Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 142 of 362
Found at i:47314642 original size:26 final size:25
Alignment explanation
Indices: 47314539--47314647 Score: 143
Period size: 25 Copynumber: 4.4 Consensus size: 25
47314529 CTGGAGGCCT
*
47314539 AGCCTCTTTTAAT-AACTGGGGC-AA
1 AGCC-CTTTTGATAAACTGGGGCAAA
47314563 AGCCCTTTTGATAAACTGGGGCAAA
1 AGCCCTTTTGATAAACTGGGGCAAA
*
47314588 AGCCCTTTTAATAAACTGGGGCAAA
1 AGCCCTTTTGATAAACTGGGGCAAA
*
47314613 AGCCCTTTTTCGATAAACTGGGGC-AT
1 AGCCC-TTTT-GATAAACTGGGGCAAA
47314639 AGCCCTTTT
1 AGCCCTTTT
47314648 TGCACTTCCT
Statistics
Matches: 77, Mismatches: 4, Indels: 7
0.88 0.05 0.08
Matches are distributed among these distances:
23 7 0.09
24 13 0.17
25 35 0.45
26 10 0.13
27 12 0.16
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.28
Consensus pattern (25 bp):
AGCCCTTTTGATAAACTGGGGCAAA
Found at i:47314741 original size:20 final size:20
Alignment explanation
Indices: 47314695--47314741 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
47314685 TTATGAATAC
47314695 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
47314715 ATAATGTGCATATCATAACA-
1 ATCATGTGCATATCAT-ACAT
47314735 ATCATGT
1 ATCATGT
47314742 ATATCAAATC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 21 0.88
21 3 0.12
ACGTcount: A:0.38, C:0.17, G:0.11, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:47322398 original size:31 final size:31
Alignment explanation
Indices: 47322363--47322426 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
47322353 CCTTTTCGTA
*
47322363 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTAGGCCGAAGCCT
**
47322394 TTTCATATTTCATATTACTAGGCCGAAGCCT
1 TTTCATATTTCATAACACTAGGCCGAAGCCT
47322425 TT
1 TT
47322427 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.14, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATAACACTAGGCCGAAGCCT
Found at i:47322675 original size:24 final size:25
Alignment explanation
Indices: 47322635--47322717 Score: 125
Period size: 25 Copynumber: 3.4 Consensus size: 25
47322625 CTGGAGGCCT
47322635 AGCCTCTTTTAAT-AACTGGGGC-AA
1 AGCC-CTTTTAATAAACTGGGGCAAA
*
47322659 AGCCCTTTTGATAAACTGGGGCAAA
1 AGCCCTTTTAATAAACTGGGGCAAA
*
47322684 AGCCCTTTTAATAAACTGTGGCAAA
1 AGCCCTTTTAATAAACTGGGGCAAA
47322709 AGCCCTTTT
1 AGCCCTTTT
47322718 CGGTAAACTA
Statistics
Matches: 54, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
23 7 0.13
24 13 0.24
25 34 0.63
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.29
Consensus pattern (25 bp):
AGCCCTTTTAATAAACTGGGGCAAA
Found at i:47322732 original size:26 final size:24
Alignment explanation
Indices: 47322635--47322742 Score: 119
Period size: 25 Copynumber: 4.4 Consensus size: 24
47322625 CTGGAGGCCT
*
47322635 AGCCTCTTTTAAT-AACTGGGGCAA
1 AGCC-CTTTTGATAAACTGGGGCAA
47322659 AGCCCTTTTGATAAACTGGGGCAAA
1 AGCCCTTTTGATAAACTGGGGC-AA
* *
47322684 AGCCCTTTTAATAAACTGTGGCAAA
1 AGCCCTTTTGATAAACTGGGGC-AA
* * *
47322709 AGCCCTTTTCGGTAAACTAGGGCAT
1 AGCCCTTTT-GATAAACTGGGGCAA
47322734 AGCCCTTTT
1 AGCCCTTTT
47322743 TGCACTTCCT
Statistics
Matches: 73, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
23 7 0.10
24 13 0.18
25 44 0.60
26 9 0.12
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (24 bp):
AGCCCTTTTGATAAACTGGGGCAA
Found at i:47322738 original size:50 final size:48
Alignment explanation
Indices: 47322634--47322742 Score: 139
Period size: 50 Copynumber: 2.2 Consensus size: 48
47322624 ACTGGAGGCC
*
47322634 TAGCCTCTTTTAATAACTGGGGCAAAGCCCTTTTGATAAACTGGGGCAA
1 TAGCC-CTTTTAATAACTGGGGCAAAGCCCTTTTGATAAACTAGGGCAA
* * *
47322683 AAGCCCTTTTAATAAACTGTGGCAAAAGCCCTTTTCGGTAAACTAGGGC-A
1 TAGCCCTTTTAAT-AACTGGGGC-AAAGCCCTTTT-GATAAACTAGGGCAA
47322733 TAGCCCTTTT
1 TAGCCCTTTT
47322743 TGCACTTCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
48 8 0.15
49 12 0.23
50 21 0.40
51 11 0.21
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.29
Consensus pattern (48 bp):
TAGCCCTTTTAATAACTGGGGCAAAGCCCTTTTGATAAACTAGGGCAA
Found at i:47322813 original size:20 final size:19
Alignment explanation
Indices: 47322786--47322855 Score: 97
Period size: 20 Copynumber: 3.6 Consensus size: 19
47322776 TGCATTATGA
*
47322786 ATAC-ATCATGTGCATACC
1 ATACAATCATGTGCATATC
*
47322804 ATACATATCATATGCATATC
1 ATACA-ATCATGTGCATATC
47322824 ATACAATCATGTGCATATC
1 ATACAATCATGTGCATATC
47322843 ATATCAATCATGT
1 ATA-CAATCATGT
47322856 ATATCAAATC
Statistics
Matches: 46, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
18 4 0.09
19 16 0.35
20 26 0.57
ACGTcount: A:0.37, C:0.21, G:0.09, T:0.33
Consensus pattern (19 bp):
ATACAATCATGTGCATATC
Found at i:47322823 original size:11 final size:11
Alignment explanation
Indices: 47322790--47322846 Score: 52
Period size: 11 Copynumber: 5.6 Consensus size: 11
47322780 TTATGAATAC
*
47322790 ATCATGTGCAT
1 ATCATATGCAT
*
47322801 ACCATA--CAT
1 ATCATATGCAT
47322810 ATCATATGCAT
1 ATCATATGCAT
47322821 ATCATA--CA-
1 ATCATATGCAT
*
47322829 ATCATGTGCAT
1 ATCATATGCAT
47322840 ATCATAT
1 ATCATAT
47322847 CAATCATGTA
Statistics
Matches: 36, Mismatches: 5, Indels: 10
0.71 0.10 0.20
Matches are distributed among these distances:
8 5 0.14
9 10 0.28
10 2 0.06
11 19 0.53
ACGTcount: A:0.37, C:0.21, G:0.09, T:0.33
Consensus pattern (11 bp):
ATCATATGCAT
Found at i:47324798 original size:29 final size:28
Alignment explanation
Indices: 47324752--47324816 Score: 85
Period size: 29 Copynumber: 2.3 Consensus size: 28
47324742 CACATACCAT
**
47324752 ATTCATATGGCCCTTTAGGCCCAAATCAC
1 ATTCATATGGCCAGTTAGGCCC-AATCAC
* *
47324781 ATTTATATGGCCAGTTAGGCCCAGTCAC
1 ATTCATATGGCCAGTTAGGCCCAATCAC
47324809 ATTCATAT
1 ATTCATAT
47324817 TCATGCTTAC
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
28 12 0.39
29 19 0.61
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.31
Consensus pattern (28 bp):
ATTCATATGGCCAGTTAGGCCCAATCAC
Found at i:47330618 original size:48 final size:48
Alignment explanation
Indices: 47330534--47330796 Score: 332
Period size: 48 Copynumber: 5.5 Consensus size: 48
47330524 AAAGTACTAG
* ** * *
47330534 TGCCATGTCCCCA-ACATGGTCTTACATGAATC-CACATATCATCGTCGA
1 TGCCATGT-CCCAGACATGGTCTTACA-CAGGCACATATATCATCGCCGA
* * * * * *
47330582 TACCATATCCCAGACATGGTATTACACTGGCACACATATCATCACCGA
1 TGCCATGTCCCAGACATGGTCTTACACAGGCACATATATCATCGCCGA
*
47330630 TGCCATGTCCTAGACATGGTCTTACACAGGCACATATATCATCGCCGA
1 TGCCATGTCCCAGACATGGTCTTACACAGGCACATATATCATCGCCGA
* *
47330678 TGCCATGTCCCAGACATGGTCTTACACAGACACATATATCATCGTCGA
1 TGCCATGTCCCAGACATGGTCTTACACAGGCACATATATCATCGCCGA
* *
47330726 TGCCATGTCCCAGACATGGTCTTACACAGGCACATATATTATCGCTGA
1 TGCCATGTCCCAGACATGGTCTTACACAGGCACATATATCATCGCCGA
* *
47330774 TTCCATGTCCCAAACATGGTCTT
1 TGCCATGTCCCAGACATGGTCTT
47330797 TCATGGAATC
Statistics
Matches: 188, Mismatches: 25, Indels: 4
0.87 0.12 0.02
Matches are distributed among these distances:
47 5 0.03
48 183 0.97
ACGTcount: A:0.28, C:0.30, G:0.16, T:0.26
Consensus pattern (48 bp):
TGCCATGTCCCAGACATGGTCTTACACAGGCACATATATCATCGCCGA
Found at i:47331043 original size:14 final size:15
Alignment explanation
Indices: 47331016--47331044 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
47331006 TCATGTAATG
47331016 TCAAGTATTAACATT
1 TCAAGTATTAACATT
47331031 TCAAGTA-TAACATT
1 TCAAGTATTAACATT
47331045 GTGTTATTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.41, C:0.14, G:0.07, T:0.38
Consensus pattern (15 bp):
TCAAGTATTAACATT
Found at i:47334396 original size:10 final size:10
Alignment explanation
Indices: 47334381--47334411 Score: 62
Period size: 10 Copynumber: 3.1 Consensus size: 10
47334371 ATTAAATCAA
47334381 ATACTTTCAC
1 ATACTTTCAC
47334391 ATACTTTCAC
1 ATACTTTCAC
47334401 ATACTTTCAC
1 ATACTTTCAC
47334411 A
1 A
47334412 CCCTGACCCG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.32, C:0.29, G:0.00, T:0.39
Consensus pattern (10 bp):
ATACTTTCAC
Found at i:47335171 original size:38 final size:38
Alignment explanation
Indices: 47335128--47335360 Score: 322
Period size: 38 Copynumber: 6.1 Consensus size: 38
47335118 GAAGGCCTGA
** * *
47335128 ATATAATACCAGCATTAGGCCTGCGGGATTTATCCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
*
47335166 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCAG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
** * *
47335204 ATATTTTACCAGCACGAAGCTTGCGGGTCTTTAAGCCCGG
1 ATATAATACCAGCACGAAGCCTGCGGG-ATTTAA-CCCGG
*
47335244 ATATAGTACCAGCACGAAGCCTGCGGGATTTAACCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
*
47335282 ATATAATACCAGCACGAAGCTTGCGGGATTTAACCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
* * *
47335320 ATATAATACCGGCACGAAGCCTACGGGATTTAACCTGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
47335358 ATA
1 ATA
47335361 GACATCGAAT
Statistics
Matches: 173, Mismatches: 20, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
38 135 0.78
39 10 0.06
40 28 0.16
ACGTcount: A:0.30, C:0.24, G:0.24, T:0.22
Consensus pattern (38 bp):
ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
Found at i:47335254 original size:78 final size:76
Alignment explanation
Indices: 47335128--47335354 Score: 328
Period size: 78 Copynumber: 3.0 Consensus size: 76
47335118 GAAGGCCTGA
** * * *
47335128 ATATAATACCAGCATTAGGCCTGCGGGATTTATCCCGGATATAATACCAGCACGAAGCCTGCGGG
1 ATATAATACCAGCACGAAGCTTGCGGGATTTAACCCGGATATAATACCAGCACGAAGCCTGCGGG
47335193 ATTTAACCCAG
66 ATTTAACCCAG
** * *
47335204 ATATTTTACCAGCACGAAGCTTGCGGGTCTTTAAGCCCGGATATAGTACCAGCACGAAGCCTGCG
1 ATATAATACCAGCACGAAGCTTGCGGG-ATTTAA-CCCGGATATAATACCAGCACGAAGCCTGCG
*
47335269 GGATTTAACCCGG
64 GGATTTAACCCAG
* *
47335282 ATATAATACCAGCACGAAGCTTGCGGGATTTAACCCGGATATAATACCGGCACGAAGCCTACGGG
1 ATATAATACCAGCACGAAGCTTGCGGGATTTAACCCGGATATAATACCAGCACGAAGCCTGCGGG
47335347 ATTTAACC
66 ATTTAACC
47335355 TGGATAGACA
Statistics
Matches: 133, Mismatches: 16, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
76 58 0.44
77 9 0.07
78 66 0.50
ACGTcount: A:0.30, C:0.25, G:0.23, T:0.22
Consensus pattern (76 bp):
ATATAATACCAGCACGAAGCTTGCGGGATTTAACCCGGATATAATACCAGCACGAAGCCTGCGGG
ATTTAACCCAG
Found at i:47335335 original size:116 final size:116
Alignment explanation
Indices: 47335128--47335339 Score: 334
Period size: 116 Copynumber: 1.8 Consensus size: 116
47335118 GAAGGCCTGA
** * *
47335128 ATATAATACCAGCATTAGGCCTGCGGGATTTATCCCGGATATAATACCAGCACGAAGCCTGCGGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAATACCAGCACGAAGCCTGCGGG
**
47335193 ATTTAACCCAGATATTTTACCAGCACGAAGCTTGCGGGTCTTTAAGCCCGG
66 ATTTAACCCAGATATAATACCAGCACGAAGCTTGCGGGTCTTTAAGCCCGG
* *
47335244 ATATAGTACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAATACCAGCACGAAGCTTGCGGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAATACCAGCACGAAGCCTGCGGG
* *
47335309 ATTTAACCCGGATATAATACCGGCACGAAGC
66 ATTTAACCCAGATATAATACCAGCACGAAGC
47335340 CTACGGGATT
Statistics
Matches: 86, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
116 86 1.00
ACGTcount: A:0.30, C:0.25, G:0.24, T:0.22
Consensus pattern (116 bp):
ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAATACCAGCACGAAGCCTGCGGG
ATTTAACCCAGATATAATACCAGCACGAAGCTTGCGGGTCTTTAAGCCCGG
Found at i:47339929 original size:15 final size:15
Alignment explanation
Indices: 47339900--47339930 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
47339890 TCCATGAGAA
*
47339900 AGAAATCCAAGATAC
1 AGAAATCCAAAATAC
47339915 AGAAATCCAAAATAC
1 AGAAATCCAAAATAC
47339930 A
1 A
47339931 ATATCATAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.58, C:0.19, G:0.10, T:0.13
Consensus pattern (15 bp):
AGAAATCCAAAATAC
Found at i:47351669 original size:20 final size:20
Alignment explanation
Indices: 47351644--47351720 Score: 55
Period size: 20 Copynumber: 3.5 Consensus size: 20
47351634 TGGTTGAGCA
47351644 TCCGAGCTCGTTGAGTTGAG
1 TCCGAGCTCGTTGAGTTGAG
* * *
47351664 TCCGAGTTCACTTATGGAGTCGAATG
1 TCCGAG--CTCGT-T-GAGTTG-A-G
*
47351690 TCCGAACTCGTTGAGTTGAG
1 TCCGAGCTCGTTGAGTTGAG
*
47351710 TCCGAGTTCGT
1 TCCGAGCTCGT
47351721 GAAATGTAAC
Statistics
Matches: 42, Mismatches: 9, Indels: 12
0.67 0.14 0.19
Matches are distributed among these distances:
20 16 0.38
21 1 0.02
22 8 0.19
23 2 0.05
24 8 0.19
25 1 0.02
26 6 0.14
ACGTcount: A:0.18, C:0.21, G:0.30, T:0.31
Consensus pattern (20 bp):
TCCGAGCTCGTTGAGTTGAG
Found at i:47355028 original size:13 final size:14
Alignment explanation
Indices: 47355010--47355038 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
47355000 ACAACCAAAG
47355010 TATACC-AAATCAT
1 TATACCAAAATCAT
47355023 TATACCAAAATCAT
1 TATACCAAAATCAT
47355037 TA
1 TA
47355039 CAATTTATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.40
14 9 0.60
ACGTcount: A:0.48, C:0.21, G:0.00, T:0.31
Consensus pattern (14 bp):
TATACCAAAATCAT
Found at i:47362087 original size:86 final size:86
Alignment explanation
Indices: 47361942--47362112 Score: 342
Period size: 86 Copynumber: 2.0 Consensus size: 86
47361932 TATAATTCAA
47361942 ACGTACCTGAATCGGATACTCATTCACATAGTCATTTATTTTTCTCGGACTGCCTGTTGAACCGT
1 ACGTACCTGAATCGGATACTCATTCACATAGTCATTTATTTTTCTCGGACTGCCTGTTGAACCGT
47362007 TCGAAATCAATAAGGATACTG
66 TCGAAATCAATAAGGATACTG
47362028 ACGTACCTGAATCGGATACTCATTCACATAGTCATTTATTTTTCTCGGACTGCCTGTTGAACCGT
1 ACGTACCTGAATCGGATACTCATTCACATAGTCATTTATTTTTCTCGGACTGCCTGTTGAACCGT
47362093 TCGAAATCAATAAGGATACT
66 TCGAAATCAATAAGGATACT
47362113 CGGATAACCC
Statistics
Matches: 85, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
86 85 1.00
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.33
Consensus pattern (86 bp):
ACGTACCTGAATCGGATACTCATTCACATAGTCATTTATTTTTCTCGGACTGCCTGTTGAACCGT
TCGAAATCAATAAGGATACTG
Found at i:47362245 original size:42 final size:43
Alignment explanation
Indices: 47362155--47362250 Score: 115
Period size: 42 Copynumber: 2.3 Consensus size: 43
47362145 GTCCAAGATG
* * * * *
47362155 TGGTCTTACATGTAATCAAATATTGATGCCATTGTCCCAGACA
1 TGGTCTTACACGAAATAAAATATCGATGCCATTGTCCCAAACA
*
47362198 AGGTCTTACACGAAATAAAATA-CGATGCCGA-TGTCCCAAACA
1 TGGTCTTACACGAAATAAAATATCGATGCC-ATTGTCCCAAACA
47362240 TGGTCTTACAC
1 TGGTCTTACAC
47362251 TTAAATCATA
Statistics
Matches: 45, Mismatches: 7, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
42 26 0.58
43 19 0.42
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (43 bp):
TGGTCTTACACGAAATAAAATATCGATGCCATTGTCCCAAACA
Found at i:47370692 original size:25 final size:24
Alignment explanation
Indices: 47370664--47370769 Score: 83
Period size: 25 Copynumber: 4.3 Consensus size: 24
47370654 GTATGCTCAT
*
47370664 ACGAGCTATGAATCAGTATGCTCTC
1 ACGAGCT-TGAATCAGTAAGCTCTC
* **
47370689 ACGAGC-TGCAAATCGGTAAGCTCAA
1 ACGAGCTTG--AATCAGTAAGCTCTC
47370714 ACGAGCTTAGAATCAGTAAGCTCTC
1 ACGAGCTT-GAATCAGTAAGCTCTC
* *
47370739 ACAAGC-TGCAATCGGTAAGCTCAT-
1 ACGAGCTTG-AATCAGTAAGCTC-TC
47370763 ACGAGCT
1 ACGAGCT
47370770 GAGAATCTAT
Statistics
Matches: 64, Mismatches: 10, Indels: 14
0.73 0.11 0.16
Matches are distributed among these distances:
23 3 0.05
24 18 0.28
25 41 0.64
26 1 0.02
27 1 0.02
ACGTcount: A:0.32, C:0.25, G:0.22, T:0.22
Consensus pattern (24 bp):
ACGAGCTTGAATCAGTAAGCTCTC
Found at i:47370775 original size:49 final size:49
Alignment explanation
Indices: 47370653--47370776 Score: 178
Period size: 50 Copynumber: 2.5 Consensus size: 49
47370643 TTCTTGTACA
* * *
47370653 GGTATGCTCATACGAGCTATGAATCAGTATGCTCTCACGAGCTGCAAATC
1 GGTAAGCTCATACGAGCTA-GAATCAGTAAGCTCTCACAAGCTGCAAATC
*
47370703 GGTAAGCTCAAACGAGCTTAGAATCAGTAAGCTCTCACAAGCTGC-AATC
1 GGTAAGCTCATACGAGC-TAGAATCAGTAAGCTCTCACAAGCTGCAAATC
47370752 GGTAAGCTCATACGAGCTGAGAATC
1 GGTAAGCTCATACGAGCT-AGAATC
47370777 TATAATCCCT
Statistics
Matches: 67, Mismatches: 5, Indels: 5
0.87 0.06 0.06
Matches are distributed among these distances:
48 1 0.01
49 26 0.39
50 38 0.57
51 2 0.03
ACGTcount: A:0.31, C:0.23, G:0.23, T:0.23
Consensus pattern (49 bp):
GGTAAGCTCATACGAGCTAGAATCAGTAAGCTCTCACAAGCTGCAAATC
Found at i:47385052 original size:31 final size:32
Alignment explanation
Indices: 47385011--47385076 Score: 125
Period size: 31 Copynumber: 2.1 Consensus size: 32
47385001 CTTCACGTGC
47385011 CTTTATGGCATAAGTTCTAGATGGAGCCCTTG
1 CTTTATGGCATAAGTTCTAGATGGAGCCCTTG
47385043 CTTTA-GGCATAAGTTCTAGATGGAGCCCTTG
1 CTTTATGGCATAAGTTCTAGATGGAGCCCTTG
47385074 CTT
1 CTT
47385077 CAGGTTTAGC
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 29 0.85
32 5 0.15
ACGTcount: A:0.21, C:0.20, G:0.24, T:0.35
Consensus pattern (32 bp):
CTTTATGGCATAAGTTCTAGATGGAGCCCTTG
Found at i:47395074 original size:49 final size:49
Alignment explanation
Indices: 47394969--47395142 Score: 146
Period size: 49 Copynumber: 3.7 Consensus size: 49
47394959 GCATATCAAA
*
47394969 GTCGATGCCATGTCCCAGATAGGTCTTACACTGACTTTCATATATAGAG
1 GTCGATGCCATGTCCCAGATAGGTCTTACACTGACTCTCATATATAGAG
** * * *
47395018 G-CTGATGCTGTGTCCCAGATAGGTCTTACACTGGCTCTCATCTATCG-G
1 GTC-GATGCCATGTCCCAGATAGGTCTTACACTGACTCTCATATATAGAG
* * * * * *
47395066 TGTCGATGCCATGCCCCAGACATGTCTTAGACTGA--CACACA-ATA-A-
1 -GTCGATGCCATGTCCCAGATAGGTCTTACACTGACTCTCATATATAGAG
* * *
47395111 GTTGACGCCATGTCCCAGACAGGTCTTACACT
1 GTCGATGCCATGTCCCAGATAGGTCTTACACT
47395143 AGCTTGTATA
Statistics
Matches: 99, Mismatches: 22, Indels: 13
0.74 0.16 0.10
Matches are distributed among these distances:
44 27 0.27
46 2 0.02
47 3 0.03
48 2 0.02
49 64 0.65
50 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.21, T:0.28
Consensus pattern (49 bp):
GTCGATGCCATGTCCCAGATAGGTCTTACACTGACTCTCATATATAGAG
Found at i:47406845 original size:20 final size:19
Alignment explanation
Indices: 47406813--47406853 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
47406803 AATTAGTGTT
*
47406813 TTTTTAATAATTTTTAAAA
1 TTTTAAATAATTTTTAAAA
*
47406832 TTTTAAATATATTTTTAGAA
1 TTTTAAATA-ATTTTTAAAA
47406852 TT
1 TT
47406854 ATCTAAAAGT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 8 0.42
20 11 0.58
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (19 bp):
TTTTAAATAATTTTTAAAA
Found at i:47414045 original size:27 final size:27
Alignment explanation
Indices: 47414015--47414192 Score: 180
Period size: 27 Copynumber: 6.6 Consensus size: 27
47414005 ATATTGAGCC
* * *
47414015 CGCACACTCAGTGCTATATATTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
* * * *
47414042 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAACT
47414069 CGCACACTTAGTGCTACATAGTCAGACT
1 CGCACACTTAGTGCTACATAGTCA-ACT
** * *
47414097 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
* **
47414124 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAACT
*
47414151 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAGTC-AACT
47414178 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
47414193 GTACAATTTT
Statistics
Matches: 126, Mismatches: 21, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
27 101 0.80
28 25 0.20
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:47414154 original size:82 final size:81
Alignment explanation
Indices: 47414036--47414191 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
47414026 TGCTATATAT
* * *
47414036 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTCAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTC-GAATCGCA
47414101 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
47414118 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTCGAATCGCA
47414182 CACTTAGTGC
65 CACTTAGTGC
47414192 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 19 0.29
82 47 0.71
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTCGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:47432918 original size:48 final size:48
Alignment explanation
Indices: 47432855--47432991 Score: 238
Period size: 48 Copynumber: 2.9 Consensus size: 48
47432845 TTATCATATT
*
47432855 GATGCCAATGCCATGTCCCATACATGGTCTTACATGGGATCACATAAC
1 GATGCCAATGCCATGTCCCATACATGGTCTTACATGGGATCACATAAA
*
47432903 GATGACAATGCCATGTCCCATACATGGTCTTACATGGGATCACATAAA
1 GATGCCAATGCCATGTCCCATACATGGTCTTACATGGGATCACATAAA
* *
47432951 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGAGATC
1 GATGCCAATGCCATGTCCCATACATGGTCTTACATGGGATC
47432992 TTATCAACCT
Statistics
Matches: 84, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 84 1.00
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.25
Consensus pattern (48 bp):
GATGCCAATGCCATGTCCCATACATGGTCTTACATGGGATCACATAAA
Found at i:47436272 original size:42 final size:42
Alignment explanation
Indices: 47436225--47436309 Score: 152
Period size: 42 Copynumber: 2.0 Consensus size: 42
47436215 TAATGATTGT
47436225 TTTAGAACTCCACTGGTTCTTTTCGGATCATGGGTTAAATAC
1 TTTAGAACTCCACTGGTTCTTTTCGGATCATGGGTTAAATAC
* *
47436267 TTTAGAACTCCATTGGTTCTTTTTGGATCATGGGTTAAATAC
1 TTTAGAACTCCACTGGTTCTTTTCGGATCATGGGTTAAATAC
47436309 T
1 T
47436310 AATCTATCGA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.24, C:0.16, G:0.19, T:0.41
Consensus pattern (42 bp):
TTTAGAACTCCACTGGTTCTTTTCGGATCATGGGTTAAATAC
Found at i:47436895 original size:26 final size:27
Alignment explanation
Indices: 47436855--47436912 Score: 66
Period size: 27 Copynumber: 2.1 Consensus size: 27
47436845 GTCGTTAAGA
* *
47436855 CCCTGATTT-GTAAAATGACCGTAATAC
1 CCCTGATTTGGAAAAAT-ACCATAATAC
47436882 CCCTGA-TTGGAAAAAATACCATAATAC
1 CCCTGATTTGG-AAAAATACCATAATAC
47436909 CCCT
1 CCCT
47436913 ATATGGTAGA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
26 2 0.07
27 20 0.74
28 5 0.19
ACGTcount: A:0.36, C:0.26, G:0.12, T:0.26
Consensus pattern (27 bp):
CCCTGATTTGGAAAAATACCATAATAC
Found at i:47437104 original size:22 final size:22
Alignment explanation
Indices: 47437074--47437128 Score: 101
Period size: 22 Copynumber: 2.5 Consensus size: 22
47437064 TGTGGCCTGT
*
47437074 AGCCGTTCTGTACAAGGCTTTC
1 AGCCTTTCTGTACAAGGCTTTC
47437096 AGCCTTTCTGTACAAGGCTTTC
1 AGCCTTTCTGTACAAGGCTTTC
47437118 AGCCTTTCTGT
1 AGCCTTTCTGT
47437129 GATACTTATG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.16, C:0.27, G:0.20, T:0.36
Consensus pattern (22 bp):
AGCCTTTCTGTACAAGGCTTTC
Found at i:47440603 original size:20 final size:20
Alignment explanation
Indices: 47440573--47440617 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
47440563 CTGTTTTGTT
47440573 ATGGG-CCAACTGTATTGAA
1 ATGGGCCCAACTGTATTGAA
* *
47440592 ATGGGCCCAACTGTGTTGAT
1 ATGGGCCCAACTGTATTGAA
47440612 ATGGGC
1 ATGGGC
47440618 AAGGCCCAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 5 0.22
20 18 0.78
ACGTcount: A:0.24, C:0.18, G:0.31, T:0.27
Consensus pattern (20 bp):
ATGGGCCCAACTGTATTGAA
Found at i:47440711 original size:60 final size:60
Alignment explanation
Indices: 47440608--47440746 Score: 160
Period size: 60 Copynumber: 2.3 Consensus size: 60
47440598 CCAACTGTGT
*
47440608 TGATATGGGCAAGGCCCAATATATCTTGACTCGTAATAAGGCTACGA-CCCAGATTAATAC
1 TGATATGGGCTAGGCCCAATATATCTTGACTCGTAATAAGGCTA-GAGCCCAGATTAATAC
** * *
47440668 TGATATGGGCTAGGCCCAATATCATC-TGA-TACTGTAA-GGGGCTATAGCCCAGATTAATAT
1 TGATATGGGCTAGGCCCAATAT-ATCTTGACT-C-GTAATAAGGCTAGAGCCCAGATTAATAC
47440728 TGATATGGGCTGAGGCCCA
1 TGATATGGGCT-AGGCCCA
47440747 GTTAACATTG
Statistics
Matches: 69, Mismatches: 5, Indels: 9
0.83 0.06 0.11
Matches are distributed among these distances:
59 2 0.03
60 53 0.77
61 14 0.20
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (60 bp):
TGATATGGGCTAGGCCCAATATATCTTGACTCGTAATAAGGCTAGAGCCCAGATTAATAC
Found at i:47441638 original size:16 final size:17
Alignment explanation
Indices: 47441606--47441638 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
47441596 CATCAAGAAG
47441606 GGTTTTCAATGAAAACAT
1 GGTTTTCAA-GAAAACAT
47441624 GGTTTTCAA-AAAACA
1 GGTTTTCAAGAAAACA
47441639 CTTCAATGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.42, C:0.12, G:0.15, T:0.30
Consensus pattern (17 bp):
GGTTTTCAAGAAAACAT
Found at i:47454758 original size:20 final size:20
Alignment explanation
Indices: 47454730--47454768 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
47454720 GACCACACGG
47454730 CCAACCCACACGGGCGTGTC
1 CCAACCCACACGGGCGTGTC
* *
47454750 CCAAGCCACACGTGCGTGT
1 CCAACCCACACGGGCGTGT
47454769 GACCCCTATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.21, C:0.41, G:0.26, T:0.13
Consensus pattern (20 bp):
CCAACCCACACGGGCGTGTC
Found at i:47456387 original size:28 final size:29
Alignment explanation
Indices: 47456355--47456415 Score: 97
Period size: 28 Copynumber: 2.1 Consensus size: 29
47456345 CAAAAAGATA
47456355 TTGAGTTTTAGATCAAAGATAAAGTGTT-
1 TTGAGTTTTAGATCAAAGATAAAGTGTTC
* *
47456383 TTGAGTTTTAGATTAGAGATAAAGTGTTC
1 TTGAGTTTTAGATCAAAGATAAAGTGTTC
47456412 TTGA
1 TTGA
47456416 AAGTATTGCC
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
28 26 0.87
29 4 0.13
ACGTcount: A:0.33, C:0.03, G:0.23, T:0.41
Consensus pattern (29 bp):
TTGAGTTTTAGATCAAAGATAAAGTGTTC
Found at i:47457268 original size:37 final size:37
Alignment explanation
Indices: 47457222--47457303 Score: 139
Period size: 37 Copynumber: 2.2 Consensus size: 37
47457212 ATAAATAAAA
*
47457222 CAAAGTTAAAATAAGCTTTAATCTCATCATCTTCAAT
1 CAAAATTAAAATAAGCTTTAATCTCATCATCTTCAAT
47457259 CAAAATTAAAATAAGCTTTAATCTCATCATCTTCAAT
1 CAAAATTAAAATAAGCTTTAATCTCATCATCTTCAAT
47457296 -AGAAATTA
1 CA-AAATTA
47457304 GAAGACAAAG
Statistics
Matches: 43, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
36 1 0.02
37 42 0.98
ACGTcount: A:0.44, C:0.17, G:0.05, T:0.34
Consensus pattern (37 bp):
CAAAATTAAAATAAGCTTTAATCTCATCATCTTCAAT
Found at i:47461099 original size:43 final size:43
Alignment explanation
Indices: 47461051--47461132 Score: 119
Period size: 43 Copynumber: 1.9 Consensus size: 43
47461041 ATCTAGAATA
** *
47461051 TGGCATCGATATGAGATTTCGTGTAAGACCATAGCTAGGCTAT
1 TGGCATCGATATGAGATCCCATGTAAGACCATAGCTAGGCTAT
* *
47461094 TGGCATCGATTTGAGATCCCATGTAAGACCATATCTAGG
1 TGGCATCGATATGAGATCCCATGTAAGACCATAGCTAGG
47461133 ATAAGGCATT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 34 1.00
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.29
Consensus pattern (43 bp):
TGGCATCGATATGAGATCCCATGTAAGACCATAGCTAGGCTAT
Found at i:47465027 original size:101 final size:101
Alignment explanation
Indices: 47464852--47465038 Score: 286
Period size: 101 Copynumber: 1.9 Consensus size: 101
47464842 ATTGTGAATA
* * *
47464852 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACTATTAAGTCGCATGTGTAGTACT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTATGAAGTCACATGTGTAGTACT
47464917 AAGTGCAGGCTACTATGCGTACTCAATGACTTTGAT
66 AAGTGCAGGCTACTATGCGTACTCAATGACTTTGAT
* * * **
47464953 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGA-TGGTGAGGTCATGTGTGTAGTAC
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACT-ATGAAGTCACATGTGTAGTAC
47465017 TAAGTGCAGGCTACTATGCGTA
65 TAAGTGCAGGCTACTATGCGTA
47465039 TCAGATAGCT
Statistics
Matches: 77, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
100 1 0.01
101 76 0.99
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (101 bp):
CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTATGAAGTCACATGTGTAGTACT
AAGTGCAGGCTACTATGCGTACTCAATGACTTTGAT
Found at i:47465040 original size:50 final size:51
Alignment explanation
Indices: 47464852--47465044 Score: 205
Period size: 50 Copynumber: 3.8 Consensus size: 51
47464842 ATTGTGAATA
* * * * * *
47464852 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACT-ATTAAG-T
1 CACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTATCAGA-TGACTGAGAT
* * **
47464902 CGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCA-ATGACTTTGAT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTA-TCAGATGACTGAGAT
* * * *
47464953 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATG-GTGAGGT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTATCAGATGACTGAGAT
*
47465003 CATGTGTGTAGTACTAAGTGCAGGCTACTATGCGTATCAGAT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTATCAGAT
47465045 AGCTTCGGTT
Statistics
Matches: 120, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
49 1 0.01
50 81 0.68
51 38 0.32
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (51 bp):
CACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTATCAGATGACTGAGAT
Found at i:47472418 original size:51 final size:50
Alignment explanation
Indices: 47472299--47472490 Score: 176
Period size: 50 Copynumber: 3.8 Consensus size: 50
47472289 ATTGTGAATA
* * * * * *
47472299 CACGTGTGTAGTACTAAGTGCAGGCTAGTACGTGT-TCCATACTGTTAAG-T
1 CACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTAT-CAGA-TGCTGAGAT
* * * **
47472349 CGCATGTGTAGTACTAAGTGTAGGCTACTATGCGTACTCA-ATGACTTTGAT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTA-TCAGATG-CTGAGAT
* * * *
47472400 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTGAGGT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTATCAGATGCTGAGAT
*
47472450 CATGTGTGTAGTAC-AAGTGCAGGCTACTATGCGTATCAGAT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTATCAGAT
47472491 AGCTTCGGCT
Statistics
Matches: 116, Mismatches: 21, Indels: 11
0.78 0.14 0.07
Matches are distributed among these distances:
49 27 0.23
50 51 0.44
51 37 0.32
52 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (50 bp):
CACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTATCAGATGCTGAGAT
Found at i:47474357 original size:22 final size:22
Alignment explanation
Indices: 47474331--47474374 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
47474321 GAAAATGATC
*
47474331 AAAATTAATCAAAATTTATTAT
1 AAAATTAATCAAAATTCATTAT
* *
47474353 AAAATTATTTAAAATTCATTAT
1 AAAATTAATCAAAATTCATTAT
47474375 GTTAATAATT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.52, C:0.05, G:0.00, T:0.43
Consensus pattern (22 bp):
AAAATTAATCAAAATTCATTAT
Found at i:47474654 original size:29 final size:29
Alignment explanation
Indices: 47474612--47474670 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 29
47474602 ATGTAATAAA
* * *
47474612 TCAATAACGTTAGTGAATATATTGTAATT
1 TCAAAAACATTAGTGAATACATTGTAATT
*
47474641 TCAAAAACATTAGTGATTACATTGTAATT
1 TCAAAAACATTAGTGAATACATTGTAATT
47474670 T
1 T
47474671 GTTAAAGTTC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.39, C:0.08, G:0.12, T:0.41
Consensus pattern (29 bp):
TCAAAAACATTAGTGAATACATTGTAATT
Found at i:47488764 original size:20 final size:20
Alignment explanation
Indices: 47488735--47488790 Score: 78
Period size: 20 Copynumber: 2.9 Consensus size: 20
47488725 AGCCAAAAAC
47488735 CATATATATATAATCATTGA
1 CATATATATATAATCATTGA
*
47488755 CATATTTATATAATCATTGA
1 CATATATATATAATCATTGA
* *
47488775 CAT-TCTATTTAATCAT
1 CATATATATATAATCAT
47488791 AGTTCTCATA
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
19 11 0.33
20 22 0.67
ACGTcount: A:0.39, C:0.12, G:0.04, T:0.45
Consensus pattern (20 bp):
CATATATATATAATCATTGA
Found at i:47489852 original size:18 final size:18
Alignment explanation
Indices: 47489829--47489892 Score: 58
Period size: 18 Copynumber: 3.4 Consensus size: 18
47489819 AGCAACGATC
47489829 TCAAAAACGTAGAAATTA
1 TCAAAAACGTAGAAATTA
* *
47489847 TCAAAAATCG-AGTCAACAATC
1 TCAAAAA-CGTAG--AA-ATTA
*
47489868 TCAAAAACATAGAAATTA
1 TCAAAAACGTAGAAATTA
47489886 TCAAAAA
1 TCAAAAA
47489893 TCGAGTTAAA
Statistics
Matches: 36, Mismatches: 5, Indels: 10
0.71 0.10 0.20
Matches are distributed among these distances:
18 18 0.50
19 4 0.11
20 3 0.08
21 11 0.31
ACGTcount: A:0.56, C:0.16, G:0.08, T:0.20
Consensus pattern (18 bp):
TCAAAAACGTAGAAATTA
Found at i:47489881 original size:39 final size:39
Alignment explanation
Indices: 47489821--47489898 Score: 138
Period size: 39 Copynumber: 2.0 Consensus size: 39
47489811 GTACTCGAAG
* *
47489821 CAACGATCTCAAAAACGTAGAAATTATCAAAAATCGAGT
1 CAACAATCTCAAAAACATAGAAATTATCAAAAATCGAGT
47489860 CAACAATCTCAAAAACATAGAAATTATCAAAAATCGAGT
1 CAACAATCTCAAAAACATAGAAATTATCAAAAATCGAGT
47489899 TAAACTCATA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.51, C:0.18, G:0.10, T:0.21
Consensus pattern (39 bp):
CAACAATCTCAAAAACATAGAAATTATCAAAAATCGAGT
Found at i:47499759 original size:19 final size:18
Alignment explanation
Indices: 47499735--47499774 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
47499725 AGGGAATTTG
*
47499735 AAATGGAAAAGAAGAGATA
1 AAATGG-AAAGAAGAGAGA
*
47499754 AAATGGAGAGAAGAGAGA
1 AAATGGAAAGAAGAGAGA
47499772 AAA
1 AAA
47499775 GATGTGAATG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 13 0.68
19 6 0.32
ACGTcount: A:0.62, C:0.00, G:0.30, T:0.07
Consensus pattern (18 bp):
AAATGGAAAGAAGAGAGA
Found at i:47505320 original size:43 final size:43
Alignment explanation
Indices: 47505153--47505322 Score: 152
Period size: 43 Copynumber: 4.0 Consensus size: 43
47505143 ATATCGTACA
* * *
47505153 ATGCCAACGTCCCAGACATGGTCTTACATGTA-ATCACATGTCG
1 ATGCCAACGTCCCAGACATGGTCTTACACG-AGAACACATATCG
* * *
47505196 ATGCC-ACTGTCCCAGACAGGGTCTTATACG-GATCACA-ATTACG
1 ATGCCAAC-GTCCCAGACATGGTCTTACACGAGAACACATA-T-CG
* * * *
47505239 ATACCAATGTCCCAGACATGGTCTTACTC-AAAATCACATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGAGAA-CACATATCG
* *
47505282 ATGCCAACGTCCTAGACGTGGTCTTACACGAGAACACATAT
1 ATGCCAACGTCCCAGACATGGTCTTACACGAGAACACATAT
47505323 AAAAAATCCT
Statistics
Matches: 101, Mismatches: 17, Indels: 18
0.74 0.12 0.13
Matches are distributed among these distances:
42 9 0.09
43 82 0.81
44 9 0.09
45 1 0.01
ACGTcount: A:0.31, C:0.28, G:0.18, T:0.24
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGAGAACACATATCG
Found at i:47513633 original size:43 final size:43
Alignment explanation
Indices: 47513572--47513719 Score: 197
Period size: 43 Copynumber: 3.4 Consensus size: 43
47513562 CACATATCAG
* * *
47513572 AATCACATATTGATGCCAATGTATTAAACGTGGTCTTACTCGT
1 AATCACATATCGATGCCAACGTACTAAACGTGGTCTTACTCGT
* * *
47513615 AATCACATATCAATGCCAACGTACTAAACGTAGTCTTACTCAT
1 AATCACATATCGATGCCAACGTACTAAACGTGGTCTTACTCGT
* * * * *
47513658 AATCACATATCGATGCCGACGTCCCAGACGTGGTCTTACACGT
1 AATCACATATCGATGCCAACGTACTAAACGTGGTCTTACTCGT
47513701 AATCACATATCGATGCCAA
1 AATCACATATCGATGCCAA
47513720 TTTCCCAGAC
Statistics
Matches: 90, Mismatches: 15, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 90 1.00
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (43 bp):
AATCACATATCGATGCCAACGTACTAAACGTGGTCTTACTCGT
Found at i:47513726 original size:43 final size:43
Alignment explanation
Indices: 47513572--47513753 Score: 193
Period size: 43 Copynumber: 4.2 Consensus size: 43
47513562 CACATATCAG
* * ** *
47513572 AATCACATATTGATGCCAATGTATTAAACGTGGTCTTACTCGT
1 AATCACATATCGATGCCAACGTACCAAACGTGGTCTTACACGT
* * * * *
47513615 AATCACATATCAATGCCAACGTACTAAACGTAGTCTTACTCAT
1 AATCACATATCGATGCCAACGTACCAAACGTGGTCTTACACGT
* * *
47513658 AATCACATATCGATGCCGACGTCCCAGACGTGGTCTTACACGT
1 AATCACATATCGATGCCAACGTACCAAACGTGGTCTTACACGT
** * * *
47513701 AATCACATATCGATGCCAATTTCCCAGACGTGGTCTTACATGT
1 AATCACATATCGATGCCAACGTACCAAACGTGGTCTTACACGT
*
47513744 AATCATATAT
1 AATCACATAT
47513754 TGAAAATCCT
Statistics
Matches: 120, Mismatches: 19, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 120 1.00
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.30
Consensus pattern (43 bp):
AATCACATATCGATGCCAACGTACCAAACGTGGTCTTACACGT
Found at i:47524049 original size:93 final size:93
Alignment explanation
Indices: 47523937--47524108 Score: 301
Period size: 93 Copynumber: 1.8 Consensus size: 93
47523927 CACCCATAAG
*
47523937 CGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGAACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGAACTCAACTC
47524001 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
* *
47524030 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCA
47524095 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
47524109 TCAATCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 2 0.03
93 73 0.97
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:47524103 original size:46 final size:46
Alignment explanation
Indices: 47523930--47524105 Score: 200
Period size: 46 Copynumber: 3.8 Consensus size: 46
47523920 TGTAACCCAC
* *
47523930 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
* * *
47523976 CCATAAGTGAACTCGAACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
47524026 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
47524069 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
47524106 TGCTCAATCA
Statistics
Matches: 109, Mismatches: 11, Indels: 20
0.78 0.08 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 60 0.55
47 28 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:47531675 original size:39 final size:39
Alignment explanation
Indices: 47531621--47531890 Score: 407
Period size: 39 Copynumber: 6.9 Consensus size: 39
47531611 TTATATTATT
47531621 AGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTTCC
1 AGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTTCC
47531660 AGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTTCC
1 AGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTTCC
47531699 AGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTTCC
1 AGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTTCC
* * * *
47531738 AGCACGAAGCCTACGGGACTTTAGTCCGAATACATTTCC
1 AGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTTCC
* ** * *
47531777 AGCACGAAGCCTGC-AGACTTTGGCCTAGATATATTTCT
1 AGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTTCC
* * *
47531815 AACACGAAGCCTGCGGGACTTTAGCCCGGATATATTTCC
1 AGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTTCC
* *
47531854 AGCACGAAGCCTGCGGGACTTTAGCCCGAATACATTT
1 AGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTT
47531891 TCAGTGTCTT
Statistics
Matches: 208, Mismatches: 22, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
38 29 0.14
39 179 0.86
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.23
Consensus pattern (39 bp):
AGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTTCC
Found at i:47531852 original size:116 final size:117
Alignment explanation
Indices: 47531621--47531890 Score: 425
Period size: 116 Copynumber: 2.3 Consensus size: 117
47531611 TTATATTATT
* * *
47531621 AGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTGGCC
1 AGCACGAAGCCTGCGGGACTTTAGCCCGAATACATTTCCAGCACGAAGCCTGCGAGACTTTGGCC
* * *
47531686 CGGATACATTTCCAGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTTCC
66 CAGATACATTTCCAACACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCC
* *
47531738 AGCACGAAGCCTACGGGACTTTAGTCCGAATACATTTCCAGCACGAAGCCTGC-AGACTTTGGCC
1 AGCACGAAGCCTGCGGGACTTTAGCCCGAATACATTTCCAGCACGAAGCCTGCGAGACTTTGGCC
* * * *
47531802 TAGATATATTTCTAACACGAAGCCTGCGGGACTTTAGCCCGGATATATTTCC
66 CAGATACATTTCCAACACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCC
47531854 AGCACGAAGCCTGCGGGACTTTAGCCCGAATACATTT
1 AGCACGAAGCCTGCGGGACTTTAGCCCGAATACATTT
47531891 TCAGTGTCTT
Statistics
Matches: 139, Mismatches: 14, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
116 90 0.65
117 49 0.35
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.23
Consensus pattern (117 bp):
AGCACGAAGCCTGCGGGACTTTAGCCCGAATACATTTCCAGCACGAAGCCTGCGAGACTTTGGCC
CAGATACATTTCCAACACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCC
Found at i:47535036 original size:17 final size:20
Alignment explanation
Indices: 47535001--47535036 Score: 51
Period size: 17 Copynumber: 1.9 Consensus size: 20
47534991 GGAAAGTGAA
47535001 ATAATAAAAGATGATAAATG
1 ATAATAAAAGATGATAAATG
47535021 ATAA-AAAA-ATGA-AAAT
1 ATAATAAAAGATGATAAAT
47535037 ATCATCAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 3
0.84 0.00 0.16
Matches are distributed among these distances:
17 4 0.25
18 4 0.25
19 4 0.25
20 4 0.25
ACGTcount: A:0.67, C:0.00, G:0.11, T:0.22
Consensus pattern (20 bp):
ATAATAAAAGATGATAAATG
Found at i:47536686 original size:21 final size:22
Alignment explanation
Indices: 47536642--47536688 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 22
47536632 TAATTGATTT
*
47536642 AATAAGCAAAATCTTGACATAA
1 AATAAGCAAAATCTTGACACAA
* *
47536664 AATAATCAAAA-CTTGAGACAA
1 AATAAGCAAAATCTTGACACAA
47536685 AATA
1 AATA
47536689 TTATGAAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 12 0.55
22 10 0.45
ACGTcount: A:0.57, C:0.13, G:0.09, T:0.21
Consensus pattern (22 bp):
AATAAGCAAAATCTTGACACAA
Found at i:47542795 original size:17 final size:16
Alignment explanation
Indices: 47542761--47542818 Score: 50
Period size: 17 Copynumber: 3.6 Consensus size: 16
47542751 GTTTCAATAG
*
47542761 ATTTAATATTAGATTTA
1 ATTTAATATT-TATTTA
47542778 ATTTAATATTTATCTTA
1 ATTTAATATTTAT-TTA
*
47542795 A--TAGTATTT-TATTA
1 ATTTAATATTTAT-TTA
47542809 ATTTAATATT
1 ATTTAATATT
47542819 AAAGTAATTA
Statistics
Matches: 34, Mismatches: 4, Indels: 7
0.76 0.09 0.16
Matches are distributed among these distances:
14 5 0.15
15 7 0.21
16 8 0.24
17 14 0.41
ACGTcount: A:0.38, C:0.02, G:0.03, T:0.57
Consensus pattern (16 bp):
ATTTAATATTTATTTA
Found at i:47545712 original size:17 final size:17
Alignment explanation
Indices: 47545692--47545730 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
47545682 TCATCCCTTT
*
47545692 TCATAAATCATATGAAA
1 TCATAAATCATATAAAA
47545709 TCATAAATCATATAAAA
1 TCATAAATCATATAAAA
47545726 TCATA
1 TCATA
47545731 CTTTTCATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.54, C:0.13, G:0.03, T:0.31
Consensus pattern (17 bp):
TCATAAATCATATAAAA
Found at i:47545819 original size:140 final size:140
Alignment explanation
Indices: 47545567--47545832 Score: 514
Period size: 140 Copynumber: 1.9 Consensus size: 140
47545557 TAAATCTTAT
*
47545567 AATCATAAATCATATGAAATCATACTTTTCATAACATGGATATACATACTTTATTTATCAATACT
1 AATCATAAATCATATAAAATCATACTTTTCATAACATGGATATACATACTTTATTTATCAATACT
*
47545632 TCATACCTTTCCACAGTTTCATAGTGAAATCCATCAGAACCCTTACCGGTTCATCCCTTTTCATA
66 TCATACCTTTCCACAATTTCATAGTGAAATCCATCAGAACCCTTACCGGTTCATCCCTTTTCATA
47545697 AATCATATGA
131 AATCATATGA
47545707 AATCATAAATCATATAAAATCATACTTTTCATAACATGGATATACATACTTTATTTATCAATACT
1 AATCATAAATCATATAAAATCATACTTTTCATAACATGGATATACATACTTTATTTATCAATACT
47545772 TCATACCTTTCCACAATTTCATAGTGAAATCCATCAGAACCCTTACCGGTTCATCCCTTTT
66 TCATACCTTTCCACAATTTCATAGTGAAATCCATCAGAACCCTTACCGGTTCATCCCTTTT
47545833 TATACCCATT
Statistics
Matches: 124, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
140 124 1.00
ACGTcount: A:0.35, C:0.23, G:0.06, T:0.36
Consensus pattern (140 bp):
AATCATAAATCATATAAAATCATACTTTTCATAACATGGATATACATACTTTATTTATCAATACT
TCATACCTTTCCACAATTTCATAGTGAAATCCATCAGAACCCTTACCGGTTCATCCCTTTTCATA
AATCATATGA
Found at i:47545925 original size:6 final size:6
Alignment explanation
Indices: 47545914--47545940 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
47545904 GTCAAAATCA
47545914 TTCCTT TTCCTT TTCCTT TTCCTT TTC
1 TTCCTT TTCCTT TTCCTT TTCCTT TTC
47545941 ATAGATGCTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (6 bp):
TTCCTT
Found at i:47548132 original size:17 final size:17
Alignment explanation
Indices: 47548110--47548145 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
47548100 AAGACATATC
*
47548110 TGATAAAGCCCGATAAA
1 TGATAAAGCCCGAAAAA
47548127 TGATAAAGCCCGAAAAA
1 TGATAAAGCCCGAAAAA
47548144 TG
1 TG
47548146 TTAAGTCTCG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.47, C:0.17, G:0.19, T:0.17
Consensus pattern (17 bp):
TGATAAAGCCCGAAAAA
Found at i:47548410 original size:65 final size:65
Alignment explanation
Indices: 47548334--47548481 Score: 208
Period size: 65 Copynumber: 2.3 Consensus size: 65
47548324 GCGACTTCTG
*
47548334 CAGCTCTTTGTGAGCATCATGTTTAT-TGATCTGTTGTGATCCTGCATATGTTGCGGACACAAAC
1 CAGCTCTTTGTGAGCATCATG-TTATGTGATCGGTTGTGATCCTGCATATGTTGCGGACACAAAC
47548398 A
65 A
* * * * *
47548399 CAGCTCTTTGTGAGCGTCTTGTTATGTGATCGGTTGTGATCCTGCATATGTTGTGGACATAAACG
1 CAGCTCTTTGTGAGCATCATGTTATGTGATCGGTTGTGATCCTGCATATGTTGCGGACACAAACA
* *
47548464 CAGCTCCTTATGAGCATC
1 CAGCTCTTTGTGAGCATC
47548482 CTGATACGGC
Statistics
Matches: 73, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
64 4 0.05
65 69 0.95
ACGTcount: A:0.21, C:0.20, G:0.24, T:0.35
Consensus pattern (65 bp):
CAGCTCTTTGTGAGCATCATGTTATGTGATCGGTTGTGATCCTGCATATGTTGCGGACACAAACA
Found at i:47548583 original size:23 final size:24
Alignment explanation
Indices: 47548538--47548583 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
47548528 CCTGTTACAT
*
47548538 GGCTCTTTGTGAGTATTCCTAATA
1 GGCTCTTCGTGAGTATTCCTAATA
*
47548562 GGCTCTTCGTGAG-CTTCCTAAT
1 GGCTCTTCGTGAGTATTCCTAAT
47548584 TAAAAGTTCT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 8 0.40
24 12 0.60
ACGTcount: A:0.17, C:0.22, G:0.22, T:0.39
Consensus pattern (24 bp):
GGCTCTTCGTGAGTATTCCTAATA
Found at i:47548850 original size:40 final size:40
Alignment explanation
Indices: 47548806--47548884 Score: 140
Period size: 40 Copynumber: 2.0 Consensus size: 40
47548796 TTCAAATAAG
*
47548806 TTCAATAGGCAAATTTTTGACATGAGAAAATATGAACAAT
1 TTCAATAGGCAAAATTTTGACATGAGAAAATATGAACAAT
*
47548846 TTCAATAGGCAAAATTTTGACGTGAGAAAATATGAACAA
1 TTCAATAGGCAAAATTTTGACATGAGAAAATATGAACAA
47548885 GAGATGAATT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.46, C:0.10, G:0.16, T:0.28
Consensus pattern (40 bp):
TTCAATAGGCAAAATTTTGACATGAGAAAATATGAACAAT
Found at i:47550221 original size:12 final size:13
Alignment explanation
Indices: 47550206--47550237 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
47550196 ATAACACATT
47550206 TCAAAAC-ATGCA
1 TCAAAACTATGCA
47550218 TCAAAACTATGCA
1 TCAAAACTATGCA
47550231 -CAAAACT
1 TCAAAACT
47550238 TAACATTTGC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 14 0.74
13 5 0.26
ACGTcount: A:0.50, C:0.25, G:0.06, T:0.19
Consensus pattern (13 bp):
TCAAAACTATGCA
Found at i:47553040 original size:42 final size:43
Alignment explanation
Indices: 47552940--47553096 Score: 140
Period size: 42 Copynumber: 3.7 Consensus size: 43
47552930 GACAAGTACA
* * * **
47552940 ATGCCGACGTCCCAGACGTGGTCTTACATGTAATTCAGTATCG
1 ATGCCGATGTCCCAGACATGGTCTTACACGTAAAACAGTATCG
** *
47552983 ATGCCTCTGTCCCAGACATGGTCTTATACG-AAAACAG-ATACG
1 ATGCCGATGTCCCAGACATGGTCTTACACGTAAAACAGTAT-CG
* ** **
47553025 ATGCCGATGTCCCAGACATGGTCTTACATGTAAATTTAAAATCG
1 ATGCCGATGTCCCAGACATGGTCTTACACGTAAA-ACAGTATCG
*
47553069 ATGCCTG-TGTCCCAGACACGGTCTTACA
1 ATGCC-GATGTCCCAGACATGGTCTTACA
47553097 TGATAATTCA
Statistics
Matches: 93, Mismatches: 16, Indels: 9
0.79 0.14 0.08
Matches are distributed among these distances:
41 2 0.02
42 33 0.35
43 27 0.29
44 28 0.30
45 3 0.03
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (43 bp):
ATGCCGATGTCCCAGACATGGTCTTACACGTAAAACAGTATCG
Found at i:47553086 original size:44 final size:43
Alignment explanation
Indices: 47552948--47553098 Score: 150
Period size: 44 Copynumber: 3.5 Consensus size: 43
47552938 CAATGCCGAC
* ** *
47552948 GTCCCAGACGTGGTCTTACATGT-AATTCAGTATCGATGCCTCT
1 GTCCCAGACATGGTCTTACATGTAAATT-AAAATCGATGCCTGT
* * *
47552991 GTCCCAGACATGGTCTTATACG-AAA--ACAGATACGATGCC-GAT
1 GTCCCAGACATGGTCTTACATGTAAATTA-AAAT-CGATGCCTG-T
47553033 GTCCCAGACATGGTCTTACATGTAAATTTAAAATCGATGCCTGT
1 GTCCCAGACATGGTCTTACATGTAAA-TTAAAATCGATGCCTGT
*
47553077 GTCCCAGACACGGTCTTACATG
1 GTCCCAGACATGGTCTTACATG
47553099 ATAATTCAGG
Statistics
Matches: 89, Mismatches: 10, Indels: 17
0.77 0.09 0.15
Matches are distributed among these distances:
40 1 0.01
41 2 0.02
42 28 0.31
43 24 0.27
44 29 0.33
45 4 0.04
46 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.28
Consensus pattern (43 bp):
GTCCCAGACATGGTCTTACATGTAAATTAAAATCGATGCCTGT
Found at i:47570015 original size:43 final size:43
Alignment explanation
Indices: 47569871--47570074 Score: 163
Period size: 43 Copynumber: 4.9 Consensus size: 43
47569861 TTTTATCAAA
* * * * *
47569871 TCACCAGCATT-TAGCCTGCTAGGTTTTAAACCCGA-ATTCA-
1 TCACCGGCATTATAGCCTGCTAGGCTTGAAGCCCGATACTCAT
** * * * *
47569911 TCACCGGCACGA-AGCCTGCTAGACTTTAAGTCTGA-ACTCAT
1 TCACCGGCATTATAGCCTGCTAGGCTTGAAGCCCGATACTCAT
* *
47569952 TCACCGGTATT-TCGCCTGCTAGGCTTGAAGCCCGATA-TCATT
1 TCACCGGCATTATAGCCTGCTAGGCTTGAAGCCCGATACTCA-T
** * *
47569994 TCACCGGCATTATAGCCTGCTAGGCCCGAAGCCTGATAAT-AT
1 TCACCGGCATTATAGCCTGCTAGGCTTGAAGCCCGATACTCAT
**
47570036 CTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATA
1 -TCACCGGCATTATAGCCTGCTAGGCTTGAAGCCCGATA
47570075 ATATTATTCA
Statistics
Matches: 133, Mismatches: 23, Indels: 13
0.79 0.14 0.08
Matches are distributed among these distances:
40 30 0.23
41 29 0.22
42 13 0.10
43 60 0.45
44 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.20, T:0.25
Consensus pattern (43 bp):
TCACCGGCATTATAGCCTGCTAGGCTTGAAGCCCGATACTCAT
Found at i:47570114 original size:43 final size:43
Alignment explanation
Indices: 47569951--47570115 Score: 185
Period size: 43 Copynumber: 3.9 Consensus size: 43
47569941 TCTGAACTCA
* * **
47569951 TTCACCGGTATT-TCGCCTGCTAGGCTTGAAGCCCGAT-ATCAT
1 TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATAAT-AT
*
47569993 TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCTGATAATAT
1 TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATAATAT
*
47570036 CTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATAATATT
1 TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATAATA-T
* * * *
47570080 ATTCACCAGC-TTAAAGCTTGCTAGG-CCGAGGCCCGA
1 -TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGA
47570116 ATATCACATT
Statistics
Matches: 107, Mismatches: 12, Indels: 7
0.85 0.10 0.06
Matches are distributed among these distances:
42 11 0.10
43 73 0.68
44 16 0.15
45 7 0.07
ACGTcount: A:0.24, C:0.30, G:0.22, T:0.25
Consensus pattern (43 bp):
TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATAATAT
Found at i:47570684 original size:80 final size:81
Alignment explanation
Indices: 47570565--47570723 Score: 198
Period size: 80 Copynumber: 2.0 Consensus size: 81
47570555 CCTTGTCTCA
* * *
47570565 ATGTCTATTTCAATTCAAAAAGTATAGCCACATTCGGCTC-AATTTATTTATTCAAACACACATG
1 ATGTCTATTTCAATTCAAAAAGTATAGCCACATTCGGCTCTAA-TCATTTATCCAAACACACATC
47570629 CAGCACATTATATTTCT
65 CAGCACATTATATTTCT
* * * * *
47570646 ATGTCTATTTCAGATT-AATAA-TTTAGCCACATTTGGCTCTAATCATTTCTCCAAACATACATC
1 ATGTCTATTTCA-ATTCAAAAAGTATAGCCACATTCGGCTCTAATCATTTATCCAAACACACATC
*
47570709 CATCACATTATATTT
65 CAGCACATTATATTT
47570724 ATACATCTAT
Statistics
Matches: 67, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
80 46 0.69
81 18 0.27
82 3 0.04
ACGTcount: A:0.33, C:0.21, G:0.08, T:0.38
Consensus pattern (81 bp):
ATGTCTATTTCAATTCAAAAAGTATAGCCACATTCGGCTCTAATCATTTATCCAAACACACATCC
AGCACATTATATTTCT
Found at i:47575323 original size:38 final size:38
Alignment explanation
Indices: 47575243--47575413 Score: 186
Period size: 38 Copynumber: 4.4 Consensus size: 38
47575233 TCCAGTCACT
* * * *
47575243 AGCACTAAGCCTGCGGGACTTTAAGCTCAGATATAATACC
1 AGCACTAAGCCTACGGGA-TTTAA-CCCGGATATAATTCC
*
47575283 AGCACTAGGCCTACGGGATTTAACCCGGATATAATTCC
1 AGCACTAAGCCTACGGGATTTAACCCGGATATAATTCC
* *
47575321 AGCACGAAGCCTACGGGATTTAACCCGAATAT-ATTACC
1 AGCACTAAGCCTACGGGATTTAACCCGGATATAATT-CC
* *
47575359 AGCA-TGAAGCCTGCGGGATTTAACCCGGATATAATTCT
1 AGCACT-AAGCCTACGGGATTTAACCCGGATATAATTCC
*
47575397 AGCA-TACAGCCTGCGGG
1 AGCACTA-AGCCTACGGG
47575414 TCTTTAAGCC
Statistics
Matches: 115, Mismatches: 12, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
37 4 0.03
38 87 0.76
39 8 0.07
40 16 0.14
ACGTcount: A:0.30, C:0.25, G:0.22, T:0.22
Consensus pattern (38 bp):
AGCACTAAGCCTACGGGATTTAACCCGGATATAATTCC
Found at i:47576731 original size:44 final size:44
Alignment explanation
Indices: 47576681--47576770 Score: 180
Period size: 44 Copynumber: 2.0 Consensus size: 44
47576671 ATAATCTCAA
47576681 TACAATACATCATGCTCAAATCATTATTCAAGTTCAAATTCGGC
1 TACAATACATCATGCTCAAATCATTATTCAAGTTCAAATTCGGC
47576725 TACAATACATCATGCTCAAATCATTATTCAAGTTCAAATTCGGC
1 TACAATACATCATGCTCAAATCATTATTCAAGTTCAAATTCGGC
47576769 TA
1 TA
47576771 ACACACATAT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 46 1.00
ACGTcount: A:0.37, C:0.22, G:0.09, T:0.32
Consensus pattern (44 bp):
TACAATACATCATGCTCAAATCATTATTCAAGTTCAAATTCGGC
Found at i:47582199 original size:10 final size:10
Alignment explanation
Indices: 47582186--47582212 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
47582176 CAAAAAGGTC
47582186 GAACAAGGAT
1 GAACAAGGAT
47582196 GAACAAGGAT
1 GAACAAGGAT
47582206 GAACAAG
1 GAACAAG
47582213 CCTTGTCCTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.52, C:0.11, G:0.30, T:0.07
Consensus pattern (10 bp):
GAACAAGGAT
Found at i:47585660 original size:40 final size:40
Alignment explanation
Indices: 47585607--47585791 Score: 300
Period size: 40 Copynumber: 4.6 Consensus size: 40
47585597 ACTACTTGCT
* *
47585607 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
47585647 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
47585687 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
47585727 CAAATGCCTTTGGGACTTAGCCCGGA-ATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
*
47585767 CAAATTCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
47585792 TTATCATCTG
Statistics
Matches: 137, Mismatches: 7, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
39 1 0.01
40 136 0.99
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:47588574 original size:27 final size:27
Alignment explanation
Indices: 47588544--47588721 Score: 180
Period size: 27 Copynumber: 6.6 Consensus size: 27
47588534 ATATTGAGCC
* * *
47588544 CGCACACTCAGTGCTATATATTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
* * * *
47588571 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAACT
47588598 CGCACACTTAGTGCTACATAGTCAGACT
1 CGCACACTTAGTGCTACATAGTCA-ACT
** * *
47588626 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
* **
47588653 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAACT
*
47588680 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAGTC-AACT
47588707 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
47588722 GTACAATTTA
Statistics
Matches: 126, Mismatches: 21, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
27 101 0.80
28 25 0.20
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:47588683 original size:82 final size:81
Alignment explanation
Indices: 47588565--47588720 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
47588555 TGCTATATAT
* * *
47588565 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTCAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTC-GAATCGCA
47588630 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
47588647 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTCGAATCGCA
47588711 CACTTAGTGC
65 CACTTAGTGC
47588721 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 19 0.29
82 47 0.71
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTCGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:47596730 original size:26 final size:27
Alignment explanation
Indices: 47596701--47596876 Score: 115
Period size: 27 Copynumber: 6.6 Consensus size: 27
47596691 ATATTGAGCC
* * * *
47596701 CGCACACTCAGTGCTA-TTATTCAACT
1 CGCACACTTAGTGCTACGTAATCAAAT
*
47596727 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACGTAATCAAAT
* * *
47596754 CGCACACTTAGTGCTACAT-AGCAGACT
1 CGCACACTTAGTGCTACGTAATCA-AAT
** * ** *
47596781 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACGTAATCAAAT
* * **
47596808 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CGTAATCAAAT
* * * *
47596835 CGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTACGTAATCAAAT
47596862 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
47596877 TACAATTTAA
Statistics
Matches: 122, Mismatches: 23, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
26 17 0.14
27 102 0.84
28 3 0.02
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACGTAATCAAAT
Found at i:47596759 original size:27 final size:27
Alignment explanation
Indices: 47596721--47596875 Score: 143
Period size: 27 Copynumber: 5.7 Consensus size: 27
47596711 GTGCTATTAT
* *
47596721 TCAACTCGCACACTTAGTGCCACGTAA
1 TCAAATCGCACACTTAGTGCCACATAA
*
47596748 TCAAATCGCACACTTAGTGCTACAT-A
1 TCAAATCGCACACTTAGTGCCACATAA
* * * **
47596774 GCAGACTCGCACACTTAGTGCCGCATGG
1 TCA-AATCGCACACTTAGTGCCACATAA
* *
47596802 TCAATTCGCACACTTAGTG-CATCATAT
1 TCAAATCGCACACTTAGTGCCA-CATAA
** * *
47596829 TCATTTCGCACACTTAGTGCAACATAG
1 TCAAATCGCACACTTAGTGCCACATAA
*
47596856 TCGAATCGCACACTTAGTGC
1 TCAAATCGCACACTTAGTGC
47596876 TTACAATTTA
Statistics
Matches: 105, Mismatches: 19, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
26 4 0.04
27 98 0.93
28 3 0.03
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (27 bp):
TCAAATCGCACACTTAGTGCCACATAA
Found at i:47596792 original size:54 final size:55
Alignment explanation
Indices: 47596701--47596876 Score: 200
Period size: 54 Copynumber: 3.3 Consensus size: 55
47596691 ATATTGAGCC
* * * *
47596701 CGCACACTCAGTGCTAT--TATTCAACTCGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTATCATATGCAACTCGCACACTTAGTGCCACATAGTCAAAT
* * *
47596754 CGCACACTTAGTGCTA-CATA-GCAGACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTATCATATGCA-ACTCGCACACTTAGTGCCACATAGTCAAAT
* ** * *
47596808 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTATCATATGCAACTCGCACACTTAGTGCCACATAGTCAAAT
47596862 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
47596877 TACAATTTAA
Statistics
Matches: 102, Mismatches: 15, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
53 18 0.18
54 82 0.80
55 2 0.02
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.27
Consensus pattern (55 bp):
CGCACACTTAGTGCTATCATATGCAACTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:47596817 original size:81 final size:81
Alignment explanation
Indices: 47596721--47596875 Score: 215
Period size: 81 Copynumber: 1.9 Consensus size: 81
47596711 GTGCTATTAT
* * *
47596721 TCAACTCGCACACTTAGTGCCA-CGTAATCAAATCGCACACTTAGTGCTACATAG-CAGACTCGC
1 TCAACTCGCACACTTAGTG-CATCATAATCAAATCGCACACTTAGTGCAACATAGTC-GAATCGC
47596784 ACACTTAGTGCCGCATGG
64 ACACTTAGTGCCGCATGG
* * **
47596802 TCAATTCGCACACTTAGTGCATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCAC
1 TCAACTCGCACACTTAGTGCATCATAATCAAATCGCACACTTAGTGCAACATAGTCGAATCGCAC
47596867 ACTTAGTGC
66 ACTTAGTGC
47596876 TTACAATTTA
Statistics
Matches: 65, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
80 2 0.03
81 62 0.95
82 1 0.02
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCATCATAATCAAATCGCACACTTAGTGCAACATAGTCGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:47602559 original size:44 final size:44
Alignment explanation
Indices: 47602509--47602598 Score: 180
Period size: 44 Copynumber: 2.0 Consensus size: 44
47602499 ATAATCTCAA
47602509 TACAATACATCATGCTCAAATCATTATTCAAGTTCAAATTCGGC
1 TACAATACATCATGCTCAAATCATTATTCAAGTTCAAATTCGGC
47602553 TACAATACATCATGCTCAAATCATTATTCAAGTTCAAATTCGGC
1 TACAATACATCATGCTCAAATCATTATTCAAGTTCAAATTCGGC
47602597 TA
1 TA
47602599 ACACACATAT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 46 1.00
ACGTcount: A:0.37, C:0.22, G:0.09, T:0.32
Consensus pattern (44 bp):
TACAATACATCATGCTCAAATCATTATTCAAGTTCAAATTCGGC
Found at i:47605599 original size:43 final size:43
Alignment explanation
Indices: 47605525--47605648 Score: 160
Period size: 43 Copynumber: 2.9 Consensus size: 43
47605515 TTTGAACTCA
* * *
47605525 TTCACTGGCATT-TCGCCTGCTAGGCTTGAAGCCCGATATCAT
1 TTCACCGGCATTATAGCCTGCTAGGCCTGAAGCCCGATATCAT
* * *
47605567 TTCACCGGCATTATAGCCTACTAGGCCCGAAGCCCGATATTAT
1 TTCACCGGCATTATAGCCTGCTAGGCCTGAAGCCCGATATCAT
* * *
47605610 CTCATCGGCATTATAGCCTGCTCGGCCTGAAGCCCGATA
1 TTCACCGGCATTATAGCCTGCTAGGCCTGAAGCCCGATA
47605649 ATATTATTCA
Statistics
Matches: 70, Mismatches: 11, Indels: 1
0.85 0.13 0.01
Matches are distributed among these distances:
42 11 0.16
43 59 0.84
ACGTcount: A:0.22, C:0.31, G:0.21, T:0.27
Consensus pattern (43 bp):
TTCACCGGCATTATAGCCTGCTAGGCCTGAAGCCCGATATCAT
Found at i:47607388 original size:14 final size:15
Alignment explanation
Indices: 47607359--47607388 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
47607349 CAAAATTTAG
47607359 ACATGATACTTTCAC
1 ACATGATACTTTCAC
47607374 ACATGATAC-TTCAC
1 ACATGATACTTTCAC
47607388 A
1 A
47607389 TATAATAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.37, C:0.27, G:0.07, T:0.30
Consensus pattern (15 bp):
ACATGATACTTTCAC
Found at i:47616887 original size:54 final size:54
Alignment explanation
Indices: 47616815--47616922 Score: 189
Period size: 54 Copynumber: 2.0 Consensus size: 54
47616805 AATGGGTAGT
*
47616815 AAAAATCTGATTTAATGAAAAATTTGGACTGATATGAGCATATATATGGTTCAG
1 AAAAATCTGAGTTAATGAAAAATTTGGACTGATATGAGCATATATATGGTTCAG
* *
47616869 AAAAATCTGAGTTGATGAAAAATTTGGGCTGATATGAGCATATATATGGTTCAG
1 AAAAATCTGAGTTAATGAAAAATTTGGACTGATATGAGCATATATATGGTTCAG
47616923 CTAGGCTTAG
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
54 51 1.00
ACGTcount: A:0.39, C:0.07, G:0.21, T:0.32
Consensus pattern (54 bp):
AAAAATCTGAGTTAATGAAAAATTTGGACTGATATGAGCATATATATGGTTCAG
Found at i:47620325 original size:54 final size:54
Alignment explanation
Indices: 47620253--47620360 Score: 189
Period size: 54 Copynumber: 2.0 Consensus size: 54
47620243 AATGGGTAGT
*
47620253 AAAAATCTGATTTAATGAAAAATTTGGACTGATATGAGCATATATATGGTTCAG
1 AAAAATCTGAGTTAATGAAAAATTTGGACTGATATGAGCATATATATGGTTCAG
* *
47620307 AAAAATCTGAGTTGATGAAAAATTTGGGCTGATATGAGCATATATATGGTTCAG
1 AAAAATCTGAGTTAATGAAAAATTTGGACTGATATGAGCATATATATGGTTCAG
47620361 CTAGGCTTAG
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
54 51 1.00
ACGTcount: A:0.39, C:0.07, G:0.21, T:0.32
Consensus pattern (54 bp):
AAAAATCTGAGTTAATGAAAAATTTGGACTGATATGAGCATATATATGGTTCAG
Found at i:47624511 original size:14 final size:16
Alignment explanation
Indices: 47624487--47624519 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
47624477 ATTTTCTGTG
47624487 TTTATTATGTG-TAAA
1 TTTATTATGTGCTAAA
47624502 TTTA-TATGTGCTAAA
1 TTTATTATGTGCTAAA
47624517 TTT
1 TTT
47624520 TCGTGTTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 6 0.35
15 11 0.65
ACGTcount: A:0.30, C:0.03, G:0.12, T:0.55
Consensus pattern (16 bp):
TTTATTATGTGCTAAA
Found at i:47627942 original size:42 final size:43
Alignment explanation
Indices: 47627895--47628074 Score: 206
Period size: 42 Copynumber: 4.2 Consensus size: 43
47627885 ACTATAGAAC
* *
47627895 ATGACCTTTAGCGGCGCTTTTCCTGTAAATGCCGC-AAATACG
1 ATGACCTTTAGCGGCGCTTTTCCTGCAAATGCCGCTAAAGACG
*
47627937 ATGACCTTTAGCGGCGCTTTCCCTGCAAATGCCGCTAAAGACG
1 ATGACCTTTAGCGGCGCTTTTCCTGCAAATGCCGCTAAAGACG
*** * *
47627980 ATGACCTTTAGCGGCGCTTTTCCCAAAAACGCCGCTATAGAAC-
1 ATGACCTTTAGCGGCGCTTTTCCTGCAAATGCCGCTAAAG-ACG
** * *
47628023 A-GACCTTTAGCGATGCTTTTCCTACAAACGCCGCTAAAGAAC-
1 ATGACCTTTAGCGGCGCTTTTCCTGCAAATGCCGCTAAAG-ACG
47628065 ATGACCTTTA
1 ATGACCTTTA
47628075 AAAATATATA
Statistics
Matches: 121, Mismatches: 14, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
42 70 0.58
43 49 0.40
44 2 0.02
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.26
Consensus pattern (43 bp):
ATGACCTTTAGCGGCGCTTTTCCTGCAAATGCCGCTAAAGACG
Found at i:47628041 original size:85 final size:85
Alignment explanation
Indices: 47627890--47628074 Score: 225
Period size: 85 Copynumber: 2.2 Consensus size: 85
47627880 AAGCCACTAT
*** * *
47627890 AGAACATGACCTTTAGCGGCGCTTTTCCTGTAAATGCCGCAAATACGATGACCTTTAGCGGCGCT
1 AGAACATGACCTTTAGCGGCGCTTTTCCCAAAAACGCCGCAAATACGATGACCTTTAGCGACGCT
* *
47627955 TTCCCTGCAAATGCCGCTAA
66 TTCCCTACAAACGCCGCTAA
47627975 AG-ACGATGACCTTTAGCGGCGCTTTTCCCAAAAACGCCGCTATAGA-AC-A-GACCTTTAGCGA
1 AGAAC-ATGACCTTTAGCGGCGCTTTTCCCAAAAACGCCGC-A-A-ATACGATGACCTTTAGCGA
* *
47628036 TGCTTTTCCTACAAACGCCGCTAA
62 CGCTTTCCCTACAAACGCCGCTAA
47628060 AGAACATGACCTTTA
1 AGAACATGACCTTTA
47628075 AAAATATATA
Statistics
Matches: 86, Mismatches: 9, Indels: 10
0.82 0.09 0.10
Matches are distributed among these distances:
84 2 0.02
85 76 0.88
86 4 0.05
87 3 0.03
88 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (85 bp):
AGAACATGACCTTTAGCGGCGCTTTTCCCAAAAACGCCGCAAATACGATGACCTTTAGCGACGCT
TTCCCTACAAACGCCGCTAA
Found at i:47629944 original size:25 final size:25
Alignment explanation
Indices: 47629903--47629985 Score: 96
Period size: 25 Copynumber: 3.4 Consensus size: 25
47629893 CTGGAGGCCT
* * * *
47629903 AGCCTTTTTTAAT-AACTAGGGTAA
1 AGCCCTTTTTGATAAACTGGGGCAA
*
47629927 AGTCCTTTTTGATAAACTGGGGCAA
1 AGCCCTTTTTGATAAACTGGGGCAA
* *
47629952 AGCCCTTTTCGGTAAACTGGGGCAA
1 AGCCCTTTTTGATAAACTGGGGCAA
47629977 AGCCCTTTT
1 AGCCCTTTT
47629986 AGCACTTCCT
Statistics
Matches: 50, Mismatches: 8, Indels: 1
0.85 0.14 0.02
Matches are distributed among these distances:
24 10 0.20
25 40 0.80
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.33
Consensus pattern (25 bp):
AGCCCTTTTTGATAAACTGGGGCAA
Found at i:47630220 original size:27 final size:27
Alignment explanation
Indices: 47630190--47630404 Score: 236
Period size: 27 Copynumber: 8.0 Consensus size: 27
47630180 GGGGAAAAAT
* * *
47630190 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * *
47630217 GGTAATTCTACCCTATAGGGGTTTTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
47630244 GGTATTTCTACCCTACAAGGGTAATTC
1 GGTAATTCTACCCTACAAGGGTATTTC
47630271 GGTAATTCTACCCTAC-AGGTGTATTTC
1 GGTAATTCTACCCTACAAGG-GTATTTC
* *
47630298 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
47630325 GGTAACTCTACCCTA-TAGGGTTATTTC
1 GGTAATTCTACCCTACAAGGG-TATTTC
* *
47630352 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* **
47630379 GGTCATTCTACCCTACTGGGGTATTT
1 GGTAATTCTACCCTACAAGGGTATTT
47630405 TGATATTTTA
Statistics
Matches: 157, Mismatches: 27, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
26 6 0.04
27 146 0.93
28 5 0.03
ACGTcount: A:0.22, C:0.21, G:0.20, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:47630335 original size:81 final size:80
Alignment explanation
Indices: 47630190--47630404 Score: 261
Period size: 81 Copynumber: 2.6 Consensus size: 80
47630180 GGGGAAAAAT
* * * * * * **
47630190 GGTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTATAGGGGTTTTTTGGTATTTCTAC
1 GGTAATTCTACCCTAC-AGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAACTCTAC
47630255 CCTACAAGGG-TAATTC
65 CCTA-AAGGGTTAATTC
*
47630271 GGTAATTCTACCCTACAGGTGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTAACTCTAC
1 GGTAATTCTACCCTACAGG-GTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAACTCTAC
* *
47630336 CCTATAGGGTTATTTC
65 CCTAAAGGGTTAATTC
* * *
47630352 GGTAATTCTACCCTATAGGGGTATTTCGGTCATTCTACCCTACTGGGGTATTT
1 GGTAATTCTACCCTACA-GGGTATTTCGGTAATTCTACCCTACAGGGGTATTT
47630405 TGATATTTTA
Statistics
Matches: 116, Mismatches: 15, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
80 7 0.06
81 107 0.92
82 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.20, T:0.36
Consensus pattern (80 bp):
GGTAATTCTACCCTACAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAACTCTACC
CTAAAGGGTTAATTC
Found at i:47630602 original size:81 final size:81
Alignment explanation
Indices: 47630396--47630602 Score: 242
Period size: 81 Copynumber: 2.6 Consensus size: 81
47630386 CTACCCTACT
* * * * * *
47630396 GGGGTATTTTGAT-ATTTTACAAATCGAGAGTATTTT-GATAATTTCACAAATCAGGGGTATTTT
1 GGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAG-TAATTTTACAAATCAGGGGTATCTT
*
47630459 GGTAATTTTACAAGCTA
65 GGTAATTTTACAAGCGA
* *
47630476 GGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTAGTAATTTTACAAA-CTAGGGGTATCTT
1 GGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTACAAATC-AGGGGTATCTT
* *
47630540 GGTAATTTTACTGATCGA
65 GGTAATTTTAC-AAGCGA
**
47630558 -GGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTT
1 GGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTT
47630603 GTAAATTGAG
Statistics
Matches: 108, Mismatches: 15, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
80 13 0.12
81 91 0.84
82 4 0.04
ACGTcount: A:0.29, C:0.08, G:0.22, T:0.42
Consensus pattern (81 bp):
GGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTACAAATCAGGGGTATCTTG
GTAATTTTACAAGCGA
Found at i:47630607 original size:27 final size:27
Alignment explanation
Indices: 47630396--47630602 Score: 215
Period size: 27 Copynumber: 7.7 Consensus size: 27
47630386 CTACCCTACT
* *
47630396 GGGGTATTTTGAT-ATTTTACAAA-TC
1 GGGGTATTTTGGTAATTTTACAAACTA
* * *
47630421 GAGAGTATTTTGATAATTTCACAAA-TCA
1 G-GGGTATTTTGGTAATTTTACAAACT-A
*
47630449 GGGGTATTTTGGTAATTTTACAAGCTA
1 GGGGTATTTTGGTAATTTTACAAACTA
47630476 GGGGTATTTTGGTAATTTTACAAACTA
1 GGGGTATTTTGGTAATTTTACAAACTA
*
47630503 GGGGTATTTTAGTAATTTTACAAACTA
1 GGGGTATTTTGGTAATTTTACAAACTA
* ** *
47630530 GGGGTATCTTGGTAATTTTACTGA-TC
1 GGGGTATTTTGGTAATTTTACAAACTA
** *
47630556 GAGGGTATTTTGGTAATTTTGTAAACCA
1 G-GGGTATTTTGGTAATTTTACAAACTA
* *
47630584 AGGGTATTTTAGTAATTTT
1 GGGGTATTTTGGTAATTTT
47630603 GTAAATTGAG
Statistics
Matches: 153, Mismatches: 23, Indels: 10
0.82 0.12 0.05
Matches are distributed among these distances:
25 1 0.01
26 13 0.08
27 137 0.90
28 2 0.01
ACGTcount: A:0.29, C:0.08, G:0.22, T:0.42
Consensus pattern (27 bp):
GGGGTATTTTGGTAATTTTACAAACTA
Found at i:47630656 original size:27 final size:27
Alignment explanation
Indices: 47630618--47630773 Score: 206
Period size: 27 Copynumber: 5.8 Consensus size: 27
47630608 TTGAGAACGG
47630618 TAATTCTGTAAATCGAGGGTAAAATGA
1 TAATTCTGTAAATCGAGGGTAAAATGA
* * *
47630645 TAATTCTATAAATCAAGGGTAAAATGG
1 TAATTCTGTAAATCGAGGGTAAAATGA
* *
47630672 TAATTCTATAAATCGAGGGTAAAATGG
1 TAATTCTGTAAATCGAGGGTAAAATGA
* *
47630699 TAATTTTGTAAATCGAGGGTAAAA-CA
1 TAATTCTGTAAATCGAGGGTAAAATGA
* * *
47630725 GTAATTTTGTAAATCGAGGTTAAAACGA
1 -TAATTCTGTAAATCGAGGGTAAAATGA
47630753 TAATTCTGTAAATCGAGGGTA
1 TAATTCTGTAAATCGAGGGTA
47630774 TTTTGGTAAT
Statistics
Matches: 115, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
27 114 0.99
28 1 0.01
ACGTcount: A:0.40, C:0.08, G:0.21, T:0.31
Consensus pattern (27 bp):
TAATTCTGTAAATCGAGGGTAAAATGA
Found at i:47630686 original size:54 final size:54
Alignment explanation
Indices: 47630613--47630773 Score: 232
Period size: 54 Copynumber: 3.0 Consensus size: 54
47630603 GTAAATTGAG
* *
47630613 AACGGTAATTCTGTAAATCGAGGGTAAAATGATAATTCTATAAATCAAGGGTAA
1 AACGGTAATTCTGTAAATCGAGGGTAAAATGATAATTCTGTAAATCGAGGGTAA
* * * *
47630667 AATGGTAATTCTATAAATCGAGGGTAAAATGGTAATTTTGTAAATCGAGGGTAA
1 AACGGTAATTCTGTAAATCGAGGGTAAAATGATAATTCTGTAAATCGAGGGTAA
* * * *
47630721 AACAGTAATTTTGTAAATCGAGGTTAAAACGATAATTCTGTAAATCGAGGGTA
1 AACGGTAATTCTGTAAATCGAGGGTAAAATGATAATTCTGTAAATCGAGGGTA
47630774 TTTTGGTAAT
Statistics
Matches: 93, Mismatches: 14, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 93 1.00
ACGTcount: A:0.40, C:0.08, G:0.22, T:0.30
Consensus pattern (54 bp):
AACGGTAATTCTGTAAATCGAGGGTAAAATGATAATTCTGTAAATCGAGGGTAA
Found at i:47630783 original size:27 final size:27
Alignment explanation
Indices: 47630397--47630926 Score: 199
Period size: 27 Copynumber: 19.9 Consensus size: 27
47630387 TACCCTACTG
* **
47630397 GGGTATTTTGAT-ATTTTACAAATCGA
1 GGGTATTTTGGTAATTTTGTAAATCGA
* * ***
47630423 GAGTATTTTGATAATTTCACAAATC-A
1 GGGTATTTTGGTAATTTTGTAAATCGA
* *
47630449 GGGGTATTTTGGTAA-TTT-TACAAGCTA
1 -GGGTATTTTGGTAATTTTGTA-AATCGA
** *
47630476 GGGGTATTTTGGTAATTTTACAAA-CTA
1 -GGGTATTTTGGTAATTTTGTAAATCGA
* ** *
47630503 GGGGTATTTTAGTAATTTTACAAA-CTA
1 -GGGTATTTTGGTAATTTTGTAAATCGA
* * *
47630530 GGGGTATCTTGGTAATTTTACT-GATCGA
1 -GGGTATTTTGGTAATTTT-GTAAATCGA
* *
47630558 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTGTAAATCGA
* *
47630585 GGGTATTTTAGTAATTTTGTAAATTGA
1 GGGTATTTTGGTAATTTTGTAAATCGA
** *
47630612 --G-A--ACGGTAATTCTGTAAATCGA
1 GGGTATTTTGGTAATTTTGTAAATCGA
*** * * * *
47630634 GGGTAAAATGATAATTCTATAAATCAA
1 GGGTATTTTGGTAATTTTGTAAATCGA
*** * *
47630661 GGGTAAAATGGTAATTCTATAAATCGA
1 GGGTATTTTGGTAATTTTGTAAATCGA
***
47630688 GGGTAAAATGGTAATTTTGTAAATCGA
1 GGGTATTTTGGTAATTTTGTAAATCGA
*****
47630715 GGGTAAAACAGTAATTTTGTAAATCGA
1 GGGTATTTTGGTAATTTTGTAAATCGA
* **** * *
47630742 GGTTAAAACGATAATTCTGTAAATCGA
1 GGGTATTTTGGTAATTTTGTAAATCGA
** *
47630769 GGGTATTTTGGTAATTTTACAAATTGA
1 GGGTATTTTGGTAATTTTGTAAATCGA
* **
47630796 GGGCATTTCAGTAA-TTT-TACAATCGA
1 GGGTATTTTGGTAATTTTGTA-AATCGA
* * * *
47630822 CGGTATTTCGGTAATTTTATAAA-CTGG
1 GGGTATTTTGGTAATTTTGTAAATC-GA
* ** *
47630849 GGGTACTTTGGTAATTTTACAAGTCGA
1 GGGTATTTTGGTAATTTTGTAAATCGA
* ** **
47630876 AGGTATTTCAGTAATTTTACAAATCGA
1 GGGTATTTTGGTAATTTTGTAAATCGA
* *
47630903 TGGTATTTTAGTAATTTTAGTAAA
1 GGGTATTTTGGTAATTTT-GTAAA
47630927 CTAAAGTATT
Statistics
Matches: 407, Mismatches: 77, Indels: 38
0.78 0.15 0.07
Matches are distributed among these distances:
22 15 0.04
24 2 0.00
25 4 0.01
26 38 0.09
27 334 0.82
28 13 0.03
29 1 0.00
ACGTcount: A:0.33, C:0.08, G:0.21, T:0.38
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTGTAAATCGA
Found at i:47630829 original size:53 final size:52
Alignment explanation
Indices: 47630763--47630921 Score: 183
Period size: 53 Copynumber: 3.0 Consensus size: 52
47630753 TAATTCTGTA
* * *
47630763 AATCGAGGGTATTTTGGTAATTTTACAAATTGAGGGCATTTCAGTAATTTTAC
1 AATCGAAGGTATTTCGGTAATTTTACAAATTGAGGGTATTT-AGTAATTTTAC
* * * * *
47630816 AATCGACGGTATTTCGGTAATTTTATAAACTGGGGGTACTTTGGTAATTTTAC
1 AATCGAAGGTATTTCGGTAATTTTACAAATTGAGGGTA-TTTAGTAATTTTAC
* * *
47630869 AAGTCGAAGGTATTTCAGTAATTTTACAAATCGATGGTATTTTAGTAATTTTA
1 AA-TCGAAGGTATTTCGGTAATTTTACAAATTGAGGGTA-TTTAGTAATTTTA
47630922 GTAAACTAAA
Statistics
Matches: 88, Mismatches: 16, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
53 44 0.50
54 44 0.50
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.40
Consensus pattern (52 bp):
AATCGAAGGTATTTCGGTAATTTTACAAATTGAGGGTATTTAGTAATTTTAC
Found at i:47630863 original size:80 final size:82
Alignment explanation
Indices: 47630769--47630928 Score: 234
Period size: 80 Copynumber: 2.0 Consensus size: 82
47630759 TGTAAATCGA
* * * *
47630769 GGGTATTTTGGTAATTTTACAAATTGAGGGCATTTCAGTAATTTTAC-AATCGACGGTATTTCGG
1 GGGTACTTTGGTAATTTTACAAATCGAAGGCATTTCAGTAATTTTACAAATCGACGGTATTTCAG
47630833 TAATTTTA-TAAACTGG
66 TAATTTTAGTAAACTGG
* * * *
47630849 GGGTACTTTGGTAATTTTACAAGTCGAAGGTATTTCAGTAATTTTACAAATCGATGGTATTTTAG
1 GGGTACTTTGGTAATTTTACAAATCGAAGGCATTTCAGTAATTTTACAAATCGACGGTATTTCAG
47630914 TAATTTTAGTAAACT
66 TAATTTTAGTAAACT
47630929 AAAGTATTCT
Statistics
Matches: 70, Mismatches: 8, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
80 42 0.60
81 22 0.31
82 6 0.09
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (82 bp):
GGGTACTTTGGTAATTTTACAAATCGAAGGCATTTCAGTAATTTTACAAATCGACGGTATTTCAG
TAATTTTAGTAAACTGG
Found at i:47632628 original size:24 final size:25
Alignment explanation
Indices: 47632601--47632652 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 25
47632591 GCCTAGCCTC
47632601 TTTTAAT-AACTGCAGCAAAGCCCT
1 TTTTAATAAACTGCAGCAAAGCCCT
* ** *
47632625 TTTTGATAAACTGGGGCAAAGCTCT
1 TTTTAATAAACTGCAGCAAAGCCCT
47632650 TTT
1 TTT
47632653 CGGTAAACTG
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
24 6 0.26
25 17 0.74
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.35
Consensus pattern (25 bp):
TTTTAATAAACTGCAGCAAAGCCCT
Found at i:47632643 original size:25 final size:25
Alignment explanation
Indices: 47632615--47632702 Score: 131
Period size: 25 Copynumber: 3.5 Consensus size: 25
47632605 AATAACTGCA
* *
47632615 GCAAAGCCCTTTTTGATAAACTGGG
1 GCAAAGCCCTTTTCGGTAAACTGGG
*
47632640 GCAAAGCTCTTTTCGGTAAACTGGG
1 GCAAAGCCCTTTTCGGTAAACTGGG
*
47632665 GCAAAGCCCTCTTCGGTAAACTGGG
1 GCAAAGCCCTTTTCGGTAAACTGGG
*
47632690 TCAAAGCCCTTTT
1 GCAAAGCCCTTTT
47632703 AGCACTTCCT
Statistics
Matches: 56, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 56 1.00
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.27
Consensus pattern (25 bp):
GCAAAGCCCTTTTCGGTAAACTGGG
Found at i:47633204 original size:27 final size:27
Alignment explanation
Indices: 47632907--47633202 Score: 430
Period size: 27 Copynumber: 11.0 Consensus size: 27
47632897 GGGGAAAAAT
* * * *
47632907 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
47632934 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
47632961 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
47632988 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
47633015 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
** *
47633042 GGTAATTCTACCCTTTAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
47633069 GGTAATTCTACCCTATAGGGTTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
47633096 GGTAATTCTACCCTACAGGGTTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
47633123 GGTAATTCTACCGTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
47633150 AGTAATTCTACCCTACAAGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
47633177 GGTAATTCTACCCTACAGGGGTATTT
1 GGTAATTCTACCCTACAGGGGTATTT
47633203 TGATATTTTA
Statistics
Matches: 244, Mismatches: 25, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 244 1.00
ACGTcount: A:0.23, C:0.20, G:0.20, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:47633297 original size:54 final size:53
Alignment explanation
Indices: 47633138--47633373 Score: 194
Period size: 54 Copynumber: 4.4 Consensus size: 53
47633128 TTCTACCGTA
* * ** **
47633138 CAGGGGTATTTCAGTAATTCTACCCTA-CAAGGGTATTTTGGTAATTCTAC-CCT
1 CAGGGGTATTTTAGTAATTTTA-CAAACCAAGGGTATTTTGGTAATT-TACAAAT
* * * * * *
47633191 ACAGGGGTATTTT-G-ATATTTTACAAATCGAGAGCATTTCGATAATTTCACAAAT
1 -CAGGGGTATTTTAGTA-ATTTTACAAACCAAGGGTATTTTGGTAATTT-ACAAAT
* * *
47633245 CAGGGGTATTTTGGTAATTTTACAAGCCAAGGGTATTTTGGTAACTTTACAAAC
1 CAGGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGTAA-TTTACAAAT
* * **
47633299 CAGGAGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACTGAT
1 CAGGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGTAA-TTTACAAAT
47633353 C-GAGGGTATTTTAGTAATTTT
1 CAG-GGGTATTTTAGTAATTTT
47633374 GTAAATTAAG
Statistics
Matches: 146, Mismatches: 28, Indels: 16
0.77 0.15 0.08
Matches are distributed among these distances:
52 4 0.03
53 35 0.24
54 103 0.71
55 4 0.03
ACGTcount: A:0.29, C:0.13, G:0.20, T:0.38
Consensus pattern (53 bp):
CAGGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGTAATTTACAAAT
Found at i:47633359 original size:27 final size:26
Alignment explanation
Indices: 47633167--47633373 Score: 166
Period size: 27 Copynumber: 7.7 Consensus size: 26
47633157 CTACCCTACA
* **
47633167 AGGGTATTTTGGTAATTCTACCCTA-C
1 AGGGTATTTTGGTAATTTTA-CAAACC
* *
47633193 AGGGGTATTTTGAT-ATTTTACAAATCG
1 A-GGGTATTTTGGTAATTTTACAAA-CC
* * * * * *
47633220 AGAGCATTTCGATAATTTCACAAATC
1 AGGGTATTTTGGTAATTTTACAAACC
*
47633246 AGGGGTATTTTGGTAATTTTACAAGCC
1 A-GGGTATTTTGGTAATTTTACAAACC
*
47633273 AAGGGTATTTTGGTAACTTTACAAACC
1 -AGGGTATTTTGGTAATTTTACAAACC
*
47633300 AGGAGTATTTTAGTAATTTTACAAACC
1 AGG-GTATTTTGGTAATTTTACAAACC
* * *
47633327 AGGGGTATTTTGGTAATTTTACTGATCG
1 A-GGGTATTTTGGTAATTTTAC-AAACC
*
47633355 AGGGTATTTTAGTAATTTT
1 AGGGTATTTTGGTAATTTT
47633374 GTAAATTAAG
Statistics
Matches: 145, Mismatches: 27, Indels: 17
0.77 0.14 0.09
Matches are distributed among these distances:
25 2 0.01
26 19 0.13
27 118 0.81
28 6 0.04
ACGTcount: A:0.29, C:0.12, G:0.20, T:0.39
Consensus pattern (26 bp):
AGGGTATTTTGGTAATTTTACAAACC
Found at i:47633397 original size:27 final size:27
Alignment explanation
Indices: 47633367--47633546 Score: 261
Period size: 27 Copynumber: 6.7 Consensus size: 27
47633357 GGTATTTTAG
* **
47633367 TAATTTTGTAAATTAAGGGTAAAACGA
1 TAATTCTGTAAATCGAGGGTAAAACGA
47633394 TAATTCTGTAAATCGAGGGTAAAACGA
1 TAATTCTGTAAATCGAGGGTAAAACGA
* * * *
47633421 TAATTCTATAAACCGAGGGTAAAATGG
1 TAATTCTGTAAATCGAGGGTAAAACGA
* * *
47633448 TAATTCTATAAATCGAGGGTAAAATGG
1 TAATTCTGTAAATCGAGGGTAAAACGA
*
47633475 TAATTCTGTAAATCGAGGGTAAAACAA
1 TAATTCTGTAAATCGAGGGTAAAACGA
47633502 TAATTCTGTAAATCGAGGGTAAAACGA
1 TAATTCTGTAAATCGAGGGTAAAACGA
47633529 TAATTCTGTAAATCGAGG
1 TAATTCTGTAAATCGAGG
47633547 ATACTTTGGT
Statistics
Matches: 140, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 140 1.00
ACGTcount: A:0.41, C:0.09, G:0.21, T:0.28
Consensus pattern (27 bp):
TAATTCTGTAAATCGAGGGTAAAACGA
Found at i:47633568 original size:27 final size:27
Alignment explanation
Indices: 47633538--47633698 Score: 134
Period size: 27 Copynumber: 6.0 Consensus size: 27
47633528 ATAATTCTGT
*
47633538 AAATCGAGGATACTTT-GGTAATTTTAC
1 AAATCGAGGATA-TTTCAGTAATTTTAC
* **
47633565 AAATTGAGGCCATTTCAGTAATTTTAC
1 AAATCGAGGATATTTCAGTAATTTTAC
* * *
47633592 -AATCAACGATATTTCGGTAATTTTAC
1 AAATCGAGGATATTTCAGTAATTTTAC
* *
47633618 AAGTCTG-GGGTACTTTC-GTAATTTTAC
1 AAATC-GAGGATA-TTTCAGTAATTTTAC
* * *
47633645 AAGTTGAAGG-TATTTCAATAATTTTAC
1 AAATCG-AGGATATTTCAGTAATTTTAC
*
47633672 AAATCGAGGGTATTTCAGTAATTTTAC
1 AAATCGAGGATATTTCAGTAATTTTAC
47633699 TAAACTAAAG
Statistics
Matches: 107, Mismatches: 19, Indels: 16
0.75 0.13 0.11
Matches are distributed among these distances:
26 31 0.29
27 70 0.65
28 6 0.06
ACGTcount: A:0.32, C:0.12, G:0.17, T:0.39
Consensus pattern (27 bp):
AAATCGAGGATATTTCAGTAATTTTAC
Found at i:47633639 original size:80 final size:81
Alignment explanation
Indices: 47633548--47633698 Score: 207
Period size: 80 Copynumber: 1.9 Consensus size: 81
47633538 AAATCGAGGA
* * *
47633548 TACTTTGGTAATTTTACAAATTG-AGGCCATTTCAGTAATTTTAC-AATCAACGATATTTCGGTA
1 TACTTTCGTAATTTTACAAATTGAAGG-CATTTCAATAATTTTACAAATCAACGATATTTCAGTA
47633611 ATTTTACAAGTCTGGGG
65 ATTTTACAAGTCTGGGG
* * * * *
47633628 TACTTTCGTAATTTTACAAGTTGAAGGTATTTCAATAATTTTACAAATCGAGGGTATTTCAGTAA
1 TACTTTCGTAATTTTACAAATTGAAGGCATTTCAATAATTTTACAAATCAACGATATTTCAGTAA
47633693 TTTTAC
66 TTTTAC
47633699 TAAACTAAAG
Statistics
Matches: 61, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
80 36 0.59
81 25 0.41
ACGTcount: A:0.31, C:0.13, G:0.16, T:0.40
Consensus pattern (81 bp):
TACTTTCGTAATTTTACAAATTGAAGGCATTTCAATAATTTTACAAATCAACGATATTTCAGTAA
TTTTACAAGTCTGGGG
Found at i:47633711 original size:27 final size:27
Alignment explanation
Indices: 47633636--47633712 Score: 75
Period size: 27 Copynumber: 2.9 Consensus size: 27
47633626 GGTACTTTCG
* * *
47633636 TAATTTTACAAGTTGAAGGTATTTCAA
1 TAATTTTACAAATCGAAAGTATTTCAA
** *
47633663 TAATTTTACAAATCGAGGGTATTTCAG
1 TAATTTTACAAATCGAAAGTATTTCAA
*
47633690 TAATTTTACTAAA-CTAAAGTATT
1 TAATTTTAC-AAATCGAAAGTATT
47633713 ATAAACAAGC
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
27 39 0.93
28 3 0.07
ACGTcount: A:0.38, C:0.09, G:0.13, T:0.40
Consensus pattern (27 bp):
TAATTTTACAAATCGAAAGTATTTCAA
Found at i:47633712 original size:54 final size:53
Alignment explanation
Indices: 47633556--47633712 Score: 149
Period size: 54 Copynumber: 2.9 Consensus size: 53
47633546 GATACTTTGG
* ** * * **
47633556 TAATTTTACAAATTGAGGCCATTTCAGTAATTTTACAATC-AACGATATTTCGG
1 TAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAACTAAAG-TATTTCAA
* ** *
47633609 TAATTTTACAAGTCTG-GGGTACTTTC-GTAATTTTACAAGTTGAAGGTATTTCAA
1 TAATTTTACAAATC-GAGGGTA-TTTCAGTAATTTTACAAACT-AAAGTATTTCAA
47633663 TAATTTTACAAATCGAGGGTATTTCAGTAATTTTACTAAACTAAAGTATT
1 TAATTTTACAAATCGAGGGTATTTCAGTAATTTTAC-AAACTAAAGTATT
47633713 ATAAACAAGC
Statistics
Matches: 84, Mismatches: 13, Indels: 13
0.76 0.12 0.12
Matches are distributed among these distances:
53 32 0.38
54 46 0.55
55 6 0.07
ACGTcount: A:0.34, C:0.12, G:0.15, T:0.39
Consensus pattern (53 bp):
TAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAACTAAAGTATTTCAA
Found at i:47635981 original size:25 final size:25
Alignment explanation
Indices: 47635953--47636047 Score: 156
Period size: 25 Copynumber: 3.8 Consensus size: 25
47635943 CTATTTTAAT
* *
47635953 AACTGCGGCAAAGCCCTGTTT-GATA
1 AACTGGGGCAAAGCCCT-TTTCGGTA
47635978 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
47636003 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
47636028 AACTGGGGCAAAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
47636048 AGCACTTCCT
Statistics
Matches: 67, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
24 3 0.04
25 64 0.96
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.24
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGGTA
Found at i:47636525 original size:27 final size:27
Alignment explanation
Indices: 47636252--47636520 Score: 358
Period size: 27 Copynumber: 10.0 Consensus size: 27
47636242 AAGGAAAAAT
* * * *
47636252 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
47636279 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
47636306 GGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
** * * * *
47636333 AATAATTCTACGCTATAGGGGCATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
47636360 GGTAATTCTACCCTACAGGGTTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
47636387 GGTAATTCTACCCTACTGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
** *
47636414 GGTAATTCTACCCTACAGGATTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
47636441 GGTAATTCTACCCTACATGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
47636468 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
47636495 GATAATTCTACCCTACAGGGGTATTT
1 GGTAATTCTACCCTACAGGGGTATTT
47636521 TGATATTTTA
Statistics
Matches: 213, Mismatches: 29, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 213 1.00
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:47636571 original size:27 final size:27
Alignment explanation
Indices: 47636483--47636718 Score: 171
Period size: 27 Copynumber: 8.8 Consensus size: 27
47636473 TTCTACCCTA
* * **
47636483 CAGGGGTATTTCGATAATTCTACCCTA-
1 CAGGGGTATTTTGATAATTTTA-CAAAC
**
47636510 CAGGGGTATTTTGAT-ATTTTACAAGT
1 CAGGGGTATTTTGATAATTTTACAAAC
* * * *
47636536 C-GAGAGTATTTCGATAATTTCACAAAT
1 CAG-GGGTATTTTGATAATTTTACAAAC
*
47636563 CAGGGGTATTTT-AGTAATTTTACAAGC
1 CAGGGGTATTTTGA-TAATTTTACAAAC
*
47636590 CAGGGGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTTGATAATTTTACAAAC
*
47636617 CAGGGGTATTTT-AGTAATTTTATAAAC
1 CAGGGGTATTTTGA-TAATTTTACAAAC
* ** *
47636644 CAGGGGTATTTTGGTAATTTTACTGAT
1 CAGGGGTATTTTGATAATTTTACAAAC
* **
47636671 C-GAGGGTATTTTGGTAATTTTGTAAAC
1 CAG-GGGTATTTTGATAATTTTACAAAC
**
47636698 CAAAGGTATTTT-AGTAATTTT
1 CAGGGGTATTTTGA-TAATTTT
47636719 GTAAATCGAG
Statistics
Matches: 167, Mismatches: 31, Indels: 22
0.76 0.14 0.10
Matches are distributed among these distances:
25 2 0.01
26 18 0.11
27 146 0.87
28 1 0.01
ACGTcount: A:0.29, C:0.11, G:0.21, T:0.39
Consensus pattern (27 bp):
CAGGGGTATTTTGATAATTTTACAAAC
Found at i:47636608 original size:54 final size:54
Alignment explanation
Indices: 47636510--47636718 Score: 210
Period size: 54 Copynumber: 3.9 Consensus size: 54
47636500 TTCTACCCTA
* * * * *
47636510 CAGGGGTATTTT-G-ATATTTTACAAGTC-GAGAGTATTTCGATAATTTCACAAAT
1 CAGGGGTATTTTAGTA-ATTTTACAAGCCAG-GGGTATTTTGGTAATTTTACAAAT
*
47636563 CAGGGGTATTTTAGTAATTTTACAAGCCAGGGGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTTAGTAATTTTACAAGCCAGGGGTATTTTGGTAATTTTACAAAT
* * **
47636617 CAGGGGTATTTTAGTAATTTTATAAACCAGGGGTATTTTGGTAATTTTACTGAT
1 CAGGGGTATTTTAGTAATTTTACAAGCCAGGGGTATTTTGGTAATTTTACAAAT
* ** * ** *
47636671 C-GAGGGTATTTTGGTAATTTTGTAAACCAAAGGTATTTTAGTAATTTT
1 CAG-GGGTATTTTAGTAATTTTACAAGCCAGGGGTATTTTGGTAATTTT
47636719 GTAAATCGAG
Statistics
Matches: 136, Mismatches: 16, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
53 13 0.10
54 121 0.89
55 2 0.01
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (54 bp):
CAGGGGTATTTTAGTAATTTTACAAGCCAGGGGTATTTTGGTAATTTTACAAAT
Found at i:47636719 original size:27 final size:27
Alignment explanation
Indices: 47636563--47636723 Score: 189
Period size: 27 Copynumber: 6.0 Consensus size: 27
47636553 TTTCACAAAT
* *
47636563 CAGGGGTATTTTAGTAATTTTACAAGC
1 CAGGGGTATTTTAGTAATTTTATAAAC
* *
47636590 CAGGGGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTTAGTAATTTTATAAAC
47636617 CAGGGGTATTTTAGTAATTTTATAAAC
1 CAGGGGTATTTTAGTAATTTTATAAAC
* * *
47636644 CAGGGGTATTTTGGTAATTTTACTGATC
1 CAGGGGTATTTTAGTAATTTTA-TAAAC
* * *
47636672 GA-GGGTATTTTGGTAATTTTGTAAAC
1 CAGGGGTATTTTAGTAATTTTATAAAC
** *
47636698 CAAAGGTATTTTAGTAATTTTGTAAA
1 CAGGGGTATTTTAGTAATTTTATAAA
47636724 TCGAGGGTAA
Statistics
Matches: 118, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
26 4 0.03
27 110 0.93
28 4 0.03
ACGTcount: A:0.30, C:0.08, G:0.22, T:0.40
Consensus pattern (27 bp):
CAGGGGTATTTTAGTAATTTTATAAAC
Found at i:47636732 original size:27 final size:27
Alignment explanation
Indices: 47636566--47636752 Score: 134
Period size: 27 Copynumber: 6.9 Consensus size: 27
47636556 CACAAATCAG
* *
47636566 GGGTATTTTAGTAA-TTT-TACAAGCCA
1 GGGTATTTTGGTAATTTTGTA-AATCCA
**
47636592 GGGGTATTTTGGTAATTTTACAAA-CCA
1 -GGGTATTTTGGTAATTTTGTAAATCCA
* *
47636619 GGGGTATTTTAGTAATTTTATAAA-CCA
1 -GGGTATTTTGGTAATTTTGTAAATCCA
* * *
47636646 GGGGTATTTTGGTAATTTTACT-GATCGA
1 -GGGTATTTTGGTAATTTT-GTAAATCCA
47636674 GGGTATTTTGGTAATTTTGTAAA-CCAA
1 GGGTATTTTGGTAATTTTGTAAATCC-A
* * *
47636701 AGGTATTTTAGTAATTTTGTAAATCGA
1 GGGTATTTTGGTAATTTTGTAAATCCA
****
47636728 GGGTAAAACGGTAATTTTGTAAATC
1 GGGTATTTTGGTAATTTTGTAAATC
47636753 GAAGGTAAAA
Statistics
Matches: 133, Mismatches: 20, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
26 2 0.02
27 121 0.91
28 9 0.07
29 1 0.01
ACGTcount: A:0.30, C:0.08, G:0.22, T:0.40
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTGTAAATCCA
Found at i:47636732 original size:81 final size:81
Alignment explanation
Indices: 47636563--47636723 Score: 225
Period size: 81 Copynumber: 2.0 Consensus size: 81
47636553 TTTCACAAAT
**
47636563 CAGGGGTATTTTAGTAATTTTACAAGCCAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTT
1 CAGGGGTATTTTAGTAATTTTACAAGCCAGGGGTATTTTGGTAATTTTACAAACCAAAGGTATTT
47636628 TAGTAATTTTATAAAC
66 TAGTAATTTTATAAAC
* * * * **
47636644 CAGGGGTATTTTGGTAATTTTACTGATCGA-GGGTATTTTGGTAATTTTGTAAACCAAAGGTATT
1 CAGGGGTATTTTAGTAATTTTAC-AAGCCAGGGGTATTTTGGTAATTTTACAAACCAAAGGTATT
*
47636708 TTAGTAATTTTGTAAA
65 TTAGTAATTTTATAAA
47636724 TCGAGGGTAA
Statistics
Matches: 70, Mismatches: 9, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
81 67 0.96
82 3 0.04
ACGTcount: A:0.30, C:0.08, G:0.22, T:0.40
Consensus pattern (81 bp):
CAGGGGTATTTTAGTAATTTTACAAGCCAGGGGTATTTTGGTAATTTTACAAACCAAAGGTATTT
TAGTAATTTTATAAAC
Found at i:47636741 original size:54 final size:54
Alignment explanation
Indices: 47636683--47636941 Score: 266
Period size: 54 Copynumber: 4.8 Consensus size: 54
47636673 AGGGTATTTT
* * *** * * *
47636683 GGTAATTTTGTAAACCAAAGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAAC
1 GGTAATTCTGTAAATCAAAGGTAAAATGGTAATTCTATAAATCGAGGGTAAAAC
* * * * *
47636737 GGTAATTTTGTAAATCGAAGGTAAAACGATAATTCTATAAATTGAGGGTAAAAC
1 GGTAATTCTGTAAATCAAAGGTAAAATGGTAATTCTATAAATCGAGGGTAAAAC
* * * *
47636791 GATAATTCTATAAATCAACGGTAAAATGGTAATTCTATAAATCGAGGGTAAAAT
1 GGTAATTCTGTAAATCAAAGGTAAAATGGTAATTCTATAAATCGAGGGTAAAAC
* * * *
47636845 GGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAAC
1 GGTAATTCTGTAAATCAAAGGTAAAATGGTAATTCTATAAATCGAGGGTAAAAC
** * * * * *
47636899 AATAATTCTGTAAATCGAGGGTAAAACGATAATTCTGTAAATC
1 GGTAATTCTGTAAATCAAAGGTAAAATGGTAATTCTATAAATC
47636942 AATGGTACTT
Statistics
Matches: 175, Mismatches: 30, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 175 1.00
ACGTcount: A:0.41, C:0.09, G:0.20, T:0.30
Consensus pattern (54 bp):
GGTAATTCTGTAAATCAAAGGTAAAATGGTAATTCTATAAATCGAGGGTAAAAC
Found at i:47636741 original size:81 final size:81
Alignment explanation
Indices: 47636593--47636745 Score: 200
Period size: 81 Copynumber: 1.9 Consensus size: 81
47636583 TACAAGCCAG
** ****
47636593 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTATAAACCAGGGGTATTTTGG
1 GGGTATTTTGGTAATTTTACAAACCAAAGGTATTTTAGTAATTTTATAAACCAGGGGTAAAACGG
47636658 TAATTTTACTGATCGA
66 TAATTTTACTGATCGA
** * *
47636674 GGGTATTTTGGTAATTTTGTAAACCAAAGGTATTTTAGTAATTTTGTAAATC-GAGGGTAAAACG
1 GGGTATTTTGGTAATTTTACAAACCAAAGGTATTTTAGTAATTTTATAAACCAG-GGGTAAAACG
47636738 GTAATTTT
65 GTAATTTT
47636746 GTAAATCGAA
Statistics
Matches: 61, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
80 1 0.02
81 60 0.98
ACGTcount: A:0.30, C:0.07, G:0.22, T:0.41
Consensus pattern (81 bp):
GGGTATTTTGGTAATTTTACAAACCAAAGGTATTTTAGTAATTTTATAAACCAGGGGTAAAACGG
TAATTTTACTGATCGA
Found at i:47636753 original size:27 final size:27
Alignment explanation
Indices: 47636711--47636941 Score: 318
Period size: 27 Copynumber: 8.6 Consensus size: 27
47636701 AGGTATTTTA
*
47636711 GTAATTTTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
47636738 GTAATTTTGTAAATCGAAGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
47636765 ATAATTCTATAAATTGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * * * *
47636792 ATAATTCTATAAATCAACGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
47636819 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
47636846 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
47636873 GTAATTCTGTAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
47636900 ATAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
47636927 ATAATTCTGTAAATC
1 GTAATTCTGTAAATC
47636942 AATGGTACTT
Statistics
Matches: 186, Mismatches: 18, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 186 1.00
ACGTcount: A:0.41, C:0.10, G:0.20, T:0.29
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:47636967 original size:27 final size:27
Alignment explanation
Indices: 47636937--47637096 Score: 112
Period size: 27 Copynumber: 6.0 Consensus size: 27
47636927 ATAATTCTGT
*
47636937 AAATCAATGGTACTTT-GGTAATTTTAC
1 AAATCAAGGGTA-TTTCGGTAATTTTAC
** * *
47636964 AAATTTAGGGGATTTCAGTAATTTTAC
1 AAATCAAGGGTATTTCGGTAATTTTAC
* ** *
47636991 -AATCGACAGTATTTCGGTAATTTTAT
1 AAATCAAGGGTATTTCGGTAATTTTAC
* ** *
47637017 AAACCGGGGGTACTTT-GGTCATTTTAC
1 AAATCAAGGGTA-TTTCGGTAATTTTAC
* *
47637044 AAGTCGAA-GGTATTTCAGTAATTTTAC
1 AAATC-AAGGGTATTTCGGTAATTTTAC
* *
47637071 AAATCGAGGGTATTTCAGTAATTTTA
1 AAATCAAGGGTATTTCGGTAATTTTA
47637097 GTAAACTAAA
Statistics
Matches: 101, Mismatches: 26, Indels: 12
0.73 0.19 0.09
Matches are distributed among these distances:
26 26 0.26
27 72 0.71
28 3 0.03
ACGTcount: A:0.31, C:0.11, G:0.19, T:0.39
Consensus pattern (27 bp):
AAATCAAGGGTATTTCGGTAATTTTAC
Found at i:47637030 original size:80 final size:82
Alignment explanation
Indices: 47636945--47637102 Score: 221
Period size: 80 Copynumber: 2.0 Consensus size: 82
47636935 GTAAATCAAT
** * *
47636945 GGTACTTTGGTAATTTTACAAATTTAGGGGATTTCAGTAATTTTAC-AATCGACAGTATTTCGGT
1 GGTACTTTGGTAATTTTACAAATCGAAGGGATTTCAGTAATTTTACAAATCGACAGTATTTCAGT
47637009 AATTTTA-TAAACCGGG
66 AATTTTAGTAAACCGGG
* * * **
47637025 GGTACTTTGGTCATTTTACAAGTCGAAGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCAGT
1 GGTACTTTGGTAATTTTACAAATCGAAGGGATTTCAGTAATTTTACAAATCGACAGTATTTCAGT
47637090 AATTTTAGTAAAC
66 AATTTTAGTAAAC
47637103 TAAAGTATTC
Statistics
Matches: 67, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
80 40 0.60
81 22 0.33
82 5 0.07
ACGTcount: A:0.30, C:0.11, G:0.20, T:0.39
Consensus pattern (82 bp):
GGTACTTTGGTAATTTTACAAATCGAAGGGATTTCAGTAATTTTACAAATCGACAGTATTTCAGT
AATTTTAGTAAACCGGG
Done.