45918171 ATTGATTGTT
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
33 6 0.16
34 4 0.11
35 6 0.16
36 20 0.54
37 1 0.03
ACGTcount: A:0.04, C:0.26, G:0.01, T:0.68
Consensus pattern (33 bp):
CTTTTCTTCTTTTCTCCACTCTTTTTCTTTTGT
Found at i:45921474 original size:40 final size:40
Alignment explanation
Indices: 45921396--45921619 Score: 303
Period size: 40 Copynumber: 5.5 Consensus size: 40
45921386 ACCCAAGTAT
* *
45921396 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* **
45921435 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
45921475 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
45921515 CTTCGGGACTTAGCCC-GAGTATAG-CAACTACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGA-TATAGTC-ACTA---GCACAAATGC
* *
45921558 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
45921598 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
45921620 CATCTGAATA
Statistics
Matches: 166, Mismatches: 10, Indels: 17
0.86 0.05 0.09
Matches are distributed among these distances:
39 14 0.08
40 115 0.69
41 1 0.01
43 34 0.20
44 2 0.01
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:45921592 original size:83 final size:80
Alignment explanation
Indices: 45921396--45921619 Score: 310
Period size: 83 Copynumber: 2.8 Consensus size: 80
45921386 ACCCAAGTAT
* * * *
45921396 CTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
**
45921460 CACTAGCATGAATGC
66 CACTAGCACAAATGC
*
45921475 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCC-GAGTATAG
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGA-TATAG
45921539 -CAACTACTCGCACAAATGC
65 TC-ACTA---GCACAAATGC
*
45921558 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
45921620 CATCTGAATA
Statistics
Matches: 129, Mismatches: 9, Indels: 10
0.87 0.06 0.07
Matches are distributed among these distances:
79 15 0.12
80 47 0.36
83 65 0.50
84 2 0.02
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:45925801 original size:6 final size:6
Alignment explanation
Indices: 45925790--45925816 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
45925780 ATATTTTGAA
45925790 AAAAAG AAAAAG AAAAAG AAAAAG AAA
1 AAAAAG AAAAAG AAAAAG AAAAAG AAA
45925817 GAAAAGAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:45932440 original size:78 final size:78
Alignment explanation
Indices: 45932287--45932451 Score: 224
Period size: 78 Copynumber: 2.1 Consensus size: 78
45932277 ATAATTGAGA
* * *
45932287 ATTATATCCGGGCTAAGTCCTGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGG
1 ATTATATCCGAGCTAAGCCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGG
*
45932352 CATTCGTGCTGGT
66 CATTCGTGCTGGC
* * * *
45932365 GTTATATCCGAGTTAAGCCCCGAAGGCATTCGTGCTGGTGTTATATCTGGGCTAAAGTCCCGCAG
1 ATTATATCCGAGCTAAGCCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCT-AAGTCCCGAAG
**
45932430 GC-TTTTTGCTGGC
65 GCATTCGTGCTGGC
45932443 ATTATATCC
1 ATTATATCC
45932452 TGGCTTAAAA
Statistics
Matches: 75, Mismatches: 11, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
78 63 0.84
79 12 0.16
ACGTcount: A:0.19, C:0.22, G:0.27, T:0.31
Consensus pattern (78 bp):
ATTATATCCGAGCTAAGCCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGG
CATTCGTGCTGGC
Found at i:45932441 original size:39 final size:39
Alignment explanation
Indices: 45932288--45932431 Score: 225
Period size: 39 Copynumber: 3.7 Consensus size: 39
45932278 TAATTGAGAA
*
45932288 TTATATCCGGGCTAAGTCCTGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
45932327 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * *
45932366 TTATATCCGAGTTAAGCCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
45932405 TTATATCTGGGCTAAAGTCCCGCAGGC
1 TTATATCCGGGCT-AAGTCCCGAAGGC
45932432 TTTTTGCTGG
Statistics
Matches: 95, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 84 0.88
40 11 0.12
ACGTcount: A:0.19, C:0.23, G:0.29, T:0.28
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Found at i:45939509 original size:25 final size:25
Alignment explanation
Indices: 45939480--45939559 Score: 97
Period size: 25 Copynumber: 3.2 Consensus size: 25
45939470 TGACCCACAA
45939480 CTCGTGAGAGCATACCGATTTACAG
1 CTCGTGAGAGCATACCGATTTACAG
* *
45939505 CTCGTGAGAGCATACCAAGTTACAG
1 CTCGTGAGAGCATACCGATTTACAG
* * * * *
45939530 CTCGAGTGAGCATATCGATTCAGAG
1 CTCGTGAGAGCATACCGATTTACAG
45939555 CTCGT
1 CTCGT
45939560 ATGAGAATAC
Statistics
Matches: 45, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 45 1.00
ACGTcount: A:0.28, C:0.24, G:0.25, T:0.24
Consensus pattern (25 bp):
CTCGTGAGAGCATACCGATTTACAG
Found at i:45953491 original size:27 final size:27
Alignment explanation
Indices: 45953454--45953658 Score: 227
Period size: 27 Copynumber: 7.6 Consensus size: 27
45953444 TAAATTGTAC
45953454 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
45953481 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
45953508 TGCACTAAGTGGTGCGAAATGA-AATG-
1 AGCACTAAGT-GTGCGATTTGACTATGT
* *
45953534 ATGCACTAAGTGTGCGAATTGACCATGT
1 A-GCACTAAGTGTGCGATTTGACTATGT
* *
45953562 GGCACTAAGTGTGCGAGATTTGATTATGT
1 AGCACTAAGTGTGC--GATTTGACTATGT
* *
45953591 AGCACTAAGTGTGCGA-TTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
45953617 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
45953644 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
45953659 GACTCAATAT
Statistics
Matches: 155, Mismatches: 16, Indels: 14
0.84 0.09 0.08
Matches are distributed among these distances:
26 35 0.23
27 88 0.57
28 9 0.06
29 23 0.15
ACGTcount: A:0.27, C:0.14, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:45957445 original size:30 final size:30
Alignment explanation
Indices: 45957411--45957471 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
45957401 TCCTTAACTC
45957411 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
45957441 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
45957471 A
1 A
45957472 GGCTTGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:45959508 original size:40 final size:40
Alignment explanation
Indices: 45959424--45959645 Score: 315
Period size: 40 Copynumber: 5.6 Consensus size: 40
45959414 AACCCAAGTA
* *
45959424 CCTTCGGGAATTAG-CCAGATATAG-CAACTCA-CACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACT-AGCACAAATG
* * *
45959463 CCTTCGGGTCTTAGCCCGGATACAGTCACTGGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
45959503 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCATAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* *
45959543 CCTTTGGGACTTAGCCCGGATATAGTCACTAGCACAAAGG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
45959583 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCATAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
45959623 CCTTCGGGACTTAGCCCGAATAT
1 CCTTCGGGACTTAGCCCGGATAT
45959646 CATCCGAATA
Statistics
Matches: 164, Mismatches: 16, Indels: 5
0.89 0.09 0.03
Matches are distributed among these distances:
39 12 0.07
40 151 0.92
41 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:45964407 original size:43 final size:43
Alignment explanation
Indices: 45964323--45964452 Score: 113
Period size: 43 Copynumber: 3.0 Consensus size: 43
45964313 ATATCGTACA
* * * * *
45964323 ATGCCAATGTCACAGACATGGTCTTACATGTAGC-CACATATCG
1 ATGCCACTGTCCCAGACATGGTCTTACTTGCA-CACATATATCG
*
45964366 ATGCCACTGTCCCAGACAGGGTCTTACTTGCACACATATATCAG
1 ATGCCACTGTCCCAGACATGGTCTTACTTGCACACATATATC-G
* * * *
45964410 A-GTCACATAT-CGATGCCATGGTCTTACTTGCACACATATATCG
1 ATGCCAC-TGTCCCA-GACATGGTCTTACTTGCACACATATATCG
45964453 GAATCCTATG
Statistics
Matches: 72, Mismatches: 11, Indels: 8
0.79 0.12 0.09
Matches are distributed among these distances:
42 1 0.01
43 41 0.57
44 30 0.42
ACGTcount: A:0.28, C:0.27, G:0.18, T:0.27
Consensus pattern (43 bp):
ATGCCACTGTCCCAGACATGGTCTTACTTGCACACATATATCG
Found at i:45975954 original size:93 final size:93
Alignment explanation
Indices: 45975846--45976016 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
45975836 GCCCCTAAGT
* *
45975846 GAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGAATCAACTCA
1 GAACTCAGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGAATCAACTCA
45975910 ACGAGTTCGGATGCCTAGTTACATCTCAC
65 ACGAGTTCGGATGCCTAGTTACATCTCAC
* * *
45975939 GAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCATAGGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGAATCAACTCAA
45976004 CGAGTTCGGATGC
66 CGAGTTCGGATGC
45976017 TCAACCATCC
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 2 0.03
93 70 0.97
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGAATCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Done.