Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 141 of 362
Found at i:46984011 original size:21 final size:22
Alignment explanation
Indices: 46983951--46984012 Score: 99
Period size: 22 Copynumber: 2.9 Consensus size: 22
46983941 TGGGTGGAGG
46983951 ACACGGGCGTGTTGCCCCTCCC
1 ACACGGGCGTGTTGCCCCTCCC
*
46983973 ACACGGGCATGTTGCCCCTCCC
1 ACACGGGCGTGTTGCCCCTCCC
*
46983995 ACATGGGCGTG-TGCCCCT
1 ACACGGGCGTGTTGCCCCT
46984013 GTGCCTCGTA
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
21 7 0.19
22 30 0.81
ACGTcount: A:0.11, C:0.42, G:0.27, T:0.19
Consensus pattern (22 bp):
ACACGGGCGTGTTGCCCCTCCC
Found at i:46985570 original size:39 final size:39
Alignment explanation
Indices: 46985526--46985604 Score: 149
Period size: 39 Copynumber: 2.0 Consensus size: 39
46985516 TTTTTCTCCA
*
46985526 AAACATTGATCTCTAATTCTTTTTCTTAAATCCAATTGT
1 AAACATTAATCTCTAATTCTTTTTCTTAAATCCAATTGT
46985565 AAACATTAATCTCTAATTCTTTTTCTTAAATCCAATTGT
1 AAACATTAATCTCTAATTCTTTTTCTTAAATCCAATTGT
46985604 A
1 A
46985605 TCTCTTCTTC
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.33, C:0.18, G:0.04, T:0.46
Consensus pattern (39 bp):
AAACATTAATCTCTAATTCTTTTTCTTAAATCCAATTGT
Found at i:46987405 original size:53 final size:54
Alignment explanation
Indices: 46987284--46987530 Score: 260
Period size: 55 Copynumber: 4.6 Consensus size: 54
46987274 ACCTTACCGT
* * *
46987284 TGCCATGACTT-ATCATGGTCTTACTTGGTATCC-T---TT-TGAAACTTACCAT
1 TGCCATGCCTTGA-CATGGTCTTACATGGTATCCTTGCCTTATGAAACTTACCAA
* *
46987333 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG-AACTCACCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAACTTACCAA
* * * *
46987386 TGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAACTTATCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCCTTAT-GAAACTTACCAA
* * *
46987441 TGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTA-GAAACCTTACCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA-CTTACCAA
* *
46987495 TTGCCATGCCTTGGCATGGTCTTACACGGTATCCTT
1 -TGCCATGCCTTGACATGGTCTTACATGGTATCCTT
46987531 AAACCCTAAT
Statistics
Matches: 165, Mismatches: 21, Indels: 18
0.81 0.10 0.09
Matches are distributed among these distances:
49 29 0.18
50 2 0.01
52 2 0.01
53 49 0.30
54 10 0.06
55 71 0.43
56 2 0.01
ACGTcount: A:0.21, C:0.25, G:0.17, T:0.36
Consensus pattern (54 bp):
TGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAACTTACCAA
Found at i:46987467 original size:108 final size:110
Alignment explanation
Indices: 46987323--46987520 Score: 321
Period size: 108 Copynumber: 1.8 Consensus size: 110
46987313 ATCCTTTTGA
* *
46987323 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTA-GAAACCTCACCAA
46987386 -TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
65 TTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* * *
46987431 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
46987496 TGCCATGCCTTGGCATGGTCTTACA
66 TGCCATGCCTTGGCATGGTCTTACA
46987521 CGGTATCCTT
Statistics
Matches: 82, Mismatches: 5, Indels: 4
0.90 0.05 0.04
Matches are distributed among these distances:
107 1 0.01
108 49 0.60
109 7 0.09
110 25 0.30
ACGTcount: A:0.23, C:0.26, G:0.17, T:0.34
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:46992703 original size:24 final size:26
Alignment explanation
Indices: 46992676--46992733 Score: 93
Period size: 27 Copynumber: 2.3 Consensus size: 26
46992666 GCTCTCTCAA
46992676 CTAGGATAACA-AAC-TCTTTTATTT
1 CTAGGATAACAGAACATCTTTTATTT
46992700 CTAGGATAACAGAACAATCTTTTATTT
1 CTAGGATAACAGAAC-ATCTTTTATTT
46992727 CTAGGAT
1 CTAGGAT
46992734 TGGATATCAT
Statistics
Matches: 31, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
24 11 0.35
25 3 0.10
27 17 0.55
ACGTcount: A:0.34, C:0.16, G:0.12, T:0.38
Consensus pattern (26 bp):
CTAGGATAACAGAACATCTTTTATTT
Found at i:46994687 original size:16 final size:16
Alignment explanation
Indices: 46994668--46994698 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
46994658 CTTCTTCACT
46994668 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
46994684 TACTTACTTACTTAA
1 TACTCACTTACTTAA
46994699 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:46994704 original size:20 final size:20
Alignment explanation
Indices: 46994665--46994704 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
46994655 AAACTTCTTC
* *
46994665 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
46994685 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
46994705 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:46998208 original size:20 final size:20
Alignment explanation
Indices: 46998183--46998246 Score: 110
Period size: 20 Copynumber: 3.2 Consensus size: 20
46998173 TGAGGGGCAG
46998183 GGGCGTGTCCCCAAGCACAC
1 GGGCGTGTCCCCAAGCACAC
* *
46998203 GGGCGTGTCCCCAAGCCCAT
1 GGGCGTGTCCCCAAGCACAC
46998223 GGGCGTGTCCCCAAGCACAC
1 GGGCGTGTCCCCAAGCACAC
46998243 GGGC
1 GGGC
46998247 ATGTGCTTTG
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 40 1.00
ACGTcount: A:0.17, C:0.39, G:0.33, T:0.11
Consensus pattern (20 bp):
GGGCGTGTCCCCAAGCACAC
Found at i:47001906 original size:40 final size:40
Alignment explanation
Indices: 47001862--47002089 Score: 361
Period size: 40 Copynumber: 5.7 Consensus size: 40
47001852 GCTACTTGCT
47001862 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
47001902 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
47001942 CAAATGCCTTCAGGACTTAGCCCGGTTATAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
47001982 CAAATGCCTTCGGGACTTAGCCTGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
47002022 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
*
47002061 CAAATGCCTTTGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
47002090 CATCCGAATA
Statistics
Matches: 173, Mismatches: 12, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
38 1 0.01
39 32 0.18
40 139 0.80
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:47009189 original size:34 final size:34
Alignment explanation
Indices: 47009163--47009227 Score: 112
Period size: 34 Copynumber: 1.9 Consensus size: 34
47009153 GTATCAGTTA
*
47009163 GGGCCTTAGCCCAATACAGTATCAGTAACAGTGT
1 GGGCCTTAGCCCAATACAGTAACAGTAACAGTGT
*
47009197 GGGCCTTAGCCCAATTCAGTAACAGTAACAG
1 GGGCCTTAGCCCAATACAGTAACAGTAACAG
47009228 AAATGTAATT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.31, C:0.25, G:0.23, T:0.22
Consensus pattern (34 bp):
GGGCCTTAGCCCAATACAGTAACAGTAACAGTGT
Found at i:47014866 original size:22 final size:22
Alignment explanation
Indices: 47014835--47014972 Score: 95
Period size: 22 Copynumber: 6.1 Consensus size: 22
47014825 CCTGAGCTGA
*
47014835 TGAACAGTAAGCTTTAATGAGC
1 TGAACAGTAAGCTCTAATGAGC
*
47014857 TGAA-AGGTAAGCTCT-ATCAAGC
1 TGAACA-GTAAGCTCTAAT-GAGC
*
47014879 TGAACAGTAAGCTCTATTGAGC
1 TGAACAGTAAGCTCTAATGAGC
* * *
47014901 TGAACAATCAGCTC-ATACGAGC
1 TGAACAGTAAGCTCTA-ATGAGC
* *
47014923 T-AAAACGATAAGCTCCAATGAGC
1 TGAACA-G-TAAGCTCTAATGAGC
* *
47014946 TGAAAATAGTAAGCTCTTATGAGC
1 TG--AACAGTAAGCTCTAATGAGC
47014970 TGA
1 TGA
47014973 TATATCGGTA
Statistics
Matches: 90, Mismatches: 15, Indels: 22
0.71 0.12 0.17
Matches are distributed among these distances:
21 7 0.08
22 49 0.54
23 14 0.16
24 16 0.18
25 1 0.01
26 3 0.03
ACGTcount: A:0.37, C:0.18, G:0.21, T:0.24
Consensus pattern (22 bp):
TGAACAGTAAGCTCTAATGAGC
Found at i:47018132 original size:24 final size:24
Alignment explanation
Indices: 47018100--47018154 Score: 83
Period size: 24 Copynumber: 2.3 Consensus size: 24
47018090 ACACCTTCAT
*
47018100 ATACATATACACATGAACACATAC
1 ATACATATACACATAAACACATAC
* *
47018124 ATACTTATACACATAAACACATAT
1 ATACATATACACATAAACACATAC
47018148 ATACATA
1 ATACATA
47018155 CCTTCCACAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.51, C:0.22, G:0.02, T:0.25
Consensus pattern (24 bp):
ATACATATACACATAAACACATAC
Found at i:47027486 original size:11 final size:11
Alignment explanation
Indices: 47027470--47027498 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
47027460 AATTTTGAGG
47027470 TTTTAAAATTA
1 TTTTAAAATTA
47027481 TTTTAAAATTA
1 TTTTAAAATTA
47027492 TTTTAAA
1 TTTTAAA
47027499 TGTTTACAGC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (11 bp):
TTTTAAAATTA
Found at i:47036266 original size:28 final size:29
Alignment explanation
Indices: 47036196--47036266 Score: 72
Period size: 28 Copynumber: 2.4 Consensus size: 29
47036186 AAACTTCCCC
* *
47036196 ATAAAAAAGTTTTCTCATAATATAATTAAT
1 ATAAAAATG-TTTCTCATAATATAACTAAT
* * * *
47036226 GTAAACATTTTTCTCATTAT-TAACTAAT
1 ATAAAAATGTTTCTCATAATATAACTAAT
47036254 ATAAAAATGTTTC
1 ATAAAAATGTTTC
47036267 CCAATAAAAA
Statistics
Matches: 32, Mismatches: 9, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
28 17 0.53
29 10 0.31
30 5 0.16
ACGTcount: A:0.44, C:0.10, G:0.04, T:0.42
Consensus pattern (29 bp):
ATAAAAATGTTTCTCATAATATAACTAAT
Found at i:47036900 original size:20 final size:20
Alignment explanation
Indices: 47036862--47036903 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
47036852 TCAACCTTAA
* **
47036862 AATAAAGTTAAAATTATTTC
1 AATAAAGTAAAAACAATTTC
47036882 AATAAAGTAAAAACAATTTC
1 AATAAAGTAAAAACAATTTC
47036902 AA
1 AA
47036904 CTAGTCAAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.57, C:0.07, G:0.05, T:0.31
Consensus pattern (20 bp):
AATAAAGTAAAAACAATTTC
Found at i:47043171 original size:21 final size:21
Alignment explanation
Indices: 47043146--47043193 Score: 78
Period size: 21 Copynumber: 2.3 Consensus size: 21
47043136 GTATGGAGGG
47043146 AGGCACACGACCGTGTGGCAT
1 AGGCACACGACCGTGTGGCAT
* *
47043167 AGGCACATGACCTTGTGGCAT
1 AGGCACACGACCGTGTGGCAT
47043188 AGGCAC
1 AGGCAC
47043194 GCACCCGTGT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.25, C:0.27, G:0.31, T:0.17
Consensus pattern (21 bp):
AGGCACACGACCGTGTGGCAT
Found at i:47046653 original size:21 final size:21
Alignment explanation
Indices: 47046588--47046646 Score: 100
Period size: 21 Copynumber: 2.8 Consensus size: 21
47046578 GCATGGAGGG
*
47046588 AGGCACACGACCTTGTGGCAT
1 AGGCACACGACCGTGTGGCAT
*
47046609 AGGCACATGACCGTGTGGCAT
1 AGGCACACGACCGTGTGGCAT
47046630 AGGCACACGACCGTGTG
1 AGGCACACGACCGTGTG
47046647 AACTAGGGAT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.24, C:0.27, G:0.32, T:0.17
Consensus pattern (21 bp):
AGGCACACGACCGTGTGGCAT
Found at i:47046938 original size:8 final size:8
Alignment explanation
Indices: 47046925--47046952 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
47046915 GAAATCGATA
47046925 AAATCCCC
1 AAATCCCC
47046933 AAATCCCC
1 AAATCCCC
47046941 AAATCCCC
1 AAATCCCC
47046949 AAAT
1 AAAT
47046953 TGGCCACACG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.43, C:0.43, G:0.00, T:0.14
Consensus pattern (8 bp):
AAATCCCC
Found at i:47047378 original size:7 final size:7
Alignment explanation
Indices: 47047366--47047400 Score: 52
Period size: 7 Copynumber: 4.9 Consensus size: 7
47047356 ATTTTCAAAC
47047366 AAAAAAG
1 AAAAAAG
47047373 AAAAAAG
1 AAAAAAG
47047380 AAAAAAG
1 AAAAAAG
*
47047387 AAAGAAG
1 AAAAAAG
47047394 AAGAAAA
1 AA-AAAA
47047401 ACCAAAAAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
7 22 0.88
8 3 0.12
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (7 bp):
AAAAAAG
Found at i:47051324 original size:23 final size:23
Alignment explanation
Indices: 47051294--47051398 Score: 158
Period size: 23 Copynumber: 4.6 Consensus size: 23
47051284 TAAGTTGATG
47051294 AACAGTAAGCTCTATTGAGCTGA
1 AACAGTAAGCTCTATTGAGCTGA
* *
47051317 AACGGTAAGCTCTATCGAGCTG-
1 AACAGTAAGCTCTATTGAGCTGA
*
47051339 AACAGTAAGCTCTATTGAGTTGA
1 AACAGTAAGCTCTATTGAGCTGA
*
47051362 AACAGTAAGCTCTAATGAGCTGAA
1 AACAGTAAGCTCTATTGAGCTG-A
47051386 AACAGTAAGCTCT
1 AACAGTAAGCTCT
47051399 TACAAGCTAA
Statistics
Matches: 73, Mismatches: 7, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
22 19 0.26
23 40 0.55
24 14 0.19
ACGTcount: A:0.35, C:0.18, G:0.22, T:0.25
Consensus pattern (23 bp):
AACAGTAAGCTCTATTGAGCTGA
Found at i:47051346 original size:45 final size:45
Alignment explanation
Indices: 47051292--47051398 Score: 162
Period size: 45 Copynumber: 2.3 Consensus size: 45
47051282 CTTAAGTTGA
*
47051292 TGAACAGTAAGCTCTATTGAGCTGAAACGGTAAGCTCT-ATCGAGC
1 TGAACAGTAAGCTCTATTGAGCTGAAACAGTAAGCTCTAAT-GAGC
*
47051337 TGAACAGTAAGCTCTATTGAGTTGAAACAGTAAGCTCTAATGAGC
1 TGAACAGTAAGCTCTATTGAGCTGAAACAGTAAGCTCTAATGAGC
47051382 TGAAAACAGTAAGCTCT
1 TG--AACAGTAAGCTCT
47051399 TACAAGCTAA
Statistics
Matches: 57, Mismatches: 2, Indels: 4
0.90 0.03 0.06
Matches are distributed among these distances:
45 42 0.74
46 2 0.04
47 13 0.23
ACGTcount: A:0.35, C:0.18, G:0.22, T:0.25
Consensus pattern (45 bp):
TGAACAGTAAGCTCTATTGAGCTGAAACAGTAAGCTCTAATGAGC
Found at i:47051600 original size:23 final size:24
Alignment explanation
Indices: 47051565--47051621 Score: 68
Period size: 23 Copynumber: 2.5 Consensus size: 24
47051555 AGCATTTAAT
*
47051565 AATCA-ATA-ATTCAATT-TATCA
1 AATCATATACATTCAATTCAATCA
*
47051586 AATCATATACATTCAATTCAATTA
1 AATCATATACATTCAATTCAATCA
47051610 AAT-ATATACATT
1 AATCATATACATT
47051622 TAAATACTCA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
21 5 0.16
22 3 0.10
23 17 0.55
24 6 0.19
ACGTcount: A:0.47, C:0.14, G:0.00, T:0.39
Consensus pattern (24 bp):
AATCATATACATTCAATTCAATCA
Found at i:47060060 original size:28 final size:28
Alignment explanation
Indices: 47059997--47060094 Score: 126
Period size: 28 Copynumber: 3.5 Consensus size: 28
47059987 TTATTAAGTC
*
47059997 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
47060024 TGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
47060052 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
47060081 CGCACACTTAGTGC
1 CGCACACTTAGTGC
47060095 CAATCTCATG
Statistics
Matches: 62, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
27 21 0.34
28 22 0.35
29 19 0.31
ACGTcount: A:0.32, C:0.28, G:0.13, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:47069109 original size:68 final size:64
Alignment explanation
Indices: 47068866--47069118 Score: 165
Period size: 68 Copynumber: 3.9 Consensus size: 64
47068856 CATAATTTTG
* * * * * * * *
47068866 GCTCTCTTGTAC-ACATGGTGAACACTTAGTACCACCCATGTGACCTAGC--CAGTTTATCACGT
1 GCTCTCTTGT-CTACATGATGTACACATAGCACCACACATGCGACCTAGCTACA-TATATCCCGT
47068928 A
64 A
* * * * * **
47068929 GCTCTCTTGTCTACATGGTGTCCTTCACCTGGAACCACGTATGCGACCTAGCTACATATATCCCG
1 GCTCTCTTGTCTACATGATG---TACACATAGCACCACACATGCGACCTAGCTACATATATCCCG
47068994 TA
63 TA
* * * * * *
47068996 GCTCTCTTGTCTACATGGTGTACACATAGTATCACCCATGTGACCTAGCTACATCATAATGTCTC
1 GCTCTCTTGTCTACATGATGTACACATAGCACCACACATGCGACCTAGCTACAT-AT-A--TCCC
47069061 GTA
62 GTA
* *
47069064 GCTCTCTTGTAC-ACATGATGTGCAC-TCAGCACCATACATGCGACCTAGCTACATA
1 GCTCTCTTGT-CTACATGATGTACACAT-AGCACCACACATGCGACCTAGCTACATA
47069119 CCATCTGTAT
Statistics
Matches: 152, Mismatches: 26, Indels: 20
0.77 0.13 0.10
Matches are distributed among these distances:
62 1 0.01
63 18 0.12
64 26 0.17
65 2 0.01
66 22 0.14
67 31 0.20
68 51 0.34
69 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.29
Consensus pattern (64 bp):
GCTCTCTTGTCTACATGATGTACACATAGCACCACACATGCGACCTAGCTACATATATCCCGTA
Found at i:47069616 original size:29 final size:30
Alignment explanation
Indices: 47069583--47069642 Score: 86
Period size: 29 Copynumber: 2.0 Consensus size: 30
47069573 TCCTTAACTC
47069583 AAACTTTAGCAAAATTACA-TTTTTCCCCT
1 AAACTTTAGCAAAATTACACTTTTTCCCCT
* * *
47069612 AAACTTTTGCATATTTACACTTTTTCCCCT
1 AAACTTTAGCAAAATTACACTTTTTCCCCT
47069642 A
1 A
47069643 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 16 0.59
30 11 0.41
ACGTcount: A:0.30, C:0.25, G:0.03, T:0.42
Consensus pattern (30 bp):
AAACTTTAGCAAAATTACACTTTTTCCCCT
Found at i:47076098 original size:42 final size:42
Alignment explanation
Indices: 47076040--47076485 Score: 646
Period size: 42 Copynumber: 10.6 Consensus size: 42
47076030 TCAATACCTC
* *
47076040 TGTCCTAGACAGGGTCTTACAC-AGAATCAGATACGATGCCGA
1 TGTCCCAGACATGGTCTTACACGA-AATCAGATACGATGCCGA
*
47076082 CGTCCCAGACATGGTCTTACACGAAATCAGATACGATGCCGA
1 TGTCCCAGACATGGTCTTACACGAAATCAGATACGATGCCGA
* * * * *
47076124 TATCCTAAACATGGTCTTACACAAAATCAGATATGATGCCGA
1 TGTCCCAGACATGGTCTTACACGAAATCAGATACGATGCCGA
*
47076166 TGTCCCAGACATGTTCTTACACGAAATCAGATACGATGCCGA
1 TGTCCCAGACATGGTCTTACACGAAATCAGATACGATGCCGA
*
47076208 TGTCCCAGACATGGTCTTACACGAAATCAGATATGATGCCGA
1 TGTCCCAGACATGGTCTTACACGAAATCAGATACGATGCCGA
*
47076250 TGTCCCAGACATGGTCTTACACGTAATCAGATACGATGCCGA
1 TGTCCCAGACATGGTCTTACACGAAATCAGATACGATGCCGA
*
47076292 TGTCCCAGACATGGTCTTACACGTAATCAGATACGATGCCGA
1 TGTCCCAGACATGGTCTTACACGAAATCAGATACGATGCCGA
* * *
47076334 TGTCCCAAACATGGTCTTACACGTAATTAGATACGATGCCGA
1 TGTCCCAGACATGGTCTTACACGAAATCAGATACGATGCCGA
*
47076376 TGTCCCAGACATGGTCTTACACGAAATCAGATACGATGCCAA
1 TGTCCCAGACATGGTCTTACACGAAATCAGATACGATGCCGA
* *
47076418 TGTCCCAGACATGGTCTTACACGTAAATCTCAAAT-CGAGGCCTG-
1 TGTCCCAGACATGGTCTTACACG-AAA--TCAGATACGATGCC-GA
* *
47076462 TGTCCTAGACACGGTCTTACACGA
1 TGTCCCAGACATGGTCTTACACGA
47076486 TATCTCAGAT
Statistics
Matches: 369, Mismatches: 30, Indels: 9
0.90 0.07 0.02
Matches are distributed among these distances:
42 332 0.90
43 5 0.01
44 27 0.07
45 5 0.01
ACGTcount: A:0.31, C:0.26, G:0.20, T:0.24
Consensus pattern (42 bp):
TGTCCCAGACATGGTCTTACACGAAATCAGATACGATGCCGA
Found at i:47089079 original size:48 final size:48
Alignment explanation
Indices: 47089014--47089502 Score: 791
Period size: 48 Copynumber: 10.1 Consensus size: 48
47089004 GCTGAAATTG
* *
47089014 ATGTATAAGATATGTATATGTGGTAAAGCCGAATGGATAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
47089062 ATGTATGAAATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
47089110 ATGTATGAGATATGCATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
47089158 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
* *
47089206 ATGTATGAGATATGTATCTGTGGTAAAGCCGAATGGCTAATGCGAAATAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-AT
* * *
47089256 ATATATGAGATATGTATATGTGGTAAAGCTGAATGGTTAATGTGAAATAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-AT
* *
47089306 ATATATGAGATATCTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
47089354 ATGTATGAGATATGCATATGTGGTAAAGCCGAATGG-TCAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCT-AATGTGAAAT
* *
47089402 ATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
47089450 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
47089498 ATGTA
1 ATGTA
47089503 GGCGATGTGT
Statistics
Matches: 414, Mismatches: 23, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
47 1 0.00
48 320 0.77
49 5 0.01
50 88 0.21
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (48 bp):
ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
Found at i:47089448 original size:244 final size:242
Alignment explanation
Indices: 47089021--47089499 Score: 834
Period size: 244 Copynumber: 2.0 Consensus size: 242
47089011 TTGATGTATA
* *
47089021 AGATATGTATATGTGGTAAAGCCGAATGGATAATGTGAAATATGTATGAAATATGTATATGTGGT
1 AGATATGTATATGTGGTAAAGCCGAATGGATAATGTGAAATATATATGAAATATCTATATGTGGT
47089086 AAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCGAATGGCTAAT
66 AAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCGAATGGCTAAT
*
47089151 GTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGA
131 GTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGA
*
47089216 TATGTATCTGTGGTAAAGCCGAATGGCTAATGCGAAATATATATATG
196 TATGTATATGTGGTAAAGCCGAATGGCTAATGCGAAATATATATATG
* * *
47089263 AGATATGTATATGTGGTAAAGCTGAATGGTTAATGTGAAATATATATATGAGATATCTATATGTG
1 AGATATGTATATGTGGTAAAGCCGAATGGATAATGTG-AA-ATATATATGAAATATCTATATGTG
47089328 GTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCGAATGG-TC
64 GTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCGAATGGCT-
*
47089392 AATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG
128 AATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
* *
47089457 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATAT
193 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGCGAAATAT
47089500 GTAGGCGATG
Statistics
Matches: 224, Mismatches: 10, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
242 35 0.16
243 3 0.01
244 186 0.83
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (242 bp):
AGATATGTATATGTGGTAAAGCCGAATGGATAATGTGAAATATATATGAAATATCTATATGTGGT
AAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCGAATGGCTAAT
GTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGA
TATGTATATGTGGTAAAGCCGAATGGCTAATGCGAAATATATATATG
Found at i:47089696 original size:36 final size:36
Alignment explanation
Indices: 47089649--47089756 Score: 189
Period size: 36 Copynumber: 3.0 Consensus size: 36
47089639 GGAAATATAT
47089649 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTG
47089685 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGA-TTTG
* *
47089722 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
47089757 CATCTGAGCT
Statistics
Matches: 69, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
36 35 0.51
37 34 0.49
ACGTcount: A:0.22, C:0.19, G:0.31, T:0.27
Consensus pattern (36 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTG
Found at i:47089731 original size:37 final size:37
Alignment explanation
Indices: 47089649--47089756 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
47089639 GGAAATATAT
47089649 TCCGGGTAAGACCCGATGACTACGTGTGGAGA-TTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
47089685 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
47089722 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
47089757 CATCTGAGCT
Statistics
Matches: 69, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
36 32 0.46
37 37 0.54
ACGTcount: A:0.22, C:0.19, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:47100307 original size:27 final size:27
Alignment explanation
Indices: 47100269--47100321 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
47100259 CAGTTTGTAA
47100269 AATTATCATAATACCCCTATAGGGTAT
1 AATTATCATAATACCCCTATAGGGTAT
* *
47100296 AATTATCGTAATACCCCTATATGGTA
1 AATTATCATAATACCCCTATAGGGTA
47100322 GAATGACGAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.36, C:0.19, G:0.11, T:0.34
Consensus pattern (27 bp):
AATTATCATAATACCCCTATAGGGTAT
Found at i:47100772 original size:27 final size:27
Alignment explanation
Indices: 47100742--47100806 Score: 78
Period size: 28 Copynumber: 2.4 Consensus size: 27
47100732 ACATCTGATA
*
47100742 CTGATTCTATATTGGGCTTAA-GCCCAC
1 CTGATTCTATAATGGGC-TAAGGCCCAC
*
47100769 CTGATTCTGTTAATGGGCTAAGGCCCAC
1 CTGATTCT-ATAATGGGCTAAGGCCCAC
*
47100797 CTGATACTAT
1 CTGATTCTAT
47100807 TTCTGTGATG
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
27 12 0.38
28 20 0.62
ACGTcount: A:0.23, C:0.25, G:0.20, T:0.32
Consensus pattern (27 bp):
CTGATTCTATAATGGGCTAAGGCCCAC
Found at i:47103290 original size:46 final size:44
Alignment explanation
Indices: 47103186--47103293 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
47103176 TGTCTTTGAC
** * * *
47103186 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
47103230 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
47103276 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
47103294 TTTCTGTTCT
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:47110659 original size:46 final size:44
Alignment explanation
Indices: 47110552--47110659 Score: 135
Period size: 44 Copynumber: 2.4 Consensus size: 44
47110542 TGTCTTTGAC
** * * *
47110552 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
* *
47110596 ATGGACTTACATTGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
47110642 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
47110660 TTTCTGTTCT
Statistics
Matches: 54, Mismatches: 8, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
44 32 0.59
46 22 0.41
ACGTcount: A:0.30, C:0.23, G:0.13, T:0.34
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:47113503 original size:27 final size:27
Alignment explanation
Indices: 47113469--47113695 Score: 274
Period size: 27 Copynumber: 8.4 Consensus size: 27
47113459 TGGATAAGTT
*
47113469 GTAGAATTACCGAAATACCCCTGTAAG
1 GTAGAATTACCGAAATACCCCTGTAGG
** * *
47113496 GTAGAATTACTAAAATAACCCTATAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
** *
47113523 GTAGAATTATTGAAATACCCCTATAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
** *
47113550 GTAGAATTATTGAAATACCCCTATAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
47113577 GTAGAATTACCGAAATACCCCTGTAAG
1 GTAGAATTACCGAAATACCCCTGTAGG
** *
47113604 ACAGAATTACCGAAATACCCTTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
47113631 GTAGAAATACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * *
47113658 GTAGAATTACCGAGATACCCTTGTGGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
47113685 GTAAAATTACC
1 GTAGAATTACC
47113696 ATTTGGCCAC
Statistics
Matches: 175, Mismatches: 25, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 175 1.00
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.25
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAGG
Found at i:47114390 original size:27 final size:26
Alignment explanation
Indices: 47114346--47114397 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
47114336 CTCGTTGCAA
*
47114346 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
47114373 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
47114398 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:47114465 original size:26 final size:27
Alignment explanation
Indices: 47114436--47114494 Score: 77
Period size: 27 Copynumber: 2.2 Consensus size: 27
47114426 CCACATATAT
*
47114436 ATATCTGT-TCTGGTGGGC-TAGTCACA
1 ATATCTGTATCTGGT-GACTTAGTCACA
*
47114462 ATATCTGTATCTGGTGACTTTGTCACA
1 ATATCTGTATCTGGTGACTTAGTCACA
47114489 ATATCT
1 ATATCT
47114495 AGCAGCCTCG
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
26 10 0.34
27 19 0.66
ACGTcount: A:0.22, C:0.19, G:0.20, T:0.39
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACTTAGTCACA
Found at i:47119491 original size:68 final size:68
Alignment explanation
Indices: 47119324--47119499 Score: 150
Period size: 68 Copynumber: 2.6 Consensus size: 68
47119314 TAGTACCACT
* * * * *
47119324 CATGCGACCTAGCT-GAT-T-TGTCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCTACATATATATCTCGTAGCTCTCTTGTCTACATGGTGTACATCAC-TCGAAT
*
47119386 CACG
65 CACA
* * *
47119390 CATGCGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGG-GATACATC-C-CGT
1 CATGCGACCTAGCTACATATATATCT--CGTAGCTCTCTTGTCTACATGGTG-TACATCACTCGA
47119452 ATCACA
63 ATCACA
*
47119458 CATGTGACCTAGCTACTATATAGTATCTCGTAGC-CTTCTTGT
1 CATGCGACCTAGCTAC-ATATA-TATCTCGTAGCTC-TCTTGT
47119500 ACACATGATG
Statistics
Matches: 91, Mismatches: 10, Indels: 16
0.78 0.09 0.14
Matches are distributed among these distances:
66 14 0.15
67 3 0.03
68 34 0.37
69 8 0.09
70 6 0.07
71 26 0.29
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (68 bp):
CATGCGACCTAGCTACATATATATCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTCGAATC
ACA
Found at i:47130389 original size:27 final size:27
Alignment explanation
Indices: 47130355--47130554 Score: 256
Period size: 27 Copynumber: 7.4 Consensus size: 27
47130345 TGGATAAGTT
*
47130355 GTAGAATTACCGAAATACCCCTGTAAG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
47130382 GTAGAATTTCCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
** *
47130409 GTAGAATTATTGAAATACCCTTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
47130436 GTAGAATTACCGAAATATCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
47130463 ATAGAATTACCGAAATACCCTTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * *
47130490 GTAGAAATACCGAAATACTCCTATAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * * *
47130517 ATAGAATTACCGAGATACCCTTGTGGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
47130544 GTAAAATTACC
1 GTAGAATTACC
47130555 ATTTTGCCCC
Statistics
Matches: 146, Mismatches: 27, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 146 1.00
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.26
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAGG
Found at i:47134527 original size:13 final size:13
Alignment explanation
Indices: 47134509--47134533 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
47134499 TAATGGTATA
47134509 TTGAATCCATGAT
1 TTGAATCCATGAT
47134522 TTGAATCCATGA
1 TTGAATCCATGA
47134534 AAATTTAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TTGAATCCATGAT
Found at i:47136437 original size:47 final size:47
Alignment explanation
Indices: 47136384--47136490 Score: 196
Period size: 47 Copynumber: 2.3 Consensus size: 47
47136374 ACAAGATATG
* *
47136384 TATATGTGATAAGGCCTAATGGCCTATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGGGAAAGTGTA
47136431 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGGGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGGGAAAGTGTA
47136478 TATATGTGATAAG
1 TATATGTGATAAG
47136491 TCCCGAAGGA
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 58 1.00
ACGTcount: A:0.33, C:0.07, G:0.29, T:0.31
Consensus pattern (47 bp):
TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGGGAAAGTGTA
Found at i:47137789 original size:33 final size:33
Alignment explanation
Indices: 47137747--47137813 Score: 125
Period size: 33 Copynumber: 2.0 Consensus size: 33
47137737 CGAGTCCGGT
47137747 ATTAGAGCTACGGTTTAGTCGATTCTAGGACTA
1 ATTAGAGCTACGGTTTAGTCGATTCTAGGACTA
*
47137780 ATTAGAGCTACGGTTTTGTCGATTCTAGGACTA
1 ATTAGAGCTACGGTTTAGTCGATTCTAGGACTA
47137813 A
1 A
47137814 CGTAGCACAT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.27, C:0.15, G:0.24, T:0.34
Consensus pattern (33 bp):
ATTAGAGCTACGGTTTAGTCGATTCTAGGACTA
Found at i:47138380 original size:40 final size:40
Alignment explanation
Indices: 47138323--47138639 Score: 363
Period size: 40 Copynumber: 8.0 Consensus size: 40
47138313 AGTTCAGTGA
* * * *
47138323 GTTATATCCGGGCTAAGTCCTGAAGGGCATTTGTGCCGAT
1 GTTATATCCGGGTTAAGTCCCGAAGAGCATTCGTGCCGAT
* * * *
47138363 GCTATATCCGGGTTAAGTCCCGAAGAGCATTCGCGCTGGT
1 GTTATATCCGGGTTAAGTCCCGAAGAGCATTCGTGCCGAT
* * *
47138403 GTTATACCCGGGTTAAGACCCGAAGAGCATTCGTG-CTAGT
1 GTTATATCCGGGTTAAGTCCCGAAGAGCATTCGTGCCGA-T
* *
47138443 GTTATATCCGGGTTAAGT-CCGAAGAGCATTCGTGCTGGT
1 GTTATATCCGGGTTAAGTCCCGAAGAGCATTCGTGCCGAT
* * *
47138482 GTTATACCCGGGTTAAGACCCGAAGAGCATTCGTG-CTAGT
1 GTTATATCCGGGTTAAGTCCCGAAGAGCATTCGTGCCGA-T
* *
47138522 GTTATATCCGGGTTAAGTCCCGAAGAGCATTCGTGCTGGT
1 GTTATATCCGGGTTAAGTCCCGAAGAGCATTCGTGCCGAT
* * * *
47138562 GTTATACCCGGGTTAAGACCCGAAGAGCATTCATG-CTAGT
1 GTTATATCCGGGTTAAGTCCCGAAGAGCATTCGTGCCGA-T
* *
47138602 GTTATATCCGAGCTAAGTCCCGAAGAGCATTCGTGCCG
1 GTTATATCCGGGTTAAGTCCCGAAGAGCATTCGTGCCG
47138640 GTGATGTGTA
Statistics
Matches: 228, Mismatches: 42, Indels: 13
0.81 0.15 0.05
Matches are distributed among these distances:
39 33 0.14
40 194 0.85
41 1 0.00
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
GTTATATCCGGGTTAAGTCCCGAAGAGCATTCGTGCCGAT
Found at i:47138456 original size:80 final size:80
Alignment explanation
Indices: 47138365--47138642 Score: 504
Period size: 80 Copynumber: 3.5 Consensus size: 80
47138355 GTGCCGATGC
*
47138365 TATATCCGGGTTAAGTCCCGAAGAGCATTCGCGCTGGTGTTATACCCGGGTTAAGACCCGAAGAG
1 TATATCCGGGTTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATACCCGGGTTAAGACCCGAAGAG
47138430 CATTCGTGCTAGTGT
66 CATTCGTGCTAGTGT
47138445 TATATCCGGGTTAAGT-CCGAAGAGCATTCGTGCTGGTGTTATACCCGGGTTAAGACCCGAAGAG
1 TATATCCGGGTTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATACCCGGGTTAAGACCCGAAGAG
47138509 CATTCGTGCTAGTGT
66 CATTCGTGCTAGTGT
47138524 TATATCCGGGTTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATACCCGGGTTAAGACCCGAAGAG
1 TATATCCGGGTTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATACCCGGGTTAAGACCCGAAGAG
*
47138589 CATTCATGCTAGTGT
66 CATTCGTGCTAGTGT
* * *
47138604 TATATCCGAGCTAAGTCCCGAAGAGCATTCGTGCCGGTG
1 TATATCCGGGTTAAGTCCCGAAGAGCATTCGTGCTGGTG
47138643 ATGTGTATTC
Statistics
Matches: 192, Mismatches: 5, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
79 78 0.41
80 114 0.59
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (80 bp):
TATATCCGGGTTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATACCCGGGTTAAGACCCGAAGAG
CATTCGTGCTAGTGT
Found at i:47138693 original size:43 final size:43
Alignment explanation
Indices: 47138630--47138713 Score: 132
Period size: 43 Copynumber: 2.0 Consensus size: 43
47138620 CCCGAAGAGC
* * *
47138630 ATTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGG
1 ATTCGTGCCGGTGATATGTATTCAGGCCTTCATGCCTAGCAGG
*
47138673 ATTCGTGCCGGTGATATGTATTCAGGCTTTCATGCCTAGCA
1 ATTCGTGCCGGTGATATGTATTCAGGCCTTCATGCCTAGCA
47138714 AGCTTAATGC
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.15, C:0.23, G:0.30, T:0.32
Consensus pattern (43 bp):
ATTCGTGCCGGTGATATGTATTCAGGCCTTCATGCCTAGCAGG
Found at i:47138729 original size:43 final size:43
Alignment explanation
Indices: 47138635--47138730 Score: 111
Period size: 43 Copynumber: 2.2 Consensus size: 43
47138625 AGAGCATTCG
* * * * **
47138635 TGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGATTCG
1 TGCCGGTGATATGTATTCAGGCCTTCATGCCTAGCAAGATTAA
* *
47138678 TGCCGGTGATATGTATTCAGGCTTTCATGCCTAGCAAGCTTAA
1 TGCCGGTGATATGTATTCAGGCCTTCATGCCTAGCAAGATTAA
*
47138721 TGCTGGTGAT
1 TGCCGGTGAT
47138731 CTGAGCAAAG
Statistics
Matches: 44, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.17, C:0.21, G:0.30, T:0.32
Consensus pattern (43 bp):
TGCCGGTGATATGTATTCAGGCCTTCATGCCTAGCAAGATTAA
Found at i:47138921 original size:54 final size:55
Alignment explanation
Indices: 47138862--47138979 Score: 152
Period size: 56 Copynumber: 2.1 Consensus size: 55
47138852 ATGAATAAGG
* *
47138862 GCACTATGTGTGTGA-AT-GAT-TTGAGGCATTGTGTGTGCAAATTCCTTTAACCGA
1 GCACTATGTGGGTGAGATCGATATTGAGGCACTGTGTGTG--AATTCCTTTAACCGA
*
47138916 GCACTATGTGGGTGAGATCGATAATTGAGGCACTGTGTGTGAATTTCTTTAACCGA
1 GCACTATGTGGGTGAGATCGAT-ATTGAGGCACTGTGTGTGAATTCCTTTAACCGA
*
47138972 GTACTATG
1 GCACTATG
47138980 AGTGCAAGAT
Statistics
Matches: 56, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
54 14 0.25
55 2 0.04
56 24 0.43
58 16 0.29
ACGTcount: A:0.25, C:0.14, G:0.27, T:0.34
Consensus pattern (55 bp):
GCACTATGTGGGTGAGATCGATATTGAGGCACTGTGTGTGAATTCCTTTAACCGA
Found at i:47138990 original size:56 final size:56
Alignment explanation
Indices: 47138882--47139015 Score: 144
Period size: 56 Copynumber: 2.3 Consensus size: 56
47138872 TGTGAATGAT
* * **
47138882 TTGAGGCATTGTGTGTGCAAATTCCTTTAACCGAGCACTATGTGGGTGAGATCGATAA
1 TTGAGGCACTGTGTGTG--AATTCCTTTAACCGAGCACTATGAGGGCAAGATCGATAA
* * * *
47138940 TTGAGGCACTGTGTGTGAATTTCTTTAACCGAGTACTATGAGTGCAAGATCGATCA
1 TTGAGGCACTGTGTGTGAATTCCTTTAACCGAGCACTATGAGGGCAAGATCGATAA
*
47138996 GTG-GGCACTAAGTGTGTGAA
1 TTGAGGCACT--GTGTGTGAA
47139016 ATGGAATTCA
Statistics
Matches: 65, Mismatches: 9, Indels: 5
0.82 0.11 0.06
Matches are distributed among these distances:
55 6 0.09
56 34 0.52
57 9 0.14
58 16 0.25
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (56 bp):
TTGAGGCACTGTGTGTGAATTCCTTTAACCGAGCACTATGAGGGCAAGATCGATAA
Found at i:47141153 original size:13 final size:13
Alignment explanation
Indices: 47141135--47141159 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
47141125 TAATGGTATA
47141135 TTGAATCCATGAT
1 TTGAATCCATGAT
47141148 TTGAATCCATGA
1 TTGAATCCATGA
47141160 AAATTTAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TTGAATCCATGAT
Found at i:47143064 original size:47 final size:47
Alignment explanation
Indices: 47143011--47143117 Score: 196
Period size: 47 Copynumber: 2.3 Consensus size: 47
47143001 ACAAGATATG
*
47143011 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTAAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGGAAAAGTGTA
*
47143058 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGGGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGGAAAAGTGTA
47143105 TATATGTGATAAG
1 TATATGTGATAAG
47143118 TCCCGAAGGA
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 58 1.00
ACGTcount: A:0.34, C:0.07, G:0.29, T:0.30
Consensus pattern (47 bp):
TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGGAAAAGTGTA
Found at i:47163812 original size:27 final size:27
Alignment explanation
Indices: 47163687--47164141 Score: 218
Period size: 27 Copynumber: 16.8 Consensus size: 27
47163677 CCTCAAATTG
* * *
47163687 TAAAATTACCAAAGTACCCTCGATTTC
1 TAAAATTACCAAAATACCCTTGATTTA
* **** *
47163714 TAGAATTACCGTTTTACCCTCGATTTA
1 TAAAATTACCAAAATACCCTTGATTTA
* *** *
47163741 TAGAATTACCATTTTACCCTCGATTTA
1 TAAAATTACCAAAATACCCTTGATTTA
* * * ***
47163768 TAGAATAACTATTTTACCCTTGATTTA
1 TAAAATTACCAAAATACCCTTGATTTA
* * * * *
47163795 CAAAATTACTAAAATACCATCGGTTTA
1 TAAAATTACCAAAATACCCTTGATTTA
* * *
47163822 CAAAATTACCAAAATACCCTCGA-TCA
1 TAAAATTACCAAAATACCCTTGATTTA
* *
47163848 GTAAAATTACCAAAATACCCTAG-TTTG
1 -TAAAATTACCAAAATACCCTTGATTTA
* * * * *
47163875 TAAAATTGCTAACATACCCTTGGTTTG
1 TAAAATTACCAAAATACCCTTGATTTA
* * ** *
47163902 TAAAATTATCGAAATACCCTCAATTTG
1 TAAAATTACCAAAATACCCTTGATTTA
* *
47163929 TAAAATTACCAAAATACCCCT-AGTTTG
1 TAAAATTACCAAAATACCCTTGA-TTTA
* *
47163956 TAAAATTACCAAAATACCAC-TGGTTTG
1 TAAAATTACCAAAATACC-CTTGATTTA
* * * ** *
47163983 TGAAATTGCCGAAATACCCTCAATTTG
1 TAAAATTACCAAAATACCCTTGATTTA
*
47164010 TAAAATTACCAAAATACCCCTGATTTA
1 TAAAATTACCAAAATACCCTTGATTTA
* * * *
47164037 CAAAGTTA-TAGAAATACCCTTGACTTTC
1 TAAAATTACCA-AAATACCCTTGA-TTTA
*** * *
47164065 TAAAAATTATGGAAATACCATTGGTTTA
1 T-AAAATTACCAAAATACCCTTGATTTA
* ** *
47164093 CAAAATTACTGAAATACCCTTGGTTTA
1 TAAAATTACCAAAATACCCTTGATTTA
* * *
47164120 TAGATTTACCAAAACACCCTTG
1 TAAAATTACCAAAATACCCTTG
47164142 TAGGATGAAA
Statistics
Matches: 338, Mismatches: 79, Indels: 22
0.77 0.18 0.05
Matches are distributed among these distances:
26 23 0.07
27 292 0.86
28 7 0.02
29 16 0.05
ACGTcount: A:0.38, C:0.20, G:0.09, T:0.33
Consensus pattern (27 bp):
TAAAATTACCAAAATACCCTTGATTTA
Found at i:47163867 original size:81 final size:81
Alignment explanation
Indices: 47163782--47164054 Score: 295
Period size: 81 Copynumber: 3.4 Consensus size: 81
47163772 ATAACTATTT
* ** * * *
47163782 TACCCTTGATTTACAAAATTACTAAAATACCATCGGTTTACAAAATTACCAAAATACCCTCGATC
1 TACCCCTGATTTACAAAATTACTAAAATACCATCGGTTTGTAAAATTACCGAAATACCCTCAATT
*
47163847 AGTAAAATTACCAAAA
66 TGTAAAATTACCAAAA
** * * * * *
47163863 TA-CCCT-AGTTTGTAAAATTGCTAACATACCCTTGGTTTGTAAAATTATCGAAATACCCTCAAT
1 TACCCCTGA-TTTACAAAATTACTAAAATACCATCGGTTTGTAAAATTACCGAAATACCCTCAAT
47163926 TTGTAAAATTACCAAAA
65 TTGTAAAATTACCAAAA
** * * *
47163943 TACCCCT-AGTTTGTAAAATTACCAAAATACCA-CTGGTTTGTGAAATTGCCGAAATACCCTCAA
1 TACCCCTGA-TTTACAAAATTACTAAAATACCATC-GGTTTGTAAAATTACCGAAATACCCTCAA
47164006 TTTGTAAAATTACCAAAA
64 TTTGTAAAATTACCAAAA
*
47164024 TACCCCTGATTTACAAAGTTA-TAGAAATACC
1 TACCCCTGATTTACAAAATTACTA-AAATACC
47164055 CTTGACTTTC
Statistics
Matches: 161, Mismatches: 26, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
79 1 0.01
80 65 0.40
81 94 0.58
82 1 0.01
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (81 bp):
TACCCCTGATTTACAAAATTACTAAAATACCATCGGTTTGTAAAATTACCGAAATACCCTCAATT
TGTAAAATTACCAAAA
Found at i:47164193 original size:27 final size:27
Alignment explanation
Indices: 47164172--47164241 Score: 95
Period size: 27 Copynumber: 2.6 Consensus size: 27
47164162 ACCCCTATTA
*
47164172 GGTAAAAAGACTGTAAAGCCCCTGTAG
1 GGTAAAAAGACCGTAAAGCCCCTGTAG
**
47164199 GGTAAAGTGACCGTAAAGCCCCTGTAG
1 GGTAAAAAGACCGTAAAGCCCCTGTAG
**
47164226 GGTAAAGTGACCGTAA
1 GGTAAAAAGACCGTAA
47164242 TACCCTTGTA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 40 1.00
ACGTcount: A:0.34, C:0.19, G:0.29, T:0.19
Consensus pattern (27 bp):
GGTAAAAAGACCGTAAAGCCCCTGTAG
Found at i:47164251 original size:27 final size:27
Alignment explanation
Indices: 47164184--47164241 Score: 116
Period size: 27 Copynumber: 2.1 Consensus size: 27
47164174 TAAAAAGACT
47164184 GTAAAGCCCCTGTAGGGTAAAGTGACC
1 GTAAAGCCCCTGTAGGGTAAAGTGACC
47164211 GTAAAGCCCCTGTAGGGTAAAGTGACC
1 GTAAAGCCCCTGTAGGGTAAAGTGACC
47164238 GTAA
1 GTAA
47164242 TACCCTTGTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.31, C:0.21, G:0.29, T:0.19
Consensus pattern (27 bp):
GTAAAGCCCCTGTAGGGTAAAGTGACC
Found at i:47164257 original size:27 final size:27
Alignment explanation
Indices: 47164184--47164263 Score: 99
Period size: 27 Copynumber: 3.0 Consensus size: 27
47164174 TAAAAAGACT
*
47164184 GTAAAGCCCCTGTAGGGTAAAGTGACC
1 GTAAAGCCCCTGTAGAGTAAAGTGACC
*
47164211 GTAAAGCCCCTGTAGGGTAAAGTGACC
1 GTAAAGCCCCTGTAGAGTAAAGTGACC
* * *
47164238 GTAATA-CCCTTGTATAGTAAAATGAC
1 GTAA-AGCCCCTGTAGAGTAAAGTGAC
47164264 GAATATGCCC
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
27 47 0.98
28 1 0.02
ACGTcount: A:0.33, C:0.20, G:0.25, T:0.23
Consensus pattern (27 bp):
GTAAAGCCCCTGTAGAGTAAAGTGACC
Found at i:47165058 original size:25 final size:26
Alignment explanation
Indices: 47165029--47165177 Score: 194
Period size: 26 Copynumber: 5.8 Consensus size: 26
47165019 GAAGAAGTGC
*
47165029 AAAAAGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
**
47165055 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
47165081 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
* * * **
47165107 AAAATGGCTTATGCCCTAATTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
* *
47165133 AAAAGGG-TTTTGCCCCAGTTTACCA
1 AAAAGGGCTTATGCCCCAGTTTACCG
47165158 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
47165178 ATTAAAGAGG
Statistics
Matches: 105, Mismatches: 17, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
25 29 0.28
26 76 0.72
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:47165107 original size:52 final size:52
Alignment explanation
Indices: 47165029--47165177 Score: 230
Period size: 52 Copynumber: 2.9 Consensus size: 52
47165019 GAAGAAGTGC
*
47165029 AAAAAGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTG
* * *
47165081 AAAAGGGCTTATGCCCCAGTTTACCGAAAATGGCTTATGCCCTAATTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTG
* *
47165133 AAAAGGG-TTTTGCCCCAGTTTACCAAAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTT
47165178 ATTAAAGAGG
Statistics
Matches: 88, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
50 8 0.09
51 25 0.28
52 55 0.62
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (52 bp):
AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTG
Found at i:47165381 original size:42 final size:42
Alignment explanation
Indices: 47165322--47165413 Score: 123
Period size: 42 Copynumber: 2.2 Consensus size: 42
47165312 TAGTCTCCCC
* * * *
47165322 AAATGGGCTTGCATACATTCATGTG-TATTTCATGTGATACTG
1 AAATGGGCTTGCATACATCCAT-TGACATTACATGTGATACTA
*
47165364 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTA
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATACTA
47165406 AAATGGGC
1 AAATGGGC
47165414 CTAAGGGCCA
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
41 2 0.05
42 42 0.95
ACGTcount: A:0.30, C:0.15, G:0.21, T:0.34
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATACTA
Found at i:47166330 original size:34 final size:35
Alignment explanation
Indices: 47166259--47166330 Score: 85
Period size: 34 Copynumber: 2.1 Consensus size: 35
47166249 CGTATCCTAG
* **
47166259 CTACAGTCTTAGTCTTCTAAAGTTTTCAGTTTTCC
1 CTACAGTCTCAGTCTTCTAAAGTTTTCAGTTGACC
*
47166294 CTACTGTCTCAGT-TTCTAAAG-TTTCAGTATGACC
1 CTACAGTCTCAGTCTTCTAAAGTTTTCAGT-TGACC
47166328 CTA
1 CTA
47166331 ACTAAAGAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
33 7 0.22
34 14 0.44
35 11 0.34
ACGTcount: A:0.22, C:0.24, G:0.12, T:0.42
Consensus pattern (35 bp):
CTACAGTCTCAGTCTTCTAAAGTTTTCAGTTGACC
Found at i:47167782 original size:26 final size:26
Alignment explanation
Indices: 47167753--47167832 Score: 61
Period size: 26 Copynumber: 3.0 Consensus size: 26
47167743 TCAACCTTAA
47167753 TCCTTGAGGTATATCAGTAATTTTAC
1 TCCTTGAGGTATATCAGTAATTTTAC
* * * * *
47167779 TCCTAGGGGTAAATCTGTAAATTTTCC
1 TCCTTGAGGTATATCAGT-AATTTTAC
* * *
47167806 ACCTATAAAGGTATTTCAGTAATTTTA
1 TCCT-T-GAGGTATATCAGTAATTTTA
47167833 TCAGTTTTAA
Statistics
Matches: 38, Mismatches: 13, Indels: 4
0.69 0.24 0.07
Matches are distributed among these distances:
26 14 0.37
27 10 0.26
28 6 0.16
29 8 0.21
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.40
Consensus pattern (26 bp):
TCCTTGAGGTATATCAGTAATTTTAC
Found at i:47168478 original size:41 final size:40
Alignment explanation
Indices: 47168363--47168662 Score: 431
Period size: 40 Copynumber: 7.4 Consensus size: 40
47168353 CGTTTTTCAC
* *
47168363 TAAAACGCCACTAAAAACAGAGCATTAG-GAGCACTTTCGG
1 TAAAACGCCGCTAAAAACAGAGCATTAGCG-GCGCTTTCGG
*
47168403 TAAAACGCCGCTAAAAACAGAGCATTAGCGGCGCTTTAGG
1 TAAAACGCCGCTAAAAACAGAGCATTAGCGGCGCTTTCGG
* * *
47168443 TAAAACGCCACTAAAAACCAGAGCATTAGCAGCGCTTTAGG
1 TAAAACGCCGCTAAAAA-CAGAGCATTAGCGGCGCTTTCGG
**
47168484 TAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTCTA
1 TAAAACGCCGCTAAAAA-CAGAGCATTAGCGGCGCTTTCGG
* *
47168525 TAAAACGCCGTTAAAAACAGGGCATTAGCGGCGCTTTCGG
1 TAAAACGCCGCTAAAAACAGAGCATTAGCGGCGCTTTCGG
* * *
47168565 TAAAACGCCGCTAAAAACAGGGCATTAGCGCCGCTTTTGG
1 TAAAACGCCGCTAAAAACAGAGCATTAGCGGCGCTTTCGG
*
47168605 TAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGG
1 TAAAACGCCGCTAAAAA-CAGAGCATTAGCGGCGCTTTCGG
47168646 TAAAACGCCGCTAAAAA
1 TAAAACGCCGCTAAAAA
47168663 TCCCATAACC
Statistics
Matches: 238, Mismatches: 19, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
40 125 0.53
41 113 0.47
ACGTcount: A:0.35, C:0.24, G:0.22, T:0.18
Consensus pattern (40 bp):
TAAAACGCCGCTAAAAACAGAGCATTAGCGGCGCTTTCGG
Found at i:47168630 original size:162 final size:162
Alignment explanation
Indices: 47168363--47168662 Score: 494
Period size: 162 Copynumber: 1.9 Consensus size: 162
47168353 CGTTTTTCAC
47168363 TAAAACGCCACTAAAAACAGAGCATTAGGAGCACTTTCGGTAAAACGCCGCTAAAAACAGAGCAT
1 TAAAACGCCACTAAAAACAGAGCATTAGGAGCACTTTCGGTAAAACGCCGCTAAAAACAGAGCAT
*
47168428 TAGCGGCGCTTTAGGTAAAACGCCACTAAAAACCAGAGCATTAGCAGCGCTTTAGGTAAAACGCC
66 TAGCGCCGCTTTAGGTAAAACGCCACTAAAAACCAGAGCATTAGCAGCGCTTTAGGTAAAACGCC
47168493 GCTAAAAACCAGAGCATTAGCGGCGCTTTCTA
131 GCTAAAAACCAGAGCATTAGCGGCGCTTTCTA
** * * *
47168525 TAAAACGCCGTTAAAAACAGGGCATTAGCG-GCGCTTTCGGTAAAACGCCGCTAAAAACAGGGCA
1 TAAAACGCCACTAAAAACAGAGCATTAG-GAGCACTTTCGGTAAAACGCCGCTAAAAACAGAGCA
* * * *
47168589 TTAGCGCCGCTTTTGGTAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGTAAAACGC
65 TTAGCGCCGCTTTAGGTAAAACGCCACTAAAAACCAGAGCATTAGCAGCGCTTTAGGTAAAACGC
47168654 CGCTAAAAA
130 CGCTAAAAA
47168663 TCCCATAACC
Statistics
Matches: 127, Mismatches: 10, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
162 126 0.99
163 1 0.01
ACGTcount: A:0.35, C:0.24, G:0.22, T:0.18
Consensus pattern (162 bp):
TAAAACGCCACTAAAAACAGAGCATTAGGAGCACTTTCGGTAAAACGCCGCTAAAAACAGAGCAT
TAGCGCCGCTTTAGGTAAAACGCCACTAAAAACCAGAGCATTAGCAGCGCTTTAGGTAAAACGCC
GCTAAAAACCAGAGCATTAGCGGCGCTTTCTA
Found at i:47169711 original size:15 final size:15
Alignment explanation
Indices: 47169691--47169722 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
47169681 TTTAATTTAG
*
47169691 AAGATAAATGTATAT
1 AAGATAAATATATAT
47169706 AAGATAAATATATAT
1 AAGATAAATATATAT
47169721 AA
1 AA
47169723 AATATTATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.59, C:0.00, G:0.09, T:0.31
Consensus pattern (15 bp):
AAGATAAATATATAT
Found at i:47169761 original size:24 final size:24
Alignment explanation
Indices: 47169694--47169761 Score: 75
Period size: 24 Copynumber: 2.8 Consensus size: 24
47169684 AATTTAGAAG
* *
47169694 ATAAATGTATATAAGATAAATATAT
1 ATAAATATATATATGA-AAATATAT
* *
47169719 ATAAA-ATATTATTTTAAAATATAT
1 ATAAATATA-TATATGAAAATATAT
47169743 ATAAATATATATATGAAAA
1 ATAAATATATATATGAAAA
47169762 GTGGTTTAGT
Statistics
Matches: 35, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
24 23 0.66
25 12 0.34
ACGTcount: A:0.57, C:0.00, G:0.04, T:0.38
Consensus pattern (24 bp):
ATAAATATATATATGAAAATATAT
Found at i:47171295 original size:18 final size:18
Alignment explanation
Indices: 47171280--47171322 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
47171270 TTAATGATGA
47171280 TGATGATGATGTTGATAC
1 TGATGATGATGTTGATAC
*
47171298 TGATGTTGATGTTGAT-C
1 TGATGATGATGTTGATAC
47171315 TCGATGAT
1 T-GATGAT
47171323 TATACCCTTG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 2 0.09
18 20 0.91
ACGTcount: A:0.23, C:0.07, G:0.28, T:0.42
Consensus pattern (18 bp):
TGATGATGATGTTGATAC
Found at i:47173349 original size:133 final size:133
Alignment explanation
Indices: 47173111--47173362 Score: 495
Period size: 133 Copynumber: 1.9 Consensus size: 133
47173101 TGGTGATTCC
47173111 ATTTTGGTTATTTAGATGTTCTTTTGGTCTGTTTTCATGTTTCTATCCAACTTATGTGTTTAGTG
1 ATTTTGGTTATTTAGATGTTCTTTTGGTCTGTTTTCATGTTTCTATCCAACTTATGTGTTTAGTG
47173176 TGGACTTAGATTGATTTAAGAGTTTAATGCTGTCTTGTTGCTCACGTTTTATATAATAAAATTGT
66 TGGACTTAGATTGATTTAAGAGTTTAATGCTGTCTTGTTGCTCACGTTTTATATAATAAAATTGT
47173241 TAT
131 TAT
47173244 ATTTTGGTTATTTAGATGTTCTTTTGGTCTGTTTTCATGTTTCTATCCAACTTATGTGTTTAGTG
1 ATTTTGGTTATTTAGATGTTCTTTTGGTCTGTTTTCATGTTTCTATCCAACTTATGTGTTTAGTG
*
47173309 TGGACTTAGATTGATTTAAGAGTTTATTGCTGTCTTGTTGCTCACGTTTTATAT
66 TGGACTTAGATTGATTTAAGAGTTTAATGCTGTCTTGTTGCTCACGTTTTATAT
47173363 TGTTGAATTC
Statistics
Matches: 118, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
133 118 1.00
ACGTcount: A:0.20, C:0.10, G:0.19, T:0.51
Consensus pattern (133 bp):
ATTTTGGTTATTTAGATGTTCTTTTGGTCTGTTTTCATGTTTCTATCCAACTTATGTGTTTAGTG
TGGACTTAGATTGATTTAAGAGTTTAATGCTGTCTTGTTGCTCACGTTTTATATAATAAAATTGT
TAT
Found at i:47175917 original size:21 final size:21
Alignment explanation
Indices: 47175888--47175927 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
47175878 GTTTTTATAT
*
47175888 TTTGGTTCAACTTAAGTATTA
1 TTTGATTCAACTTAAGTATTA
47175909 TTTGATTCAACTTAAGTAT
1 TTTGATTCAACTTAAGTAT
47175928 GAATTAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.30, C:0.10, G:0.12, T:0.47
Consensus pattern (21 bp):
TTTGATTCAACTTAAGTATTA
Found at i:47176171 original size:460 final size:461
Alignment explanation
Indices: 47175047--47176286 Score: 2304
Period size: 462 Copynumber: 2.7 Consensus size: 461
47175037 TTCTCTCCAA
* *
47175047 CCTTATTTTAAATATTTTAAAGATTTAAAGTATATAGGCTGGAAACCTGACAGGTTGCCTTATAT
1 CCTTATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATAT
*
47175112 CGAGCTACAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAA
66 CGAGCTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAA
47175177 ATTCAAAAAGAATTGAAAAAAGTTCTATCGCTATTGAATATTTATATAACCTTAATTTATTTCCA
131 ATTCAAAAAGAATTGAAAAAAGTTCTATCGCTATTGAATATTTATATAACCTTAATTTATTTCCA
*
47175242 ATTTACGTATAAAAATTAAACTACGATTCTTTCTTGATATTATTATATTCAAATTACTATTTTGT
196 ATTTACTTATAAAAATTAAACTACGATTCTTTCTTGATATTATTATATTCAAATTACTATTTTGT
* *
47175307 TATATTAAACATGTTTGATTTTAATATTTAATATTTTTAAATGTCTTTAAAAGTTAT-AACTAAT
261 TATATTAAACATGTTTGATTTTAATATTTAATATTTTTAAATGTCTTTAAAA-TTTTGTACTAAT
47175371 TTTTATCAAAATAGTATTATTAATTATTATTTGAAGTATGAATAAGTTTTTATATTTTGGTTCAA
325 TTTTATCAAAATAGTATTATTAATTATTATTTGAAGTATGAATAAGTTTTTATATTTTGGTTCAA
**
47175436 CTTAAGTATTATTTGATTCAACAGTTTTCAATGAATTAATTTTATTACCATATATGTAGCTTGCT
390 CTTAAGTATTATTTGATTCAACA-TTAACAATGAATTAATTTTATTACCATATATGTAGCTTGCT
47175501 TGTCCATT
454 TGTCCATT
* *
47175509 CCTTATTTTATATATTTTAAAGATTCAAAGTATATACGCTGGAAACCTGACGGGTTGCCTTATAT
1 CCTTATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATAT
*
47175574 CGAGCTGCAAGATATAATGGATCCTTCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAA
66 CGAGCTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAA
47175639 ATTCAAAAAGAATTGAAAAAAGTTCTATCGCTATTGAATATTTATATAACCTTAATTTATTTCCA
131 ATTCAAAAAGAATTGAAAAAAGTTCTATCGCTATTGAATATTTATATAACCTTAATTTATTTCCA
* *
47175704 ATTTACTTATAAAAATTAAACTACGATTCTTTCTTGATATTACTATATTCAAATTACTATTTTTT
196 ATTTACTTATAAAAATTAAACTACGATTCTTTCTTGATATTATTATATTCAAATTACTATTTTGT
*
47175769 TATATTAAACATGTTTGATTTTAATATTTAATATTTTTAAATATCTTTAAAATTTTGTACTAATT
261 TATATTAAACATGTTTGATTTTAATATTTAATATTTTTAAATGTCTTTAAAATTTTGTACTAATT
47175834 TTTATCAAAATAGTATTATTAATTATTATTTGAAGTATGAATAAGTTTTTATATTTTGGTTCAAC
326 TTTATCAAAATAGTATTATTAATTATTATTTGAAGTATGAATAAGTTTTTATATTTTGGTTCAAC
**
47175899 TTAAGTATTATTTGATTCAAC-TTAAGTATGAATTAATTTTATTACCATATATGTAGCTTGCTTG
391 TTAAGTATTATTTGATTCAACATTAACAATGAATTAATTTTATTACCATATATGTAGCTTGCTTG
47175963 TCCATT
456 TCCATT
47175969 CCTTATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATAT
1 CCTTATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATAT
47176034 CGAGCTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAA
66 CGAGCTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAA
47176099 ATTCAAAAAGAATTGAAAAAAGTTCTATCGCTATTGAATATTTATATAACCTTAATTTATTTCCA
131 ATTCAAAAAGAATTGAAAAAAGTTCTATCGCTATTGAATATTTATATAACCTTAATTTATTTCCA
47176164 ATTTACTTATAAAAATTAAACTACGATTCTTTCTTGATATTATTATATTCAAATTACTATTTTGT
196 ATTTACTTATAAAAATTAAACTACGATTCTTTCTTGATATTATTATATTCAAATTACTATTTTGT
47176229 TATATTAAACATGTTTGATTTTAATATTTAATATTTTTAAATGTCTTTAAAATTTTGT
261 TATATTAAACATGTTTGATTTTAATATTTAATATTTTTAAATGTCTTTAAAATTTTGT
47176287 TATATTAATA
Statistics
Matches: 755, Mismatches: 22, Indels: 4
0.97 0.03 0.01
Matches are distributed among these distances:
460 357 0.47
461 3 0.00
462 395 0.52
ACGTcount: A:0.35, C:0.12, G:0.11, T:0.42
Consensus pattern (461 bp):
CCTTATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATAT
CGAGCTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAA
ATTCAAAAAGAATTGAAAAAAGTTCTATCGCTATTGAATATTTATATAACCTTAATTTATTTCCA
ATTTACTTATAAAAATTAAACTACGATTCTTTCTTGATATTATTATATTCAAATTACTATTTTGT
TATATTAAACATGTTTGATTTTAATATTTAATATTTTTAAATGTCTTTAAAATTTTGTACTAATT
TTTATCAAAATAGTATTATTAATTATTATTTGAAGTATGAATAAGTTTTTATATTTTGGTTCAAC
TTAAGTATTATTTGATTCAACATTAACAATGAATTAATTTTATTACCATATATGTAGCTTGCTTG
TCCATT
Found at i:47183362 original size:40 final size:40
Alignment explanation
Indices: 47183307--47183490 Score: 228
Period size: 40 Copynumber: 4.6 Consensus size: 40
47183297 ATTTGAATGA
*
47183307 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
*
47183347 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
* * * *
47183387 TATCCGGGCAAAGACCCGAAGGCATTTGTGCAAGTTGA-TA
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGATTT
* * * *
47183427 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTA
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGATTT
* *
47183467 TACCCGGGTTAAGACCCGAAGGCA
1 TATCCGGGCTAAGACCCGAAGGCA
47183491 ATTGCGCTTG
Statistics
Matches: 133, Mismatches: 9, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
40 130 0.98
41 3 0.02
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
Found at i:47183509 original size:80 final size:80
Alignment explanation
Indices: 47183310--47183512 Score: 228
Period size: 80 Copynumber: 2.5 Consensus size: 80
47183300 TGAATGATAT
* * * * *
47183310 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAAGTCCCGAAGGCATTTA
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGGTTATATCCGGGCTAAGACCCGAAGGCATTTA
* * * *
47183375 TGCTAGTGATTTTAT
66 TGCGAGTGACTATAC
* * * * *
47183390 CCGGGCAAAGACCCGAAGGCATTTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGGTTATATCCGGGCTAAGACCCGAAGGCATTTA
47183455 TGCGAGTTG-CTATAC
66 TGCGAG-TGACTATAC
* * * *
47183470 CCGGGTTAAGACCCGAAGGCAATTGCGCTTGTGGTTATATCCG
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGGTTATATCCG
47183513 ACTAAATTTC
Statistics
Matches: 100, Mismatches: 22, Indels: 2
0.81 0.18 0.02
Matches are distributed among these distances:
80 98 0.98
81 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.27
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGGTTATATCCGGGCTAAGACCCGAAGGCATTTA
TGCGAGTGACTATAC
Found at i:47185429 original size:21 final size:21
Alignment explanation
Indices: 47185403--47185443 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
47185393 ACTTAGAGCG
47185403 GAGGCAGCAGCGAGGGAGGCA
1 GAGGCAGCAGCGAGGGAGGCA
47185424 GAGGCAGCAGCGAGGGAGGC
1 GAGGCAGCAGCGAGGGAGGC
47185444 GGAGCAGAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.27, C:0.20, G:0.54, T:0.00
Consensus pattern (21 bp):
GAGGCAGCAGCGAGGGAGGCA
Found at i:47185792 original size:43 final size:43
Alignment explanation
Indices: 47185745--47186070 Score: 370
Period size: 43 Copynumber: 7.5 Consensus size: 43
47185735 CTGGGCAAAT
47185745 TAGCGGCGTTTTTTAAAAAAGCGCCGCTAAAAGTACAGGTCTA
1 TAGCGGCGTTTTTTAAAAAAGCGCCGCTAAAAGTACAGGTCTA
47185788 TAGCGGCGTTTCTTTACAAAAAGCGCCGCTAAAAGTACAGGTCTA
1 TAGCGGCGTTT-TTTA-AAAAAGCGCCGCTAAAAGTACAGGTCTA
* * *
47185833 TAGCGGCG-CTTTTATAAAAAGCGCCGCT-AAAGTTCTTGGTCTA
1 TAGCGGCGTTTTTTA-AAAAAGCGCCGCTAAAAGTAC-AGGTCTA
* * * *
47185876 TAGCGGCGCTTTTGTAAAAAAACACCGTTAAAAGTACAGGTCTA
1 TAGCGGCG-TTTTTTAAAAAAGCGCCGCTAAAAGTACAGGTCTA
* * *
47185920 TAGCGGCATTTTTTATAAATGCGCCGCTAAAAGTACAGGTCTA
1 TAGCGGCGTTTTTTAAAAAAGCGCCGCTAAAAGTACAGGTCTA
* * * *
47185963 TAGTGGCGTTTTTTATAAAAGCGCCGCT-AAAGTTCTTGGTCTA
1 TAGCGGCGTTTTTTAAAAAAGCGCCGCTAAAAGTAC-AGGTCTA
* * * * * *
47186006 TAGCTGCGTTTTTTAAAAAAAGCGCCGGTAAAGGTCCTGGTCTT
1 TAGCGGCGTTTTTT-AAAAAAGCGCCGCTAAAAGTACAGGTCTA
*
47186050 TAGCGGCGCTTTTATAAAAAA
1 TAGCGGCG-TTTTTTAAAAAA
47186071 CGCTGCGAAC
Statistics
Matches: 241, Mismatches: 32, Indels: 19
0.83 0.11 0.07
Matches are distributed among these distances:
42 12 0.05
43 114 0.47
44 59 0.24
45 56 0.23
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (43 bp):
TAGCGGCGTTTTTTAAAAAAGCGCCGCTAAAAGTACAGGTCTA
Found at i:47185920 original size:87 final size:85
Alignment explanation
Indices: 47185745--47186070 Score: 341
Period size: 87 Copynumber: 3.7 Consensus size: 85
47185735 CTGGGCAAAT
*
47185745 TAGCGGCGTTTTTTAAAAAAGCGCCGCTAAAAGTACAGGTCTATAGCGGCGTTTCTTTACAAAAA
1 TAGCGGCGTTTTAT-AAAAAGCGCCGCTAAAAGTACAGGTCTATAGCGGCGTTT-TTTA-AAAAA
47185810 GCGCCGCTAAAAGTACAGGTCTA
63 GCGCCGCTAAAAGTACAGGTCTA
* * *
47185833 TAGCGGCGCTTTTATAAAAAGCGCCGCT-AAAGTTCTTGGTCTATAGCGGCGCTTTTGTAAAAAA
1 TAGCGGCG-TTTTATAAAAAGCGCCGCTAAAAGTAC-AGGTCTATAGCGGCG-TTTTTTAAAAAA
* * *
47185897 ACACCGTTAAAAGTACAGGTCTA
63 GCGCCGCTAAAAGTACAGGTCTA
* * * * *
47185920 TAGCGGCATTTTTTATAAATGCGCCGCTAAAAGTACAGGTCTATAGTGGCGTTTTTTATAAAAGC
1 TAGCGGCGTTTTATA-AAAAGCGCCGCTAAAAGTACAGGTCTATAGCGGCGTTTTTTAAAAAAGC
* *
47185985 GCCGCT-AAAGTTCTTGGTCTA
65 GCCGCTAAAAGTAC-AGGTCTA
* * * * * * * *
47186006 TAGCTGCGTTTTTTAAAAAAAGCGCCGGTAAAGGTCCTGGTCTTTAGCGGCGCTTTTATAAAAAA
1 TAGCGGCG--TTTTATAAAAAGCGCCGCTAAAAGTACAGGTCTATAGCGGCG-TTTTTTAAAAAA
47186071 CGCTGCGAAC
Statistics
Matches: 196, Mismatches: 33, Indels: 18
0.79 0.13 0.07
Matches are distributed among these distances:
85 6 0.03
86 33 0.17
87 90 0.46
88 59 0.30
89 8 0.04
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (85 bp):
TAGCGGCGTTTTATAAAAAGCGCCGCTAAAAGTACAGGTCTATAGCGGCGTTTTTTAAAAAAGCG
CCGCTAAAAGTACAGGTCTA
Found at i:47186048 original size:130 final size:132
Alignment explanation
Indices: 47185745--47186056 Score: 445
Period size: 130 Copynumber: 2.4 Consensus size: 132
47185735 CTGGGCAAAT
*
47185745 TAGCGGCGTTTTTT-AAAAAAGCGCCGCTAAAAGTACAGGTCTATAGCGGCGTTTCTTTACAAAA
1 TAGCGGCGTTTTTTAAAAAAAGCGCCGCTAAAAGTACAGGTCTATAGCGGCATTTCTTTACAAAA
47185809 AGCGCCGCTAAAAGTACAGGTCTATAGCGGCGCTTTTATAAAAAGCGCCGCTAAAGTTCTTGGTC
66 AGCGCCGCTAAAAGTACAGGTCTATAGCGGCGCTTTTATAAAAAGCGCCGCTAAAGTTCTTGGTC
47185874 TA
131 TA
* * * *
47185876 TAGCGGCGCTTTTGTAAAAAAA-CACCGTTAAAAGTACAGGTCTATAGCGGCATTT-TTTA-TAA
1 TAGCGGCG-TTTTTTAAAAAAAGCGCCGCTAAAAGTACAGGTCTATAGCGGCATTTCTTTACAAA
* * *
47185938 ATGCGCCGCTAAAAGTACAGGTCTATAGTGGCG-TTTTTTATAAAAGCGCCGCTAAAGTTCTTGG
65 AAGCGCCGCTAAAAGTACAGGTCTATAGCGGCGCTTTTATA-AAAAGCGCCGCTAAAGTTCTTGG
47186002 TCTA
129 TCTA
* * * * * *
47186006 TAGCTGCGTTTTTTAAAAAAAGCGCCGGTAAAGGTCCTGGTCTTTAGCGGC
1 TAGCGGCGTTTTTTAAAAAAAGCGCCGCTAAAAGTACAGGTCTATAGCGGC
47186057 GCTTTTATAA
Statistics
Matches: 161, Mismatches: 16, Indels: 9
0.87 0.09 0.05
Matches are distributed among these distances:
129 18 0.11
130 90 0.56
131 12 0.07
132 35 0.22
133 6 0.04
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (132 bp):
TAGCGGCGTTTTTTAAAAAAAGCGCCGCTAAAAGTACAGGTCTATAGCGGCATTTCTTTACAAAA
AGCGCCGCTAAAAGTACAGGTCTATAGCGGCGCTTTTATAAAAAGCGCCGCTAAAGTTCTTGGTC
TA
Found at i:47198348 original size:40 final size:40
Alignment explanation
Indices: 47198251--47198434 Score: 178
Period size: 40 Copynumber: 4.6 Consensus size: 40
47198241 TTGAATGCTG
* * * *
47198251 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
** * *
47198290 ATCCGGACTAAGAT-CCGAAGGTATTTGTGTGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * **
47198331 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACCAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
47198371 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
47198411 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
47198435 GAATGAGTTA
Statistics
Matches: 119, Mismatches: 20, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
39 1 0.01
40 109 0.92
41 9 0.08
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:47198455 original size:39 final size:39
Alignment explanation
Indices: 47198331--47198481 Score: 117
Period size: 40 Copynumber: 3.8 Consensus size: 39
47198321 AGTTATTAAT
* ** * * *
47198331 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATAC-CAAT
1 TCCGGGTTAAGTCCCGAAGG-CATTGAACGAG-TTCTAAAA
** *
47198371 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTTTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GAACGAGTTCTAAAA
* **
47198411 TCCGGGTTAAGTCCCGAAGGCATTGAATGAGTTACTATGA
1 TCCGGGTTAAGTCCCGAAGGCATTGAACGAGTT-CTAAAA
* *
47198451 -CCGGGCTATGTCCCGAAGGCACTTGAACGAG
1 TCCGGGTTAAGTCCCGAAGGCA-TTGAACGAG
47198482 GAGCTATATC
Statistics
Matches: 93, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
39 29 0.31
40 64 0.69
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGAACGAGTTCTAAAA
Found at i:47201488 original size:48 final size:48
Alignment explanation
Indices: 47201364--47201898 Score: 948
Period size: 48 Copynumber: 11.1 Consensus size: 48
47201354 GCGGAAATTG
47201364 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-AT
*
47201414 ATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
47201462 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-AT
*
47201512 ATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
47201560 ATGTATGAGATATGTATATGTGGT-AAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
47201607 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
47201655 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
47201703 ATGTATGAGATAAGTATATGTGGTAAAG-CGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
* *
47201750 ATGTATGAGATAAGTATATGTGGTAAAGCCGAATGGCTAATGGGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
* *
47201798 ATGTATGAGATAAGTATATGTGGTAAAGCCGAATGGCTAATGGGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
47201846 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
47201894 ATGTA
1 ATGTA
47201899 GGCGATGTGT
Statistics
Matches: 472, Mismatches: 9, Indels: 10
0.96 0.02 0.02
Matches are distributed among these distances:
47 94 0.20
48 284 0.60
49 6 0.01
50 88 0.19
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.31
Consensus pattern (48 bp):
ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
Found at i:47201678 original size:95 final size:96
Alignment explanation
Indices: 47201364--47201898 Score: 948
Period size: 95 Copynumber: 5.6 Consensus size: 96
47201354 GCGGAAATTG
*
47201364 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATGT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGAGATATGT
47201429 ATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
64 ATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
47201462 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATGT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGAGATATGT
47201527 ATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
64 ATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
47201560 ATGTATGAGATATGTATATGTGGT-AAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTAT
47201624 ATGTGGTAAAGCCGAATGGCTAATGTGAAAT
66 ATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
47201655 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATAAGTAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTAT
47201720 ATGTGGTAAAG-CGAATGGCTAATGTGAAAT
66 ATGTGGTAAAGCCGAATGGCTAATGTGAAAT
* * *
47201750 ATGTATGAGATAAGTATATGTGGTAAAGCCGAATGGCTAATGGGAAATATGTATGAGATAAGTAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTAT
*
47201815 ATGTGGTAAAGCCGAATGGCTAATGGGAAAT
66 ATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
47201846 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
47201899 GGCGATGTGT
Statistics
Matches: 427, Mismatches: 8, Indels: 6
0.97 0.02 0.01
Matches are distributed among these distances:
95 166 0.39
96 120 0.28
97 19 0.04
98 122 0.29
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.31
Consensus pattern (96 bp):
ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTAT
ATGTGGTAAAGCCGAATGGCTAATGTGAAAT
Found at i:47201735 original size:143 final size:144
Alignment explanation
Indices: 47201364--47201898 Score: 948
Period size: 143 Copynumber: 3.7 Consensus size: 144
47201354 GCGGAAATTG
*
47201364 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATGT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGAGATATGT
47201429 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGA
64 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGA
47201494 ATGGCTAATGTGAAATAT
129 ATGGCTAATGTG-AA-AT
*
47201512 ATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTAT
47201577 ATGTGGT-AAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAAT
66 ATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAAT
47201641 GGCTAATGTGAAAT
131 GGCTAATGTGAAAT
*
47201655 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATAAGTAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTAT
*
47201720 ATGTGGTAAAG-CGAATGGCTAATGTGAAATATGTATGAGATAAGTATATGTGGTAAAGCCGAAT
66 ATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAAT
*
47201784 GGCTAATGGGAAAT
131 GGCTAATGTGAAAT
* *
47201798 ATGTATGAGATAAGTATATGTGGTAAAGCCGAATGGCTAATGGGAAATATGTATGAGATATGTAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTAT
*
47201863 ATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
66 ATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
47201899 GGCGATGTGT
Statistics
Matches: 375, Mismatches: 10, Indels: 8
0.95 0.03 0.02
Matches are distributed among these distances:
143 210 0.56
144 28 0.07
145 67 0.18
146 25 0.07
147 2 0.01
148 43 0.11
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.31
Consensus pattern (144 bp):
ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTAT
ATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAAT
GGCTAATGTGAAAT
Found at i:47201939 original size:191 final size:191
Alignment explanation
Indices: 47201364--47201926 Score: 871
Period size: 191 Copynumber: 2.9 Consensus size: 191
47201354 GCGGAAATTG
* *
47201364 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATGT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG-GGAA-ATATGTATGAGATATGT
47201429 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGA
64 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGA
* * * * *
47201494 ATGGCTAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAA
129 ATGGCTAATGTG-AA-ATATGTATGAGATGTGTGTATATTGT-AAGCCGAATGGCTAATGTGAAA
47201559 T
191 T
*
47201560 ATGTATGAGATATGTATATGTGGT-AAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGGGAAATATGTATGAGATATGTAT
47201624 ATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAAT
66 ATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAAT
** * * *
47201689 GGCTAATGTGAAATATGTATGAGATAAGTATATGTGGTAAAG-CGAATGGCTAATGTGAAAT
131 GGCTAATGTGAAATATGTATGAGATGTGTGTATATTGT-AAGCCGAATGGCTAATGTGAAAT
* *
47201750 ATGTATGAGATAAGTATATGTGGTAAAGCCGAATGGCTAATGGGAAATATGTATGAGATAAGTAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGGGAAATATGTATGAGATATGTAT
*
47201815 ATGTGGTAAAGCCGAATGGCTAATGGGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAAT
66 ATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAAT
* * * *
47201880 GGCTAGTGTGAAATATGTAGGCGATGTGTGTATATTGT-GGCCGAATG
131 GGCTAATGTGAAATATGTATGAGATGTGTGTATATTGTAAGCCGAATG
47201927 ACCAAATGTG
Statistics
Matches: 347, Mismatches: 18, Indels: 10
0.93 0.05 0.03
Matches are distributed among these distances:
189 1 0.00
190 48 0.14
191 160 0.46
192 2 0.01
193 93 0.27
194 2 0.01
195 17 0.05
196 24 0.07
ACGTcount: A:0.35, C:0.06, G:0.28, T:0.31
Consensus pattern (191 bp):
ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGGGAAATATGTATGAGATATGTAT
ATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAAT
GGCTAATGTGAAATATGTATGAGATGTGTGTATATTGTAAGCCGAATGGCTAATGTGAAAT
Found at i:47202190 original size:37 final size:37
Alignment explanation
Indices: 47202045--47202189 Score: 220
Period size: 37 Copynumber: 3.9 Consensus size: 37
47202035 GGAAATATAT
*
47202045 TCCGGGTAAGACCCGATGACTACGTGTGGAAATATAT-
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGAT-TATG
47202082 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
47202119 TCCGGGTAAGACTCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* **
47202156 TCCGGGTAAGACCCGATAACTTTGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
47202190 TCATCTGAGC
Statistics
Matches: 100, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
36 3 0.03
37 97 0.97
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:47203504 original size:40 final size:40
Alignment explanation
Indices: 47203447--47203874 Score: 653
Period size: 40 Copynumber: 10.8 Consensus size: 40
47203437 GAGAGTTATA
*
47203447 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGA
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
* ** *
47203487 TGTATCCGGGCTAAGTCCCGAAGAGCATTTATGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
*
47203527 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGA
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
* * *
47203567 TGTATCCGGGCTAAGTCCCGAAGAGCATTTGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
* *
47203607 TATATCCGGGCTAAGTCCCGAAGAGCATTTGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
* *
47203647 TATATCCGGGCTAAGTCCCGAAGAGCATTCGCGCTAGTGA
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
* * *
47203687 TGTATCCGGGCTAAGTCCCGAAGAGCATTTGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
*
47203727 TATATCCGGGCTAAGTCCCGAAGAGCATTTGTGCTAGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
*
47203767 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGA
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
* *
47203807 TGTATCCGGGCTAAGTCCCGAAGAGCATT-GTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
*
47203846 TATATCCGGGCTAAGTCTC-AAGAGCATTC
1 TATATCCGGGCTAAGTCCCGAAGAGCATTC
47203875 AGGGTTAAGT
Statistics
Matches: 354, Mismatches: 33, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
38 9 0.03
39 25 0.07
40 320 0.90
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (40 bp):
TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
Found at i:47203662 original size:120 final size:120
Alignment explanation
Indices: 47203449--47203873 Score: 764
Period size: 120 Copynumber: 3.6 Consensus size: 120
47203439 GAGTTATATA
* * * *
47203449 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCA
1 TATCCGGGCTAAGTCCCGAAGAGCATTTGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGAGCA
*
47203514 TTTATGCTGGTGTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
66 TTTGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
47203569 TATCCGGGCTAAGTCCCGAAGAGCATTTGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGAGCA
1 TATCCGGGCTAAGTCCCGAAGAGCATTTGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGAGCA
*
47203634 TTTGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGAGCATTCGCGCTAGTGATG
66 TTTGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
47203689 TATCCGGGCTAAGTCCCGAAGAGCATTTGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGAGCA
1 TATCCGGGCTAAGTCCCGAAGAGCATTTGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGAGCA
*
47203754 TTTGTGCTAGTGTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
66 TTTGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
*
47203809 TATCCGGGCTAAGTCCCGAAGAGCA-TTGTGCTGGTGTTATATCCGGGCTAAGTCTC-AAGAGCA
1 TATCCGGGCTAAGTCCCGAAGAGCATTTGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGAGCA
47203872 TT
66 TT
47203874 CAGGGTTAAG
Statistics
Matches: 296, Mismatches: 9, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
118 9 0.03
119 30 0.10
120 257 0.87
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (120 bp):
TATCCGGGCTAAGTCCCGAAGAGCATTTGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGAGCA
TTTGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
Found at i:47204160 original size:25 final size:25
Alignment explanation
Indices: 47204110--47204160 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
47204100 TGTGTAACAA
* *
47204110 CAAATGAATAGGGGCACTATGTGTG
1 CAAATGAATAGAGGCACTATGAGTG
*
47204135 CAAATGAGTAGAGGCACTGA-GAGTG
1 CAAATGAATAGAGGCACT-ATGAGTG
47204160 C
1 C
47204161 GAGTTCTTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
25 21 0.95
26 1 0.05
ACGTcount: A:0.33, C:0.14, G:0.33, T:0.20
Consensus pattern (25 bp):
CAAATGAATAGAGGCACTATGAGTG
Found at i:47204229 original size:29 final size:28
Alignment explanation
Indices: 47204157--47204244 Score: 97
Period size: 28 Copynumber: 3.1 Consensus size: 28
47204147 GGCACTGAGA
* *
47204157 GTGCGAGTTCTTCAACTGAGCACTATGT
1 GTGCGAGTTCTTTAATTGAGCACTATGT
**
47204185 GTGCGAGATT-GGTAATTGAGGCACTATGT
1 GTGCGAG-TTCTTTAATTGA-GCACTATGT
* *
47204214 GTGCGAGTTCTTTAATCGAGCGCTATGT
1 GTGCGAGTTCTTTAATTGAGCACTATGT
47204242 GTG
1 GTG
47204245 TGAAATCAGT
Statistics
Matches: 49, Mismatches: 8, Indels: 6
0.78 0.13 0.10
Matches are distributed among these distances:
28 25 0.51
29 24 0.49
ACGTcount: A:0.20, C:0.16, G:0.31, T:0.33
Consensus pattern (28 bp):
GTGCGAGTTCTTTAATTGAGCACTATGT
Found at i:47207761 original size:95 final size:94
Alignment explanation
Indices: 47207588--47208154 Score: 950
Period size: 95 Copynumber: 6.0 Consensus size: 94
47207578 TGATGTATTG
* *
47207588 GAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAATATATATATGAGATATGTATGTGTG
1 GAGATA-GTATATGTGGTAAAGCCGAATGGCTAATGTGAA-ATATGTATGAGATATGTATATGTG
*
47207653 GTAAAGCCGAATGGCTAATGTGAAAATATATAT
64 GTAAAG-CGAATGGCTAATGTG-AAATATGTAT
47207686 GAGATA-TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
1 GAGATAGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
47207750 AAAGCCGAATGGCTAATGTGAAATATGTAT
66 AAAG-CGAATGGCTAATGTGAAATATGTAT
47207780 GAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AATA--TATGAGATATGTATATGTGG
1 GAGATA-GTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGG
47207842 TAAAGCGAATGGCTAATGTGAAATATGTAT
65 TAAAGCGAATGGCTAATGTGAAATATGTAT
47207872 GAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGG
1 GAGATA-GTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGG
47207937 TAAAGCGAATGGCTAATGTGAAATATGTAT
65 TAAAGCGAATGGCTAATGTGAAATATGTAT
47207967 GAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAATATG-ATGAGATATGTATATGTG
1 GAGATA-GTATATGTGGTAAAGCCGAATGGCTAATGTG-AAATATGTATGAGATATGTATATGTG
47208031 GTAAAGCCGAATGGC--ATGTGAAATATGTAT
64 GTAAAG-CGAATGGCTAATGTGAAATATGTAT
47208061 GAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGG
1 GAGATA-GTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGG
*
47208126 TAAAGCGAATGGCTAGTGTGAAATATGTA
65 TAAAGCGAATGGCTAATGTGAAATATGTA
47208155 GGCGATGTGT
Statistics
Matches: 455, Mismatches: 4, Indels: 23
0.94 0.01 0.05
Matches are distributed among these distances:
92 63 0.14
93 44 0.10
94 92 0.20
95 173 0.38
96 77 0.17
98 6 0.01
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.31
Consensus pattern (94 bp):
GAGATAGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
AAAGCGAATGGCTAATGTGAAATATGTAT
Found at i:47207763 original size:48 final size:48
Alignment explanation
Indices: 47207588--47208154 Score: 994
Period size: 48 Copynumber: 12.0 Consensus size: 48
47207578 TGATGTATTG
*
47207588 GAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAATATATATAT
1 GAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA-ATATGTAT
* *
47207637 GAGATATGTATGTGTGGTAAAGCCGAATGGCTAATGTGAAAATATATAT
1 GAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AAATATGTAT
47207686 GAGATA--TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTAT
1 GAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTAT
47207732 GAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTAT
1 GAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTAT
47207780 GAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AATA--TAT
1 GAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTAT
47207825 GAGATATGTATATGTGGTAAAG-CGAATGGCTAATGTGAAATATGTAT
1 GAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTAT
47207872 GAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTAT
1 GAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTAT
47207920 GAGATATGTATATGTGGTAAAG-CGAATGGCTAATGTGAAATATGTAT
1 GAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTAT
47207967 GAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAATATG-AT
1 GAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AAATATGTAT
47208015 GAGATATGTATATGTGGTAAAGCCGAATGGC--ATGTGAAATATGTAT
1 GAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTAT
47208061 GAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTAT
1 GAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTAT
*
47208109 GAGATATGTATATGTGGTAAAG-CGAATGGCTAGTGTGAAATATGTA
1 GAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
47208155 GGCGATGTGT
Statistics
Matches: 502, Mismatches: 4, Indels: 26
0.94 0.01 0.05
Matches are distributed among these distances:
44 15 0.03
45 36 0.07
46 53 0.11
47 128 0.25
48 210 0.42
49 58 0.12
50 2 0.00
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.31
Consensus pattern (48 bp):
GAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTAT
Found at i:47208023 original size:235 final size:235
Alignment explanation
Indices: 47207588--47208154 Score: 984
Period size: 235 Copynumber: 2.4 Consensus size: 235
47207578 TGATGTATTG
* *
47207588 GAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAATATATATATGAGATATGTATGTGTG
1 GAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA-ATATGTATGAGATATGTATATGTG
*
47207653 GTAAAGCCGAATGGCTAATGTGAAAATATATATGAGATATATATGTGGTAAAGCCGAATGGCTAA
65 GTAAAGCCGAATGGCTAATGTG-AAATATGTATGAGATATATATGTGGTAAAGCCGAATGGCTAA
47207718 TGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
129 TGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
47207783 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AATA-TAT
194 ATATGTATATGTGGTAAAGCCGAATGGC--ATGTGAAATAGTAT
47207825 GAGATATGTATATGTGGTAAAG-CGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGG
1 GAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGG
47207889 TAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAG-CGAATGGCTAA
66 TAAAGCCGAATGGCTAATGTGAAATATGTATGAGATA--TATATGTGGTAAAGCCGAATGGCTAA
47207953 TGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAATATG-ATGA
129 TGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AAATATGTATGA
47208017 GATATGTATATGTGGTAAAGCCGAATGGCATGTGAAATATGTAT
193 GATATGTATATGTGGTAAAGCCGAATGGCATGTGAAATA-GTAT
47208061 GAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGG
1 GAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGG
*
47208126 TAAAG-CGAATGGCTAGTGTGAAATATGTA
66 TAAAGCCGAATGGCTAATGTGAAATATGTA
47208155 GGCGATGTGT
Statistics
Matches: 319, Mismatches: 4, Indels: 15
0.94 0.01 0.04
Matches are distributed among these distances:
233 5 0.02
234 19 0.06
235 140 0.44
236 86 0.27
237 69 0.22
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.31
Consensus pattern (235 bp):
GAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGG
TAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATATATGTGGTAAAGCCGAATGGCTAATG
TGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
ATGTATATGTGGTAAAGCCGAATGGCATGTGAAATAGTAT
Found at i:47220273 original size:27 final size:27
Alignment explanation
Indices: 47220231--47220294 Score: 74
Period size: 27 Copynumber: 2.4 Consensus size: 27
47220221 TATGGGTCAT
* * *
47220231 AAATACCCTTGATTTGCAAAATTACTA
1 AAATACCCCTGATTTGCAAAATGACCA
* * *
47220258 AAATACCCCTGGTTTGTAAAATGACCG
1 AAATACCCCTGATTTGCAAAATGACCA
47220285 AAATACCCCT
1 AAATACCCCT
47220295 ATAGAGAAAA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.38, C:0.23, G:0.11, T:0.28
Consensus pattern (27 bp):
AAATACCCCTGATTTGCAAAATGACCA
Found at i:47224947 original size:27 final size:27
Alignment explanation
Indices: 47224905--47224967 Score: 99
Period size: 27 Copynumber: 2.3 Consensus size: 27
47224895 GATGGGTCAT
47224905 AAATACCCCCGATTTACAAAATTACCA
1 AAATACCCCCGATTTACAAAATTACCA
* * *
47224932 AAATACCCTCGGTTTACAAAATTATCA
1 AAATACCCCCGATTTACAAAATTACCA
47224959 AAATACCCC
1 AAATACCCC
47224968 TAGTTTGTAA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.43, C:0.29, G:0.05, T:0.24
Consensus pattern (27 bp):
AAATACCCCCGATTTACAAAATTACCA
Found at i:47227745 original size:27 final size:26
Alignment explanation
Indices: 47227708--47227762 Score: 74
Period size: 27 Copynumber: 2.1 Consensus size: 26
47227698 AGCATAGCTG
*
47227708 CCAGAACAGATATTCTGACAGAGTCA
1 CCAGAACAGATATTCTGACAGAGCCA
* *
47227734 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATTCTGACAGAGCCA
47227761 CC
1 CC
47227763 CTGAATAGAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
26 5 0.20
27 20 0.80
ACGTcount: A:0.35, C:0.25, G:0.22, T:0.18
Consensus pattern (26 bp):
CCAGAACAGATATTCTGACAGAGCCA
Found at i:47227787 original size:28 final size:29
Alignment explanation
Indices: 47227742--47227822 Score: 98
Period size: 28 Copynumber: 2.9 Consensus size: 29
47227732 CACCAGATAC
* *
47227742 AGATA-TTGTGGCAGAGCCACCCTG-AAT
1 AGATATTTGTGGCATAGCCACCCAGAAAT
* *
47227769 AGATGTTTGTGGCTTAGCCA-CCAGAAAT
1 AGATATTTGTGGCATAGCCACCCAGAAAT
47227797 AGATATTTGTGGCATAGCCA-CCAGAA
1 AGATATTTGTGGCATAGCCACCCAGAA
47227823 CGCTTCCTCC
Statistics
Matches: 46, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
27 7 0.15
28 39 0.85
ACGTcount: A:0.31, C:0.20, G:0.25, T:0.25
Consensus pattern (29 bp):
AGATATTTGTGGCATAGCCACCCAGAAAT
Found at i:47227986 original size:27 final size:26
Alignment explanation
Indices: 47227925--47227988 Score: 74
Period size: 26 Copynumber: 2.4 Consensus size: 26
47227915 TAAAATTAAC
* *
47227925 CCTAGGGGTATAATGGTCATTTTACA
1 CCTAAGGGTATAATGGTAATTTTACA
* *
47227951 CCTAGGGGTATAATGGTAATTTTTATA
1 CCTAAGGGTATAATGGTAA-TTTTACA
*
47227978 CTTAAGGGTAT
1 CCTAAGGGTAT
47227989 TTTTAGTAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
26 18 0.55
27 15 0.45
ACGTcount: A:0.28, C:0.11, G:0.23, T:0.38
Consensus pattern (26 bp):
CCTAAGGGTATAATGGTAATTTTACA
Found at i:47230011 original size:27 final size:25
Alignment explanation
Indices: 47229979--47230130 Score: 116
Period size: 25 Copynumber: 6.0 Consensus size: 25
47229969 GTACATGTAT
47229979 GCTCATACGAGCTATGAATCGGTATA
1 GCTCATACGAGCTATGAATCGGTA-A
*
47230005 TGCTCATATGAGCTATGAATCGGTATA
1 -GCTCATACGAGCTATGAATCGGTA-A
* * *
47230032 -CTC-TCACGAGCTGTAAATCAGTAA
1 GCTCAT-ACGAGCTATGAATCGGTAA
* * *
47230056 TCTTATACGAGCTGA-GAATCGGCAA
1 GCTCATACGAGCT-ATGAATCGGTAA
*
47230081 GCTCTTACGAGC--TGAATATCGGTAA
1 GCTCATACGAGCTATG-A-ATCGGTAA
* *
47230106 GCTCATACGAGCTAAGAATTGGTAA
1 GCTCATACGAGCTATGAATCGGTAA
47230131 TCCCTAATGA
Statistics
Matches: 99, Mismatches: 17, Indels: 20
0.73 0.12 0.15
Matches are distributed among these distances:
23 1 0.01
24 3 0.03
25 67 0.68
26 2 0.02
27 26 0.26
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (25 bp):
GCTCATACGAGCTATGAATCGGTAA
Found at i:47230075 original size:50 final size:50
Alignment explanation
Indices: 47230006--47230130 Score: 137
Period size: 50 Copynumber: 2.5 Consensus size: 50
47229996 ATCGGTATAT
* *
47230006 GCTCATATGAGCTATGAATCGGTATA-CTCTCACGAGCTGTAA-ATCAGTAA
1 GCTCATACGAGCTAAGAATCGGTA-AGCTCTCACGAGCTG-AATATCAGTAA
* * * * * *
47230056 TCTTATACGAGCTGAGAATCGGCAAGCTCTTACGAGCTGAATATCGGTAA
1 GCTCATACGAGCTAAGAATCGGTAAGCTCTCACGAGCTGAATATCAGTAA
*
47230106 GCTCATACGAGCTAAGAATTGGTAA
1 GCTCATACGAGCTAAGAATCGGTAA
47230131 TCCCTAATGA
Statistics
Matches: 60, Mismatches: 13, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
49 3 0.05
50 57 0.95
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.26
Consensus pattern (50 bp):
GCTCATACGAGCTAAGAATCGGTAAGCTCTCACGAGCTGAATATCAGTAA
Found at i:47239393 original size:11 final size:12
Alignment explanation
Indices: 47239366--47239391 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
47239356 GTAATAGTGC
47239366 AAATGTTATGAA
1 AAATGTTATGAA
47239378 AAATGTTATGAA
1 AAATGTTATGAA
47239390 AA
1 AA
47239392 TGCAATCTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.54, C:0.00, G:0.15, T:0.31
Consensus pattern (12 bp):
AAATGTTATGAA
Found at i:47243795 original size:40 final size:39
Alignment explanation
Indices: 47243758--47243975 Score: 235
Period size: 40 Copynumber: 5.5 Consensus size: 39
47243748 ATATCCGGAC
47243758 TAAGATCCGAAGGCATTTGTGCGAGATAC-AAATTCCGGGT
1 TAAG-TCCGAAGGCATTTGTGCGAGATACTAAA-TCCGGGT
* *
47243798 TAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGT
1 TAAG-TCCGAAGGCATTTGTGCGAGATACTAAATCCGGGT
* *
47243838 TAAGTCCCGAAGGCATTCGTGCGA-ATTATTAAATCCGGGT
1 TAAGT-CCGAAGGCATTTGTGCGAGA-TACTAAATCCGGGT
* * *
47243878 TAAGTCCCGAAGGCATTGGTGCGAGTTATTAAATCCGGGT
1 TAAGT-CCGAAGGCATTTGTGCGAGATACTAAATCCGGGT
* * * *
47243918 TAAGTCCCGAAGGCA-TTGTGTGAGTTACTAAAACCGGGC
1 TAAGT-CCGAAGGCATTTGTGCGAGATACTAAATCCGGGT
*
47243957 TATGTCCCGAAGGCATTTG
1 TAAGT-CCGAAGGCATTTG
47243976 AACGAGGAGC
Statistics
Matches: 158, Mismatches: 15, Indels: 10
0.86 0.08 0.05
Matches are distributed among these distances:
39 34 0.22
40 121 0.77
41 3 0.02
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.26
Consensus pattern (39 bp):
TAAGTCCGAAGGCATTTGTGCGAGATACTAAATCCGGGT
Found at i:47243927 original size:120 final size:120
Alignment explanation
Indices: 47243711--47243973 Score: 318
Period size: 120 Copynumber: 2.2 Consensus size: 120
47243701 TTGAATGCTG
* * *
47243711 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
* *
47243775 TGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
66 GGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACTAAA
* * * **
47243831 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAA-TTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAAGTGAATAAATCCGGACTAAGAT-CCGAAGGCAT
* * * * *
47243894 TGGTGCGAGTTATTAAA-TCCGGGTTAAGTCCCGAAGGCATTGTGTGAGTTACTAAA
65 TGGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
* *
47243950 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
47243974 TGAACGAGGA
Statistics
Matches: 122, Mismatches: 18, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
119 38 0.31
120 73 0.60
121 11 0.09
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
GGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:47251571 original size:120 final size:120
Alignment explanation
Indices: 47251355--47251617 Score: 293
Period size: 120 Copynumber: 2.2 Consensus size: 120
47251345 TTGAATGCTG
* * *
47251355 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
* * *
47251419 TGTGCGAGATACAAGTTCCGGGTTAAGCCCCGAAGGCCTT-TGTACGAGATACTAAA
66 CGTGCGAGATACAAGATCCGGGTTAAGCCCCGAAGGCATTGTGT--GAGATACTAAA
* * * **
47251475 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAA-TTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAAGTGAATAAATCCGGACTAAGAT-CCGAAGGCAT
* * * *
47251538 TCGTGCGAGTTATTAA-ATCCGGGTTAAGTCCCGAAGGCATTGTGTGAGTTACTAAA
65 TCGTGCGAGATA-CAAGATCCGGGTTAAGCCCCGAAGGCATTGTGTGAGATACTAAA
* * *
47251594 ACCAGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
47251618 TGAACGAGGA
Statistics
Matches: 120, Mismatches: 19, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
119 31 0.26
120 76 0.63
121 13 0.11
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGATACAAGATCCGGGTTAAGCCCCGAAGGCATTGTGTGAGATACTAAA
Found at i:47251608 original size:39 final size:40
Alignment explanation
Indices: 47251355--47251617 Score: 246
Period size: 40 Copynumber: 6.6 Consensus size: 40
47251345 TTGAATGCTG
* * * * * *
47251355 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
** * * * *
47251395 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATA-CAAGT
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAA-A
* * * * * *
47251435 TCCGGGTTAAGCCCCGAAGGCCTTTGTACGAGATACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
47251475 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAATTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
47251515 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* *
47251555 TCCGGGTTAAGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * * *
47251594 ACCAGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
47251618 TGAACGAGGA
Statistics
Matches: 190, Mismatches: 28, Indels: 11
0.83 0.12 0.05
Matches are distributed among these distances:
39 34 0.18
40 146 0.77
41 10 0.05
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:47263161 original size:40 final size:40
Alignment explanation
Indices: 47263074--47263331 Score: 371
Period size: 40 Copynumber: 6.5 Consensus size: 40
47263064 TGGATGATAA
* *
47263074 CCGGGCTAAGTCCCGAAGGCATTTTGTGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCA-TTTGTGCGAGTTACTA-TAT
* * *
47263115 CTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
47263155 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
47263195 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
47263235 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
47263275 CCGGGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
47263314 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
47263332 TACTTGGATT
Statistics
Matches: 200, Mismatches: 15, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
38 15 0.08
39 15 0.08
40 150 0.75
41 20 0.10
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:47270611 original size:40 final size:40
Alignment explanation
Indices: 47270562--47270702 Score: 160
Period size: 40 Copynumber: 3.5 Consensus size: 40
47270552 CGGATGTAAC
47270562 AACCAGCACGAATGCCTTCGGGACTTAACCCAGTTATAAT
1 AACCAGCACGAATGCCTTCGGGACTTAACCCAGTTATAAT
* *
47270602 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCAGCACGAATGCCTTCGGGACTTAACCCAGTTATAAT
* ** * * *
47270642 AACTAGCAC-AATTGCCTTC-GGATCTTAGTCCGGATATAGT
1 AACCAGCACGAA-TGCCTTCGGGA-CTTAACCCAGTTATAAT
* *
47270682 AACTAGCACAAATGCCTTCGG
1 AACCAGCACGAATGCCTTCGG
47270703 ATCTTAGTCC
Statistics
Matches: 89, Mismatches: 8, Indels: 7
0.86 0.08 0.07
Matches are distributed among these distances:
39 5 0.06
40 81 0.91
41 3 0.03
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (40 bp):
AACCAGCACGAATGCCTTCGGGACTTAACCCAGTTATAAT
Found at i:47270703 original size:40 final size:40
Alignment explanation
Indices: 47270552--47270718 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 40
47270542 GAATTTGGCT
* * * * **
47270552 CGGATGTAACAACCAGCACGAATGCCTTCGGGA-CTTAACC
1 CGGATATAATAACTAGCACAAATGCCTTC-GGATCTTAGTC
* * ** * **
47270592 CAGTTATAATAACCCGCACGAATGCCTTCGGGA-CTTAACC
1 CGGATATAATAACTAGCACAAATGCCTTC-GGATCTTAGTC
* *
47270632 CGGTTATAATAACTAGCACAATTGCCTTCGGATCTTAGTC
1 CGGATATAATAACTAGCACAAATGCCTTCGGATCTTAGTC
*
47270672 CGGATATAGTAACTAGCACAAATGCCTTCGGATCTTAGTC
1 CGGATATAATAACTAGCACAAATGCCTTCGGATCTTAGTC
47270712 CGGATAT
1 CGGATAT
47270719 CATCCGAATA
Statistics
Matches: 111, Mismatches: 15, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
39 3 0.03
40 108 0.97
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.25
Consensus pattern (40 bp):
CGGATATAATAACTAGCACAAATGCCTTCGGATCTTAGTC
Found at i:47272478 original size:27 final size:27
Alignment explanation
Indices: 47272448--47272539 Score: 130
Period size: 27 Copynumber: 3.4 Consensus size: 27
47272438 ATTACCAAAG
*
47272448 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTAAAGAATTACTGTTT
* *
47272475 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTAAAGAATTACTGTTT
* * *
47272502 TACCATCGATTTAAAAAATTACCGTTT
1 TACCCTCGATTTAAAGAATTACTGTTT
47272529 TACCCTCGATT
1 TACCCTCGATT
47272540 GTGAAATTAC
Statistics
Matches: 57, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 57 1.00
ACGTcount: A:0.28, C:0.21, G:0.10, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTAAAGAATTACTGTTT
Found at i:47272601 original size:27 final size:27
Alignment explanation
Indices: 47272571--47272693 Score: 126
Period size: 27 Copynumber: 4.6 Consensus size: 27
47272561 TATAGGGTAG
47272571 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* * *
47272598 AATTACCAAAATACCACTGGTTT-TGA
1 AATTACCAAAATACCCCTAGTTTGTAA
* *
47272624 AATTACCGAAATA-CCCTCAATTTGTAA
1 AATTACCAAAATACCCCT-AGTTTGTAA
* **
47272651 AATTATCAAAATACCCCT-GATTTACAA
1 AATTACCAAAATACCCCTAG-TTTGTAA
*
47272678 AATTACAAAAATACCC
1 AATTACCAAAATACCC
47272694 TTGACTTTCT
Statistics
Matches: 77, Mismatches: 15, Indels: 8
0.77 0.15 0.08
Matches are distributed among these distances:
25 3 0.04
26 17 0.22
27 53 0.69
28 4 0.05
ACGTcount: A:0.43, C:0.22, G:0.07, T:0.28
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTGTAA
Found at i:47272625 original size:80 final size:80
Alignment explanation
Indices: 47272541--47272692 Score: 191
Period size: 80 Copynumber: 1.9 Consensus size: 80
47272531 CCCTCGATTG
* * * **
47272541 TGAAATTACTGAAATACCCT-TATAGGGTAGAATTACCAAAATACCCCT-AGTTTGTAAAATTAC
1 TGAAATTACCGAAATACCCTCAAT-GGGTAAAATTACCAAAATACCCCTGA-TTTACAAAATTAC
*
47272604 CAAAATACCACTGGTTT
64 AAAAATACCACTGGTTT
** *
47272621 TGAAATTACCGAAATACCCTCAATTTGTAAAATTATCAAAATACCCCTGATTTACAAAATTACAA
1 TGAAATTACCGAAATACCCTCAATGGGTAAAATTACCAAAATACCCCTGATTTACAAAATTACAA
47272686 AAATACC
66 AAATACC
47272693 CTTGACTTTC
Statistics
Matches: 61, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
80 58 0.95
81 3 0.05
ACGTcount: A:0.42, C:0.20, G:0.09, T:0.29
Consensus pattern (80 bp):
TGAAATTACCGAAATACCCTCAATGGGTAAAATTACCAAAATACCCCTGATTTACAAAATTACAA
AAATACCACTGGTTT
Found at i:47272628 original size:53 final size:55
Alignment explanation
Indices: 47272571--47272738 Score: 155
Period size: 53 Copynumber: 3.1 Consensus size: 55
47272561 TATAGGGTAG
* * **
47272571 AATTACCAAAATACCCCT-AGTTTGTAAAATTACCAAAATACCACTGGTTT-TGA
1 AATTACCAAAATACCCCTCAATTTGTAAAATTACCAAAATACCACTGATTTACAA
* * *
47272624 AATTACCGAAATA-CCCTCAATTTGTAAAATTATCAAAATACCCCTGATTTACAA
1 AATTACCAAAATACCCCTCAATTTGTAAAATTACCAAAATACCACTGATTTACAA
* * * * * * * *
47272678 AATTACAAAAATACCCTTGACTTTCTAAAAATTA-TAGAAATACCATTGGTTTACAA
1 AATTACCAAAATACCCCTCAATTTGT-AAAATTACCA-AAATACCACTGATTTACAA
47272734 AATTA
1 AATTA
47272739 TTGAAATACC
Statistics
Matches: 93, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
52 4 0.04
53 40 0.43
54 12 0.13
55 9 0.10
56 28 0.30
ACGTcount: A:0.43, C:0.19, G:0.07, T:0.31
Consensus pattern (55 bp):
AATTACCAAAATACCCCTCAATTTGTAAAATTACCAAAATACCACTGATTTACAA
Found at i:47272694 original size:26 final size:25
Alignment explanation
Indices: 47272596--47272721 Score: 65
Period size: 27 Copynumber: 4.7 Consensus size: 25
47272586 CCTAGTTTGT
* * *
47272596 AAAATTACCAAAATACCACTGGTTTT
1 AAAATTACAAAAATACC-CTGATTTC
* ** * *
47272622 GAAATTACCGAAATACCCTCAATTTGT
1 AAAATTACAAAAATACCCT-GATTT-C
47272649 AAAATTATC-AAAATACCCCTGATTTAC
1 AAAATTA-CAAAAATA-CCCTGATTT-C
47272676 AAAATTACAAAAATACCCTTGACTTTC
1 AAAATTACAAAAATACCC-TGA-TTTC
* *
47272703 TAAAAATTATAGAAATACC
1 --AAAATTACAAAAATACC
47272722 ATTGGTTTAC
Statistics
Matches: 80, Mismatches: 11, Indels: 15
0.75 0.10 0.14
Matches are distributed among these distances:
25 2 0.03
26 22 0.28
27 33 0.41
28 8 0.10
29 15 0.19
ACGTcount: A:0.44, C:0.20, G:0.06, T:0.29
Consensus pattern (25 bp):
AAAATTACAAAAATACCCTGATTTC
Found at i:47272718 original size:29 final size:27
Alignment explanation
Indices: 47272649--47272756 Score: 103
Period size: 27 Copynumber: 3.9 Consensus size: 27
47272639 CTCAATTTGT
* *
47272649 AAAATTATCA-AAATACCCCTGATTTAC
1 AAAATTAT-AGAAATACCCTTGGTTTAC
* * *
47272676 AAAATTACAAAAATACCCTTGACTTT-C
1 AAAATTATAGAAATACCCTTG-GTTTAC
*
47272703 TAAAAATTATAGAAATACCATTGGTTTAC
1 --AAAATTATAGAAATACCCTTGGTTTAC
*
47272732 AAAATTATTGAAATACCCTTGGTTT
1 AAAATTATAGAAATACCCTTGGTTT
47272757 GTAGATTTAC
Statistics
Matches: 67, Mismatches: 9, Indels: 10
0.78 0.10 0.12
Matches are distributed among these distances:
26 1 0.01
27 41 0.61
28 6 0.09
29 19 0.28
ACGTcount: A:0.43, C:0.17, G:0.07, T:0.33
Consensus pattern (27 bp):
AAAATTATAGAAATACCCTTGGTTTAC
Found at i:47273712 original size:25 final size:25
Alignment explanation
Indices: 47273684--47273753 Score: 115
Period size: 25 Copynumber: 2.8 Consensus size: 25
47273674 AGGAAATGCT
47273684 AAAAGGG-TTATGCCCCAGTTTACCG
1 AAAAGGGCTT-TGCCCCAGTTTACCG
47273709 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
*
47273734 AAAAGGGCTTTGCCTCAGTT
1 AAAAGGGCTTTGCCCCAGTT
47273754 ATTAAAAGAG
Statistics
Matches: 43, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
25 41 0.95
26 2 0.05
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCG
Found at i:47274020 original size:30 final size:31
Alignment explanation
Indices: 47273973--47274053 Score: 132
Period size: 30 Copynumber: 2.7 Consensus size: 31
47273963 CGCTTATAGT
*
47273973 AAAGGCTTC-GACCAGTGATATGATTTATG-
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
47274002 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
47274033 AAAGGCTTCGGCCCAGT-ATAT
1 AAAGGCTTCGGCCCAGTGATAT
47274054 ATCGAGACTG
Statistics
Matches: 49, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
29 9 0.18
30 23 0.47
31 17 0.35
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:47279274 original size:13 final size:13
Alignment explanation
Indices: 47279256--47279291 Score: 63
Period size: 13 Copynumber: 2.8 Consensus size: 13
47279246 TTAAAAATCG
47279256 CACGGCCTTGACA
1 CACGGCCTTGACA
47279269 CACGGCCTTGACA
1 CACGGCCTTGACA
*
47279282 CACGGTCTTG
1 CACGGCCTTG
47279292 TCATATGGCT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.19, C:0.36, G:0.25, T:0.19
Consensus pattern (13 bp):
CACGGCCTTGACA
Found at i:47281133 original size:34 final size:34
Alignment explanation
Indices: 47281090--47281158 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
47281080 CTCGTGAGGA
*
47281090 AGCCTCGTCTTCAAACGTGATTACTAGTATTTTT
1 AGCCTCGTCTCCAAACGTGATTACTAGTATTTTT
47281124 AGCCTCGTCTCCAAACGTGATTACTAGTATTTTT
1 AGCCTCGTCTCCAAACGTGATTACTAGTATTTTT
47281158 A
1 A
47281159 CTCTTTATGA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.25, C:0.22, G:0.14, T:0.39
Consensus pattern (34 bp):
AGCCTCGTCTCCAAACGTGATTACTAGTATTTTT
Found at i:47290690 original size:27 final size:27
Alignment explanation
Indices: 47290653--47290853 Score: 248
Period size: 27 Copynumber: 7.6 Consensus size: 27
47290643 TAAATTGTAC
47290653 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
47290680 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
47290707 TGCACTAAGTGTGCGAAATGA-AATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* *
47290732 ATGCACTAAGTGTGCGAATTGACCATG-
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
47290759 -GCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* *
47290785 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
47290812 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
47290839 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
47290854 GACTCAATAT
Statistics
Matches: 154, Mismatches: 16, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
25 23 0.15
26 22 0.14
27 109 0.71
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:47290779 original size:78 final size:79
Alignment explanation
Indices: 47290654--47290800 Score: 242
Period size: 78 Copynumber: 1.9 Consensus size: 79
47290644 AAATTGTACA
* * * *
47290654 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGT
1 GCACTAAGTGTGCGAATTGACCATG-AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGT
47290719 GCGAAATGAAATGAT
65 GCGAAATGAAATGAT
47290734 GCACTAAGTGTGCGAATTGACCATG-GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTG
1 GCACTAAGTGTGCGAATTGACCATGAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTG
47290798 CGA
66 CGA
47290801 TTTGATTACG
Statistics
Matches: 63, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
78 40 0.63
80 23 0.37
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.29
Consensus pattern (79 bp):
GCACTAAGTGTGCGAATTGACCATGAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTG
CGAAATGAAATGAT
Found at i:47298755 original size:27 final size:27
Alignment explanation
Indices: 47298718--47298920 Score: 241
Period size: 27 Copynumber: 7.6 Consensus size: 27
47298708 TAAATTGTAC
*
47298718 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
47298745 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
47298772 TGCACTAAGTGTGCGAAATGA-AATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
*
47298797 ATGCACTAAGTGTGCGAATTGACCATGT
1 A-GCACTAAGTGTGCGAATTGACTATGT
* *
47298825 GGCACTAAGTGTGCGAGATTGATTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* *
47298853 AGCACTAAGTGTGCG-ATTGATTACGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
47298879 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
47298906 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
47298921 GACTCAATAT
Statistics
Matches: 155, Mismatches: 16, Indels: 10
0.86 0.09 0.06
Matches are distributed among these distances:
26 47 0.30
27 85 0.55
28 23 0.15
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:47298813 original size:53 final size:53
Alignment explanation
Indices: 47298718--47298920 Score: 239
Period size: 53 Copynumber: 3.8 Consensus size: 53
47298708 TAAATTGTAC
*
47298718 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGA-TTGACTATGT
* * * *
47298772 TGCACTAAGTGTGCGAAATGA-AATG-ATGCACTAAGTGTGCGAATTGACCATGT
1 AGCACTAAGTGTGCGAATTGACTATGTA-GCACTAAGTGTGCG-ATTGACTATGT
* * * *
47298825 GGCACTAAGTGTGCGAGATTGATTATGTAGCACTAAGTGTGCGATTGATTACGT
1 AGCACTAAGTGTGCGA-ATTGACTATGTAGCACTAAGTGTGCGATTGACTATGT
* * * *
47298879 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCG
47298921 GACTCAATAT
Statistics
Matches: 129, Mismatches: 15, Indels: 11
0.83 0.10 0.07
Matches are distributed among these distances:
52 1 0.01
53 64 0.50
54 46 0.36
55 17 0.13
56 1 0.01
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.30
Consensus pattern (53 bp):
AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGATTGACTATGT
Found at i:47312127 original size:18 final size:18
Alignment explanation
Indices: 47312100--47312153 Score: 54
Period size: 18 Copynumber: 2.9 Consensus size: 18
47312090 TCAACTTCTT
*
47312100 ATAATTATAATGAAAATA
1 ATAATAATAATGAAAATA
** *
47312118 ATAATAATAATTCAATTA
1 ATAATAATAATGAAAATA
47312136 ATAATAACATAATGAAAA
1 ATAAT-A-ATAATGAAAA
47312154 CCTTATTACA
Statistics
Matches: 27, Mismatches: 7, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
18 19 0.70
19 1 0.04
20 7 0.26
ACGTcount: A:0.61, C:0.04, G:0.04, T:0.31
Consensus pattern (18 bp):
ATAATAATAATGAAAATA
Found at i:47313604 original size:810 final size:808
Alignment explanation
Indices: 47312058--47313655 Score: 2734
Period size: 810 Copynumber: 2.0 Consensus size: 808
47312048 CAGAAACATA
* * *
47312058 GAAAAGACATACTATAGTTTAAGAAACCATGTTCAACTTCTTATAATTATAATGAAAATAATAAT
1 GAAAAGACATACTACAGTTTAAAAAACCATGTTCAACTTCTTATAATTACAATGAAAATAATAAT
*
47312123 AATAATTCAATTAATAATAACATAATGAAAACCTTATTACAATCTGATCTGAACACACTTAAAAA
66 AATAATTCAAGTAATAATAACATAATGAAAACCTTATTACAATCTGATCTGAACACACTTAAAAA
* * * *
47312188 GAAATAAAAACTTAATTGCTTAGTAAAAAAACCAAGTCCGAATTATCTTGCTAGCCGGCCACCCA
131 GAAATAAAAACTTAAATGCTTAGAAAAAAAACCAAGTCCGAATTATCTTGCTAGCCAGACACCCA
*
47312253 GAGTCCCTCCAAACATCGAACCTTCTACTGAGCATCACTTGAAAATAAAATAAAAGAGGGGGTGA
196 GAGTCCCTCCAAACATCGAACCTTCTACTGAGCATCACCTGAAAATAAAATAAAAGAGGGGGTGA
47312318 GTCTTCACAAACTCAGTGTGTACAACCCACGATGAAAAACAAGCATTCAAAGAGAAATCATCAAA
261 GTCTTCACAAACTCAGTGTGTACAACCCACGATGAAAAACAAGCATTCAAAGAGAAATCATCAAA
* * * * * **
47312383 CATGCAATGCAATCCCATCCAAATTATCCACGCGCTACACAATAGCTCCATCCCTGGTCACACCA
326 CATGCAATACAATCCAATCCAAATTATCCACGCACTACACAACAGCTACATCCCCCGTCACACCA
47312448 TGTGGGGATATAAATATCAACCCACCCAGCCCACACACCAATGGTAGCCCGGTTGCGAAACTACC
391 TGTGGGGATATAAATATCAACCCACCCAGCCCACACACCAATGGTAGCCCGGTTGCGAAACTACC
* * * *
47312513 TTTATTTACATATTGGGCTTTAAAAGCCGTCGGTGGATCCACGATTGTTATGCAACCAAGCGATC
456 TTAATTTACATATTGGGCTTTAAAAGCCATCGGTGGATCCACAATTGTTAGGCAACCAAGCGATC
*
47312578 CTCATATACTTCCTCTGTTCCATAGTTCCCACCCCATATGCAACCTAAGCAGAACATCATATGTA
521 CTCATATACTTCCTCCGTTCCATAGTTCCCACCCCATATGCAACCTAAGCAGAACATCATATGTA
47312643 TGCATGTCACATCCATAACACTTACATTCAACACCTAGGAGTATTTTGGTCATTTTCGCCCTTAG
586 TGCATGTCACATCCATAACACTTACATTCAACACCTAGGAGTATTTTGGTCATTTTCGCCCTTAG
47312708 AGGCATTTCAGTAATTTTCCCTTAATTTCGGTTTTCACTTACCTTGGTCCATTAACAAGTCCCAC
651 AGGCATTTCAGTAATTTTCCCTTAATTTCGGTTTTCACTTACCTTGGTCCATTAACAAGTCCCAC
* * *
47312773 GAGCTAAGATGAACGAATACTATGCACCAGGTAGGATTCCAGAGAAGAGGAGGTGGGACCGCTTA
716 GAGCTAAGATGAACAAATACTATGCACCAGGTAGGACTCCAGAGAAGAGGAGGTGGGACCCCTTA
47312838 AGTACCAAACATTAGTTGTGGAAACGCG
781 AGTACCAAACATTAGTTGTGGAAACGCG
47312866 GAAAAGACATACTACAGTTTAAAAAACCATGTTCAACTTCTTATAATTACAATGAAAATAATAAT
1 GAAAAGACATACTACAGTTTAAAAAACCATGTTCAACTTCTTATAATTACAATGAAAATAATAAT
* *
47312931 AATAATTCAAGTAATAATAACATAATGAAAACCTTATTACAATCTGATTTGAACACATTTAAAAA
66 AATAATTCAAGTAATAATAACATAATGAAAACCTTATTACAATCTGATCTGAACACACTTAAAAA
*
47312996 GAAATAAAAACTTAAATGCTTAGAAAAAAAAACCAAGTCTGAATTATCTTGCTAGCCAGACACCC
131 GAAATAAAAACTTAAATGCTTAG-AAAAAAAACCAAGTCCGAATTATCTTGCTAGCCAGACACCC
* *
47313061 AGAGTCCCTCCAAACATCTAACCTTCTACTGAGCATCGCCTGAAAATAAAATAAAAGAGGGGGTG
195 AGAGTCCCTCCAAACATCGAACCTTCTACTGAGCATCACCTGAAAATAAAATAAAAGAGGGGGTG
* * *
47313126 AGTTTTCGCAAACTCAGTGTGTACAACCTACGATGAAAAACAAGCATTCAAAGAGAAATCATCAA
260 AGTCTTCACAAACTCAGTGTGTACAACCCACGATGAAAAACAAGCATTCAAAGAGAAATCATCAA
*
47313191 ACATGCAATACAATCCAATCCAAATTATCCATC-CACTACACACCAGCTACATCCCCCGTCACAC
325 ACATGCAATACAATCCAATCCAAATTATCCA-CGCACTACACAACAGCTACATCCCCCGTCACAC
* * * *
47313255 CATGTGGGGATATAAATATCGACTCACCCAGCCCACACACCAAT-GTAGCCCGGTTGCGGAACTG
389 CATGTGGGGATATAAATATCAACCCACCCAGCCCACACACCAATGGTAGCCCGGTTGCGAAACTA
* *
47313319 CCTTCAATATTA-ATTATTTGGCTTTAAAAGCCATCGGTGGATCCACAATTGTTAGGCAACCATG
454 CCTT-AAT-TTACA-TATTGGGCTTTAAAAGCCATCGGTGGATCCACAATTGTTAGGCAACCAAG
47313383 CGATCCTCATATACTTCCTCCGTTCCATAGTTCCCACCCCATATGCAACCTAAGCAGAACATCAT
516 CGATCCTCATATACTTCCTCCGTTCCATAGTTCCCACCCCATATGCAACCTAAGCAGAACATCAT
*
47313448 ATGTATGCATGTCACATCCATAACACTTACATTCAACACCTAGGGGTATTTTGGTCATTTTCGCC
581 ATGTATGCATGTCACATCCATAACACTTACATTCAACACCTAGGAGTATTTTGGTCATTTTCGCC
* *
47313513 CTTAGAGGCATTTTAGTAATTTTCCCTTAATTTTGGTTTTCACTTACCTTGGTCCATTAACAAGT
646 CTTAGAGGCATTTCAGTAATTTTCCCTTAATTTCGGTTTTCACTTACCTTGGTCCATTAACAAGT
* *
47313578 CCCATGAGCTAAGATGAATAAATACTATGCACCAGGTAGGACTCCAGAGAAGAGGAGGTGGGACC
711 CCCACGAGCTAAGATGAACAAATACTATGCACCAGGTAGGACTCCAGAGAAGAGGAGGTGGGACC
47313643 CCTTAAGTACCAA
776 CCTTAAGTACCAA
47313656 GCGCTCCCTA
Statistics
Matches: 741, Mismatches: 44, Indels: 8
0.93 0.06 0.01
Matches are distributed among these distances:
808 168 0.23
809 260 0.35
810 313 0.42
ACGTcount: A:0.36, C:0.24, G:0.15, T:0.26
Consensus pattern (808 bp):
GAAAAGACATACTACAGTTTAAAAAACCATGTTCAACTTCTTATAATTACAATGAAAATAATAAT
AATAATTCAAGTAATAATAACATAATGAAAACCTTATTACAATCTGATCTGAACACACTTAAAAA
GAAATAAAAACTTAAATGCTTAGAAAAAAAACCAAGTCCGAATTATCTTGCTAGCCAGACACCCA
GAGTCCCTCCAAACATCGAACCTTCTACTGAGCATCACCTGAAAATAAAATAAAAGAGGGGGTGA
GTCTTCACAAACTCAGTGTGTACAACCCACGATGAAAAACAAGCATTCAAAGAGAAATCATCAAA
CATGCAATACAATCCAATCCAAATTATCCACGCACTACACAACAGCTACATCCCCCGTCACACCA
TGTGGGGATATAAATATCAACCCACCCAGCCCACACACCAATGGTAGCCCGGTTGCGAAACTACC
TTAATTTACATATTGGGCTTTAAAAGCCATCGGTGGATCCACAATTGTTAGGCAACCAAGCGATC
CTCATATACTTCCTCCGTTCCATAGTTCCCACCCCATATGCAACCTAAGCAGAACATCATATGTA
TGCATGTCACATCCATAACACTTACATTCAACACCTAGGAGTATTTTGGTCATTTTCGCCCTTAG
AGGCATTTCAGTAATTTTCCCTTAATTTCGGTTTTCACTTACCTTGGTCCATTAACAAGTCCCAC
GAGCTAAGATGAACAAATACTATGCACCAGGTAGGACTCCAGAGAAGAGGAGGTGGGACCCCTTA
AGTACCAAACATTAGTTGTGGAAACGCG
Found at i:47314302 original size:31 final size:31
Alignment explanation
Indices: 47314267--47314330 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
47314257 CCTTCTCATA
*
47314267 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTAGGCCGAAGCCT
**
47314298 TTTCATATTTCATATTACTAGGCCGAAGCCT
1 TTTCATATTTCATAACACTAGGCCGAAGCCT
47314329 TT
1 TT
47314331 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.14, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATAACACTAGGCCGAAGCCT
Done.