Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 140 of 362
Found at i:46640704 original size:46 final size:46
Alignment explanation
Indices: 46640534--46640704 Score: 172
Period size: 46 Copynumber: 3.7 Consensus size: 46
46640524 AAACCGCCCT
* * * *
46640534 TAAGTGAACTCCGACTCAACTCAACGAGCTC-AGGCGTTCACATCC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGAGACATTCACATCC
*
46640579 ATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C
1 -TAAGTGAACTCGGACTCAACTCAACGAGTTC-GA-GAC-A-TTCACATCC
* ** *
46640628 TCA-CAAACTCGGACTCAACTCAACGAGTTCGA-ACATTCGCATCC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGAGACATTCACATCC
46640672 GTAAGTGAACTCGGACTCAACTCAACGAGTTCG
1 -TAAGTGAACTCGGACTCAACTCAACGAGTTCG
46640705 GATGCTCAAC
Statistics
Matches: 104, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 57 0.55
47 25 0.24
48 3 0.03
49 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGAGACATTCACATCC
Found at i:46642581 original size:27 final size:26
Alignment explanation
Indices: 46642551--46642724 Score: 161
Period size: 27 Copynumber: 6.4 Consensus size: 26
46642541 AAATTGTACA
*
46642551 GCACTAAGTGTGCGATTCGACTATGTT
1 GCACTAAGTGTGCGATT-GACTATGTG
* *
46642578 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCG-ATTGACTATG-TG
* *
46642605 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCG-ATTGACTATGTG
*
46642632 GCACTAAGTGTGCGAGTCTGACTATGTA
1 GCACTAAGTGTGCGA-T-TGACTATGTG
* *
46642660 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGA-TTGACTATGTG
* * *
46642687 GCACTAAGTGTGCGAGTTGAATATATA
1 GCACTAAGTGTGCGA-TTGACTATGTG
*
46642714 GCACTGAGTGT
1 GCACTAAGTGT
46642725 ACGGGCTCAA
Statistics
Matches: 123, Mismatches: 19, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
26 1 0.01
27 96 0.78
28 26 0.21
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (26 bp):
GCACTAAGTGTGCGATTGACTATGTG
Found at i:46642666 original size:82 final size:81
Alignment explanation
Indices: 46642551--46642706 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
46642541 AAATTGTACA
* * *
46642551 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
46642615 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
46642632 GCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
46642697 TGCGAGTTGA
65 TGCGAATTGA
46642707 ATATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 18 0.27
82 48 0.73
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:46642718 original size:82 final size:81
Alignment explanation
Indices: 46642547--46642724 Score: 214
Period size: 82 Copynumber: 2.2 Consensus size: 81
46642537 GATTAAATTG
* * *
46642547 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
*
46642612 GTGTGCGAATTGACCA
66 GTGTGCGAATTGAACA
* * ** *
46642628 TGCGGCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACT
1 TACAGCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* *
46642692 AAGTGTGCGAGTTGAATA
64 AAGTGTGCGAATTGAACA
* *
46642710 TATAGCACTGAGTGT
1 TACAGCACTAAGTGT
46642725 ACGGGCTCAA
Statistics
Matches: 80, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 20 0.25
82 60 0.75
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGAACA
Found at i:46645312 original size:68 final size:68
Alignment explanation
Indices: 46645208--46645350 Score: 277
Period size: 68 Copynumber: 2.1 Consensus size: 68
46645198 TATGCCAAAA
46645208 ATTTCTTCACGAAATTTTCACACAATTATGCAATCATATCATAAACCTCAAAATAATTATAAAAT
1 ATTTC-TCACGAAATTTTCACACAATTATGCAATCATATCATAAACCTCAAAATAATTATAAAAT
46645273 AATT
65 AATT
46645277 ATTTCTCACGAAATTTTCACACAATTATGCAATCATATCATAAACCTCAAAATAATTATAAAATA
1 ATTTCTCACGAAATTTTCACACAATTATGCAATCATATCATAAACCTCAAAATAATTATAAAATA
46645342 ATT
66 ATT
46645345 ATTTCT
1 ATTTCT
46645351 ATCTCGGATT
Statistics
Matches: 74, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
68 69 0.93
69 5 0.07
ACGTcount: A:0.44, C:0.17, G:0.03, T:0.36
Consensus pattern (68 bp):
ATTTCTCACGAAATTTTCACACAATTATGCAATCATATCATAAACCTCAAAATAATTATAAAATA
ATT
Found at i:46650757 original size:56 final size:56
Alignment explanation
Indices: 46650666--46650788 Score: 176
Period size: 55 Copynumber: 2.2 Consensus size: 56
46650656 GAGATTGGCG
* * *
46650666 CTAAGTGTGCGGGTTTAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAG-TTGATTATATAGCA
* *
46650723 CTAAGTGTGCGAGTTT-GATTATATAGCACTAAGTGTGCGAGTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAGTTGATTATATAGCA
*
46650778 CTGAGTGTGCG
1 CTAAGTGTGCG
46650789 GACTTAATAT
Statistics
Matches: 60, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
55 23 0.38
56 22 0.37
57 15 0.25
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.33
Consensus pattern (56 bp):
CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAGTTGATTATATAGCA
Found at i:46650775 original size:27 final size:28
Alignment explanation
Indices: 46650666--46650788 Score: 176
Period size: 28 Copynumber: 4.4 Consensus size: 28
46650656 GAGATTGGCG
* * * *
46650666 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
*
46650695 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
46650723 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
46650751 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
46650778 CTGAGTGTGCG
1 CTAAGTGTGCG
46650789 GACTTAATAT
Statistics
Matches: 87, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 24 0.28
28 48 0.55
29 15 0.17
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.33
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:46650799 original size:27 final size:27
Alignment explanation
Indices: 46650691--46650801 Score: 116
Period size: 28 Copynumber: 4.0 Consensus size: 27
46650681 TAAATTGTAC
* * *
46650691 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
46650719 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
46650747 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
46650774 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
46650801 A
1 A
46650802 CTTTTGAATC
Statistics
Matches: 77, Mismatches: 5, Indels: 3
0.91 0.06 0.04
Matches are distributed among these distances:
27 30 0.39
28 47 0.61
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:46658976 original size:27 final size:28
Alignment explanation
Indices: 46658892--46658989 Score: 162
Period size: 28 Copynumber: 3.5 Consensus size: 28
46658882 TAAATTGTAC
*
46658892 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
46658920 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
*
46658948 AGCACTAAGTGTGCAAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
*
46658975 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
46658990 GACTTAATAT
Statistics
Matches: 66, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
27 23 0.35
28 43 0.65
ACGTcount: A:0.28, C:0.12, G:0.28, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATAT
Found at i:46659000 original size:27 final size:27
Alignment explanation
Indices: 46658892--46659002 Score: 89
Period size: 28 Copynumber: 4.0 Consensus size: 27
46658882 TAAATTGTAC
** * *
46658892 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGC-AACTTGAATATAT
** *
46658920 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGC-AACTTGAATATAT
* *
46658948 AGCACTAAGTGTGCAAGTTGATTATAT
1 AGCACTAAGTGTGCAACTTGAATATAT
* *
46658975 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-AACTTGAATATAT
46659002 A
1 A
46659003 CATTTGAATC
Statistics
Matches: 75, Mismatches: 7, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
27 31 0.41
28 44 0.59
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCAACTTGAATATAT
Found at i:46660603 original size:26 final size:26
Alignment explanation
Indices: 46660574--46660625 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
46660564 GCTTATGACT
*
46660574 TAATCTAAAATGTACAGATTAAAACA
1 TAATCCAAAATGTACAGATTAAAACA
*
46660600 TAATCCAAAATGTACATATTAAAACA
1 TAATCCAAAATGTACAGATTAAAACA
46660626 ATTTATTACA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.54, C:0.13, G:0.06, T:0.27
Consensus pattern (26 bp):
TAATCCAAAATGTACAGATTAAAACA
Found at i:46662219 original size:40 final size:40
Alignment explanation
Indices: 46662148--46662328 Score: 251
Period size: 40 Copynumber: 4.6 Consensus size: 40
46662138 AAACCAAGTA
** * *
46662148 CCTTCGGGGTTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGTTATAG-TAACTCGCACAAATG
* *
46662187 CCTTCAGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
46662227 CCTTCGGGACTTGGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
* *
46662267 CCTTCGGGACTTAGCCCAGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
46662307 CCTTCGGG-CTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGTTAT
46662329 CAATCCGAAT
Statistics
Matches: 126, Mismatches: 14, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
39 24 0.19
40 102 0.81
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.27
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
Found at i:46674549 original size:49 final size:49
Alignment explanation
Indices: 46674492--46674729 Score: 217
Period size: 50 Copynumber: 4.8 Consensus size: 49
46674482 TAGCCAAAGC
* * *
46674492 TATCTGGTACGCACAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
* * *
46674541 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAC
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACC-AAT
* ** * * * * *
46674591 CATCTAATACACGTAGTAGCCTACAATTAGTACTACACACGTGATCGAATT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-T
* * *
46674642 TATCGGGTACGCATAGTA-CCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
* * * * ** * *
46674690 AACCCGGTATATGTAGTAGCATGCACTTAGTGCTACACAC
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACAC
46674730 ATGACCTCAC
Statistics
Matches: 151, Mismatches: 34, Indels: 8
0.78 0.18 0.04
Matches are distributed among these distances:
48 12 0.08
49 62 0.41
50 64 0.42
51 13 0.09
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (49 bp):
TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
Found at i:46674671 original size:50 final size:49
Alignment explanation
Indices: 46674492--46674735 Score: 220
Period size: 49 Copynumber: 4.9 Consensus size: 49
46674482 TAGCCAAAGC
* * * *
46674492 TATCTGGTACGCACAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
* *
46674541 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAC
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC-AAT
* ** * * * *
46674591 CATCTAATACACGTAGTAGCCTACAATTAGTACTACACACGTGATCGAATT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-T
* * * *
46674642 TATCGGGTACGCATAGTA-CCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
* * * * ** * * *
46674690 AACCCGGTATATGTAGTAGCATGCACTTAGTGCTACACACATGACC
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC
46674736 TCACAACAGA
Statistics
Matches: 155, Mismatches: 36, Indels: 8
0.78 0.18 0.04
Matches are distributed among these distances:
48 12 0.08
49 66 0.43
50 64 0.41
51 13 0.08
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (49 bp):
TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
Found at i:46681575 original size:15 final size:15
Alignment explanation
Indices: 46681555--46681585 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
46681545 ATTAATTTCA
46681555 TTTACATAGCAACAT
1 TTTACATAGCAACAT
*
46681570 TTTACATAGGAACAT
1 TTTACATAGCAACAT
46681585 T
1 T
46681586 ACAATAACAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.39, C:0.16, G:0.10, T:0.35
Consensus pattern (15 bp):
TTTACATAGCAACAT
Found at i:46690991 original size:42 final size:41
Alignment explanation
Indices: 46690846--46690997 Score: 117
Period size: 42 Copynumber: 3.7 Consensus size: 41
46690836 AATCATGCCA
* * * * **
46690846 ATGCCATATTCCAAATATGGTCTTACATGGGATCTCATATTG
1 ATGCCATATCCCAGATATGGTCTTACA-AGAATCTCATAACG
* * * * *
46690888 ATGCCA-ATAGCCAGCTATGGTCTTACAAGATTCTTATATCG
1 ATGCCATAT-CCCAGATATGGTCTTACAAGAATCTCATAACG
* * *
46690929 ATGCCATGTCCCAGACATGGTCTTACACGAAATCTCATAACG
1 ATGCCATATCCCAGATATGGTCTTACAAG-AATCTCATAACG
* * *
46690971 ATGTCATATCCCATATATGGTATTACA
1 ATGCCATATCCCAGATATGGTCTTACA
46690998 TGTAAACTCA
Statistics
Matches: 86, Mismatches: 21, Indels: 6
0.76 0.19 0.05
Matches are distributed among these distances:
41 33 0.38
42 53 0.62
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.32
Consensus pattern (41 bp):
ATGCCATATCCCAGATATGGTCTTACAAGAATCTCATAACG
Found at i:46701401 original size:42 final size:42
Alignment explanation
Indices: 46701241--46701403 Score: 186
Period size: 42 Copynumber: 3.9 Consensus size: 42
46701231 ATACCAATGT
* ** *
46701241 CATATCCCAGATATGGTCTTACATGGGATCTCATATCGATGC
1 CATATCCCAGATATGGTCTTACACGAAATCTCATAACGATGC
* * * * *
46701283 CAATAGCCTAGCTATGGTCTTACACG-ATTCTCATATCGATGC
1 C-ATATCCCAGATATGGTCTTACACGAAATCTCATAACGATGC
* * *
46701325 CATGTCCCAGACATGGTCTTACACGAATTCTCATAACGATGC
1 CATATCCCAGATATGGTCTTACACGAAATCTCATAACGATGC
46701367 CATATCCCAGATATGGTCTTACACGTAAAT-TCATAAC
1 CATATCCCAGATATGGTCTTACACG-AAATCTCATAAC
46701404 CCTAATGTCA
Statistics
Matches: 103, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
41 19 0.18
42 61 0.59
43 23 0.22
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.29
Consensus pattern (42 bp):
CATATCCCAGATATGGTCTTACACGAAATCTCATAACGATGC
Found at i:46719293 original size:26 final size:26
Alignment explanation
Indices: 46719228--46719311 Score: 113
Period size: 26 Copynumber: 3.3 Consensus size: 26
46719218 CTGGAGGCCT
46719228 AGCCTCTTTT-AAT-AACTGGGGCA-A
1 AGCC-CTTTTCAATAAACTGGGGCATA
**
46719252 AGCCC-TTTCGGTAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
46719277 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
46719303 AGCCCTTTT
1 AGCCCTTTT
46719312 TCACTTCCTC
Statistics
Matches: 52, Mismatches: 4, Indels: 6
0.84 0.06 0.10
Matches are distributed among these distances:
22 3 0.06
23 2 0.04
24 14 0.27
25 6 0.12
26 27 0.52
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (26 bp):
AGCCCTTTTCAATAAACTGGGGCATA
Found at i:46719388 original size:20 final size:20
Alignment explanation
Indices: 46719363--46719415 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 20
46719353 ATGAATACAA
*
46719363 CATGTGCATTTCATA-CATAT
1 CATGTGCATATCATATCA-AT
46719383 CATGTGCATATCATATCAAT
1 CATGTGCATATCATATCAAT
46719403 CATGT--ATATCATA
1 CATGTGCATATCATA
46719416 GCCCACGTAT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
18 8 0.26
20 21 0.68
21 2 0.06
ACGTcount: A:0.34, C:0.19, G:0.09, T:0.38
Consensus pattern (20 bp):
CATGTGCATATCATATCAAT
Found at i:46719471 original size:25 final size:25
Alignment explanation
Indices: 46719443--46719490 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
46719433 ATAATTAAAC
* * *
46719443 CCTAAGGGTATAATGGTCATTTTTA
1 CCTAAGGGCAAAATAGTCATTTTTA
*
46719468 CCTAGGGGCAAAATAGTCATTTT
1 CCTAAGGGCAAAATAGTCATTTT
46719491 CATACTATAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.29, C:0.15, G:0.21, T:0.35
Consensus pattern (25 bp):
CCTAAGGGCAAAATAGTCATTTTTA
Found at i:46725189 original size:64 final size:64
Alignment explanation
Indices: 46725086--46725214 Score: 222
Period size: 64 Copynumber: 2.0 Consensus size: 64
46725076 ACTTATTCGA
* *
46725086 GTATGGCCATGCATTTCTAGTCTTACTCCATCAAAAGGACTAATATATTGCTCCCATTATGTAG
1 GTATGACCATGCATTTCTAGTCTTACTCCATCAAAAGGACTAAGATATTGCTCCCATTATGTAG
* *
46725150 GTATGACCATGCATTTCTAGTCTTACTCTATCAAGAGGACTAAGATATTGCTCCCATTATGTAG
1 GTATGACCATGCATTTCTAGTCTTACTCCATCAAAAGGACTAAGATATTGCTCCCATTATGTAG
46725214 G
1 G
46725215 AGGATAAATC
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
64 61 1.00
ACGTcount: A:0.28, C:0.21, G:0.17, T:0.34
Consensus pattern (64 bp):
GTATGACCATGCATTTCTAGTCTTACTCCATCAAAAGGACTAAGATATTGCTCCCATTATGTAG
Found at i:46728425 original size:40 final size:40
Alignment explanation
Indices: 46728374--46728467 Score: 113
Period size: 40 Copynumber: 2.4 Consensus size: 40
46728364 TATCTTGGTA
* *
46728374 TCGCACACTTAGTGCCTCA-TATAGCCGAAGCTA-TTCCAAT
1 TCGCACACTTAGTG-CT-ATTATAACCGAAGCTACTTCAAAT
46728414 TCGCACACTTAGTGCTATTTATAACCGAAGCTACTTCAAAT
1 TCGCACACTTAGTGCTA-TTATAACCGAAGCTACTTCAAAT
*
46728455 T-GCACACTCAGTG
1 TCGCACACTTAGTG
46728468 TCGAACATAG
Statistics
Matches: 48, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
38 1 0.02
39 2 0.04
40 38 0.79
41 7 0.15
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.29
Consensus pattern (40 bp):
TCGCACACTTAGTGCTATTATAACCGAAGCTACTTCAAAT
Found at i:46736795 original size:40 final size:39
Alignment explanation
Indices: 46736751--46736976 Score: 233
Period size: 40 Copynumber: 5.7 Consensus size: 39
46736741 CTAATGAGGT
* * *
46736751 TAAGTCCCGAAGACATGTGTGCTAGTGATTAATTCCGGGC
1 TAAGTCCCGAAGGCAT-TGTGCGAGTGACTAATTCCGGGC
* * *
46736791 TAAGTCCCGAAGGCATTTGTGCGAGTTACAAATTTCGGGC
1 TAAGTCCCGAAGGCA-TTGTGCGAGTGACTAATTCCGGGC
* *
46736831 TAAGTCCCAAAGGCATTGGTGCGAGTTACTAATTCCGGGC
1 TAAGTCCCGAAGGCATT-GTGCGAGTGACTAATTCCGGGC
46736871 TAAGTCCCGAAGGCATCTGTGCGAGTTG-CTATATT-CGGGC
1 TAAGTCCCGAAGGCAT-TGTGCGAG-TGACTA-ATTCCGGGC
* * * *
46736911 TAAGACCCGAAGGCATTTATGCTAGTGAC-CATATCCGGGC
1 TAAGTCCCGAAGGCA-TTGTGCGAGTGACTAAT-TCCGGGC
* *
46736951 TAAGACCCGAAGGCGTTGTGCGAGTG
1 TAAGTCCCGAAGGCATTGTGCGAGTG
46736977 GTTATATCCG
Statistics
Matches: 159, Mismatches: 18, Indels: 19
0.81 0.09 0.10
Matches are distributed among these distances:
38 2 0.01
39 14 0.09
40 136 0.86
41 7 0.04
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (39 bp):
TAAGTCCCGAAGGCATTGTGCGAGTGACTAATTCCGGGC
Found at i:46736964 original size:120 final size:119
Alignment explanation
Indices: 46736751--46736975 Score: 276
Period size: 120 Copynumber: 1.9 Consensus size: 119
46736741 CTAATGAGGT
* * * *
46736751 TAAGTCCCGAAGACATGTGTGCTAGTGATTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
1 TAAGTCCCGAAGACATCTGTGCGAGTGATTAATTCCGGGCTAAGACCCGAAGGCATTTATGCGAG
* * *
46736816 TTACAAATTTCGGGCTAAGTCCCAAAGGCATTGGTGCGAGTTACTAATTCCGGGC
66 TGACAAATTCCGGGCTAAGACCCAAAGGCATT-GTGCGAGTTACTAATTCCGGGC
* * *
46736871 TAAGTCCCGAAGGCATCTGTGCGAGTTG-CTATATT-CGGGCTAAGACCCGAAGGCATTTATGCT
1 TAAGTCCCGAAGACATCTGTGCGAG-TGATTA-ATTCCGGGCTAAGACCCGAAGGCATTTATGCG
* * *
46736934 AGTGAC-CATATCCGGGCTAAGACCCGAAGGCGTTGTGCGAGT
64 AGTGACAAAT-TCCGGGCTAAGACCCAAAGGCATTGTGCGAGT
46736976 GGTTATATCC
Statistics
Matches: 89, Mismatches: 13, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
119 10 0.11
120 74 0.83
121 5 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (119 bp):
TAAGTCCCGAAGACATCTGTGCGAGTGATTAATTCCGGGCTAAGACCCGAAGGCATTTATGCGAG
TGACAAATTCCGGGCTAAGACCCAAAGGCATTGTGCGAGTTACTAATTCCGGGC
Found at i:46754158 original size:48 final size:48
Alignment explanation
Indices: 46754103--46754198 Score: 192
Period size: 48 Copynumber: 2.0 Consensus size: 48
46754093 AAAGAAGAAA
46754103 GATAAAATAGAGCTTTTATTTTCAACACTTGCATAGCTTGATTGAGGT
1 GATAAAATAGAGCTTTTATTTTCAACACTTGCATAGCTTGATTGAGGT
46754151 GATAAAATAGAGCTTTTATTTTCAACACTTGCATAGCTTGATTGAGGT
1 GATAAAATAGAGCTTTTATTTTCAACACTTGCATAGCTTGATTGAGGT
46754199 ATGTTTTGAG
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.31, C:0.12, G:0.19, T:0.38
Consensus pattern (48 bp):
GATAAAATAGAGCTTTTATTTTCAACACTTGCATAGCTTGATTGAGGT
Found at i:46767516 original size:45 final size:45
Alignment explanation
Indices: 46767445--46767539 Score: 138
Period size: 45 Copynumber: 2.1 Consensus size: 45
46767435 ATTGTTTATC
* *
46767445 GAAATATGATATCGGGCTTCGGGCCTAGCAGGCTATGATGCCGGT
1 GAAATATGATATCGGGCTTCGAGCCTAGCAGGCTATAATGCCGGT
* *
46767490 GAAATATTAT-TCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGT
1 GAAATATGATATCGGG-CTTCGAGCCTAGCAGGCTATAATGCCGGT
46767535 GAAAT
1 GAAAT
46767540 GAAATGTTAT
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
44 5 0.11
45 40 0.89
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.26
Consensus pattern (45 bp):
GAAATATGATATCGGGCTTCGAGCCTAGCAGGCTATAATGCCGGT
Found at i:46767916 original size:45 final size:45
Alignment explanation
Indices: 46767852--46768339 Score: 696
Period size: 45 Copynumber: 10.9 Consensus size: 45
46767842 GTTGATTTGA
*
46767852 TTATTCAGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATG
1 TTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATG
*
46767897 TTATTCGGGCCTTTGAGCCTAGCAAGCTATAATGCCGGTGAAATG
1 TTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATG
* * *
46767942 TTATTCGGTCTTTTGAGCCTAGTAGGCTATAATGCCGGTGAAATG
1 TTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATG
46767987 TTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATG
1 TTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATG
** *
46768032 TTATTCCAGCCTTTGAGCCTAGCAGGCTATAATGCTGGTGAAATG
1 TTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATG
* *
46768077 TTATTCCGGCCTTTGAGCATAGCAGGCTATAATGCCGGTGAAATG
1 TTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATG
** *
46768122 TTATTCCAGCCTTTGAGCCTAGCAGGCTATAATGCCAGTGAAATG
1 TTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATG
* * * *
46768167 TTATTCGAGCCTTTGAGCCTAGCAGGCTATAATGTCGGTGAGATA
1 TTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATG
** * *
46768212 TTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGTTGGTGAGATA
1 TTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATG
* * *
46768257 CTATTCGGG-CTTTCGAGCCTAACAGACTATAATGCCGGTGAAATG
1 TTATTCGGGCCTTT-GAGCCTAGCAGGCTATAATGCCGGTGAAATG
* * *
46768302 ATA-TCGGGCC-TCGAGCCTAGCAGGCGA-AATGCCGGTGA
1 TTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
46768340 TTTGAGAAAA
Statistics
Matches: 404, Mismatches: 37, Indels: 7
0.90 0.08 0.02
Matches are distributed among these distances:
42 11 0.03
43 12 0.03
44 10 0.02
45 371 0.92
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (45 bp):
TTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATG
Found at i:46775580 original size:18 final size:18
Alignment explanation
Indices: 46775544--46775580 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
46775534 CATTGTAACA
* *
46775544 TCGTGATTTTTGGGCTTT
1 TCGTGATTTTTGAGATTT
46775562 TCGTGATTTTTGAGATTT
1 TCGTGATTTTTGAGATTT
46775580 T
1 T
46775581 GGTAAAGTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.11, C:0.08, G:0.24, T:0.57
Consensus pattern (18 bp):
TCGTGATTTTTGAGATTT
Found at i:46777355 original size:20 final size:20
Alignment explanation
Indices: 46777330--46777396 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
46777320 ATTTTGATAT
* *
46777330 ACATGATATGCATGATATGA
1 ACATGATATGTATGATATGC
46777350 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
46777370 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
46777390 ACATGAT
1 ACATGAT
46777397 GTATTCATAA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 45 1.00
ACGTcount: A:0.37, C:0.10, G:0.19, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:46777384 original size:9 final size:9
Alignment explanation
Indices: 46777324--46777390 Score: 71
Period size: 9 Copynumber: 7.0 Consensus size: 9
46777314 CATGGGATTT
*
46777324 TGATATACA
1 TGATATGCA
46777333 TGATATGCA
1 TGATATGCA
46777342 TGATATGAACA
1 TGATATG--CA
*
46777353 TGATATGTA
1 TGATATGCA
46777362 TGATATGCACA
1 TGATATG--CA
*
46777373 TGATATGTA
1 TGATATGCA
46777382 TGATATGCA
1 TGATATGCA
46777391 CATGATGTAT
Statistics
Matches: 49, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
9 32 0.65
11 17 0.35
ACGTcount: A:0.37, C:0.09, G:0.19, T:0.34
Consensus pattern (9 bp):
TGATATGCA
Found at i:46777410 original size:40 final size:39
Alignment explanation
Indices: 46777330--46777410 Score: 101
Period size: 40 Copynumber: 2.0 Consensus size: 39
46777320 ATTTTGATAT
*
46777330 ACATGATATGCATGATATGAACATGATATGTATGATATGC
1 ACATGATATGCATGATATGAACATGA-ATGTATCATATGC
* *
46777370 ACATGATATGTATGATATGCACATG-ATGTATTCATAATGC
1 ACATGATATGCATGATATGAACATGAATGTA-TCAT-ATGC
46777410 A
1 A
46777411 TTGGGTTGGG
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
38 5 0.14
39 3 0.08
40 28 0.78
ACGTcount: A:0.37, C:0.11, G:0.19, T:0.33
Consensus pattern (39 bp):
ACATGATATGCATGATATGAACATGAATGTATCATATGC
Found at i:46777509 original size:24 final size:25
Alignment explanation
Indices: 46777442--46777525 Score: 136
Period size: 25 Copynumber: 3.4 Consensus size: 25
46777432 GGAGGAAGTG
46777442 CAAAAGGGCTTTTGCCCCAGTTTAT
1 CAAAAGGGCTTTTGCCCCAGTTTAT
46777467 CAAAAGGGCTTTTGCCCCAGTTTAT
1 CAAAAGGGCTTTTGCCCCAGTTTAT
46777492 CAAAAGGGC-TTTGCCCCAG-TTAT
1 CAAAAGGGCTTTTGCCCCAGTTTAT
*
46777515 TAAAAGAGGCT
1 CAAAAG-GGCT
46777526 AGGCCTCCAG
Statistics
Matches: 56, Mismatches: 1, Indels: 4
0.92 0.02 0.07
Matches are distributed among these distances:
23 9 0.16
24 13 0.23
25 34 0.61
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (25 bp):
CAAAAGGGCTTTTGCCCCAGTTTAT
Found at i:46777536 original size:49 final size:50
Alignment explanation
Indices: 46777442--46777537 Score: 126
Period size: 49 Copynumber: 1.9 Consensus size: 50
46777432 GGAGGAAGTG
**
46777442 CAAAAGGGCTTTTGCCCCAGTTTATCAAAAGGGCTTTTGCCCCAGTTTAT
1 CAAAAGGGCTTTTGCCCCAGTTTATCAAAAGGGCTTAGGCCCCAGTTTAT
*
46777492 CAAAAGGGC-TTTGCCCCAG-TTATTAAAAGAGGC-TAGGCCTCCAGTT
1 CAAAAGGGCTTTTGCCCCAGTTTATCAAAAG-GGCTTAGGCC-CCAGTT
46777538 ATATGATAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
48 13 0.32
49 19 0.46
50 9 0.22
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (50 bp):
CAAAAGGGCTTTTGCCCCAGTTTATCAAAAGGGCTTAGGCCCCAGTTTAT
Found at i:46785256 original size:24 final size:24
Alignment explanation
Indices: 46785213--46785258 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
46785203 CCTTATAATA
* * *
46785213 TAAAATGACTATTTTGCCCCTATG
1 TAAAATGACCATTATACCCCTATG
46785237 TAAAATGACCATTATACCCCTA
1 TAAAATGACCATTATACCCCTA
46785259 GGGTTTAATT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.35, C:0.24, G:0.09, T:0.33
Consensus pattern (24 bp):
TAAAATGACCATTATACCCCTATG
Found at i:46785323 original size:11 final size:11
Alignment explanation
Indices: 46785307--46785343 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
46785297 ACACGATATG
46785307 CATGATATGCA
1 CATGATATGCA
46785318 CATGATATG--
1 CATGATATGCA
*
46785327 TATGATATGCA
1 CATGATATGCA
46785338 CATGAT
1 CATGAT
46785344 GTATTCATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
9 8 0.36
11 14 0.64
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.32
Consensus pattern (11 bp):
CATGATATGCA
Found at i:46785326 original size:20 final size:20
Alignment explanation
Indices: 46785301--46785343 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
46785291 TGATATACAC
46785301 GATATGCATGATATGCACAT
1 GATATGCATGATATGCACAT
*
46785321 GATATGTATGATATGCACAT
1 GATATGCATGATATGCACAT
46785341 GAT
1 GAT
46785344 GTATTCATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.35, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
GATATGCATGATATGCACAT
Found at i:46785456 original size:24 final size:25
Alignment explanation
Indices: 46785390--46785472 Score: 134
Period size: 25 Copynumber: 3.4 Consensus size: 25
46785380 GAGGAAGTGC
*
46785390 AAAAGGGCTTTTGCCCCAGTTTATC
1 AAAAGGGCTTTTGCCCCAGTTTATT
46785415 AAAAGGGCTTTTGCCCCAGTTTATT
1 AAAAGGGCTTTTGCCCCAGTTTATT
46785440 AAAAGGGC-TTTGCCCCAG-TTATT
1 AAAAGGGCTTTTGCCCCAGTTTATT
46785463 AAAAGAGGCT
1 AAAAG-GGCT
46785473 AGGCCTCTAG
Statistics
Matches: 55, Mismatches: 1, Indels: 4
0.92 0.02 0.07
Matches are distributed among these distances:
23 10 0.18
24 13 0.24
25 32 0.58
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30
Consensus pattern (25 bp):
AAAAGGGCTTTTGCCCCAGTTTATT
Found at i:46785720 original size:31 final size:31
Alignment explanation
Indices: 46785681--46785771 Score: 105
Period size: 38 Copynumber: 2.8 Consensus size: 31
46785671 CATTTACAGT
46785681 AAAA-GCTTCGGCCCAGTAATATGAAATATG
1 AAAAGGCTTCGGCCCAGTAATATGAAATATG
46785711 AAAAGGCTTCGGCCCAGTGTTATGAAATATGAAATATG
1 AAAAGGCTTCGGCCCA--G---T--AATATGAAATATG
46785749 AAAAGGCTTCGGCCCAGT-ATATG
1 AAAAGGCTTCGGCCCAGTAATATG
46785772 CTGAAATTGA
Statistics
Matches: 53, Mismatches: 0, Indels: 16
0.77 0.00 0.23
Matches are distributed among these distances:
30 9 0.17
31 11 0.21
33 2 0.04
36 2 0.04
38 29 0.55
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.24
Consensus pattern (31 bp):
AAAAGGCTTCGGCCCAGTAATATGAAATATG
Found at i:46786790 original size:40 final size:40
Alignment explanation
Indices: 46786707--46786892 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
46786697 TTCTAGCGCA
* * *
46786707 AGCCTACGGGTCTTTAA-CCCGGATACCATTCCAGCACGA-
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCA-TAT
* * *
46786746 AGCCTGCGGGTCTTTATGCTCAGATACAATTCCAGCATAT
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCATAT
**
46786786 AGCCTGTAGGTCTTTAAGCCCGGATACAATTCCAGCATAT
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCATAT
** *
46786826 AGCCTATGGGTCTTTAAGCCCGGATACACTTCCAGCATAT
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCATAT
46786866 AGCCTGCGGGTCTTTATA-CCCGGATAC
1 AGCCTGCGGGTCTTTA-AGCCCGGATAC
46786893 CACATCAAAT
Statistics
Matches: 128, Mismatches: 16, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
39 16 0.12
40 111 0.87
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (40 bp):
AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCATAT
Found at i:46788175 original size:21 final size:21
Alignment explanation
Indices: 46788150--46788190 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
46788140 CGGCAATTTC
46788150 AATTCATACCTTT-CAACCATG
1 AATTCA-ACCTTTACAACCATG
*
46788171 AATTCAACTTTTACAACCAT
1 AATTCAACCTTTACAACCAT
46788191 CATTTAAGCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.37, C:0.27, G:0.02, T:0.34
Consensus pattern (21 bp):
AATTCAACCTTTACAACCATG
Found at i:46794581 original size:40 final size:40
Alignment explanation
Indices: 46794498--46794672 Score: 228
Period size: 40 Copynumber: 4.4 Consensus size: 40
46794488 TTCTAGCGCA
* * * *
46794498 AGCCTACGGGTCTTTAA-CCCGGATACCATTCCAGCACGA-
1 AGCCTGCGGGTCTTTAAGCCCGAATACAATTCCAGCA-TAT
* *
46794537 AGCCTGCGGGTCTTTATGCTCGAATACAATTCCAGCATAT
1 AGCCTGCGGGTCTTTAAGCCCGAATACAATTCCAGCATAT
* *
46794577 AGCCTGCGGGTCTTTAAGCCCAAATACAATTCTAGCATAT
1 AGCCTGCGGGTCTTTAAGCCCGAATACAATTCCAGCATAT
* *
46794617 AGCCTGCGGGTCTTTAAGCCCGGATACACTTCCAGCATAT
1 AGCCTGCGGGTCTTTAAGCCCGAATACAATTCCAGCATAT
*
46794657 AGCCTGCGGGTTTTTA
1 AGCCTGCGGGTCTTTA
46794673 TACCCGGATA
Statistics
Matches: 119, Mismatches: 15, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
39 16 0.13
40 103 0.87
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (40 bp):
AGCCTGCGGGTCTTTAAGCCCGAATACAATTCCAGCATAT
Found at i:46795966 original size:21 final size:21
Alignment explanation
Indices: 46795941--46795981 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
46795931 CGGCAATTTC
46795941 AATTCATACCTTT-CAACCATG
1 AATTCA-ACCTTTACAACCATG
*
46795962 AATTCAACTTTTACAACCAT
1 AATTCAACCTTTACAACCAT
46795982 CATTTAAGCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.37, C:0.27, G:0.02, T:0.34
Consensus pattern (21 bp):
AATTCAACCTTTACAACCATG
Found at i:46800276 original size:28 final size:28
Alignment explanation
Indices: 46800213--46800310 Score: 128
Period size: 27 Copynumber: 3.5 Consensus size: 28
46800203 ATATTAAGTC
*
46800213 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
46800240 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * *
46800268 CGCACACTTAGTGCTGA-ACAATTTAAACC
1 CGCACACTTAGTGCT-ATATAA-TCAAACT
46800297 CGCACACTTAGTGC
1 CGCACACTTAGTGC
46800311 CAATCTCATG
Statistics
Matches: 64, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
27 22 0.34
28 22 0.34
29 20 0.31
ACGTcount: A:0.33, C:0.29, G:0.13, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:46811028 original size:47 final size:47
Alignment explanation
Indices: 46810959--46811052 Score: 179
Period size: 47 Copynumber: 2.0 Consensus size: 47
46810949 CTGGGCCATG
*
46810959 TTGGGCCGAAATGGGCGATGTGGGCCCTACGAGTAAACCACACGAAC
1 TTGGGCCAAAATGGGCGATGTGGGCCCTACGAGTAAACCACACGAAC
46811006 TTGGGCCAAAATGGGCGATGTGGGCCCTACGAGTAAACCACACGAAC
1 TTGGGCCAAAATGGGCGATGTGGGCCCTACGAGTAAACCACACGAAC
46811053 GTGTGGAGTT
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.29, C:0.26, G:0.31, T:0.15
Consensus pattern (47 bp):
TTGGGCCAAAATGGGCGATGTGGGCCCTACGAGTAAACCACACGAAC
Found at i:46818471 original size:19 final size:19
Alignment explanation
Indices: 46818447--46818488 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
46818437 GCTATTTTGC
46818447 ATAAGT-TGTAAAATAGATG
1 ATAAGTGTGTAAAATAG-TG
*
46818466 ATAAGTGTGTGAAATAGTG
1 ATAAGTGTGTAAAATAGTG
46818485 ATAA
1 ATAA
46818489 TTTGGAGTTG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 12 0.57
20 9 0.43
ACGTcount: A:0.45, C:0.00, G:0.24, T:0.31
Consensus pattern (19 bp):
ATAAGTGTGTAAAATAGTG
Found at i:46821471 original size:180 final size:180
Alignment explanation
Indices: 46821169--46821707 Score: 805
Period size: 180 Copynumber: 3.0 Consensus size: 180
46821159 CATCGGGGAT
* * * * **
46821169 CTGTACCATGAGATAAATAATTTTTAGTGAAGAAAGATCAGAACTGTCAGACAGTGAAACAGGGG
1 CTGTACCATGAGATAAATAATATTTAGTGAAGAGAGGTCGGAACTGTTGGACAGTGAAACAGGGG
* *
46821234 TATATTTAATGAATAAACCGTACTAATTGGCTAAACCAAAAATT-TTGAAAATTTTATGGTAAGA
66 TATATTTAATGAATAAACTGTATTAATTGGCTAAACCAAAAATTCTT-AAAATTTTATGGTAAGA
46821298 ATATATGTGAGTCTAGTTT-TTGGGAAAATTAGTGGTTCTTAATTTGGAGTC
130 ATATATGTGAGTCTAGTTTCTT-GGAAAATTAGTGGTTCTTAATTTGGAGTC
* * * *
46821349 CTGTACCATGAGTTAAATAATATTTAGTGAAGAGAGGTCGGACCTATTGGACAGTGAAATAGGGG
1 CTGTACCATGAGATAAATAATATTTAGTGAAGAGAGGTCGGAACTGTTGGACAGTGAAACAGGGG
* **
46821414 TAAATTTAATGAATAAACTGTATTAATTGGCTAAATAAAAAATTCTTAAAATTTTATGGTAAGAA
66 TATATTTAATGAATAAACTGTATTAATTGGCTAAACCAAAAATTCTTAAAATTTTATGGTAAGAA
* * *
46821479 TATATGTGAGTCTAGTTTCTTGAAAAATTAGTGGTTCATAATTTAGAGTC
131 TATATGTGAGTCTAGTTTCTTGGAAAATTAGTGGTTCTTAATTTGGAGTC
* *
46821529 CTGTACCATGAGATAAATAATATTTAGTGAAGAGAGGTCGGAACTGTTGGACAATGAAACAAGGG
1 CTGTACCATGAGATAAATAATATTTAGTGAAGAGAGGTCGGAACTGTTGGACAGTGAAACAGGGG
* *
46821594 TATCTTTAATGAATAAACTGTATTAATTGGCTAAACCAAAAATTCTAAAAATTTTATGGTAAGAA
66 TATATTTAATGAATAAACTGTATTAATTGGCTAAACCAAAAATTCTTAAAATTTTATGGTAAGAA
* * *
46821659 TATATGTGAGTCTAGTTTCTAAGG-AAATTAATGGATCTTAATTTGGAGT
131 TATATGTGAGTCTAGTTTCT-TGGAAAATTAGTGGTTCTTAATTTGGAGT
46821708 TCCGTAGCTC
Statistics
Matches: 321, Mismatches: 35, Indels: 6
0.89 0.10 0.02
Matches are distributed among these distances:
180 316 0.98
181 5 0.02
ACGTcount: A:0.38, C:0.09, G:0.20, T:0.33
Consensus pattern (180 bp):
CTGTACCATGAGATAAATAATATTTAGTGAAGAGAGGTCGGAACTGTTGGACAGTGAAACAGGGG
TATATTTAATGAATAAACTGTATTAATTGGCTAAACCAAAAATTCTTAAAATTTTATGGTAAGAA
TATATGTGAGTCTAGTTTCTTGGAAAATTAGTGGTTCTTAATTTGGAGTC
Found at i:46823671 original size:37 final size:37
Alignment explanation
Indices: 46823621--46823699 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
46823611 TTATTACGAA
* * *
46823621 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
46823658 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
46823695 GTCTT
1 GTCTT
46823700 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:46824132 original size:49 final size:47
Alignment explanation
Indices: 46823817--46824295 Score: 793
Period size: 47 Copynumber: 10.1 Consensus size: 47
46823807 CCCTTCGGGA
* * * * * *
46823817 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
46823864 CCTGTCACATATATATACAC-TTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
46823912 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
46823959 C-TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
46824005 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
46824052 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
46824099 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
46824148 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
46824197 CTTATCACATATATATACAC-TTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
46824245 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
46824292 CTTA
1 CTTA
46824296 CTATCATTTC
Statistics
Matches: 415, Mismatches: 10, Indels: 14
0.95 0.02 0.03
Matches are distributed among these distances:
46 66 0.16
47 167 0.40
48 65 0.16
49 117 0.28
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:46827823 original size:37 final size:37
Alignment explanation
Indices: 46827773--46827851 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
46827763 TTATTACGAA
* * *
46827773 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
46827810 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
46827847 GTCTT
1 GTCTT
46827852 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:46828217 original size:49 final size:48
Alignment explanation
Indices: 46827979--46828447 Score: 799
Period size: 47 Copynumber: 9.8 Consensus size: 48
46827969 CTTATACATT
* * * * * *
46827979 TATACACTTTCACATCCATCACGTTGGCCACTCGGCC-TGTCACAATA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATA
46828026 TATACACTTTCACA-TCATCACATCGGCCATTAGGCCTTATCAC-ATA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATA
46828072 TATACACTTTCACATTCATCACATCGGCCATTAGGCC-TATCACATATA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATA
46828120 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC-ATA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATA
46828167 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATA
46828216 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATA
46828265 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC-ATA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATA
46828312 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATA
46828361 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC-ATA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATA
46828408 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
46828448 CTATCATTTC
Statistics
Matches: 407, Mismatches: 6, Indels: 18
0.94 0.01 0.04
Matches are distributed among these distances:
46 40 0.10
47 178 0.44
48 40 0.10
49 149 0.37
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.32
Consensus pattern (48 bp):
TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATA
Found at i:46828313 original size:96 final size:95
Alignment explanation
Indices: 46827969--46828447 Score: 799
Period size: 96 Copynumber: 5.0 Consensus size: 95
46827959 CCCTTCGGGA
* * * * * * *
46827969 CTTAT-ACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCC-TGTCACAATATATACA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACA
46828032 CTTTCACA-TCATCACATCGGCCATTAGGC
66 CTTTCACATTCATCACATCGGCCATTAGGC
46828061 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC-TATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATAC
46828125 ACTTTCACATTCATCACATCGGCCATTAGGC
65 ACTTTCACATTCATCACATCGGCCATTAGGC
46828156 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATAC
46828221 ACTTTCACATTCATCACATCGGCCATTAGGC
65 ACTTTCACATTCATCACATCGGCCATTAGGC
46828252 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC-ATATATA
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATA
46828316 CACTTTCACATTCATCACATCGGCCATTAGGC
64 CACTTTCACATTCATCACATCGGCCATTAGGC
46828348 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC-ATATATA
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATA
46828412 CACTTTCACATTCATCACATCGGCCATTAGGC
64 CACTTTCACATTCATCACATCGGCCATTAGGC
46828444 CTTA
1 CTTA
46828448 CTATCATTTC
Statistics
Matches: 374, Mismatches: 7, Indels: 8
0.96 0.02 0.02
Matches are distributed among these distances:
92 5 0.01
93 42 0.11
94 17 0.05
95 69 0.18
96 194 0.52
98 47 0.13
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.32
Consensus pattern (95 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACA
CTTTCACATTCATCACATCGGCCATTAGGC
Found at i:46834324 original size:47 final size:47
Alignment explanation
Indices: 46834270--46834463 Score: 289
Period size: 47 Copynumber: 4.1 Consensus size: 47
46834260 TTAGGATTTT
** * * *
46834270 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGATTGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
46834317 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
46834364 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
46834411 ATGTGATGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
46834458 ATGTGA
1 ATGTGA
46834464 AATATGTATG
Statistics
Matches: 134, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 134 1.00
ACGTcount: A:0.33, C:0.11, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:46834370 original size:22 final size:22
Alignment explanation
Indices: 46834342--46834417 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
46834332 ACATGCATAT
46834342 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* *
46834364 ATGTGATGAATGTG-AGCAT-G-CA
1 ATGTGAT-AA-G-GCCGAATGGCCA
46834386 TATGTGTGATAAGGCCGAATGGCCA
1 -A--TGTGATAAGGCCGAATGGCCA
46834411 ATGTGAT
1 ATGTGAT
46834418 GAATATGAAC
Statistics
Matches: 41, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 16 0.39
23 8 0.20
24 8 0.20
25 9 0.22
ACGTcount: A:0.30, C:0.13, G:0.32, T:0.25
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:46834498 original size:48 final size:48
Alignment explanation
Indices: 46834433--46834763 Score: 531
Period size: 48 Copynumber: 6.8 Consensus size: 48
46834423 TGAACATGCA
*
46834433 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATG
* * *
46834481 CATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AGTGTG-AA-ATATGTATGAGATATG
*
46834531 TATATGTGGTAAAGCCGAATGGGTAGTGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATG
* *
46834579 TATATGTGGTAAAGCCGAATGG-TCAATGTGGAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AGTGT-GAA-ATATGTATGAGATATG
46834629 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATG
46834677 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATG
46834725 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
46834764 GGCGATGTGC
Statistics
Matches: 266, Mismatches: 9, Indels: 16
0.91 0.03 0.05
Matches are distributed among these distances:
47 2 0.01
48 170 0.64
49 10 0.04
50 82 0.31
51 2 0.01
ACGTcount: A:0.35, C:0.06, G:0.28, T:0.31
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATG
Found at i:46834607 original size:146 final size:144
Alignment explanation
Indices: 46834433--46834763 Score: 540
Period size: 146 Copynumber: 2.3 Consensus size: 144
46834423 TGAACATGCA
46834433 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCG
*
46834498 AATGG-TCAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGGTAGTGTGA
66 AATGGCT-AATGTG-AA-ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGA
46834562 AATATGTATGAGATATG
128 AATATGTATGAGATATG
* *
46834579 TATATGTGGTAAAGCCGAATGG-TCAATGTGGAATATATATATGAGATATGTATATGTGGTAAAG
1 TATATGTGGTAAAGCCGAATGGCT-AATGT-GAA-ATATGTATGAGATATGCATATGTGGTAAAG
* *
46834643 CCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGA
63 CCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGA
46834708 AATATGTATGAGATATG
128 AATATGTATGAGATATG
*
46834725 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
46834764 GGCGATGTGC
Statistics
Matches: 173, Mismatches: 7, Indels: 12
0.90 0.04 0.06
Matches are distributed among these distances:
144 6 0.03
145 4 0.02
146 115 0.66
147 6 0.03
148 41 0.24
149 1 0.01
ACGTcount: A:0.35, C:0.06, G:0.28, T:0.31
Consensus pattern (144 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCG
AATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
ATGTATGAGATATG
Found at i:46834779 original size:98 final size:97
Alignment explanation
Indices: 46834433--46834763 Score: 576
Period size: 98 Copynumber: 3.4 Consensus size: 97
46834423 TGAACATGCA
* *
46834433 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCG
1 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
46834498 AATGGTCAATGTGAAATATATATATGAGATATG
66 AATGGTCAATGTG-AATATATATATGAGATATG
*
46834531 TATATGTGGTAAAGCCGAATGGGTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
1 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
46834596 AATGGTCAATGTGGAATATATATATGAGATATG
66 AATGGTCAATGT-GAATATATATATGAGATATG
46834629 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
1 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
* *
46834694 AATGG-CTAGTGTGAA-ATATGTATGAGATATG
66 AATGGTC-AATGTGAATATATATATGAGATATG
46834725 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
46834764 GGCGATGTGC
Statistics
Matches: 225, Mismatches: 6, Indels: 6
0.95 0.03 0.03
Matches are distributed among these distances:
96 54 0.24
97 4 0.02
98 166 0.74
99 1 0.00
ACGTcount: A:0.35, C:0.06, G:0.28, T:0.31
Consensus pattern (97 bp):
TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
AATGGTCAATGTGAATATATATATGAGATATG
Found at i:46835018 original size:37 final size:37
Alignment explanation
Indices: 46834910--46835018 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
46834900 GGAAATATAT
*
46834910 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
*
46834947 TCCGGCTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
46834984 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
46835019 CGTCTGAGCT
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.23, C:0.20, G:0.30, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:46841925 original size:38 final size:37
Alignment explanation
Indices: 46841874--46841948 Score: 123
Period size: 38 Copynumber: 2.0 Consensus size: 37
46841864 TGTTGGAAAG
*
46841874 GCTTACCGATTTATTAAATGAATTTACTAGCTTTATTC
1 GCTTACCGATTTATTAAATGAACTTACTAGC-TTATTC
*
46841912 GCTTACCGATTTATTAAGTGAACTTACTAGCTTATTC
1 GCTTACCGATTTATTAAATGAACTTACTAGCTTATTC
46841949 AAGCATACCT
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
37 6 0.17
38 29 0.83
ACGTcount: A:0.28, C:0.17, G:0.12, T:0.43
Consensus pattern (37 bp):
GCTTACCGATTTATTAAATGAACTTACTAGCTTATTC
Found at i:46843219 original size:40 final size:40
Alignment explanation
Indices: 46843156--46843232 Score: 127
Period size: 40 Copynumber: 1.9 Consensus size: 40
46843146 CGGTTATTTG
*
46843156 TGGCACTTAGTGTGCGATACAACATAGCTTCGGCTATATA
1 TGGCACCTAGTGTGCGATACAACATAGCTTCGGCTATATA
* *
46843196 TGGCACCTAGTGTGTGATTCAACATAGCTTCGGCTAT
1 TGGCACCTAGTGTGCGATACAACATAGCTTCGGCTAT
46843233 GTACGAAACT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.31
Consensus pattern (40 bp):
TGGCACCTAGTGTGCGATACAACATAGCTTCGGCTATATA
Found at i:46843247 original size:40 final size:40
Alignment explanation
Indices: 46843160--46843252 Score: 123
Period size: 40 Copynumber: 2.3 Consensus size: 40
46843150 TATTTGTGGC
* **
46843160 ACTTAGTGTGCGATACAACATAGCTTCGGCTATATATGGC
1 ACTTAGTGTGCGATACAACATAGCTTCGGCTATATACGAA
* * * *
46843200 ACCTAGTGTGTGATTCAACATAGCTTCGGCTATGTACGAA
1 ACTTAGTGTGCGATACAACATAGCTTCGGCTATATACGAA
46843240 ACTTAGTGTGCGA
1 ACTTAGTGTGCGA
46843253 GATATCGAGT
Statistics
Matches: 44, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 44 1.00
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (40 bp):
ACTTAGTGTGCGATACAACATAGCTTCGGCTATATACGAA
Found at i:46851355 original size:27 final size:27
Alignment explanation
Indices: 46851324--46851770 Score: 526
Period size: 27 Copynumber: 16.5 Consensus size: 27
46851314 TATTGAGTCT
* * *
46851324 GCACACTCAGTGCTATATCA-TCAACTC
1 GCACACTTAGTGCTACAT-AGTCAATTC
* * * *
46851351 GCACACTTAGAGCTACGTAATCAAATC
1 GCACACTTAGTGCTACATAGTCAATTC
*
46851378 GCACACTTAGTGCTACATAGTCAAACTC
1 GCACACTTAGTGCTACATAGTC-AATTC
** *
46851406 GCACACTTAGTGCCGCATGGTCAATTC
1 GCACACTTAGTGCTACATAGTCAATTC
* *
46851433 GCACACTTAGTGC-ATCATATTCATTTC
1 GCACACTTAGTGCTA-CATAGTCAATTC
* *
46851460 GCACACTTAGTGCAACATAGTCAAATC
1 GCACACTTAGTGCTACATAGTCAATTC
*
46851487 GCACACTTAGTGCTACATGGTCAATTC
1 GCACACTTAGTGCTACATAGTCAATTC
* *
46851514 GCACACTTAGTGC-ATCATATTCATTTC
1 GCACACTTAGTGCTA-CATAGTCAATTC
* *
46851541 GCACACTTAGTGCAACATAGTCAAATC
1 GCACACTTAGTGCTACATAGTCAATTC
*
46851568 GCACACTTAGTGCTACATGGTCAATTC
1 GCACACTTAGTGCTACATAGTCAATTC
* *
46851595 GCACACTTAGTGC-ATCATATTCATTTC
1 GCACACTTAGTGCTA-CATAGTCAATTC
* *
46851622 GCACACTTAGTGCAACATAGTCAAATC
1 GCACACTTAGTGCTACATAGTCAATTC
*
46851649 GCACACTTAGTGCTACATGGTCAATTC
1 GCACACTTAGTGCTACATAGTCAATTC
* *
46851676 GCACACTTAGTGC-ATCATATTCATTTC
1 GCACACTTAGTGCTA-CATAGTCAATTC
* *
46851703 GCACACTTAGTGCAACATAGTCAAATC
1 GCACACTTAGTGCTACATAGTCAATTC
*
46851730 GCACACTTAGTGCTACATAGTCAAATC
1 GCACACTTAGTGCTACATAGTCAATTC
46851757 GCACACTTAGTGCT
1 GCACACTTAGTGCT
46851771 GTACAATTTA
Statistics
Matches: 362, Mismatches: 48, Indels: 20
0.84 0.11 0.05
Matches are distributed among these distances:
26 4 0.01
27 331 0.91
28 27 0.07
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (27 bp):
GCACACTTAGTGCTACATAGTCAATTC
Found at i:46851524 original size:81 final size:81
Alignment explanation
Indices: 46851376--46851769 Score: 734
Period size: 81 Copynumber: 4.9 Consensus size: 81
46851366 CGTAATCAAA
* **
46851376 TCGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCCGCATGGTCAATTCGCACACTT
1 TCGCACACTTAGTGCAACATAGTCAAA-TCGCACACTTAGTGCTACATGGTCAATTCGCACACTT
46851441 AGTGCATCATATTCATT
65 AGTGCATCATATTCATT
46851458 TCGCACACTTAGTGCAACATAGTCAAATCGCACACTTAGTGCTACATGGTCAATTCGCACACTTA
1 TCGCACACTTAGTGCAACATAGTCAAATCGCACACTTAGTGCTACATGGTCAATTCGCACACTTA
46851523 GTGCATCATATTCATT
66 GTGCATCATATTCATT
46851539 TCGCACACTTAGTGCAACATAGTCAAATCGCACACTTAGTGCTACATGGTCAATTCGCACACTTA
1 TCGCACACTTAGTGCAACATAGTCAAATCGCACACTTAGTGCTACATGGTCAATTCGCACACTTA
46851604 GTGCATCATATTCATT
66 GTGCATCATATTCATT
46851620 TCGCACACTTAGTGCAACATAGTCAAATCGCACACTTAGTGCTACATGGTCAATTCGCACACTTA
1 TCGCACACTTAGTGCAACATAGTCAAATCGCACACTTAGTGCTACATGGTCAATTCGCACACTTA
46851685 GTGCATCATATTCATT
66 GTGCATCATATTCATT
* *
46851701 TCGCACACTTAGTGCAACATAGTCAAATCGCACACTTAGTGCTACATAGTCAAATCGCACACTTA
1 TCGCACACTTAGTGCAACATAGTCAAATCGCACACTTAGTGCTACATGGTCAATTCGCACACTTA
46851766 GTGC
66 GTGC
46851770 TGTACAATTT
Statistics
Matches: 307, Mismatches: 5, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
81 281 0.92
82 26 0.08
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.29
Consensus pattern (81 bp):
TCGCACACTTAGTGCAACATAGTCAAATCGCACACTTAGTGCTACATGGTCAATTCGCACACTTA
GTGCATCATATTCATT
Found at i:46858615 original size:37 final size:37
Alignment explanation
Indices: 46858565--46858643 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
46858555 TTATTACGAA
* *
46858565 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
46858602 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
46858639 GTCTT
1 GTCTT
46858644 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:46858840 original size:47 final size:47
Alignment explanation
Indices: 46858762--46859251 Score: 813
Period size: 47 Copynumber: 10.5 Consensus size: 47
46858752 CCCTTCGGGA
* * * * * * *
46858762 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
46858809 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
46858856 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
46858903 CTTAT-ACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
46858949 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
46858996 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
46859043 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
46859090 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
46859137 CTTATCACA-ATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
46859183 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
46859230 CTTATCACATATATACACTTTC
1 CTTATCACATATATACACTTTC
46859252 TTGGCTGAAT
Statistics
Matches: 423, Mismatches: 18, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
46 91 0.22
47 332 0.78
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:46859077 original size:187 final size:188
Alignment explanation
Indices: 46858762--46859251 Score: 849
Period size: 187 Copynumber: 2.6 Consensus size: 188
46858752 CCCTTCGGGA
* * * * * * * * * * *
46858762 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACAC
46858827 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
46858892 GGCCATTAGGCCTTAT-ACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
131 GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
46858949 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACAC
* *
46859014 TTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
46859079 GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
131 GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
46859137 CTTATCACA-ATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACAC
46859201 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTC
46859252 TTGGCTGAAT
Statistics
Matches: 287, Mismatches: 15, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
187 237 0.83
188 50 0.17
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (188 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
Found at i:46859171 original size:234 final size:234
Alignment explanation
Indices: 46858762--46859251 Score: 829
Period size: 234 Copynumber: 2.1 Consensus size: 234
46858752 CCCTTCGGGA
* * * * * * *
46858762 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACACATATACAC
46858827 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
46858892 GGCCATTAGGCCTTATACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCAC
131 GGCCATTAGGCCTTATACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCAC
* *
46858957 ATATATACACTTTCACATTCATCACATCGGCTATTAGGC
196 ACATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * * *
46858996 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACAC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACACATATACAC
46859061 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
*
46859126 GGCTATTAGGCCTTATCACA-ATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCA
131 GGCCATTAGGCCTTAT-ACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCA
46859190 CACATATACACTTTCACATTCATCACATCGGCCATTAGGC
195 CACATATACACTTTCACATTCATCACATCGGCCATTAGGC
46859230 CTTATCACATATATACACTTTC
1 CTTATCACATATATACACTTTC
46859252 TTGGCTGAAT
Statistics
Matches: 239, Mismatches: 16, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
234 236 0.99
235 3 0.01
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (234 bp):
CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACACATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGCCTTATACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCAC
ACATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:46864540 original size:46 final size:46
Alignment explanation
Indices: 46864490--46864665 Score: 200
Period size: 46 Copynumber: 3.8 Consensus size: 46
46864480 TGGTTGAGCA
46864490 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
46864536 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
46864581 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
46864629 -CCTGAGCTCATTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
46864666 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 10, Indels: 20
0.79 0.07 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 60 0.55
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:46864646 original size:93 final size:93
Alignment explanation
Indices: 46864487--46864658 Score: 301
Period size: 93 Copynumber: 1.8 Consensus size: 93
46864477 GGATGGTTGA
* *
46864487 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCATTGAGT
46864552 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
46864580 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCATTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCATTGAG
46864644 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
46864659 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 2 0.03
93 73 0.97
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:46870150 original size:42 final size:44
Alignment explanation
Indices: 46870043--46870194 Score: 143
Period size: 42 Copynumber: 3.5 Consensus size: 44
46870033 TCTGAAATAT
* * *
46870043 CGTGTAAGACCGTGTCTGGGACACAGGCCTCGATTTGAGATTTA
1 CGTGTAAGACCATGTCTGGGACACAGGCATCGATCTGAGATTTA
* *
46870087 CGTGTAAGACCATGTCAGGGACATAGGCATCGTATCT-A-ATTT-
1 CGTGTAAGACCATGTCTGGGACACAGGCATCG-ATCTGAGATTTA
* * * *
46870129 TGTGTAAGACCCTGTCTGGGACAGAGGCATCGAAGCTGA-A-TTA
1 CGTGTAAGACCATGTCTGGGACACAGGCATCG-ATCTGAGATTTA
* * *
46870172 CATGTAAGACCACGTCCGGGACA
1 CGTGTAAGACCATGTCTGGGACA
46870195 TCAGCATTGT
Statistics
Matches: 89, Mismatches: 16, Indels: 7
0.79 0.14 0.06
Matches are distributed among these distances:
42 33 0.37
43 24 0.27
44 29 0.33
45 3 0.03
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (44 bp):
CGTGTAAGACCATGTCTGGGACACAGGCATCGATCTGAGATTTA
Found at i:46874554 original size:12 final size:12
Alignment explanation
Indices: 46874533--46874562 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
46874523 ATTGTGCCAC
*
46874533 TTCTTGGATATG
1 TTCTTTGATATG
46874545 TTCTTTGATATG
1 TTCTTTGATATG
46874557 TTCTTT
1 TTCTTT
46874563 ACCCAAATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.13, C:0.10, G:0.17, T:0.60
Consensus pattern (12 bp):
TTCTTTGATATG
Found at i:46880726 original size:21 final size:23
Alignment explanation
Indices: 46880681--46880729 Score: 75
Period size: 21 Copynumber: 2.2 Consensus size: 23
46880671 ATGATGTATG
46880681 ATTTGGTTATAAAATGGTTGAGA
1 ATTTGGTTATAAAATGGTTGAGA
*
46880704 ATTTGG-TATAAAAT-GTTGTGA
1 ATTTGGTTATAAAATGGTTGAGA
46880725 ATTTG
1 ATTTG
46880730 ATGCTAGTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
21 11 0.44
22 8 0.32
23 6 0.24
ACGTcount: A:0.33, C:0.00, G:0.24, T:0.43
Consensus pattern (23 bp):
ATTTGGTTATAAAATGGTTGAGA
Found at i:46887426 original size:42 final size:42
Alignment explanation
Indices: 46887380--46887491 Score: 120
Period size: 42 Copynumber: 2.6 Consensus size: 42
46887370 ATATATGTTA
* *
46887380 TCGTGTAAGACCATGTCTAGGACATTGGCATC-ATACTTGATT
1 TCGTGTAAGACCATGTCTGGGAC-TTGGCAACGATACTTGATT
* *
46887422 TCGTGTAAGAACC-TGTTTGGGACTTGGCAACGATATTTGATT
1 TCGTGTAAG-ACCATGTCTGGGACTTGGCAACGATACTTGATT
* * *
46887464 ACGTATAAGACCACGTCTGGGACGTTGG
1 TCGTGTAAGACCATGTCTGGGAC-TTGG
46887492 TATTGTACGA
Statistics
Matches: 58, Mismatches: 8, Indels: 7
0.79 0.11 0.10
Matches are distributed among these distances:
41 10 0.17
42 41 0.71
43 7 0.12
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (42 bp):
TCGTGTAAGACCATGTCTGGGACTTGGCAACGATACTTGATT
Found at i:46893181 original size:18 final size:16
Alignment explanation
Indices: 46893150--46893183 Score: 50
Period size: 18 Copynumber: 2.0 Consensus size: 16
46893140 TGATTGGGTA
46893150 TTTGGTGGGAATGAAG
1 TTTGGTGGGAATGAAG
46893166 TTTGAGTGGTGAATGAAG
1 TTTG-GTGG-GAATGAAG
46893184 GAGAATGTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 4 0.25
17 4 0.25
18 8 0.50
ACGTcount: A:0.26, C:0.00, G:0.41, T:0.32
Consensus pattern (16 bp):
TTTGGTGGGAATGAAG
Found at i:46893685 original size:29 final size:30
Alignment explanation
Indices: 46893628--46893685 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
46893618 CTTTTGAAAA
* * *
46893628 TATTTACAAAAAGAGGCATCTAATTTTTAT
1 TATTTACAAAAAGAGGCAACAAAATTTTAT
46893658 TATTTACAAAAAGA-GCAACAAAATTTTA
1 TATTTACAAAAAGAGGCAACAAAATTTTA
46893686 AAAATAATTC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
29 11 0.44
30 14 0.56
ACGTcount: A:0.47, C:0.10, G:0.09, T:0.34
Consensus pattern (30 bp):
TATTTACAAAAAGAGGCAACAAAATTTTAT
Found at i:46898903 original size:23 final size:20
Alignment explanation
Indices: 46898865--46898916 Score: 68
Period size: 23 Copynumber: 2.4 Consensus size: 20
46898855 TGATAATAGA
46898865 AAAATATGAAGTAATAATATAAT
1 AAAATAT-AAGTAATAAT-T-AT
46898888 AAAATATAAGTAAATAATTAT
1 AAAATATAAGT-AATAATTAT
46898909 AAAATATA
1 AAAATATA
46898917 TATAATACGT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
21 10 0.36
22 5 0.18
23 13 0.46
ACGTcount: A:0.63, C:0.00, G:0.06, T:0.31
Consensus pattern (20 bp):
AAAATATAAGTAATAATTAT
Found at i:46898917 original size:23 final size:20
Alignment explanation
Indices: 46898857--46898918 Score: 61
Period size: 23 Copynumber: 2.8 Consensus size: 20
46898847 TATTAATATG
*
46898857 ATAATAGAAAAATATGAAGTA
1 ATAATATAAAAATAT-AAGTA
46898878 ATAATATAATAAAATATAAGTAA
1 ATAATAT-A-AAAATATAAGT-A
46898901 ATAATTATAAAATATATA
1 ATAA-TATAAAA-ATATA
46898919 TAATACGTAT
Statistics
Matches: 35, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
21 6 0.17
22 8 0.23
23 18 0.51
24 3 0.09
ACGTcount: A:0.63, C:0.00, G:0.06, T:0.31
Consensus pattern (20 bp):
ATAATATAAAAATATAAGTA
Found at i:46901103 original size:206 final size:206
Alignment explanation
Indices: 46900744--46902328 Score: 2571
Period size: 206 Copynumber: 7.7 Consensus size: 206
46900734 AAATCTGCTT
* * * *
46900744 CTTCAATTTGTTCTCTGCCAATACAAAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAGCGTAAGCAC
* *
46900809 ACGAAAACCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATTCCAAACCATCTT
66 GCGAAAACCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTT
*
46900874 GGATCTGCTTTAGTCTAATCATCTAAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATG
131 GGATCTGCTTCAGTCTAATCATCTAAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATG
46900939 GAGACGCCAAA
196 GAGACGCCAAA
* *
46900950 TTTTGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAGCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAGCGTAAGCAC
*
46901015 GCGAAATCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTT
66 GCGAAAACCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTT
*
46901080 GGATCTGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATG
131 GGATCTGCTTCAGTCTAATCATCTAAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATG
46901145 GAGACGCCAAA
196 GAGACGCCAAA
* * *
46901156 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATATTAGATTTGCTTCAGTGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAGCGTAAGCAC
*
46901221 GCGAAAACCAAATCAGCTATGTCTTCGATTTGCTCATTGTAAGCACAAGGATACCAAACCATCTT
66 GCGAAAACCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTT
* * *
46901286 GGATCTGTTTCAGTCTAATCATCTAAAGGTTAGATCTACTATGTGTTTGCCCTCCGTCGAATATG
131 GGATCTGCTTCAGTCTAATCATCTAAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATG
*
46901351 GAGATGCCAAA
196 GAGACGCCAAA
* * * *
46901362 CTTCAATTTGTTCTCTAACAATACAAAGATTCCAAATCATCTTAGACTTGCTTCAGCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAGCGTAAGCAC
* * *
46901427 GTGAAAACCAAATCAGCTATGTCTTCGATTTTCTCCTTATAAGCACAAGGATACCAAACCATCTT
66 GCGAAAACCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTT
*
46901492 GGATCTGCTTCAGTCTAATCATCTAAAGGTTAGATCTGCTATGTGTCTGCCCTCTGTCGAATATG
131 GGATCTGCTTCAGTCTAATCATCTAAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATG
46901557 GAGACGCCAAA
196 GAGACGCCAAA
* *
46901568 CTTTGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAGCGTAAGCAC
* *
46901633 ACGAAAACCAAATCAGCTATGTCTTCGATTTCCTCCTTGTAAGCACAAGGATACCAAACCATCTT
66 GCGAAAACCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTT
* * * *
46901698 GGATCTCCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATGTGTCTGTCCTCCATCGAATATG
131 GGATCTGCTTCAGTCTAATCATCTAAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATG
46901763 GAGACGCCAAA
196 GAGACGCCAAA
* *
46901774 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACATGCTTTAGCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAGCGTAAGCAC
46901839 GCGAAAACCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTT
66 GCGAAAACCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTT
*
46901904 GGATCTGCTTCAGTCTAATCATC-AGAAGGTTAGATCTACTATGTGTCTGCCCTCCGTCGAATAT
131 GGATCTGCTTCAGTCTAATCATCTA-AAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATAT
*
46901968 GGAGACGCCAAG
195 GGAGACGCCAAA
46901980 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAGCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAGCGTAAGCAC
* * * *
46902045 GCAAAAACCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTT
66 GCGAAAACCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTT
* * * ** * ** * * *
46902110 GGATCTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTATCTGTTCTCTGTCAAACATG
131 GGATCTGCTTCAGTCTAATCATCTAAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATG
46902175 GAGACGCCAAA
196 GAGACGCCAAA
* * * *
46902186 CTTCGATTTGTTCTCTGACAATACAAAGATGCCAAATCATCTTAGATTTGCTTCATCGTACG-AC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAGCGTAAGCAC
* * * * *
46902250 GTGAAAGCCAAATCAGCTATGTCTTCAATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GCGAAAACCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTT
46902315 GGATCTTGCTTCAG
131 GGATC-TGCTTCAG
46902329 CCAGATCTGC
Statistics
Matches: 1282, Mismatches: 94, Indels: 6
0.93 0.07 0.00
Matches are distributed among these distances:
205 67 0.05
206 1215 0.95
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.30
Consensus pattern (206 bp):
CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAGCGTAAGCAC
GCGAAAACCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTT
GGATCTGCTTCAGTCTAATCATCTAAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATG
GAGACGCCAAA
Found at i:46913545 original size:23 final size:20
Alignment explanation
Indices: 46913507--46913558 Score: 68
Period size: 23 Copynumber: 2.4 Consensus size: 20
46913497 TGATAATAGA
46913507 AAAATATGAAGTAATAATATAAT
1 AAAATAT-AAGTAATAAT-T-AT
46913530 AAAATATAAGTAAATAATTAT
1 AAAATATAAGT-AATAATTAT
46913551 AAAATATA
1 AAAATATA
46913559 TATAATACGT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
21 10 0.36
22 5 0.18
23 13 0.46
ACGTcount: A:0.63, C:0.00, G:0.06, T:0.31
Consensus pattern (20 bp):
AAAATATAAGTAATAATTAT
Found at i:46913559 original size:23 final size:20
Alignment explanation
Indices: 46913499--46913560 Score: 61
Period size: 23 Copynumber: 2.8 Consensus size: 20
46913489 TATTAATATG
*
46913499 ATAATAGAAAAATATGAAGTA
1 ATAATATAAAAATAT-AAGTA
46913520 ATAATATAATAAAATATAAGTAA
1 ATAATAT-A-AAAATATAAGT-A
46913543 ATAATTATAAAATATATA
1 ATAA-TATAAAA-ATATA
46913561 TAATACGTAT
Statistics
Matches: 35, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
21 6 0.17
22 8 0.23
23 18 0.51
24 3 0.09
ACGTcount: A:0.63, C:0.00, G:0.06, T:0.31
Consensus pattern (20 bp):
ATAATATAAAAATATAAGTA
Found at i:46916864 original size:27 final size:27
Alignment explanation
Indices: 46916831--46917027 Score: 229
Period size: 27 Copynumber: 7.3 Consensus size: 27
46916821 TACTGAAATG
*
46916831 CCCTCGATTTGTAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* * * *
46916858 CCATCGATTTGTAGAA-TACCGTTTCA
1 CCCTCGATTTATAGAATTACCATTTTA
* * *
46916884 CCCTCGATTTACAAAATTACCCTTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
46916911 CCCTCGATTTATAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* *
46916938 CCCTCAATTTACAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
*
46916965 CCCTCGATTT-TAAAAATTACCATTTTA
1 CCCTCGATTTAT-AGAATTACCATTTTA
* * *
46916992 CCCTC-AGTTTACAAAATTACCGTTTTA
1 CCCTCGA-TTTATAGAATTACCATTTTA
46917019 CCCTCGATT
1 CCCTCGATT
46917028 GTGAAATTAC
Statistics
Matches: 146, Mismatches: 19, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
26 21 0.14
27 124 0.85
28 1 0.01
ACGTcount: A:0.29, C:0.25, G:0.08, T:0.38
Consensus pattern (27 bp):
CCCTCGATTTATAGAATTACCATTTTA
Found at i:46917049 original size:27 final size:27
Alignment explanation
Indices: 46917019--46917209 Score: 162
Period size: 27 Copynumber: 7.1 Consensus size: 27
46917009 TACCGTTTTA
* * *
46917019 CCCTCGATTGTGAAATTACTAAAATAC
1 CCCTAGATTGTAAAATTACCAAAATAC
*
46917046 CCCT-G-TAGGATAAAATTACCAAAATAC
1 CCCTAGAT-TG-TAAAATTACCAAAATAC
*
46917073 CCCTAGTTTGTAAAATTACCAAAATAC
1 CCCTAGATTGTAAAATTACCAAAATAC
* * *
46917100 CCCTAGTTTGTAAAATTATCGAAATAC
1 CCCTAGATTGTAAAATTACCAAAATAC
* * * *
46917127 CACTAGTTTGTGAAATTACCGAAATA-
1 CCCTAGATTGTAAAATTACCAAAATAC
46917153 CCCTCA-ATTTGTAAAATTACCAAAATAC
1 CCCT-AGA-TTGTAAAATTACCAAAATAC
46917181 CCCT-GATT-TACAAAATTA-CAGAAATAC
1 CCCTAGATTGT--AAAATTACCA-AAATAC
46917208 CC
1 CC
46917210 TTGACTTTCT
Statistics
Matches: 140, Mismatches: 13, Indels: 22
0.80 0.07 0.13
Matches are distributed among these distances:
25 2 0.01
26 9 0.06
27 122 0.87
28 6 0.04
29 1 0.01
ACGTcount: A:0.40, C:0.22, G:0.09, T:0.28
Consensus pattern (27 bp):
CCCTAGATTGTAAAATTACCAAAATAC
Found at i:46917100 original size:54 final size:53
Alignment explanation
Indices: 46917026--46917209 Score: 192
Period size: 54 Copynumber: 3.4 Consensus size: 53
46917016 TTACCCTCGA
* * **
46917026 TTGTGAAATTACTAAAATACCCCTGTAGGATAAAATTACCAAAATACCCCTAGT
1 TTGTAAAATTACCAAAATACCCCTGTTTG-TAAAATTACCAAAATACCCCTAGT
* * *
46917080 TTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTATCGAAATACCACTAGT
1 TTGTAAAATTACCAAAATACCCCT-GTTTGTAAAATTACCAAAATACCCCTAGT
* * **
46917134 TTGTGAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCT-GAT
1 TTGTAAAATTACCAAAATACCC-CTGTTTGTAAAATTACCAAAATACCCCTAG-T
**
46917188 TTACAAAATTA-CAGAAATACCC
1 TTGTAAAATTACCA-AAATACCC
46917210 TTGACTTTCT
Statistics
Matches: 108, Mismatches: 18, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
53 2 0.02
54 102 0.94
55 4 0.04
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.29
Consensus pattern (53 bp):
TTGTAAAATTACCAAAATACCCCTGTTTGTAAAATTACCAAAATACCCCTAGT
Found at i:46917196 original size:81 final size:81
Alignment explanation
Indices: 46917058--46917208 Score: 218
Period size: 81 Copynumber: 1.9 Consensus size: 81
46917048 CTGTAGGATA
* **
46917058 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTATC-GA
1 AAATTACCAAAATACCCCTAATTTGTAAAATTACCAAAATACCCCTAGTTTACAAAATTA-CAGA
46917122 AATACCACTAGTTTGTG
65 AATACCACTAGTTTGTG
*
46917139 AAATTACCGAAATA-CCCTCAATTTGTAAAATTACCAAAATACCCCT-GATTTACAAAATTACAG
1 AAATTACCAAAATACCCCT-AATTTGTAAAATTACCAAAATACCCCTAG-TTTACAAAATTACAG
46917202 AAATACC
64 AAATACC
46917209 CTTGACTTTC
Statistics
Matches: 63, Mismatches: 4, Indels: 6
0.86 0.05 0.08
Matches are distributed among these distances:
80 6 0.10
81 57 0.90
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.28
Consensus pattern (81 bp):
AAATTACCAAAATACCCCTAATTTGTAAAATTACCAAAATACCCCTAGTTTACAAAATTACAGAA
ATACCACTAGTTTGTG
Found at i:46917390 original size:26 final size:27
Alignment explanation
Indices: 46917329--46917399 Score: 67
Period size: 26 Copynumber: 2.7 Consensus size: 27
46917319 CCTAATAGGA
46917329 AAAAAGACTGTAA-AGCCCCTGTAGGGT
1 AAAAAGAC-GTAATAGCCCCTGTAGGGT
** * *
46917356 AAAGTGACGTAATA-CCCTTGTATGGT
1 AAAAAGACGTAATAGCCCCTGTAGGGT
46917382 AAAAAGACG-AATATGCCC
1 AAAAAGACGTAATA-GCCC
46917400 TTATGTTCCG
Statistics
Matches: 35, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
25 4 0.11
26 21 0.60
27 10 0.29
ACGTcount: A:0.38, C:0.18, G:0.23, T:0.21
Consensus pattern (27 bp):
AAAAAGACGTAATAGCCCCTGTAGGGT
Found at i:46918236 original size:25 final size:24
Alignment explanation
Indices: 46918198--46918267 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 24
46918188 AGGAAGTGCT
*
46918198 AAAAGGGCTCTGCCCCAGTTTACC
1 AAAAGGGCTTTGCCCCAGTTTACC
*
46918222 GAAAAGGGCTTTGCCCCAGTTTATC
1 -AAAAGGGCTTTGCCCCAGTTTACC
*
46918247 AGAAAGGGCTTTGCCCTAGTT
1 A-AAAGGGCTTTGCCCCAGTT
46918268 ATTATAGGAG
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
24 1 0.02
25 40 0.98
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTACC
Found at i:46918462 original size:42 final size:42
Alignment explanation
Indices: 46918415--46918548 Score: 250
Period size: 42 Copynumber: 3.2 Consensus size: 42
46918405 TAGTCTCCCC
46918415 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
46918457 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
* *
46918499 AAATGGTCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
46918541 AAATGGGC
1 AAATGGGC
46918549 CTAAGGGCCA
Statistics
Matches: 89, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 89 1.00
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.34
Consensus pattern (42 bp):
AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
Found at i:46918607 original size:31 final size:31
Alignment explanation
Indices: 46918572--46918686 Score: 178
Period size: 31 Copynumber: 3.7 Consensus size: 31
46918562 CGTTTACAGT
*
46918572 AAAGGTTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
46918603 AAAGGCTTCGACCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* *
46918634 AAAGGCTTTGGCCCAGTGATATGATTTATGG
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
46918665 AAAGGCTTCAGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
46918687 TCAAGACTAA
Statistics
Matches: 77, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
30 5 0.06
31 72 0.94
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.30
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:46920551 original size:47 final size:47
Alignment explanation
Indices: 46920473--46920866 Score: 657
Period size: 47 Copynumber: 8.4 Consensus size: 47
46920463 CCCTTCGGGA
* * * * *
46920473 CTTATCATATTTATACACTTTGACATCCATCACATTGGCCATTAGGC
1 CTTATCACATATACACACTTTCACATTCATCACATTGGCCATTAGGC
* *
46920520 CTTATCACATATACACACTTTCACATTCATCACATTGGCCACTCGGC
1 CTTATCACATATACACACTTTCACATTCATCACATTGGCCATTAGGC
*
46920567 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCA-GC
1 CTTATCACATATACACACTTTCACATTCATCACATTGGCCATT-AGGC
* *
46920614 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATACACACTTTCACATTCATCACATTGGCCATTAGGC
46920661 CTTATCACATATACACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATACACACTTTCACATTCATCACATTGGCCATTAGGC
46920708 CTTATCACATATACACACTTTCACATTCATCACATTGGCCATTTA-GC
1 CTTATCACATATACACACTTTCACATTCATCACATTGGCCA-TTAGGC
46920755 CTTATCACATATACACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATACACACTTTCACATTCATCACATTGGCCATTAGGC
*
46920802 CTTATCACATATACACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATACACACTTTCACATTCATCACATTGGCCATTAGGC
46920849 CTTATCACATATACACAC
1 CTTATCACATATACACAC
46920867 CTTGTACATC
Statistics
Matches: 329, Mismatches: 14, Indels: 8
0.94 0.04 0.02
Matches are distributed among these distances:
46 4 0.01
47 322 0.98
48 3 0.01
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATACACACTTTCACATTCATCACATTGGCCATTAGGC
Found at i:46920598 original size:25 final size:25
Alignment explanation
Indices: 46920523--46920648 Score: 88
Period size: 25 Copynumber: 5.3 Consensus size: 25
46920513 ATTAGGCCTT
*
46920523 ATCACATATACACACTTTCACATTC
1 ATCACATATAGACACTTTCACATTC
* * * *
46920548 ATCACAT-TGGCCAC--TCGGCCTT-
1 ATCACATATAGACACTTTC-ACATTC
*
46920570 ATCACATATATACACTTTCACATTC
1 ATCACATATAGACACTTTCACATTC
* * *
46920595 ATCACAT-T-GGC-CATTCAGCCTT-
1 ATCACATATAGACACTTTCA-CATTC
*
46920617 ATCACATATATACACTTTCACATTC
1 ATCACATATAGACACTTTCACATTC
46920642 ATCACAT
1 ATCACAT
46920649 CGGCCATTAG
Statistics
Matches: 73, Mismatches: 18, Indels: 20
0.66 0.16 0.18
Matches are distributed among these distances:
22 21 0.29
23 12 0.16
24 12 0.16
25 28 0.38
ACGTcount: A:0.31, C:0.31, G:0.06, T:0.33
Consensus pattern (25 bp):
ATCACATATAGACACTTTCACATTC
Found at i:46924857 original size:40 final size:40
Alignment explanation
Indices: 46924789--46925100 Score: 455
Period size: 40 Copynumber: 7.8 Consensus size: 40
46924779 ATTTTGTCCA
* **
46924789 AGCACGAATG-TCTTTGGGGCTTAGCCCGGATACATCACC
1 AGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACC
46924828 AGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACC
1 AGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACC
* * *
46924868 AGCACGAATGCTCTTCGGAACCTAGTCCGGATATATCACC
1 AGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACC
* * *
46924908 AGCACGAATGCTCTTCGGAACCTAGTCCGGATATATCACC
1 AGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACC
* *
46924948 AGCACGAATGCTCTTCGGGACTTAGCCCGGTTACATCACC
1 AGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACC
* * *
46924988 AGCACGAATGCTCTTCGGAACCTAGTCCGGATATATCACC
1 AGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACC
* *
46925028 AGCACGAATGCTCTTCGGGACTTAACCCGGATACATCACC
1 AGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACC
* *
46925068 AGCACGAATGCTCTTCGGGACTTAGCCTGGATA
1 AGCACGAATGCTCTTCGGAACTTAGCCCGGATA
46925101 TAACATACTG
Statistics
Matches: 249, Mismatches: 23, Indels: 1
0.91 0.08 0.00
Matches are distributed among these distances:
39 10 0.04
40 239 0.96
ACGTcount: A:0.26, C:0.30, G:0.22, T:0.22
Consensus pattern (40 bp):
AGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACC
Found at i:46924938 original size:120 final size:120
Alignment explanation
Indices: 46924813--46925100 Score: 504
Period size: 120 Copynumber: 2.4 Consensus size: 120
46924803 TGGGGCTTAG
*
46924813 CCCGGATACATCACCAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACCAGCACGAATG
1 CCCGGATACATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACCAGCACGAATG
*
46924878 CTCTTCGGAACCTAGTCCGGATATATCACCAGCACGAATGCTCTTCGGAACCTAG
66 CTCTTCGGAACCTAGTCCGGATATATCACCAGCACGAATGCTCTTCGGAACCTAA
* * *
46924933 TCCGGATATATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGTTACATCACCAGCACGAATG
1 CCCGGATACATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACCAGCACGAATG
* *
46924998 CTCTTCGGAACCTAGTCCGGATATATCACCAGCACGAATGCTCTTCGGGACTTAA
66 CTCTTCGGAACCTAGTCCGGATATATCACCAGCACGAATGCTCTTCGGAACCTAA
*
46925053 CCCGGATACATCACCAGCACGAATGCTCTTCGGGACTTAGCCTGGATA
1 CCCGGATACATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
46925101 TAACATACTG
Statistics
Matches: 157, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
120 157 1.00
ACGTcount: A:0.26, C:0.31, G:0.21, T:0.22
Consensus pattern (120 bp):
CCCGGATACATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACCAGCACGAATG
CTCTTCGGAACCTAGTCCGGATATATCACCAGCACGAATGCTCTTCGGAACCTAA
Found at i:46927019 original size:47 final size:47
Alignment explanation
Indices: 46926950--46927343 Score: 664
Period size: 47 Copynumber: 8.4 Consensus size: 47
46926940 CCCTTCGGGA
* * * *
46926950 CTTATCACATTTATACACTTTCATATCCATCACATTGGCCATTAGGC
1 CTTATCACATATACACACTTTCACATTCATCACATTGGCCATTAGGC
* *
46926997 CTTATCACATATACACACTTTCACATTCATCACATTGGCCACTCGGC
1 CTTATCACATATACACACTTTCACATTCATCACATTGGCCATTAGGC
*
46927044 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCA-GC
1 CTTATCACATATACACACTTTCACATTCATCACATTGGCCATT-AGGC
* *
46927091 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATACACACTTTCACATTCATCACATTGGCCATTAGGC
*
46927138 CTTATCACATATACACACTTTCACATTCATCACATTGGTCATTAGGC
1 CTTATCACATATACACACTTTCACATTCATCACATTGGCCATTAGGC
*
46927185 CTTATCACATATACACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATACACACTTTCACATTCATCACATTGGCCATTAGGC
46927232 CTTATCACATATACACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATACACACTTTCACATTCATCACATTGGCCATTAGGC
*
46927279 CTTATCACATATACACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATACACACTTTCACATTCATCACATTGGCCATTAGGC
46927326 CTTATCACATATACACAC
1 CTTATCACATATACACAC
46927344 CTTGTACATC
Statistics
Matches: 328, Mismatches: 17, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
46 1 0.00
47 327 1.00
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATACACACTTTCACATTCATCACATTGGCCATTAGGC
Found at i:46927075 original size:25 final size:25
Alignment explanation
Indices: 46927000--46927125 Score: 88
Period size: 25 Copynumber: 5.3 Consensus size: 25
46926990 ATTAGGCCTT
*
46927000 ATCACATATACACACTTTCACATTC
1 ATCACATATAGACACTTTCACATTC
* * * *
46927025 ATCACAT-TGGCCAC--TCGGCCTT-
1 ATCACATATAGACACTTTC-ACATTC
*
46927047 ATCACATATATACACTTTCACATTC
1 ATCACATATAGACACTTTCACATTC
* * *
46927072 ATCACAT-T-GGC-CATTCAGCCTT-
1 ATCACATATAGACACTTTCA-CATTC
*
46927094 ATCACATATATACACTTTCACATTC
1 ATCACATATAGACACTTTCACATTC
46927119 ATCACAT
1 ATCACAT
46927126 CGGCCATTAG
Statistics
Matches: 73, Mismatches: 18, Indels: 20
0.66 0.16 0.18
Matches are distributed among these distances:
22 21 0.29
23 12 0.16
24 12 0.16
25 28 0.38
ACGTcount: A:0.31, C:0.31, G:0.06, T:0.33
Consensus pattern (25 bp):
ATCACATATAGACACTTTCACATTC
Found at i:46927241 original size:22 final size:22
Alignment explanation
Indices: 46927213--46927335 Score: 65
Period size: 22 Copynumber: 5.3 Consensus size: 22
46927203 TTTCACATTC
46927213 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
46927235 ATCACATAT-ACACACTTTC-ACATT
1 ATCACAT-TGGC-CA--TTCGGCCTT
*
46927259 CATCACATTGGCCATTAGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * *
46927282 ATCACATAT-ACACACTTTC-ACATT
1 ATCACAT-TGGC-CA--TTCGGCCTT
46927306 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
46927329 ATCACAT
1 ATCACAT
46927336 ATACACACCT
Statistics
Matches: 73, Mismatches: 14, Indels: 28
0.63 0.12 0.24
Matches are distributed among these distances:
22 28 0.38
23 12 0.16
24 12 0.16
25 21 0.29
ACGTcount: A:0.28, C:0.31, G:0.10, T:0.32
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:46934602 original size:27 final size:27
Alignment explanation
Indices: 46934571--46934623 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
46934561 GCATCTAATA
*
46934571 CTGATTCT-GTATTGGGCTTAGGCCCAC
1 CTGATTCTAGTAATGGGC-TAGGCCCAC
*
46934598 CTGATTCTATTAATGGGCTAGGCCCA
1 CTGATTCTAGTAATGGGCTAGGCCCA
46934624 ACTGTAACTG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 16 0.70
28 7 0.30
ACGTcount: A:0.19, C:0.25, G:0.25, T:0.32
Consensus pattern (27 bp):
CTGATTCTAGTAATGGGCTAGGCCCAC
Found at i:46938520 original size:27 final size:26
Alignment explanation
Indices: 46938439--46938520 Score: 67
Period size: 27 Copynumber: 3.0 Consensus size: 26
46938429 GCCCAACTGT
* *
46938439 AACTGATATTGAGAATGGGCTAGGCCC
1 AACTGAAATTGA-TATGGGCTAGGCCC
* * *
46938466 AACTGAATTTGATAAGGGCTGAGACCC
1 AACTGAAATTGATATGGGCT-AGGCCC
*
46938493 AAGTGAAATTG-TACTGGGCTAAGGCCC
1 AACTGAAATTGATA-TGGGCT-AGGCCC
46938520 A
1 A
46938521 CAGTCATTGT
Statistics
Matches: 43, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
26 8 0.19
27 35 0.81
ACGTcount: A:0.32, C:0.18, G:0.28, T:0.22
Consensus pattern (26 bp):
AACTGAAATTGATATGGGCTAGGCCC
Found at i:46940981 original size:47 final size:47
Alignment explanation
Indices: 46940903--46941306 Score: 614
Period size: 47 Copynumber: 8.6 Consensus size: 47
46940893 CCCTTCGGGA
* * * * * *
46940903 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
46940950 CCTGTCACATATATACTCTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
46940997 CTCATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
46941044 CTTATCACATATATACACTTTCACATTCATCATATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
46941091 CTTATCACATATATATACACTTTCACATTCATCACATCGTCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
46941140 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
46941189 CTTATCACATATATACACTTTCACAGTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
46941236 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
46941283 CTTATCACATATATACA--TTCACAT
1 CTTATCACATATATACACTTTCACAT
46941307 CACAATTATC
Statistics
Matches: 329, Mismatches: 26, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
45 7 0.02
47 231 0.70
49 91 0.28
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:46941239 original size:192 final size:190
Alignment explanation
Indices: 46940903--46941297 Score: 623
Period size: 192 Copynumber: 2.1 Consensus size: 190
46940893 CCCTTCGGGA
* * * *
46940903 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATAC
* *
46940966 TCTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACAGTCATCACA
* *
46941031 TCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCATATCGGCCATTAGGC
131 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
46941091 CTTATCACATATATATACACTTTCACATTCATCACATCGTCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCAC--ATATAT
* * *
46941156 ACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACAGTCATCA
64 ACACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACAGTCATCA
46941221 CATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
129 CATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
46941283 CTTATCACATATATA
1 CTTATCACATATATA
46941298 CATTCACATC
Statistics
Matches: 188, Mismatches: 15, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
188 10 0.05
189 1 0.01
190 36 0.19
192 141 0.75
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (190 bp):
CTTATCACATATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACAGTCATCACA
TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:46941538 original size:19 final size:19
Alignment explanation
Indices: 46941514--46941557 Score: 79
Period size: 19 Copynumber: 2.3 Consensus size: 19
46941504 ACAATATCAC
46941514 GATTTAGAATTCACGTATG
1 GATTTAGAATTCACGTATG
46941533 GATTTAGAATTCACGTATG
1 GATTTAGAATTCACGTATG
*
46941552 GGTTTA
1 GATTTA
46941558 ATCAATAGCT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.30, C:0.09, G:0.23, T:0.39
Consensus pattern (19 bp):
GATTTAGAATTCACGTATG
Found at i:46944706 original size:40 final size:40
Alignment explanation
Indices: 46944673--46945095 Score: 628
Period size: 40 Copynumber: 10.7 Consensus size: 40
46944663 CCAGCATGAT
* * * *
46944673 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * * * *
46944713 TGCTCTTCGAGG-TTTAGCACGGATATATTACTTGCACGAA
1 TGCTCTTCG-GGACTTAGCCCGGATACATCACTAGCACGAA
* *
46944753 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
46944793 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
46944833 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
46944873 TGCTCTTCGGGACTTAGTCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAG-CCCGGATACATCACTAGCACGAA
*
46944914 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
46944954 TGCTCTTC-GGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
46944993 TGCTCTTCGGGACTTAGCCCGG--ACATCACTAGCA--TA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
46945029 TGCTCTTC-GGACTTAGCCCGGGTACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
46945068 TGCTCTTCGGGACTTAGCCCGGAT-CATC
1 TGCTCTTCGGGACTTAGCCCGGATACATC
46945096 GTCGAGACCT
Statistics
Matches: 349, Mismatches: 25, Indels: 19
0.89 0.06 0.05
Matches are distributed among these distances:
35 13 0.04
36 9 0.03
37 12 0.03
38 12 0.03
39 52 0.15
40 210 0.60
41 41 0.12
ACGTcount: A:0.24, C:0.29, G:0.22, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:46947393 original size:47 final size:47
Alignment explanation
Indices: 46947315--46947720 Score: 618
Period size: 47 Copynumber: 8.6 Consensus size: 47
46947305 CCCTTCGGGA
* * * * * *
46947315 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
46947362 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
46947409 CTCATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
46947456 CTTATCACATATAT--ACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
46947501 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
46947550 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
46947599 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
46947646 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
46947695 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
46947721 CACAATTATC
Statistics
Matches: 333, Mismatches: 20, Indels: 12
0.91 0.05 0.03
Matches are distributed among these distances:
45 38 0.11
47 162 0.49
49 133 0.40
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:46947635 original size:96 final size:94
Alignment explanation
Indices: 46947315--46947720 Score: 618
Period size: 96 Copynumber: 4.3 Consensus size: 94
46947305 CCCTTCGGGA
* * * * * * * *
46947315 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
46947380 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
* *
46947409 CTCATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATAT--AC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
46947472 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
46947501 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
* *
46947566 ACACTTTCACATTCATCACATTGGCCATTCGGC
62 ACACTTTCACATTCATCACATCGGCCATTAGGC
46947599 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
46947664 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
46947695 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
46947721 CACAATTATC
Statistics
Matches: 288, Mismatches: 18, Indels: 10
0.91 0.06 0.03
Matches are distributed among these distances:
92 38 0.13
94 97 0.34
96 116 0.40
98 37 0.13
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:46951439 original size:28 final size:27
Alignment explanation
Indices: 46951384--46951458 Score: 84
Period size: 27 Copynumber: 2.8 Consensus size: 27
46951374 AGCATGGCTG
* *
46951384 CCAGA-ACAGATGATGTGACAGAGTCA
1 CCAGATACAGATAATGTGGCAGAGTCA
46951410 CCAGATACAGATAATCGTGGCAGA-TCCA
1 CCAGATACAGATAAT-GTGGCAGAGT-CA
46951438 CCAGAT-CAGATAATTGTGGCA
1 CCAGATACAGATAA-TGTGGCA
46951459 TAGCCAGCAA
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
26 5 0.12
27 22 0.51
28 16 0.37
ACGTcount: A:0.36, C:0.21, G:0.24, T:0.19
Consensus pattern (27 bp):
CCAGATACAGATAATGTGGCAGAGTCA
Found at i:46951616 original size:26 final size:28
Alignment explanation
Indices: 46951587--46951646 Score: 74
Period size: 27 Copynumber: 2.2 Consensus size: 28
46951577 GGGTATAATG
*
46951587 GTAATTTTGCAC-C-TAGGGGTATATC-A
1 GTAATTTTCCACACATAGGGGTAT-TCAA
46951613 GTAA-TTTCCACACATAGGGGTATTCAA
1 GTAATTTTCCACACATAGGGGTATTCAA
46951640 GTAATTT
1 GTAATTT
46951647 CACTATTATT
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
25 6 0.21
26 7 0.24
27 14 0.48
28 2 0.07
ACGTcount: A:0.30, C:0.15, G:0.20, T:0.35
Consensus pattern (28 bp):
GTAATTTTCCACACATAGGGGTATTCAA
Found at i:46951895 original size:8 final size:8
Alignment explanation
Indices: 46951882--46951906 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
46951872 TCTCAAAATA
46951882 TCAGCTTT
1 TCAGCTTT
46951890 TCAGCTTT
1 TCAGCTTT
46951898 TCAGCTTT
1 TCAGCTTT
46951906 T
1 T
46951907 TGGCTTTTAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.12, C:0.24, G:0.12, T:0.52
Consensus pattern (8 bp):
TCAGCTTT
Found at i:46954220 original size:27 final size:26
Alignment explanation
Indices: 46954181--46954232 Score: 77
Period size: 27 Copynumber: 2.0 Consensus size: 26
46954171 CCCTCGGTTT
* *
46954181 GGAAAATGACCGTTATGCCCCTATAG
1 GGAAAATGACCGTAATACCCCTATAG
46954207 GGAAAATTGACCGTAATACCCCTATA
1 GGAAAA-TGACCGTAATACCCCTATA
46954233 TGATAGAATG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 6 0.26
27 17 0.74
ACGTcount: A:0.35, C:0.23, G:0.19, T:0.23
Consensus pattern (26 bp):
GGAAAATGACCGTAATACCCCTATAG
Found at i:46957963 original size:160 final size:161
Alignment explanation
Indices: 46957699--46958124 Score: 732
Period size: 160 Copynumber: 2.7 Consensus size: 161
46957689 CAGCACGTAC
*
46957699 GCTCTTCGGGACTTAGCCCTGATATAACTCCAGCACGAATGCTCTTCGAGACTTAGCCCGGATAT
1 GCTCTTCGGGACTTAGCCCTGATATAACTCCAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
*
46957764 AACT-CTAGCACGAATACTCTTCGAGACTTAGCCCGGATATAACACCAGCACGTATGCTCTTCGG
66 AACTACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATATAACACCAGCACGTATGCTCTTCGG
*
46957828 GACTTAACCCGGATATATCACTAGCGCGAAT
131 GACTTAACCCAGATATATCACTAGCGCGAAT
**
46957859 GCTCTTCGGGACTTAGCCCTGATATAACTCCAGCACGAATGCTCTTCGGGACTTAGCCCTCATAT
1 GCTCTTCGGGACTTAGCCCTGATATAACTCCAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
46957924 AACTAC-AGCACGAATGCTCTTCGAGACTTAGCCCGGATATAACACCAGCACGTATGCTCTTCGG
66 AACTACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATATAACACCAGCACGTATGCTCTTCGG
46957988 GACTTAACCCAGATATATCACTAGCGCGAAT
131 GACTTAACCCAGATATATCACTAGCGCGAAT
* * * *
46958019 GCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
1 GCTCTTCGGGACTTAGCCCTGATATAACTCCAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
* *
46958084 ATC-ACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
66 AACTACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATATA
46958125 TCATACTGAA
Statistics
Matches: 251, Mismatches: 13, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
159 2 0.01
160 248 0.99
161 1 0.00
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.25
Consensus pattern (161 bp):
GCTCTTCGGGACTTAGCCCTGATATAACTCCAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
AACTACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATATAACACCAGCACGTATGCTCTTCGG
GACTTAACCCAGATATATCACTAGCGCGAAT
Found at i:46958127 original size:40 final size:40
Alignment explanation
Indices: 46957690--46958124 Score: 602
Period size: 40 Copynumber: 10.9 Consensus size: 40
46957680 TCCTGTAACC
* * * * *
46957690 AGCACGTACGCTCTTCGGGACTTAGCCCTGATATAACTCC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACT
* *
46957730 AGCACGAATGCTCTTCGAGACTTAGCCCGGATATAACTCT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACT
* * *
46957770 AGCACGAATACTCTTCGAGACTTAGCCCGGATATAACACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACT
* * *
46957810 AGCACGTATGCTCTTCGGGACTTAACCCGGATATATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACT
* * * *
46957850 AGCGCGAATGCTCTTCGGGACTTAGCCCTGATATAACTCC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACT
**
46957890 AGCACGAATGCTCTTCGGGACTTAGCCCTCATATAACTAC-
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATAAC-ACT
* *
46957930 AGCACGAATGCTCTTCGAGACTTAGCCCGGATATAACACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACT
* * * *
46957970 AGCACGTATGCTCTTCGGGACTTAACCCAGATATATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACT
* *
46958010 AGCGCGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACT
*
46958050 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACT
46958090 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
46958125 TCATACTGAA
Statistics
Matches: 355, Mismatches: 38, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
39 2 0.01
40 352 0.99
41 1 0.00
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
AGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACT
Found at i:46959618 original size:46 final size:46
Alignment explanation
Indices: 46959565--46959655 Score: 112
Period size: 46 Copynumber: 2.0 Consensus size: 46
46959555 TATATATACA
* * *
46959565 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACC-ACATATC
1 CATCTCATACACATCTCACATTAACCATTCGGCTTT-CCTACATATC
* * *
46959611 CATCTCATACGCATTTCGCATTAACCATTCGGCTTTCCTACATAT
1 CATCTCATACACATCTCACATTAACCATTCGGCTTTCCTACATAT
46959656 ATACACATCC
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
45 2 0.05
46 36 0.95
ACGTcount: A:0.26, C:0.31, G:0.08, T:0.35
Consensus pattern (46 bp):
CATCTCATACACATCTCACATTAACCATTCGGCTTTCCTACATATC
Found at i:46960053 original size:23 final size:23
Alignment explanation
Indices: 46959980--46960053 Score: 62
Period size: 23 Copynumber: 3.2 Consensus size: 23
46959970 GGTCTTATCA
46959980 CACAAATGCATGTTCACATTCAT
1 CACAAATGCATGTTCACATTCAT
** ** *
46960003 CACATTTGCCAT-TTGGCCTTAGCA-
1 CACAAATG-CATGTTCACATT--CAT
46960027 CACAAATGCATGTTCACATTCAT
1 CACAAATGCATGTTCACATTCAT
46960050 CACA
1 CACA
46960054 TTTGCCATTC
Statistics
Matches: 36, Mismatches: 10, Indels: 10
0.64 0.18 0.18
Matches are distributed among these distances:
22 2 0.06
23 18 0.50
24 14 0.39
25 2 0.06
ACGTcount: A:0.31, C:0.28, G:0.11, T:0.30
Consensus pattern (23 bp):
CACAAATGCATGTTCACATTCAT
Found at i:46960072 original size:47 final size:47
Alignment explanation
Indices: 46959669--46960070 Score: 615
Period size: 47 Copynumber: 8.6 Consensus size: 47
46959659 CACATCCACG
* **
46959669 TTCATCACATTGGCCATTCTGCCTTATCACATGTATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
* * * *
46959716 TTTATCACATTGGTCATTCGGCCTTATCACATATATGCATGTTCATA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
*
46959763 TTCTTCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
* * *
46959810 TTCATCACATTGGCCATTCGGCCTTATCACAGATATACATGTTCATA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
* *
46959857 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCATA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
*
46959904 TTCATCACATTGGCCATTCGGCCTTATCACACATATACATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
* *
46959951 TTCATCACATTGGCCATTCGGTCTTATCACACAAATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
* * * *
46959998 TTCATCACATTTGCCATTTGGCCTTAGCACACAAATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
*
46960045 TTCATCACATTTGCCATTCGGCCTTA
1 TTCATCACATTGGCCATTCGGCCTTA
46960071 GCTCATGTAT
Statistics
Matches: 328, Mismatches: 27, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 328 1.00
ACGTcount: A:0.26, C:0.27, G:0.12, T:0.35
Consensus pattern (47 bp):
TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
Found at i:46960090 original size:141 final size:141
Alignment explanation
Indices: 46959654--46960101 Score: 626
Period size: 141 Copynumber: 3.2 Consensus size: 141
46959644 TTTCCTACAT
* * * ** *
46959654 ATATACACATCCACGTTCATCACATTGGCCATTCTGCCTTATCACATGTATGCATGTTCACATTT
1 ATATACACATTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
* *
46959719 ATCACATTGGTCATTCGGCCTTATCACATATATGCATGTTCATATTCTTCACATTGGCCATTCGG
66 ATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCATATTCATCACATTGGCCATTCGG
46959784 CCTTATCACAC
131 CCTTATCACAC
* ** * * *
46959795 ATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAGATATACATGTTCATATTC
1 ATATACACATTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
46959860 ATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCATATTCATCACATTGGCCATTCGG
66 ATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCATATTCATCACATTGGCCATTCGG
46959925 CCTTATCACAC
131 CCTTATCACAC
** * *
46959936 ATATACATGTTCACATTCATCACATTGGCCATTCGGTCTTATCACACAAATGCATGTTCACATTC
1 ATATACACATTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
* * * * * * *
46960001 ATCACATTTGCCATTTGGCCTTAGCACACAAATGCATGTTCACATTCATCACATTTGCCATTCGG
66 ATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCATATTCATCACATTGGCCATTCGG
* * *
46960066 CCTTAGCTCAT
131 CCTTATCACAC
* *
46960077 GTATACACATTCACATCCATCACAT
1 ATATACACATTCACATTCATCACAT
46960102 AAAATCCTAA
Statistics
Matches: 274, Mismatches: 33, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
141 274 1.00
ACGTcount: A:0.27, C:0.28, G:0.12, T:0.34
Consensus pattern (141 bp):
ATATACACATTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
ATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCATATTCATCACATTGGCCATTCGG
CCTTATCACAC
Found at i:46963875 original size:40 final size:40
Alignment explanation
Indices: 46963820--46964336 Score: 656
Period size: 40 Copynumber: 12.9 Consensus size: 40
46963810 ATACACATCA
* * *
46963820 CCAGCATGAATGCTCTTCGGGACTTAGCCCTGATATAAGT
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACT
* * * * *
46963860 CCAGCACGAATGCTCTTTGAGACTTAACCCGGATATGACA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACT
* * *
46963900 CCAGCACGTATGCTCTTCAGGACTTAGCCCTGATATAACT
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACT
*
46963940 CCAGCACGAATGCTCTTCGAGACTTAGCCCGGATATAACT
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACT
* * * *
46963980 CTAGCACGAATGCTCTTCGAGACTTAGCCCTGATATAACA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACT
* * * * *
46964020 CCAGCACGTATGCTCTTCGGGACTTAACCCGAATATATCA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACT
* * *
46964060 CTAGCGCGAATGCTCTTCGGGACTTAGCCCTGATATAACT
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACT
*
46964100 CCAGCACGAATGCTCTTCGAGACTTAGCCCGGATATAACT
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACT
* * * *
46964140 CTAGCATGAATGCTCTTCGAGACTTAGCCCGGATATAACA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACT
* * * *
46964180 CCAGCACGTATGCTCTTCGGGACTTAACCCGGATATATCA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACT
* * * * *
46964220 CTAGCGCTAATGCTCTTCGGGACTTAGCCCGGATATATCA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACT
* * *
46964260 CTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACT
*
46964300 CTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
46964337 TCATACTGAA
Statistics
Matches: 419, Mismatches: 58, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 419 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACT
Found at i:46964091 original size:160 final size:160
Alignment explanation
Indices: 46963822--46964336 Score: 798
Period size: 160 Copynumber: 3.2 Consensus size: 160
46963812 ACACATCACC
* * * ** * * *
46963822 AGCATGAATGCTCTTCGGGACTTAGCCCTGATATAAGTCCAGCACGAATGCTCTTTGAGACTTAA
1 AGCACGAATGCTCTTCGAGACTTAGCCCGGATATAACACCAGCACGTATGCTCTTCGGGACTTAA
* * * *
46963887 CCCGGATATGA-CACCAGCACGTATGCTCTTCAGGACTTAGCCCTGATATAACTCCAGCACGAAT
66 CCCGGATAT-ATCACTAGCGCGAATGCTCTTCGGGACTTAGCCCTGATATAACTCCAGCACGAAT
46963951 GCTCTTCGAGACTTAGCCCGGATATAACTCT
130 GCTCTTCGAGACTTAGCCCGGATATAACTCT
*
46963982 AGCACGAATGCTCTTCGAGACTTAGCCCTGATATAACACCAGCACGTATGCTCTTCGGGACTTAA
1 AGCACGAATGCTCTTCGAGACTTAGCCCGGATATAACACCAGCACGTATGCTCTTCGGGACTTAA
*
46964047 CCCGAATATATCACTAGCGCGAATGCTCTTCGGGACTTAGCCCTGATATAACTCCAGCACGAATG
66 CCCGGATATATCACTAGCGCGAATGCTCTTCGGGACTTAGCCCTGATATAACTCCAGCACGAATG
46964112 CTCTTCGAGACTTAGCCCGGATATAACTCT
131 CTCTTCGAGACTTAGCCCGGATATAACTCT
*
46964142 AGCATGAATGCTCTTCGAGACTTAGCCCGGATATAACACCAGCACGTATGCTCTTCGGGACTTAA
1 AGCACGAATGCTCTTCGAGACTTAGCCCGGATATAACACCAGCACGTATGCTCTTCGGGACTTAA
* * * * *
46964207 CCCGGATATATCACTAGCGCTAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
66 CCCGGATATATCACTAGCGCGAATGCTCTTCGGGACTTAGCCCTGATATAACTCCAGCACGAATG
* * *
46964272 CTCTTCGGGACTTAGCCCGGATATATCACT
131 CTCTTCGAGACTTAGCCCGGATATAACTCT
*
46964302 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
1 AGCACGAATGCTCTTCGAGACTTAGCCCGGATATA
46964337 TCATACTGAA
Statistics
Matches: 329, Mismatches: 25, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
159 1 0.00
160 328 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (160 bp):
AGCACGAATGCTCTTCGAGACTTAGCCCGGATATAACACCAGCACGTATGCTCTTCGGGACTTAA
CCCGGATATATCACTAGCGCGAATGCTCTTCGGGACTTAGCCCTGATATAACTCCAGCACGAATG
CTCTTCGAGACTTAGCCCGGATATAACTCT
Found at i:46965865 original size:46 final size:46
Alignment explanation
Indices: 46965778--46965865 Score: 122
Period size: 46 Copynumber: 1.9 Consensus size: 46
46965768 TATATATACA
* * *
46965778 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACAAATC
1 CATCTCATACATATCTCACATTAACCATTCGACTTTACCACAAATC
* * *
46965824 CATCTCATACATATTTCGCATTAACCATTCGACTTTCCCACA
1 CATCTCATACATATCTCACATTAACCATTCGACTTTACCACA
46965866 TATATACACA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
46 36 1.00
ACGTcount: A:0.30, C:0.32, G:0.06, T:0.33
Consensus pattern (46 bp):
CATCTCATACATATCTCACATTAACCATTCGACTTTACCACAAATC
Found at i:46966285 original size:47 final size:47
Alignment explanation
Indices: 46965882--46966283 Score: 572
Period size: 47 Copynumber: 8.6 Consensus size: 47
46965872 CACATCCACG
* **
46965882 TTCATCACATTGGCCATTCTGCCTTATCACATGTATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
* * * * * *
46965929 TTTATAACATTGGTCATTTGGCCTTATCACATATATGCATGTTCATA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
*
46965976 TTCTTCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
* * *
46966023 TTCATCACATTGGCCATTCGGCCTTATCACAGATATACATGTTCATA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
* *
46966070 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCATA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
*
46966117 TTCATCACATTGGCCATTCGGCCTTATCACACATATACATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
* * *
46966164 TTCATCATATTGGCCATTCGGTCTTATCACACAAATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
* * *
46966211 TTCATCACATTTGCCATTTGGCCTTAGCACACA-AGTGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATA-TGCATGTTCACA
* *
46966258 TTCATCACATTTGCCTTTCGGCCTTA
1 TTCATCACATTGGCCATTCGGCCTTA
46966284 GCTCATGTAT
Statistics
Matches: 320, Mismatches: 34, Indels: 2
0.90 0.10 0.01
Matches are distributed among these distances:
46 1 0.00
47 319 1.00
ACGTcount: A:0.25, C:0.26, G:0.13, T:0.36
Consensus pattern (47 bp):
TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
Found at i:46966303 original size:141 final size:141
Alignment explanation
Indices: 46965862--46966314 Score: 593
Period size: 141 Copynumber: 3.2 Consensus size: 141
46965852 TCGACTTTCC
* * * * **
46965862 CACATATATACACATCCACGTTCATCACATTGGCCATTCTGCCTTATCACATGTATGCATGTTCA
1 CACACATATACACATTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCA
* * * *
46965927 CATTTATAACATTGGTCATTTGGCCTTATCACATATATGCATGTTCATATTCTTCACATTGGCCA
66 CATTCATCACATTGGCCATTTGGCCTTATCACATATATGCATGTTCATATTCATCACATTGGCCA
46965992 TTCGGCCTTAT
131 TTCGGCCTTAT
* ** * *
46966003 CACACATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAGATATACATGTTCA
1 CACACATATACACATTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCA
* *
46966068 TATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCATATTCATCACATTGGCCA
66 CATTCATCACATTGGCCATTTGGCCTTATCACATATATGCATGTTCATATTCATCACATTGGCCA
46966133 TTCGGCCTTAT
131 TTCGGCCTTAT
** * * *
46966144 CACACATATACATGTTCACATTCATCATATTGGCCATTCGGTCTTATCACACAAATGCATGTTCA
1 CACACATATACACATTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCA
* * * * *
46966209 CATTCATCACATTTGCCATTTGGCCTTAGCACACA-AGTGCATGTTCACATTCATCACATTTGCC
66 CATTCATCACATTGGCCATTTGGCCTTATCACATATA-TGCATGTTCATATTCATCACATTGGCC
* *
46966273 TTTCGGCCTTAG
130 ATTCGGCCTTAT
* ** *
46966285 CTCATGTATACACATTCACATCCATCACAT
1 CACACATATACACATTCACATTCATCACAT
46966315 AAAATCCTAA
Statistics
Matches: 273, Mismatches: 38, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
140 1 0.00
141 272 1.00
ACGTcount: A:0.26, C:0.27, G:0.12, T:0.34
Consensus pattern (141 bp):
CACACATATACACATTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCA
CATTCATCACATTGGCCATTTGGCCTTATCACATATATGCATGTTCATATTCATCACATTGGCCA
TTCGGCCTTAT
Found at i:46972990 original size:14 final size:14
Alignment explanation
Indices: 46972971--46972998 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
46972961 TTGTAGCCCT
46972971 TTTTAATATGTACA
1 TTTTAATATGTACA
46972985 TTTTAATATGTACA
1 TTTTAATATGTACA
46972999 AAATAACCCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.07, G:0.07, T:0.50
Consensus pattern (14 bp):
TTTTAATATGTACA
Found at i:46976053 original size:46 final size:46
Alignment explanation
Indices: 46975949--46976072 Score: 151
Period size: 46 Copynumber: 2.7 Consensus size: 46
46975939 GGTCATTTGT
* *
46975949 GAGAGCTAGTGTAAGACCATGTCTGGGACACGGCACCAGCATTGAGAC
1 GAGAGCTAGTGTAAGA-CATGTCTGGGACA-TGCACCAGCATCGAGAC
* * * *
46975997 GAGTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGAC
1 GAGAGCTAGTGTAAGACATGTCTGGGACATGCACCAGCATCGAGAC
*
46976043 GTA-AGCTAGTGTAAGACATGTGTGGGACAT
1 G-AGAGCTAGTGTAAGACATGTCTGGGACAT
46976073 ACGTTGGCTA
Statistics
Matches: 67, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
46 38 0.57
47 14 0.21
48 15 0.22
ACGTcount: A:0.27, C:0.19, G:0.32, T:0.21
Consensus pattern (46 bp):
GAGAGCTAGTGTAAGACATGTCTGGGACATGCACCAGCATCGAGAC
Found at i:46982946 original size:46 final size:46
Alignment explanation
Indices: 46982841--46983052 Score: 198
Period size: 47 Copynumber: 4.5 Consensus size: 46
46982831 TGTGAGAGCT
* * * * * *
46982841 AGTGTAAGACTATGTCTGGGACACGACATCTGCATTAAGATG-AGTGCT
1 AGTGTAAGACCATGTCTGGGACATG-CATCGGC-TTGAGATGTA-AGCC
*
46982889 AGTGTAAGA-CATGTCTGGGACATGCATCGGCCTTGAGACGTAAGCC
1 AGTGTAAGACCATGTCTGGGACATGCATCGG-CTTGAGATGTAAGCC
* * * *
46982935 AGTGTAAGA-CATGTCTGGGACATACGTTGGCTATGAGATG-ATAGTC
1 AGTGTAAGACCATGTCTGGGACATGCATCGGCT-TGAGATGTA-AGCC
* * *
46982981 AGTGTAAGACCATGTCTGGGACATGGCTTCGACTTGAGATATAAGCC
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGGCTTGAGATGTAAGCC
*
46983028 AGTGTAAGACCGTGTCTGGGACATG
1 AGTGTAAGACCATGTCTGGGACATG
46983053 GCATTGACAC
Statistics
Matches: 138, Mismatches: 19, Indels: 16
0.80 0.11 0.09
Matches are distributed among these distances:
45 3 0.02
46 59 0.43
47 61 0.44
48 15 0.11
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.25
Consensus pattern (46 bp):
AGTGTAAGACCATGTCTGGGACATGCATCGGCTTGAGATGTAAGCC
Done.