Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 143 of 362
Found at i:47637095 original size:54 final size:53
Alignment explanation
Indices: 47636954--47637096 Score: 164
Period size: 54 Copynumber: 2.7 Consensus size: 53
47636944 TGGTACTTTG
** * *
47636954 GTAATTTTACAAATTTAGGGGATTTCAGTAATTTTACAATCGACAGTATTTCG
1 GTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAATCGACAGTATTTCA
* * * * *
47637007 GTAATTTTATAAACCGGGGGTACTTT-GGTCATTTTACAAGTCGA-AGGTATTTCA
1 GTAATTTTACAAATCGAGGGTA-TTTCAGTAATTTTACAA-TCGACA-GTATTTCA
47637061 GTAATTTTACAAATCGAGGGTATTTCAGTAATTTTA
1 GTAATTTTACAAATCGAGGGTATTTCAGTAATTTTA
47637097 GTAAACTAAA
Statistics
Matches: 72, Mismatches: 14, Indels: 7
0.77 0.15 0.08
Matches are distributed among these distances:
53 31 0.43
54 41 0.57
ACGTcount: A:0.31, C:0.11, G:0.19, T:0.39
Consensus pattern (53 bp):
GTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAATCGACAGTATTTCA
Found at i:47639388 original size:25 final size:25
Alignment explanation
Indices: 47639356--47639475 Score: 168
Period size: 25 Copynumber: 4.8 Consensus size: 25
47639346 TTCTTTTAAT
* *
47639356 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGGTA
47639381 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
* *
47639406 AACTTGGGCAAAGCCTTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
** *
47639431 AACTAAGGCAAAGCCCTTGTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
*
47639456 AACTGGGGCAAAACCCTTTT
1 AACTGGGGCAAAGCCCTTTT
47639476 AGCACTTCCT
Statistics
Matches: 83, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 83 1.00
ACGTcount: A:0.28, C:0.23, G:0.24, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGGTA
Found at i:47639710 original size:27 final size:27
Alignment explanation
Indices: 47639680--47639894 Score: 227
Period size: 27 Copynumber: 8.0 Consensus size: 27
47639670 GGGGAAAAAT
* * *
47639680 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
47639707 GGTAATTCTATCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
47639734 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
47639761 GGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
** * * * * *
47639788 AATAATTCTACGCTATAGGGGCATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
*
47639815 GGTAATTCTACCCTAC-AGGGTTATTTT
1 GGTAATTCTACCCTACAAGGG-TATTTC
** *
47639842 GGTAATTCTACCCTACTGGGGT-TTCTT
1 GGTAATTCTACCCTACAAGGGTATT-TC
*
47639869 GGTAATTCTACCCTACAGGGGTATTT
1 GGTAATTCTACCCTACAAGGGTATTT
47639895 TGATATTTTA
Statistics
Matches: 162, Mismatches: 22, Indels: 8
0.84 0.11 0.04
Matches are distributed among these distances:
26 5 0.03
27 152 0.94
28 5 0.03
ACGTcount: A:0.23, C:0.20, G:0.20, T:0.37
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:47639895 original size:81 final size:81
Alignment explanation
Indices: 47639679--47639896 Score: 260
Period size: 81 Copynumber: 2.7 Consensus size: 81
47639669 AGGGGAAAAA
* * * * * * * * *
47639679 TGGTAATTTTACCCCACAAGGGTATCTCGGTAATTCTATCCTACAAGGGTATTTCGGTATTTCTA
1 TGGTAATTCTACCCTACAGGGGTTTCTTGGTAATTCTACCCTACAGGGGTATTTTGGTAATTCTA
47639744 CCCTACAAGGGTATTT
66 CCCTACAAGGGTATTT
* ** * * *
47639760 CGGTAATTCTACCCTACAGGGGTATT-TTAATAATTCTACGCTATAGGGGCATTTTGGTAATTCT
1 TGGTAATTCTACCCTACAGGGGT-TTCTTGGTAATTCTACCCTACAGGGGTATTTTGGTAATTCT
47639824 ACCCTAC-AGGGTTATTT
65 ACCCTACAAGGG-TATTT
*
47639841 TGGTAATTCTACCCTACTGGGGTTTCTTGGTAATTCTACCCTACAGGGGTATTTTG
1 TGGTAATTCTACCCTACAGGGGTTTCTTGGTAATTCTACCCTACAGGGGTATTTTG
47639897 ATATTTTACA
Statistics
Matches: 112, Mismatches: 22, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
80 6 0.05
81 105 0.94
82 1 0.01
ACGTcount: A:0.23, C:0.20, G:0.20, T:0.37
Consensus pattern (81 bp):
TGGTAATTCTACCCTACAGGGGTTTCTTGGTAATTCTACCCTACAGGGGTATTTTGGTAATTCTA
CCCTACAAGGGTATTT
Found at i:47639941 original size:26 final size:26
Alignment explanation
Indices: 47639891--47639941 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
47639881 CTACAGGGGT
* *
47639891 ATTTTGATATTTTACAAATCGAGAGC
1 ATTTCGATATTTCACAAATCGAGAGC
47639917 ATTTCGATAATTTCACAAATC-AGAG
1 ATTTCGAT-ATTTCACAAATCGAGAG
47639942 GTATTTTGGT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 11 0.50
27 11 0.50
ACGTcount: A:0.37, C:0.14, G:0.14, T:0.35
Consensus pattern (26 bp):
ATTTCGATATTTCACAAATCGAGAGC
Found at i:47640133 original size:27 final size:27
Alignment explanation
Indices: 47639887--47640397 Score: 275
Period size: 27 Copynumber: 18.9 Consensus size: 27
47639877 TACCCTACAG
* *
47639887 GGGTATTTTGAT-ATTTTACAAATCGA
1 GGGTATTTTGGTAATTTTATAAATCGA
* * * * * *
47639913 GAGCATTTCGATAATTTCACAAATC-A
1 GGGTATTTTGGTAATTTTATAAATCGA
* * *
47639939 GAGGTATTTTGGTAATTTTA-CAAGCTA
1 G-GGTATTTTGGTAATTTTATAAATCGA
* *
47639966 GGGGTATTTTGGTAATTTTACAAA-CCA
1 -GGGTATTTTGGTAATTTTATAAATCGA
* *
47639993 GGGGTATTTTGGTAATTTTACAAA-CCA
1 -GGGTATTTTGGTAATTTTATAAATCGA
* * *
47640020 GGGGTATTTTAGTAATTTTACAAA-CCA
1 -GGGTATTTTGGTAATTTTATAAATCGA
*
47640047 GGGGTATCTTGGTAATTTTACT-AATCGA
1 -GGGTATTTTGGTAATTTTA-TAAATCGA
* *
47640075 GGGTATTTTGGTAATTTTTTAAA-CTAA
1 GGGTATTTTGGTAATTTTATAAATC-GA
* *
47640102 GGGTATTTTAGTAATTTTGTAAATCGA
1 GGGTATTTTGGTAATTTTATAAATCGA
* **** * *
47640129 TGGTAAAACGGTAATTCTGTAAATCGA
1 GGGTATTTTGGTAATTTTATAAATCGA
* *** * *
47640156 TGGTAAAATGATAATTCTATAAATCGA
1 GGGTATTTTGGTAATTTTATAAATCGA
*** *
47640183 GGGTAAAATGGTAATTTTGTAAATCGA
1 GGGTATTTTGGTAATTTTATAAATCGA
*** *
47640210 GGGTAAAATGGTAATTTTGTAAATCGA
1 GGGTATTTTGGTAATTTTATAAATCGA
**** * *
47640237 GGGTAAAACGATAATTCTATAAATCGA
1 GGGTATTTTGGTAATTTTATAAATCGA
* * *
47640264 GGGTACTTTGGTAATTTTACAAATTGA
1 GGGTATTTTGGTAATTTTATAAATCGA
* ** *
47640291 GGGCATTTCAGTAATTTTA-CAATCGA
1 GGGTATTTTGGTAATTTTATAAATCGA
* * *
47640317 CGGTATTTCAGTGGTAATTTTACAAGTCGA
1 GGGTATTT---TGGTAATTTTATAAATCGA
* **
47640347 AGGTATTTCAGTAATTTTATAAATCGA
1 GGGTATTTTGGTAATTTTATAAATCGA
**
47640374 GGGTATTTCAGTAATTTTAGTAAA
1 GGGTATTTTGGTAATTTTA-TAAA
47640398 CTAAAGTATT
Statistics
Matches: 402, Mismatches: 68, Indels: 28
0.81 0.14 0.06
Matches are distributed among these distances:
26 27 0.07
27 344 0.86
28 10 0.02
29 9 0.02
30 12 0.03
ACGTcount: A:0.33, C:0.09, G:0.21, T:0.37
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTATAAATCGA
Found at i:47640337 original size:56 final size:57
Alignment explanation
Indices: 47640248--47640385 Score: 167
Period size: 56 Copynumber: 2.5 Consensus size: 57
47640238 GGTAAAACGA
* * * * *
47640248 TAATTCTATAAATCGAGGGTACTT---TGGTAATTTTACAAATTGAGGGCATTTCAG
1 TAATTTTATAAATCGACGGTATTTCAGTGGTAATTTTACAAATCGAAGGCATTTCAG
* * *
47640302 TAATTTTA-CAATCGACGGTATTTCAGTGGTAATTTTACAAGTCGAAGGTATTTCAG
1 TAATTTTATAAATCGACGGTATTTCAGTGGTAATTTTACAAATCGAAGGCATTTCAG
*
47640358 TAATTTTATAAATCGAGGGTATTTCAGT
1 TAATTTTATAAATCGACGGTATTTCAGT
47640386 AATTTTAGTA
Statistics
Matches: 70, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
53 12 0.17
54 7 0.10
56 34 0.49
57 17 0.24
ACGTcount: A:0.31, C:0.11, G:0.20, T:0.38
Consensus pattern (57 bp):
TAATTTTATAAATCGACGGTATTTCAGTGGTAATTTTACAAATCGAAGGCATTTCAG
Found at i:47642752 original size:24 final size:24
Alignment explanation
Indices: 47642665--47642758 Score: 152
Period size: 25 Copynumber: 3.8 Consensus size: 24
47642655 CTCTTTTAAT
47642665 AACTGCGGCAAAGCCCTTTTCGGTA
1 AACTG-GGCAAAGCCCTTTTCGGTA
*
47642690 AACAGGGGCAAAGCCCTTTTCGGTA
1 AAC-TGGGCAAAGCCCTTTTCGGTA
47642715 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACT-GGGCAAAGCCCTTTTCGGTA
47642740 AACTGGGCAAAGCCCTTTT
1 AACTGGGCAAAGCCCTTTT
47642759 AGCACTTCCT
Statistics
Matches: 65, Mismatches: 2, Indels: 5
0.90 0.03 0.07
Matches are distributed among these distances:
24 15 0.23
25 49 0.75
26 1 0.02
ACGTcount: A:0.26, C:0.26, G:0.26, T:0.23
Consensus pattern (24 bp):
AACTGGGCAAAGCCCTTTTCGGTA
Found at i:47643208 original size:27 final size:27
Alignment explanation
Indices: 47642965--47643208 Score: 301
Period size: 27 Copynumber: 9.1 Consensus size: 27
47642955 GGAAAAATAG
* * * * *
47642965 TAATTTTACCCCACAAGGGTATCTCGG
1 TAATTCTACCCTACAGGGGTATTTCGA
*
47642992 TAATTCTACCCTACAGTGGTATTTCGA
1 TAATTCTACCCTACAGGGGTATTTCGA
* *
47643019 TATTTCTACCCTACAAGGGTATTTCGA
1 TAATTCTACCCTACAGGGGTATTTCGA
**
47643046 TAATTCTACCCTACAGGGGTATTTTAA
1 TAATTCTACCCTACAGGGGTATTTCGA
* * * * *
47643073 TAATTCTACGCTACAAGGGCATTTTGG
1 TAATTCTACCCTACAGGGGTATTTCGA
* *
47643100 TAATTCTACCCTATAGGGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCGA
*
47643127 TAATTCTACCCTACAGGGTTATTTCG-
1 TAATTCTACCCTACAGGGGTATTTCGA
*
47643153 TATTTCTACCCTACAGGGGTATTTCGA
1 TAATTCTACCCTACAGGGGTATTTCGA
*
47643180 TAATTCTACCCTACAGGGGTATTTTGA
1 TAATTCTACCCTACAGGGGTATTTCGA
47643207 TA
1 TA
47643209 TTTTACAAAT
Statistics
Matches: 187, Mismatches: 29, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
26 24 0.13
27 163 0.87
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.36
Consensus pattern (27 bp):
TAATTCTACCCTACAGGGGTATTTCGA
Found at i:47643401 original size:81 final size:81
Alignment explanation
Indices: 47643196--47643401 Score: 249
Period size: 81 Copynumber: 2.6 Consensus size: 81
47643186 TACCCTACAG
* * * * * *
47643196 GGGTATTTTGAT-ATTTTACAAATCGAGTGTA-TTTAGATAATTTCACAAATCAGTGGTATTTTG
1 GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAG-TAATTTTACAAATCAGGGGTATTTTG
47643259 GTAATTTTACAAGCCAT
65 GTAATTTTACAAGCCAT
47643276 GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTACAAA-CTAGGGGTATTTTG
1 GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTACAAATC-AGGGGTATTTTG
* * *
47643340 GTAATTTTACTGATCGA-
65 GTAATTTTAC-AAGCCAT
* * *
47643357 GGGTATTTTTGTAATTTTGCAAACCTAGGGTATTTTAGTAATTTT
1 GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTT
47643402 GTAAATCGAG
Statistics
Matches: 110, Mismatches: 12, Indels: 7
0.85 0.09 0.05
Matches are distributed among these distances:
80 12 0.11
81 90 0.82
82 8 0.07
ACGTcount: A:0.29, C:0.09, G:0.19, T:0.43
Consensus pattern (81 bp):
GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTACAAATCAGGGGTATTTTGG
TAATTTTACAAGCCAT
Found at i:47643402 original size:27 final size:27
Alignment explanation
Indices: 47643196--47643401 Score: 195
Period size: 27 Copynumber: 7.7 Consensus size: 27
47643186 TACCCTACAG
* * *
47643196 GGGTATTTTGAT-ATTTTACAAATCGA
1 GGGTATTTTGGTAATTTTACAAACCTA
* * * * *
47643222 GTGTATTTAGATAATTTCACAAATC-A
1 GGGTATTTTGGTAATTTTACAAACCTA
*
47643248 GTGGTATTTTGGTAATTTTACAAGCC-A
1 G-GGTATTTTGGTAATTTTACAAACCTA
*
47643275 TGGGTATTTTGGTAATTTTACAAACCAA
1 -GGGTATTTTGGTAATTTTACAAACCTA
*
47643303 GGGTATTTTAGTAATTTTACAAA-CTA
1 GGGTATTTTGGTAATTTTACAAACCTA
** * *
47643329 GGGGTATTTTGGTAATTTTACTGATCGA
1 -GGGTATTTTGGTAATTTTACAAACCTA
* *
47643357 GGGTATTTTTGTAATTTTGCAAACCTA
1 GGGTATTTTGGTAATTTTACAAACCTA
*
47643384 GGGTATTTTAGTAATTTT
1 GGGTATTTTGGTAATTTT
47643402 GTAAATCGAG
Statistics
Matches: 151, Mismatches: 23, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
26 14 0.09
27 133 0.88
28 4 0.03
ACGTcount: A:0.29, C:0.09, G:0.19, T:0.43
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCTA
Found at i:47643413 original size:27 final size:27
Alignment explanation
Indices: 47643196--47643706 Score: 175
Period size: 27 Copynumber: 18.9 Consensus size: 27
47643186 TACCCTACAG
*
47643196 GGGTATTTT-G-ATATTTTACAAATCGA
1 GGGTATTTTAGTA-ATTTTATAAATCGA
* * *
47643222 GTGTA-TTTAGATAATTTCACAAATC-A
1 GGGTATTTTAG-TAATTTTATAAATCGA
* * * *
47643248 GTGGTATTTTGGTAATTTTA-CAAGCCA
1 G-GGTATTTTAGTAATTTTATAAATCGA
* * * *
47643275 TGGGTATTTTGGTAATTTTACAAACCAA
1 -GGGTATTTTAGTAATTTTATAAATCGA
* *
47643303 GGGTATTTTAGTAATTTTACAAA-CTA
1 GGGTATTTTAGTAATTTTATAAATCGA
* *
47643329 GGGGTATTTTGGTAATTTTACT-GATCGA
1 -GGGTATTTTAGTAATTTTA-TAAATCGA
* ** * *
47643357 GGGTATTTTTGTAATTTTGCAAACCTA
1 GGGTATTTTAGTAATTTTATAAATCGA
*
47643384 GGGTATTTTAGTAATTTTGTAAATCGA
1 GGGTATTTTAGTAATTTTATAAATCGA
**** *
47643411 GGGTAAAACAGTAATTTTGTAAATCGA
1 GGGTATTTTAGTAATTTTATAAATCGA
** *
47643438 GGG--TTAAACGATAATTCTATAAATCGA
1 GGGTATTTTA-G-TAATTTTATAAATCGA
*** * * * *
47643465 GGGTAAAATGGTAATTCTGTAAATTGA
1 GGGTATTTTAGTAATTTTATAAATCGA
*** * * * * *
47643492 GGGTAAAATGGTAATTCTGTAAATTGT
1 GGGTATTTTAGTAATTTTATAAATCGA
***** *
47643519 GGGTAAAACGGTAATTCTATAAATCGA
1 GGGTATTTTAGTAATTTTATAAATCGA
** * *
47643546 GGGTA--AAACGATAATTCTGTAAATCGA
1 GGGTATTTTA-G-TAATTTTATAAATCGA
* * * *
47643573 GGGTACTTTGGTAATTTTACAAATTGA
1 GGGTATTTTAGTAATTTTATAAATCGA
* *
47643600 GGGCATTTCT-GTAATTTTA-CAATCGA
1 GGGTATTT-TAGTAATTTTATAAATCGA
** * * *
47643626 CAGTATTTCGGTCGTAATTTTACAAGTCGA
1 GGGTATTT---TAGTAATTTTATAAATCGA
* *
47643656 AGGTATTTCAGTAATTTTATAAATCGA
1 GGGTATTTTAGTAATTTTATAAATCGA
*
47643683 GGGTATTTCAGTAATTTTAGTAAA
1 GGGTATTTTAGTAATTTTA-TAAA
47643707 CTAAAGTATT
Statistics
Matches: 386, Mismatches: 73, Indels: 50
0.76 0.14 0.10
Matches are distributed among these distances:
25 6 0.02
26 24 0.06
27 315 0.82
28 20 0.05
29 10 0.03
30 11 0.03
ACGTcount: A:0.33, C:0.09, G:0.21, T:0.38
Consensus pattern (27 bp):
GGGTATTTTAGTAATTTTATAAATCGA
Found at i:47643588 original size:81 final size:81
Alignment explanation
Indices: 47643395--47643577 Score: 267
Period size: 81 Copynumber: 2.3 Consensus size: 81
47643385 GGTATTTTAG
* ** * *
47643395 TAATTTTGTAAATCGAGGGTAAAACAGTAATTTTGTAAATCGAGGGTTAAACGATAATTCTATAA
1 TAATTCTGTAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTATAA
* *
47643460 ATCGAGGGTAAAATGG
66 ATCGAGGGTAAAACGA
* * * *
47643476 TAATTCTGTAAATTGAGGGTAAAATGGTAATTCTGTAAATTGTGGGTAAAACGGTAATTCTATAA
1 TAATTCTGTAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTATAA
47643541 ATCGAGGGTAAAACGA
66 ATCGAGGGTAAAACGA
47643557 TAATTCTGTAAATCGAGGGTA
1 TAATTCTGTAAATCGAGGGTA
47643578 CTTTGGTAAT
Statistics
Matches: 90, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
81 90 1.00
ACGTcount: A:0.38, C:0.08, G:0.23, T:0.31
Consensus pattern (81 bp):
TAATTCTGTAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTATAA
ATCGAGGGTAAAACGA
Found at i:47643597 original size:81 final size:81
Alignment explanation
Indices: 47643395--47643598 Score: 237
Period size: 81 Copynumber: 2.5 Consensus size: 81
47643385 GGTATTTTAG
* ** * ** * * *
47643395 TAATTTTGTAAATCGAGGGTAAAACAGTAATTTTGTAAATCGAGGGTTAAACGATAATTCTATAA
1 TAATTCTGTAAATCGAGGGTAAAATGGTAATTCTACAAATTGTGGGTAAAACGATAATTCTATAA
* *
47643460 ATCGAGGGTAAAATGG
66 ATCGAGGGTAAAACGA
* ** *
47643476 TAATTCTGTAAATTGAGGGTAAAATGGTAATTCTGTAAATTGTGGGTAAAACGGTAATTCTATAA
1 TAATTCTGTAAATCGAGGGTAAAATGGTAATTCTACAAATTGTGGGTAAAACGATAATTCTATAA
47643541 ATCGAGGGTAAAACGA
66 ATCGAGGGTAAAACGA
*** *
47643557 TAATTCTGTAAATCGAGGGTACTTTGGTAATTTTACAAATTG
1 TAATTCTGTAAATCGAGGGTAAAATGGTAATTCTACAAATTG
47643599 AGGGCATTTC
Statistics
Matches: 105, Mismatches: 18, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
81 105 1.00
ACGTcount: A:0.37, C:0.08, G:0.22, T:0.33
Consensus pattern (81 bp):
TAATTCTGTAAATCGAGGGTAAAATGGTAATTCTACAAATTGTGGGTAAAACGATAATTCTATAA
ATCGAGGGTAAAACGA
Found at i:47643602 original size:54 final size:54
Alignment explanation
Indices: 47643395--47643577 Score: 240
Period size: 54 Copynumber: 3.4 Consensus size: 54
47643385 GGTATTTTAG
* ** * * *
47643395 TAATTTTGTAAATCGAGGGTAAAACAGTAATTTTGTAAATCGAGGGTTAAACGA
1 TAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGA
* * * * *
47643449 TAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTAAATTGAGGGTAAAATGG
1 TAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGA
* * *
47643503 TAATTCTGTAAATTGTGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGA
1 TAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGA
47643557 TAATTCTGTAAATCGAGGGTA
1 TAATTCTGTAAATCGAGGGTA
47643578 CTTTGGTAAT
Statistics
Matches: 110, Mismatches: 19, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 110 1.00
ACGTcount: A:0.38, C:0.08, G:0.23, T:0.31
Consensus pattern (54 bp):
TAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGA
Found at i:47650269 original size:36 final size:36
Alignment explanation
Indices: 47650222--47650298 Score: 118
Period size: 36 Copynumber: 2.1 Consensus size: 36
47650212 TTATTACGAA
* * *
47650222 GTCTTACCCGGACATAATCTCCACACGAAGTTATCG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCG
*
47650258 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCG
47650294 GTCTT
1 GTCTT
47650299 TAGAGCTCGA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.26, C:0.32, G:0.17, T:0.25
Consensus pattern (36 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCG
Found at i:47650500 original size:47 final size:47
Alignment explanation
Indices: 47650413--47650705 Score: 430
Period size: 47 Copynumber: 6.3 Consensus size: 47
47650403 CCCTTCGAGA
* * * * * * * *
47650413 CTTATCACATTTATGCACTTTCACATCCATTACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
47650460 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
47650507 CTTATCAC--ATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
47650552 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
47650599 CTTATCACACATATACACTTTCACATTCATCACATCGG-CATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
47650645 CTTATCACATATACATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATAT--ATACACTTTCACATTCATCACATCGGCCATTAGGC
47650694 CTTATCACATAT
1 CTTATCACATAT
47650706 GACTGAATAT
Statistics
Matches: 223, Mismatches: 18, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
45 44 0.20
46 18 0.08
47 115 0.52
48 26 0.12
49 20 0.09
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:47652166 original size:23 final size:22
Alignment explanation
Indices: 47652115--47652177 Score: 58
Period size: 23 Copynumber: 2.7 Consensus size: 22
47652105 CCTCGTCTTT
*
47652115 TTCTTTTGTTTCTTTTTCTAAC
1 TTCTTTTCTTTCTTTTTCTAAC
47652137 -TCATTTTCTCTTCTTTCTTC-AAC
1 TTC-TTTTCT-TTCTTT-TTCTAAC
47652160 TTCTTTTCAATTTCTTTT
1 TTCTTTTC--TTTCTTTT
47652178 CTGTTTCACA
Statistics
Matches: 34, Mismatches: 1, Indels: 11
0.74 0.02 0.24
Matches are distributed among these distances:
21 2 0.06
22 5 0.15
23 15 0.44
24 11 0.32
25 1 0.03
ACGTcount: A:0.11, C:0.22, G:0.02, T:0.65
Consensus pattern (22 bp):
TTCTTTTCTTTCTTTTTCTAAC
Found at i:47655637 original size:20 final size:20
Alignment explanation
Indices: 47655614--47655660 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
47655604 GGGTTAAGAT
*
47655614 TGAGCTGAATTGAGCTTGAG
1 TGAGCTGAATTGAGCTCGAG
* *
47655634 TGAGTTGACTTGAGCTCGAG
1 TGAGCTGAATTGAGCTCGAG
47655654 TGAGCTG
1 TGAGCTG
47655661 GAAACGAGCT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.21, C:0.13, G:0.36, T:0.30
Consensus pattern (20 bp):
TGAGCTGAATTGAGCTCGAG
Found at i:47656831 original size:20 final size:20
Alignment explanation
Indices: 47656808--47656854 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
47656798 GGGTTAAGAT
* *
47656808 TGAGCTGAATTGAGCTTGAG
1 TGAGCTGAATTAAGCTCGAG
* *
47656828 TGAGTTGACTTAAGCTCGAG
1 TGAGCTGAATTAAGCTCGAG
47656848 TGAGCTG
1 TGAGCTG
47656855 GAAACGAGCT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.23, C:0.13, G:0.34, T:0.30
Consensus pattern (20 bp):
TGAGCTGAATTAAGCTCGAG
Found at i:47660876 original size:37 final size:37
Alignment explanation
Indices: 47660826--47660904 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
47660816 TTATTACGAA
* * *
47660826 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
47660863 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
47660900 GTCTT
1 GTCTT
47660905 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:47661110 original size:47 final size:47
Alignment explanation
Indices: 47661023--47661567 Score: 901
Period size: 47 Copynumber: 11.5 Consensus size: 47
47661013 CCCTTCGAGA
* * * * * * * *
47661023 CTTATCACATTTATGCACTTTCACATCCATTACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
47661070 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
47661117 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
47661164 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
47661211 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
47661258 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
47661305 CTTATCACATATACATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATAT--ATACACTTTCACATTCATCACATCGGCCATTAGGC
47661354 CTTATCACATATACATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATAT--ATACACTTTCACATTCATCACATCGGCCATTAGGC
47661403 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
47661450 CTTATCACATATACATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATAT--ATACACTTTCACATTCATCACATCGGCCATTAGGC
47661499 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
47661546 CTTATCACATATATACACTTTC
1 CTTATCACATATATACACTTTC
47661568 TTGGCTGAAT
Statistics
Matches: 476, Mismatches: 18, Indels: 8
0.95 0.04 0.02
Matches are distributed among these distances:
47 333 0.70
49 143 0.30
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:47667557 original size:21 final size:21
Alignment explanation
Indices: 47667531--47667593 Score: 90
Period size: 21 Copynumber: 3.0 Consensus size: 21
47667521 TTGGTATTTG
47667531 GGAATTGGTACGAAATGGTAT
1 GGAATTGGTACGAAATGGTAT
*
47667552 GGAATTGGTATGAAATGGTAT
1 GGAATTGGTACGAAATGGTAT
* *
47667573 GGTATTTGGTACGAATTGGTA
1 GG-AATTGGTACGAAATGGTA
47667594 ATGGTTCAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
21 22 0.59
22 15 0.41
ACGTcount: A:0.30, C:0.03, G:0.33, T:0.33
Consensus pattern (21 bp):
GGAATTGGTACGAAATGGTAT
Found at i:47669995 original size:21 final size:22
Alignment explanation
Indices: 47669949--47669995 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 22
47669939 CATTTTTCTT
*
47669949 TTCTTTTTCACTCTCTCTCAAT
1 TTCTTTTTCACTCTCTCTCAAA
* *
47669971 TTCTTTTTCAGT-TCTTTCAAA
1 TTCTTTTTCACTCTCTCTCAAA
47669992 TTCT
1 TTCT
47669996 CCAAAGATTG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 11 0.50
22 11 0.50
ACGTcount: A:0.15, C:0.26, G:0.02, T:0.57
Consensus pattern (22 bp):
TTCTTTTTCACTCTCTCTCAAA
Found at i:47672983 original size:40 final size:39
Alignment explanation
Indices: 47672931--47673114 Score: 165
Period size: 40 Copynumber: 4.6 Consensus size: 39
47672921 TAACTCATTC
*
47672931 AATGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-TTTAAAACTCGCACA
*** *
47672971 AATGCCTTCGGGACTTAACCCGGAATTGGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGG-ATTTAAAACTCGCACA
* *
47673011 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAA-AACTCGCACA
* ** * ** *
47673051 AATACCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGATTTA-AAAC-TCGCACA
*
47673092 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
47673115 CAGCATTCAA
Statistics
Matches: 116, Mismatches: 22, Indels: 12
0.77 0.15 0.08
Matches are distributed among these distances:
39 5 0.04
40 99 0.85
41 12 0.10
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAAAACTCGCACA
Found at i:47672993 original size:79 final size:80
Alignment explanation
Indices: 47672894--47673114 Score: 193
Period size: 80 Copynumber: 2.8 Consensus size: 80
47672884 CTCGTTCAAG
* * ** * *
47672894 TGCCTTCGGGACATAGCCCGGTCA-TAGTAACTCATTC-AATGCCTTCGGGACTTAACCCGGATT
1 TGCCTTCGGGACATAACCCGG-AATTAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGA-A
*
47672957 TTAA-AACTCGCACGAA
64 TTAATAACTCGCACAAA
* * * *
47672973 TGCCTTCGGGACTTAACCCGGAATTGGTATCTCGCACAAAGGCCTTCGGGACTTAACCCGGAATT
1 TGCCTTCGGGACATAACCCGGAATTAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGAATT
47673038 AATAACTCGCACAAA
66 AATAACTCGCACAAA
* * ** * * *
47673053 TACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 TGCCTTCGGGA-CATAACCCGGAAT-TAGTAACTCA-CACAAAGGCCTTCGGGACTTAACCCGGA
47673115 CAGCATTCAA
Statistics
Matches: 116, Mismatches: 20, Indels: 11
0.79 0.14 0.07
Matches are distributed among these distances:
78 1 0.01
79 36 0.31
80 73 0.63
81 6 0.05
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
TGCCTTCGGGACATAACCCGGAATTAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGAATT
AATAACTCGCACAAA
Found at i:47673074 original size:80 final size:80
Alignment explanation
Indices: 47672934--47673114 Score: 210
Period size: 80 Copynumber: 2.3 Consensus size: 80
47672924 CTCATTCAAT
* * *
47672934 GCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGACTTAACCCGGA-ATT
1 GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGGACTTAACCCGGATA-T
* *
47672998 GGT-A-TCTCGCACAAA
65 AGTCACT-TAGCACAAA
**
47673013 GGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATACCTTC-GGATCTTAGTCCGGAT
1 -GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATACCTTCGGGA-CTTAACCCGGAT
47673076 ATAGTCACTTAGCACAAA
63 ATAGTCACTTAGCACAAA
*
47673094 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
47673115 CAGCATTCAA
Statistics
Matches: 88, Mismatches: 8, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
79 7 0.08
80 70 0.80
81 10 0.11
82 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGGACTTAACCCGGATATA
GTCACTTAGCACAAA
Found at i:47680807 original size:39 final size:39
Alignment explanation
Indices: 47680759--47680842 Score: 100
Period size: 38 Copynumber: 2.2 Consensus size: 39
47680749 CGGAATTTAA
* * *
47680759 CCGGATATAGCT-CCTCGTTCAAGTGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCATTCAA-TGCCTTCGGGACATAAC
*
47680799 CCGG-TATAGTAACTCATTCAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCATTCAATGCCTTCGGGACATAAC
47680837 CCGGAT
1 CCGGAT
47680843 TTTAAAACTC
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
38 20 0.53
39 14 0.37
40 4 0.11
ACGTcount: A:0.23, C:0.29, G:0.23, T:0.26
Consensus pattern (39 bp):
CCGGATATAGTAACTCATTCAATGCCTTCGGGACATAAC
Found at i:47680920 original size:79 final size:80
Alignment explanation
Indices: 47680821--47681000 Score: 217
Period size: 79 Copynumber: 2.3 Consensus size: 80
47680811 CTCATTCAAT
* * *
47680821 GCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACGAATGCCTTCGGGA-CTTAACCCGGA-A
1 GCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATACCTTC-GGATCTTAACCCGGATA
* *
47680883 TTGT-A-TCTCGCACAAA
64 TAGTCACT-TAGCACAAA
**
47680899 GGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACAAATACCTTCGGATCTTAGTCCGGATAT
1 -GCCTTCGGGACTTAACCCGGAATTAATAACTCGCACAAATACCTTCGGATCTTAACCCGGATAT
47680964 AGTCACTTAGCACAAA
65 AGTCACTTAGCACAAA
*
47680980 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
47681001 CAGCATTCAA
Statistics
Matches: 88, Mismatches: 8, Indels: 9
0.84 0.08 0.09
Matches are distributed among these distances:
78 7 0.08
79 47 0.53
80 24 0.27
81 9 0.10
82 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGAATTAATAACTCGCACAAATACCTTCGGATCTTAACCCGGATATA
GTCACTTAGCACAAA
Found at i:47680960 original size:40 final size:40
Alignment explanation
Indices: 47680818--47681000 Score: 187
Period size: 40 Copynumber: 4.6 Consensus size: 40
47680808 TAACTCATTC
* *
47680818 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
47680858 AATGCCTTCGGGACTTAACCCGGAATT-GTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
47680897 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
* ** * * *
47680937 AATACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
47680978 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
47681001 CAGCATTCAA
Statistics
Matches: 120, Mismatches: 16, Indels: 13
0.81 0.11 0.09
Matches are distributed among these distances:
39 41 0.34
40 68 0.57
41 11 0.09
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:47683811 original size:36 final size:36
Alignment explanation
Indices: 47683736--47683812 Score: 93
Period size: 36 Copynumber: 2.1 Consensus size: 36
47683726 TTATTACGAA
* * *
47683736 GTCTTACCCGGACATAATCTCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCACACGAAGTCATCGG
* *
47683772 GTCTTACCCGGACAAAATCCCCCAACGTAGTCATC-G
1 GTCTTACCCGGACAAAATCCCAC-ACGAAGTCATCGG
47683808 GTCTT
1 GTCTT
47683813 TAGAGCTCGG
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
36 26 0.74
37 9 0.26
ACGTcount: A:0.26, C:0.31, G:0.18, T:0.25
Consensus pattern (36 bp):
GTCTTACCCGGACAAAATCCCACACGAAGTCATCGG
Found at i:47684018 original size:47 final size:47
Alignment explanation
Indices: 47683931--47684281 Score: 569
Period size: 47 Copynumber: 7.5 Consensus size: 47
47683921 CCCTTCGGGA
* * * * * * * *
47683931 CTTATCACATTTATGCACTTTCACATCCATTACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
47683978 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
47684025 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
47684072 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
47684119 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATATAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCAT-TAGGC
47684167 CTTATCACATATATACACTTTCACATTCATCACATCGGCC-TTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
47684213 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
47684260 CTTATCACATATATACACTTTC
1 CTTATCACATATATACACTTTC
47684282 TTGGCTGAAT
Statistics
Matches: 284, Mismatches: 18, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
46 45 0.16
47 195 0.69
48 44 0.15
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:47684207 original size:39 final size:41
Alignment explanation
Indices: 47684164--47684281 Score: 137
Period size: 46 Copynumber: 2.6 Consensus size: 41
47684154 CGGCCATATA
47684164 GGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCTT
1 GGCCTTATCACATATATACACTTTCACATTCATCACAT---CC-T
47684209 AGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATT
1 -GGCCTTATCACATATATACACTTTCACATTCATCACAT---CC--T
47684256 AGGCCTTATCACATATATACACTTTC
1 -GGCCTTATCACATATATACACTTTC
47684282 TTGGCTGAAT
Statistics
Matches: 71, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
46 43 0.61
47 28 0.39
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (41 bp):
GGCCTTATCACATATATACACTTTCACATTCATCACATCCT
Found at i:47687624 original size:40 final size:39
Alignment explanation
Indices: 47687567--47687830 Score: 283
Period size: 40 Copynumber: 6.8 Consensus size: 39
47687557 CGAATACACG
* * *
47687567 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGACATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGA-ATA
* * * * *
47687607 ACACCAGCACGAATGCTCTTCGGG-TTTAGCACGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGA-ATA
*
47687646 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGG-ATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAATA
* *
47687684 CTCACTAGCATGAATGCTCTT--GGACTT-GCCCGGTACA
1 -TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAATA
* * *
47687721 TCACTAGCATGAATGCTCTTCGGGAATTAGCCCAGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGA-ATA
47687761 TCACTAGCATGAATGCTCTTCGGGACTTAG-CCGG-ATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAATA
* *
47687798 -CATCAAGCCTGAATGCTCTTCGGGACTTAGCCC
1 TCA-CTAGCATGAATGCTCTTCGGGACTTAGCCC
47687831 TTTGTAACTC
Statistics
Matches: 194, Mismatches: 21, Indels: 20
0.83 0.09 0.09
Matches are distributed among these distances:
36 28 0.14
37 35 0.18
38 10 0.05
39 60 0.31
40 61 0.31
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (39 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAATA
Found at i:47687661 original size:39 final size:40
Alignment explanation
Indices: 47687580--47687830 Score: 306
Period size: 39 Copynumber: 6.5 Consensus size: 40
47687570 CCAGCATGAT
* * * * *
47687580 TGCTCTTCGGGACCTAGCCCGGACATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * *
47687620 TGCTCTTCGGG-TTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
47687659 TGCTCTTCGGGACTTAGCCCGGATAC-TCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
47687698 TGCTCTT--GGACTT-GCCCGG-TACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * *
47687734 TGCTCTTCGGGAATTAGCCCAGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
47687774 TGCTCTTCGGGACTTAG-CCGGATACATCA--AGC-CTGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCAC-GAA
47687811 TGCTCTTCGGGACTTAGCCC
1 TGCTCTTCGGGACTTAGCCC
47687831 TTTGTAACTC
Statistics
Matches: 188, Mismatches: 15, Indels: 18
0.85 0.07 0.08
Matches are distributed among these distances:
35 3 0.02
36 26 0.14
37 29 0.15
38 7 0.04
39 68 0.36
40 55 0.29
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:47687824 original size:115 final size:115
Alignment explanation
Indices: 47687571--47687830 Score: 332
Period size: 115 Copynumber: 2.2 Consensus size: 115
47687561 TACACGTCAC
* * *
47687571 CAGCATGATTGCTCTTCGGGACCTAGCCCGGACATAACACCAGCACGAATGCTCTTCGGGTTTAG
1 CAGCATGAATGCTCTTCGGGA-CTTGCCCGGACAT-ACACCAGCACGAATGCTCTTCGGGATTAG
* *
47687636 CACGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACTCA
64 CACAGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACTCA
* *
47687688 CTAGCATGAATGCTCTT--GGACTTGCCCGGTACAT-CACTAGCATGAATGCTCTTCGGGAATTA
1 C-AGCATGAATGCTCTTCGGGACTTGCCCGG-ACATACACCAGCACGAATGCTCTTCGGG-ATTA
* *
47687750 GCCCAGATACATCACTAGCATGAATGCTCTTCGGGACTTAG-CCGGATACATCA
63 GCACAGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAC-TCA
*
47687803 -AGCCTGAATGCTCTTCGGGACTTAGCCC
1 CAGCATGAATGCTCTTCGGGACTT-GCCC
47687831 TTTGTAACTC
Statistics
Matches: 126, Mismatches: 10, Indels: 15
0.83 0.07 0.10
Matches are distributed among these distances:
113 14 0.11
114 29 0.23
115 57 0.45
116 11 0.09
117 1 0.01
118 14 0.11
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (115 bp):
CAGCATGAATGCTCTTCGGGACTTGCCCGGACATACACCAGCACGAATGCTCTTCGGGATTAGCA
CAGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACTCA
Found at i:47688244 original size:29 final size:29
Alignment explanation
Indices: 47688205--47688283 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
47688195 CTTAATAATC
*
47688205 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
47688235 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
47688264 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
47688284 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:47688325 original size:41 final size:40
Alignment explanation
Indices: 47688267--47688362 Score: 167
Period size: 41 Copynumber: 2.4 Consensus size: 40
47688257 CATTTCAAGC
47688267 CCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTG
1 CCGCACACTTAGTGCCAATCTCACAACCGTG-A-ACTTATTG
47688309 -CGCACACTTAGTGCCAATCTCACAACCGTGAACTTATTG
1 CCGCACACTTAGTGCCAATCTCACAACCGTGAACTTATTG
47688348 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
47688363 TGAAAACCAA
Statistics
Matches: 53, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
39 8 0.15
40 15 0.28
41 30 0.57
ACGTcount: A:0.27, C:0.33, G:0.16, T:0.24
Consensus pattern (40 bp):
CCGCACACTTAGTGCCAATCTCACAACCGTGAACTTATTG
Found at i:47690267 original size:36 final size:37
Alignment explanation
Indices: 47690207--47690284 Score: 113
Period size: 36 Copynumber: 2.1 Consensus size: 37
47690197 TTATTACGAA
* * *
47690207 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
47690244 GTCTTA-CCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
47690280 GTCTT
1 GTCTT
47690285 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
36 31 0.84
37 6 0.16
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:47690488 original size:47 final size:47
Alignment explanation
Indices: 47690401--47691037 Score: 1055
Period size: 47 Copynumber: 13.5 Consensus size: 47
47690391 GCCCTTCGGA
* * * * * * * *
47690401 CTTATCACATTTATGCACTTTCACATCCATTACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
47690448 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
47690495 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
47690542 CTT-T-ACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
47690587 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
47690634 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
47690681 CTTATCACATATACATACACTTTCACATTCATCACATCAGCCATTAAGC
1 CTTATCACATAT--ATACACTTTCACATTCATCACATCGGCCATTAGGC
47690730 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
47690777 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
47690824 CTTATCACATATAATACACTTTCACATTCATCACATCGG-CTTTAGGC
1 CTTATCACATAT-ATACACTTTCACATTCATCACATCGGCCATTAGGC
47690871 CTTATCACATATACATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATAT--ATACACTTTCACATTCATCACATCGGCCATTAGGC
47690920 CTTATCACATATACATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATAT--ATACACTTTCACATTCATCACATCGGCCATTAGGC
47690969 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
47691016 CTTATCACATATATACACTTTC
1 CTTATCACATATATACACTTTC
47691038 TTGGCTGAAT
Statistics
Matches: 560, Mismatches: 23, Indels: 14
0.94 0.04 0.02
Matches are distributed among these distances:
45 43 0.08
46 2 0.00
47 350 0.62
48 52 0.09
49 113 0.20
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:47690732 original size:96 final size:94
Alignment explanation
Indices: 47690401--47691037 Score: 1055
Period size: 96 Copynumber: 6.7 Consensus size: 94
47690391 GCCCTTCGGA
* * * * * * * * * *
47690401 CTTATCACATTTATGCACTTTCACATCCATTACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
47690466 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
47690495 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT-T-ACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
47690558 TTTCACATTCATCACATCGGCTATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
*
47690587 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
47690652 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
* *
47690681 CTTATCACATATACATACACTTTCACATTCATCACATCAGCCATTAAGCCTTATCACATATATAC
1 CTTATCACATAT--ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
47690746 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
47690777 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAATACA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT-ATACA
*
47690842 CTTTCACATTCATCACATCGG-CTTTAGGC
65 CTTTCACATTCATCACATCGGCCATTAGGC
47690871 CTTATCACATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATACAT
1 CTTATCACATAT--ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT--AT
47690936 ACACTTTCACATTCATCACATCGGCCATTAGGC
62 ACACTTTCACATTCATCACATCGGCCATTAGGC
47690969 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
47691034 TTTC
66 TTTC
47691038 TTGGCTGAAT
Statistics
Matches: 514, Mismatches: 20, Indels: 18
0.93 0.04 0.03
Matches are distributed among these distances:
92 89 0.17
93 2 0.00
94 166 0.32
95 26 0.05
96 186 0.36
97 26 0.05
98 19 0.04
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:47690798 original size:143 final size:141
Alignment explanation
Indices: 47690401--47691037 Score: 1055
Period size: 143 Copynumber: 4.5 Consensus size: 141
47690391 GCCCTTCGGA
* * * * * * * * * *
47690401 CTTATCACATTTATGCACTTTCACATCCATTACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
47690466 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
47690531 GGCCATTAGGC
131 GGCCATTAGGC
* *
47690542 CTT-T-ACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
47690605 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
47690670 GGCCATTAGGC
131 GGCCATTAGGC
* *
47690681 CTTATCACATATACATACACTTTCACATTCATCACATCAGCCATTAAGCCTTATCACATATATAC
1 CTTATCACATAT--ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
47690746 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
47690811 TCGGCCATTAGGC
129 TCGGCCATTAGGC
*
47690824 CTTATCACATATAATACACTTTCACATTCATCACATCGG-CTTTAGGCCTTATCACATATACATA
1 CTTATCACATAT-ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT--ATA
47690888 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACATTCATC
63 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT--ATACACTTTCACATTCATC
47690953 ACATCGGCCATTAGGC
126 ACATCGGCCATTAGGC
47690969 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
47691034 TTTC
66 TTTC
47691038 TTGGCTGAAT
Statistics
Matches: 466, Mismatches: 21, Indels: 16
0.93 0.04 0.03
Matches are distributed among these distances:
139 126 0.27
140 2 0.00
141 27 0.06
142 25 0.05
143 194 0.42
144 26 0.06
145 66 0.14
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (141 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGC
Found at i:47693616 original size:7 final size:7
Alignment explanation
Indices: 47693596--47693660 Score: 69
Period size: 7 Copynumber: 9.0 Consensus size: 7
47693586 TTAAATATTA
47693596 AATTTTT
1 AATTTTT
47693603 AAGTTTTTT
1 AA--TTTTT
*
47693612 ATTTTTTT
1 A-ATTTTT
47693620 AATTTTT
1 AATTTTT
47693627 AATTTTT
1 AATTTTT
47693634 AA-TTTT
1 AATTTTT
*
47693640 AAATTTT
1 AATTTTT
*
47693647 AAATTTT
1 AATTTTT
47693654 AATTTTT
1 AATTTTT
47693661 TTTGAATATT
Statistics
Matches: 51, Mismatches: 3, Indels: 8
0.82 0.05 0.13
Matches are distributed among these distances:
6 6 0.12
7 33 0.65
8 6 0.12
9 6 0.12
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (7 bp):
AATTTTT
Found at i:47693641 original size:20 final size:20
Alignment explanation
Indices: 47693616--47693659 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
47693606 TTTTTTATTT
* *
47693616 TTTTAATTTTTAATTTTTAA
1 TTTTAAATTTTAAATTTTAA
47693636 TTTTAAATTTTAAATTTTAA
1 TTTTAAATTTTAAATTTTAA
47693656 TTTT
1 TTTT
47693660 TTTTGAATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (20 bp):
TTTTAAATTTTAAATTTTAA
Found at i:47693680 original size:9 final size:8
Alignment explanation
Indices: 47693593--47693687 Score: 65
Period size: 8 Copynumber: 11.9 Consensus size: 8
47693583 ATATTAAATA
47693593 TTAAATTT
1 TTAAATTT
*
47693601 TTAAGTTT
1 TTAAATTT
* *
47693609 TTTATTTT
1 TTAAATTT
*
47693617 TTTAATTT
1 TTAAATTT
47693625 TT-AATTT
1 TTAAATTT
47693632 TT-AA-TT
1 TTAAATTT
47693638 TTAAA-TT
1 TTAAATTT
47693645 TTAAA-TT
1 TTAAATTT
*
47693652 TTAATTTTTT
1 TTAA--ATTT
47693662 TTGAATATTT
1 TT-AA-ATTT
47693672 TTATAATTT
1 TTA-AATTT
47693681 TTAAATT
1 TTAAATT
47693688 AACATATAAA
Statistics
Matches: 75, Mismatches: 6, Indels: 12
0.81 0.06 0.13
Matches are distributed among these distances:
6 4 0.05
7 24 0.32
8 26 0.35
9 8 0.11
10 11 0.15
11 2 0.03
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (8 bp):
TTAAATTT
Found at i:47694685 original size:7 final size:7
Alignment explanation
Indices: 47694673--47694854 Score: 75
Period size: 7 Copynumber: 25.6 Consensus size: 7
47694663 CTAATTAATA
47694673 TAAACCC
1 TAAACCC
47694680 TAAACCCC
1 TAAA-CCC
**
47694688 TATCCCC
1 TAAACCC
*
47694695 T-ATCTCC
1 TAAAC-CC
47694702 TAAACCC
1 TAAACCC
47694709 TAAACCC
1 TAAACCC
*
47694716 T-ATCCC
1 TAAACCC
*
47694722 TATAAACCT
1 --TAAACCC
* *
47694731 TAAATCA
1 TAAACCC
* *
47694738 TAAAACA
1 TAAACCC
47694745 TAAACCC
1 TAAACCC
47694752 TAAACCCC
1 TAAA-CCC
47694760 T-AACCC
1 TAAACCC
47694766 TTAAACCC
1 -TAAACCC
*
47694774 TAACCCC
1 TAAACCC
*
47694781 TAAACCT
1 TAAACCC
47694788 TAAACCC
1 TAAACCC
* *
47694795 -CAACACT
1 TAAAC-CC
*
47694802 TAAACCA
1 TAAACCC
*
47694809 TAAACCA
1 TAAACCC
** *
47694816 TAAGTCA
1 TAAACCC
*
47694823 TAAACCA
1 TAAACCC
**
47694830 TAAACTA
1 TAAACCC
47694837 TAAACCC
1 TAAACCC
*
47694844 TAAACCT
1 TAAACCC
47694851 TAAA
1 TAAA
47694855 ATAGTAACTC
Statistics
Matches: 135, Mismatches: 29, Indels: 22
0.73 0.16 0.12
Matches are distributed among these distances:
6 11 0.08
7 101 0.75
8 20 0.15
9 3 0.02
ACGTcount: A:0.43, C:0.36, G:0.01, T:0.21
Consensus pattern (7 bp):
TAAACCC
Found at i:47694727 original size:22 final size:22
Alignment explanation
Indices: 47694702--47694794 Score: 84
Period size: 22 Copynumber: 4.3 Consensus size: 22
47694692 CCCTATCTCC
*
47694702 TAAACCCTAAACCCTATCCCTA
1 TAAACCCTAAACCCTAACCCTA
* * * **
47694724 TAAACCTTAAATCATAAAAC-A
1 TAAACCCTAAACCCTAACCCTA
47694745 TAAACCCTAAACCCCTAACCCT-
1 TAAACCCTAAA-CCCTAACCCTA
* *
47694767 TAAACCCTAACCCCTAAACCT-
1 TAAACCCTAAACCCTAACCCTA
47694788 TAAACCC
1 TAAACCC
47694795 CAACACTTAA
Statistics
Matches: 56, Mismatches: 13, Indels: 5
0.76 0.18 0.07
Matches are distributed among these distances:
21 27 0.48
22 29 0.52
ACGTcount: A:0.42, C:0.38, G:0.00, T:0.20
Consensus pattern (22 bp):
TAAACCCTAAACCCTAACCCTA
Found at i:47694826 original size:21 final size:21
Alignment explanation
Indices: 47694802--47694903 Score: 96
Period size: 21 Copynumber: 4.8 Consensus size: 21
47694792 CCCCAACACT
* *
47694802 TAAACCATAAACCATAAGTCA
1 TAAACCATAAACTATAAATCA
* *
47694823 TAAACCATAAACTATAAACCC
1 TAAACCATAAACTATAAATCA
* * *
47694844 TAAACCTTAAAATAGTAACTCA
1 TAAACCATAAACTA-TAAATCA
* ** *
47694866 TAAACCATATACCCTAAATCC
1 TAAACCATAAACTATAAATCA
47694887 TAAACCATAAACTATAA
1 TAAACCATAAACTATAA
47694904 TGATAATTAA
Statistics
Matches: 61, Mismatches: 19, Indels: 2
0.74 0.23 0.02
Matches are distributed among these distances:
21 48 0.79
22 13 0.21
ACGTcount: A:0.51, C:0.25, G:0.02, T:0.23
Consensus pattern (21 bp):
TAAACCATAAACTATAAATCA
Found at i:47694897 original size:7 final size:7
Alignment explanation
Indices: 47694723--47694903 Score: 82
Period size: 7 Copynumber: 25.6 Consensus size: 7
47694713 CCCTATCCCT
47694723 ATAAACC
1 ATAAACC
* *
47694730 TTAAATC
1 ATAAACC
*
47694737 ATAAAAC
1 ATAAACC
47694744 ATAAACC
1 ATAAACC
*
47694751 CTAAACCC
1 ATAAA-CC
* *
47694759 CTAACCC
1 ATAAACC
*
47694766 TTAAACC
1 ATAAACC
* *
47694773 CTAACCC
1 ATAAACC
*
47694780 CTAAACC
1 ATAAACC
*
47694787 TTAAACC
1 ATAAACC
**
47694794 -CCAACAC
1 ATAAAC-C
*
47694801 TTAAACC
1 ATAAACC
47694808 ATAAACC
1 ATAAACC
**
47694815 ATAAGTC
1 ATAAACC
47694822 ATAAACC
1 ATAAACC
*
47694829 ATAAACT
1 ATAAACC
47694836 ATAAACC
1 ATAAACC
*
47694843 CTAAACC
1 ATAAACC
*
47694850 TTAAA--
1 ATAAACC
47694855 ATAGTAACTC
1 ATA--AAC-C
47694865 ATAAACC
1 ATAAACC
*
47694872 ATATACC
1 ATAAACC
*
47694879 CTAAATCC
1 ATAAA-CC
47694887 -TAAACC
1 ATAAACC
*
47694893 ATAAACT
1 ATAAACC
47694900 ATAA
1 ATAA
47694904 TGATAATTAA
Statistics
Matches: 133, Mismatches: 31, Indels: 20
0.72 0.17 0.11
Matches are distributed among these distances:
5 2 0.02
6 5 0.04
7 109 0.82
8 14 0.11
10 3 0.02
ACGTcount: A:0.48, C:0.30, G:0.01, T:0.21
Consensus pattern (7 bp):
ATAAACC
Found at i:47695323 original size:40 final size:42
Alignment explanation
Indices: 47695249--47695344 Score: 124
Period size: 40 Copynumber: 2.3 Consensus size: 42
47695239 CTATAGTGAC
* * *
47695249 GTTTTTCAAAAAGCGCTGCTAATGGTCGACCTATAGC-G-GT
1 GTTTTTTAAAAAGCGCTGCTAATGCTCAACCTATAGCAGCGT
* *
47695289 GTTTTTTAAAAAGTGCTGCTAATGCTCAATCTATAGCAGCGT
1 GTTTTTTAAAAAGCGCTGCTAATGCTCAACCTATAGCAGCGT
*
47695331 TTTTTTTAAAAAGC
1 GTTTTTTAAAAAGC
47695345 ACAAATAATG
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
40 32 0.68
41 1 0.02
42 14 0.30
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.35
Consensus pattern (42 bp):
GTTTTTTAAAAAGCGCTGCTAATGCTCAACCTATAGCAGCGT
Found at i:47695461 original size:40 final size:40
Alignment explanation
Indices: 47695406--47695523 Score: 173
Period size: 40 Copynumber: 3.0 Consensus size: 40
47695396 TTTTGCGTCG
* * * *
47695406 TTTTTCAAAAAGCGCCTCTAATGGTCAACCTATAGCGGCA
1 TTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGCGGCA
* *
47695446 TTTTTTAAAAAGCGCCGCTAATGCTCGATCTATAGCGGCG
1 TTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGCGGCA
*
47695486 TTTTTCAAAAAGCACCGCTAATGCTCGATCTATAGCGG
1 TTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGCGG
47695524 TGTTTATTAT
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 70 1.00
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (40 bp):
TTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGCGGCA
Found at i:47698511 original size:29 final size:29
Alignment explanation
Indices: 47698477--47698549 Score: 103
Period size: 29 Copynumber: 2.5 Consensus size: 29
47698467 CTACTTGTGT
*
47698477 CATGTGGGCTACACAG-GCATGTGTGAGGC
1 CATGTGGGCTACAC-GTACATGTGTGAGGC
*
47698506 CATGTGGGCTACACGTACGTGTGTGAGGC
1 CATGTGGGCTACACGTACATGTGTGAGGC
*
47698535 CATGTGGGCCACACG
1 CATGTGGGCTACACG
47698550 GGTTGGCCAG
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 1 0.03
29 39 0.98
ACGTcount: A:0.19, C:0.23, G:0.37, T:0.21
Consensus pattern (29 bp):
CATGTGGGCTACACGTACATGTGTGAGGC
Found at i:47702297 original size:20 final size:20
Alignment explanation
Indices: 47702267--47702313 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
47702257 CCAAATGCCT
* *
47702267 AAAACCAAGCTAAATTACCC
1 AAAACCCAGCTAAACTACCC
*
47702287 ATAACCCAGCTAAACTACCC
1 AAAACCCAGCTAAACTACCC
47702307 AAAACCC
1 AAAACCC
47702314 GGTACCCATT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.47, C:0.36, G:0.04, T:0.13
Consensus pattern (20 bp):
AAAACCCAGCTAAACTACCC
Found at i:47706642 original size:16 final size:14
Alignment explanation
Indices: 47706610--47706662 Score: 65
Period size: 14 Copynumber: 3.7 Consensus size: 14
47706600 ATCGATACCT
47706610 TTTGCATTCATGCA
1 TTTGCATTCATGCA
47706624 TTTGCATCTCATAGCA
1 TTTGCAT-TCAT-GCA
47706640 TTT-CATTGCAT-CA
1 TTTGCATT-CATGCA
47706653 TTTGCATTCA
1 TTTGCATTCA
47706663 AAATTATAGA
Statistics
Matches: 35, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
13 7 0.20
14 12 0.34
15 10 0.29
16 6 0.17
ACGTcount: A:0.23, C:0.23, G:0.11, T:0.43
Consensus pattern (14 bp):
TTTGCATTCATGCA
Found at i:47711876 original size:132 final size:131
Alignment explanation
Indices: 47711710--47712097 Score: 381
Period size: 132 Copynumber: 2.9 Consensus size: 131
47711700 ATAGCAGATT
* * * * *
47711710 TGGCATCCCTATGTTTATAGGGAACATATCGAAGATAGCGGATTTGGCATCCTTGTGTTTATAGG
1 TGGCATCCCTATGTTTATAGGGAACAAATCGAAGATAGCAGATTTGACATCCCTGTGTTTATAAG
*
47711775 GAACAGATCGAAGATAGCAGATCTGGCACTCC-TATGCTTACAGCGAAGCAGATCGAAGATTTCA
66 GAACAAATCGAAGATAGCAGATCTGGCA-TCCTTATGCTTACAGCGAA-CAGATCGAAGATTTCA
47711839 GCA
129 GCA
* *
47711842 TGGCATCCCTGTGTTTATAGGGAACAAATTGAAGATAGCAGATTTGACATCCCTGTGTTTATAAG
1 TGGCATCCCTATGTTTATAGGGAACAAATCGAAGATAGCAGATTTGACATCCCTGTGTTTATAAG
* * * * * **
47711907 GAACAAATCGAAGATAGCAGATTTGGCATCCTTGTGTTTATAGGGAACAGATCGAAGATAGCAG-
66 GAACAAATCGAAGATAGCAGATCTGGCATCCTTATGCTTACAGCGAACAGATCGAAGATTTCAGC
47711971 A
131 A
* * * * * ** * *
47711972 TCTGACA-CTCCTATGCTTACAGCGAAGCAGATCGAAGATTTCAGCTTAG-CATCCCTGTGTTTA
1 --TGGCATC-CCTATGTTTATAGGGAA-CAAATCGAAGATAGCAGATTTGACATCCCTGTGTTTA
* * * * * * * * *
47712035 TAGGGAACAAGTTG-AGAATAGCAGATTTGGCATCCTTGTGATTATAGGGAACATATCGAAGAT
62 TAAGGAACAAATCGAAG-ATAGCAGATCTGGCATCCTTATGCTTACAGCGAACAGATCGAAGAT
47712098 AGTAGATCTG
Statistics
Matches: 219, Mismatches: 31, Indels: 12
0.84 0.12 0.05
Matches are distributed among these distances:
130 1 0.00
131 21 0.10
132 181 0.83
133 16 0.07
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.28
Consensus pattern (131 bp):
TGGCATCCCTATGTTTATAGGGAACAAATCGAAGATAGCAGATTTGACATCCCTGTGTTTATAAG
GAACAAATCGAAGATAGCAGATCTGGCATCCTTATGCTTACAGCGAACAGATCGAAGATTTCAGC
A
Found at i:47711919 original size:176 final size:176
Alignment explanation
Indices: 47711612--47712632 Score: 1036
Period size: 176 Copynumber: 5.8 Consensus size: 176
47711602 AGGTTAAAGT
* * * *
47711612 ATAGCAGATCTGATACTCTTGTGCTTACAGCGAAGCAGATCAAAGATTTCAGCATGACATCCCTG
1 ATAGCAGATCTGACACTCCTGTGCTTACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTG
* * * *
47711677 TGTTTATAGGGAACAAGTTGAAAATAGCAGATTTGGCATCCCTATGTTTATAGGGAACATATCGA
66 TGTTTATAGGGAACAAATTGAAGATAGCAGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGA
* *
47711742 AGATAGCGGATTTGGCATCCTTGTGTTTATAGGGAACAGATCGAAG
131 AGATAGCAGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAG
* *
47711788 ATAGCAGATCTGGCACTCCTATGCTTACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTG
1 ATAGCAGATCTGACACTCCTGTGCTTACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTG
* *
47711853 TGTTTATAGGGAACAAATTGAAGATAGCAGATTTGACATCCCTGTGTTTATAAGGAACAAATCGA
66 TGTTTATAGGGAACAAATTGAAGATAGCAGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGA
*
47711918 AGATAGCAGATTTGGCATCCTTGTGTTTATAGGGAACAGATCGAAG
131 AGATAGCAGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAG
* * *
47711964 ATAGCAGATCTGACACTCCTATGCTTACAGCGAAGCAGATCGAAGATTTCAGCTTAGCATCCCTG
1 ATAGCAGATCTGACACTCCTGTGCTTACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTG
* * * *
47712029 TGTTTATAGGGAACAAGTTG-AGAATAGCAGATTTGGCATCCTTGTGATTATAGGGAACATATCG
66 TGTTTATAGGGAACAAATTGAAG-ATAGCAGATTTGGCATCCCTGTGTTTATAGGGAACAAATCG
* * * * * *
47712093 AAGATAGTAGATCTGACA-CTCCTGTGCTTACAGCGAAGCAGATCGAAG
130 AAGATAGCAGATTTGGCATC-CCTGTGTTTATAGGGAA-CAGATCGAAG
** * * * * * **
47712141 ATTTCAG--CATGGCA-TCCCTGTGTTTATAGGGAA-CA-AGTTG-AGAATAGCAG-ATTTGGCA
1 ATAGCAGATC-TGACACT-CCTGTGCTTACAGCGAAGCAGA-TCGAAG-ATTTCAGCA--TGGCA
* * * * * * * *
47712199 TCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGC
60 TCCCTGTGTTTATAGGGAACAAATTGAAGATAGCAGATTTGGCATCCCTGTGTTTATAGGGAA-C
* *** * *
47712264 AGATCGAAGATTTTAGCA--TGGCATCCCTATGTTTATAGGGAACA-AGTTGAAG
124 AAATCGAAGATAGCAG-ATTTGGCATCCCTGTGTTTATAGGGAACAGA-TCGAAG
* * * * * ** *
47712316 ATAGCAGATTTGGCA-TCCCTGTGTTTATAGGGAA-CAGATCGAAGATAGCAG-ATCTGACA-CT
1 ATAGCAGATCTGACACT-CCTGTGCTTACAGCGAAGCAGATCGAAGATTTCAGCA--TGGCATC-
* * ** * **
47712377 CCTGTGCTTACAATGAAGCAGATTGAAGATATTAGCA--TGGCATCCCTGTGTTTATAGGGAACA
62 CCTGTGTTTATAGGGAA-CAAATTGAAGATAGCAG-ATTTGGCATCCCTGTGTTTATAGGGAACA
* *
47712440 AGTTG-AGAATAGCAGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAG
125 AATCGAAG-ATAGCAGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAG
* * * *
47712492 ATAGCAGATCTGACATTCATGTGCTTACAGTGAAGCAGATCGAAGATTTTAGCATGGCATCCCTG
1 ATAGCAGATCTGACACTCCTGTGCTTACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTG
* * * * *
47712557 TGTTTATAGGGAATAAGTTGAAGATAGCAGATTTGGCATCCTTGTTTTTATAGGGAACAGATCGA
66 TGTTTATAGGGAACAAATTGAAGATAGCAGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGA
*
47712622 AGATAGTAGAT
131 AGATAGCAGAT
47712633 CTGACACTCC
Statistics
Matches: 702, Mismatches: 111, Indels: 64
0.80 0.13 0.07
Matches are distributed among these distances:
174 8 0.01
175 47 0.07
176 576 0.82
177 68 0.10
178 3 0.00
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.28
Consensus pattern (176 bp):
ATAGCAGATCTGACACTCCTGTGCTTACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTG
TGTTTATAGGGAACAAATTGAAGATAGCAGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGA
AGATAGCAGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAG
Found at i:47712164 original size:264 final size:264
Alignment explanation
Indices: 47711669--47712980 Score: 1779
Period size: 264 Copynumber: 5.0 Consensus size: 264
47711659 TTCAGCATGA
* * * * * * * * *
47711669 CATCCCTGTGTTTATAGGGAACA-AGTTGAAAATAGCAGATTTGGCATCCCTATGTTTATAGGGA
1 CATCCCTGTGTTTATAGGGAACAGA-TCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGCGA
* ** * * *
47711733 A-CATATCGAAGATAGC-GGATTTGGCATCCTTGTGTTTATAGGGAAC-AGATCGAAGATAGCAG
65 AGCAGATCGAAGATTTCAGCA--TGGCATCCCTGTGTTTATAGGGAACAAG-TTGAAGATAGCAG
* * * * * ** * *
47711795 ATCTGGCA-CTCCTATGCTTACAGCGAAGCAGATCGAAGATTTCAG--CATGGCA-TCCCTGTGT
127 ATTTGGCATC-CCTGTGTTTATAGGGAA-CAGATCGAAGATAGCAGATC-TGACACT-CCTGTGC
* * * * ** * * * *
47711856 TTATAGGGAA-CAAATTGAAGATAGCAG-ATTTGACATCCCTGTGTTTATAAGGAACAAATCGAA
188 TTACAGCGAAGCAGATCGAAGATTTCAGCA--TGGCATCCCTGTGTTTATAGGGAACAAGTTGAA
47711919 GATAGCAGATTTGG
251 GATAGCAGATTTGG
* * *
47711933 CATCCTTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACACTCCTATGCTTACAGCGAA
1 CATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGCGAA
* *
47711998 GCAGATCGAAGATTTCAGCTTAGCATCCCTGTGTTTATAGGGAACAAGTTG-AGAATAGCAGATT
66 GCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAG-ATAGCAGATT
* * * *
47712062 TGGCATCCTTGTGATTATAGGGAACATATCGAAGATAGTAGATCTGACACTCCTGTGCTTACAGC
130 TGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACACTCCTGTGCTTACAGC
47712127 GAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTG-AGAATAGCAG
195 GAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAG-ATAGCAG
47712191 ATTTGG
259 ATTTGG
*
47712197 CATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAA
1 CATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGCGAA
* *
47712262 GCAGATCGAAGATTTTAGCATGGCATCCCTATGTTTATAGGGAACAAGTTGAAGATAGCAGATTT
66 GCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTT
**
47712327 GGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACACTCCTGTGCTTACAATG
131 GGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACACTCCTGTGCTTACAGCG
*
47712392 AAGCAGATTGAAGATATT-AGCATGGCATCCCTGTGTTTATAGGGAACAAGTTG-AGAATAGCAG
196 AAGCAGATCGAAGAT-TTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAG-ATAGCAG
47712455 ATTTGG
259 ATTTGG
* *
47712461 CATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCATGTGCTTACAGTGAA
1 CATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGCGAA
* *
47712526 GCAGATCGAAGATTTTAGCATGGCATCCCTGTGTTTATAGGGAATAAGTTGAAGATAGCAGATTT
66 GCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTT
* * * *
47712591 GGCATCCTTGTTTTTATAGGGAACAGATCGAAGATAGTAGATCTGACACTCCTGTGCTTACAGCA
131 GGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACACTCCTGTGCTTACAGCG
* * *
47712656 AAGCAGATCGAAGATTTTAGCATGGCATCCCTATATTTATAGGGAACAAGTTGAAGATAGCAGAT
196 AAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGAT
47712721 TTGG
261 TTGG
*
47712725 CATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCAGACATTCCTGTGCTTACAGCGAA
1 CATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGCGAA
* *
47712790 GTAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGAAGATTT
66 GCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTT
* * * *
47712855 GGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTAACACTCCTGTGATTATAGCG
131 GGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACACTCCTGTGCTTACAGCG
* *
47712920 AAGCAGATCGAAAATTTCAGCATGGTATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGC
196 AAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGC
47712981 CAATTTGACA
Statistics
Matches: 945, Mismatches: 87, Indels: 32
0.89 0.08 0.03
Matches are distributed among these distances:
263 19 0.02
264 887 0.94
265 37 0.04
266 2 0.00
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.28
Consensus pattern (264 bp):
CATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGCGAA
GCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTT
GGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACACTCCTGTGCTTACAGCG
AAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGAT
TTGG
Found at i:47712987 original size:132 final size:132
Alignment explanation
Indices: 47711889--47712980 Score: 1760
Period size: 132 Copynumber: 8.3 Consensus size: 132
47711879 GCAGATTTGA
* * * *
47711889 CATCCCTGTGTTTATAAGGAACAAATCGAAGATAGCAGATTTGGCATCCTTGTGTTTATAGGGAA
1 CATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTGTGTTTATAGGGAA
* *
47711954 CAGATCGAAGATAGCAGATCTGACACTCCTATGCTTACAGCGAAGCAGATCGAAGATTTCAGCTT
66 CAGATCGAAGATAGCAGATCTGACACTCCTGTGCTTACAGCGAAGCAGATCGAAGATTTCAGCAT
*
47712019 AG
131 GG
* *
47712021 CATCCCTGTGTTTATAGGGAACAAGTTG-AGAATAGCAGATTTGGCATCCTTGTGATTATAGGGA
1 CATCCCTGTGTTTATAGGGAACAAGTTGAAG-ATAGCAGATTTGGCATCCCTGTGTTTATAGGGA
* *
47712085 ACATATCGAAGATAGTAGATCTGACACTCCTGTGCTTACAGCGAAGCAGATCGAAGATTTCAGCA
65 ACAGATCGAAGATAGCAGATCTGACACTCCTGTGCTTACAGCGAAGCAGATCGAAGATTTCAGCA
47712150 TGG
130 TGG
47712153 CATCCCTGTGTTTATAGGGAACAAGTTG-AGAATAGCAGATTTGGCATCCCTGTGTTTATAGGGA
1 CATCCCTGTGTTTATAGGGAACAAGTTGAAG-ATAGCAGATTTGGCATCCCTGTGTTTATAGGGA
* * *
47712217 ACAGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTTAGCA
65 ACAGATCGAAGATAGCAGATCTGACACTCCTGTGCTTACAGCGAAGCAGATCGAAGATTTCAGCA
47712282 TGG
130 TGG
*
47712285 CATCCCTATGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTGTGTTTATAGGGAA
1 CATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTGTGTTTATAGGGAA
** *
47712350 CAGATCGAAGATAGCAGATCTGACACTCCTGTGCTTACAATGAAGCAGATTGAAGATATT-AGCA
66 CAGATCGAAGATAGCAGATCTGACACTCCTGTGCTTACAGCGAAGCAGATCGAAGAT-TTCAGCA
47712414 TGG
130 TGG
47712417 CATCCCTGTGTTTATAGGGAACAAGTTG-AGAATAGCAGATTTGGCATCCCTGTGTTTATAGGGA
1 CATCCCTGTGTTTATAGGGAACAAGTTGAAG-ATAGCAGATTTGGCATCCCTGTGTTTATAGGGA
* * * *
47712481 ACAGATCGAAGATAGCAGATCTGACATTCATGTGCTTACAGTGAAGCAGATCGAAGATTTTAGCA
65 ACAGATCGAAGATAGCAGATCTGACACTCCTGTGCTTACAGCGAAGCAGATCGAAGATTTCAGCA
47712546 TGG
130 TGG
* * *
47712549 CATCCCTGTGTTTATAGGGAATAAGTTGAAGATAGCAGATTTGGCATCCTTGTTTTTATAGGGAA
1 CATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTGTGTTTATAGGGAA
* * *
47712614 CAGATCGAAGATAGTAGATCTGACACTCCTGTGCTTACAGCAAAGCAGATCGAAGATTTTAGCAT
66 CAGATCGAAGATAGCAGATCTGACACTCCTGTGCTTACAGCGAAGCAGATCGAAGATTTCAGCAT
47712679 GG
131 GG
* *
47712681 CATCCCTATATTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTGTGTTTATAGGGAA
1 CATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTGTGTTTATAGGGAA
* * *
47712746 CAGATCGAAGATAGCAGATCAGACATTCCTGTGCTTACAGCGAAGTAGATCGAAGATTTCAGCAT
66 CAGATCGAAGATAGCAGATCTGACACTCCTGTGCTTACAGCGAAGCAGATCGAAGATTTCAGCAT
47712811 GG
131 GG
*
47712813 CATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGAAGATTTGGCATCCCTGTGTTTATAGGGAA
1 CATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTGTGTTTATAGGGAA
* * * * *
47712878 CAAATCGAAGATAGCAGATCTAACACTCCTGTGATTATAGCGAAGCAGATCGAAAATTTCAGCAT
66 CAGATCGAAGATAGCAGATCTGACACTCCTGTGCTTACAGCGAAGCAGATCGAAGATTTCAGCAT
47712943 GG
131 GG
*
47712945 TATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGC
1 CATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGC
47712981 CAATTTGACA
Statistics
Matches: 897, Mismatches: 57, Indels: 12
0.93 0.06 0.01
Matches are distributed among these distances:
131 6 0.01
132 885 0.99
133 6 0.01
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.28
Consensus pattern (132 bp):
CATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTGTGTTTATAGGGAA
CAGATCGAAGATAGCAGATCTGACACTCCTGTGCTTACAGCGAAGCAGATCGAAGATTTCAGCAT
GG
Found at i:47713264 original size:20 final size:20
Alignment explanation
Indices: 47713236--47713285 Score: 82
Period size: 20 Copynumber: 2.5 Consensus size: 20
47713226 AACCCAAATG
*
47713236 CCTAAAACCCAGCTAAATTA
1 CCTAAAACCCAGCTAAACTA
*
47713256 CCTATAACCCAGCTAAACTA
1 CCTAAAACCCAGCTAAACTA
47713276 CCTAAAACCC
1 CCTAAAACCC
47713286 GGTACCCATT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.42, C:0.36, G:0.04, T:0.18
Consensus pattern (20 bp):
CCTAAAACCCAGCTAAACTA
Found at i:47715248 original size:27 final size:27
Alignment explanation
Indices: 47715218--47715300 Score: 72
Period size: 27 Copynumber: 3.3 Consensus size: 27
47715208 ATTCGGCCTT
47715218 ATCACATATACATACACTTTCACATTC
1 ATCACATATACATACACTTTCACATTC
* * *
47715245 ATCACAT-TGGC---CA--TTCGGCCTT-
1 ATCACATAT-ACATACACTTTC-ACATTC
47715267 ATCACATATACATACACTTTCACATTC
1 ATCACATATACATACACTTTCACATTC
47715294 ATCACAT
1 ATCACAT
47715301 TGGCCATTCG
Statistics
Matches: 41, Mismatches: 6, Indels: 18
0.63 0.09 0.28
Matches are distributed among these distances:
22 11 0.27
23 4 0.10
24 2 0.05
25 2 0.05
26 4 0.10
27 18 0.44
ACGTcount: A:0.33, C:0.30, G:0.05, T:0.33
Consensus pattern (27 bp):
ATCACATATACATACACTTTCACATTC
Found at i:47715248 original size:49 final size:49
Alignment explanation
Indices: 47715180--47715350 Score: 303
Period size: 49 Copynumber: 3.5 Consensus size: 49
47715170 TATCACAGTT
*
47715180 ATACACTTCCAC-TTCCATCACATTGGCCATTCGGCCTTATCACATATAC
1 ATACACTTTCACATT-CATCACATTGGCCATTCGGCCTTATCACATATAC
47715229 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
47715278 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
47715325 ATACACTTTCACATTCATCACATTGG
1 ATACACTTTCACATTCATCACATTGG
47715351 ATCCTAAATC
Statistics
Matches: 120, Mismatches: 1, Indels: 4
0.96 0.01 0.03
Matches are distributed among these distances:
47 30 0.25
49 88 0.73
50 2 0.02
ACGTcount: A:0.28, C:0.32, G:0.08, T:0.32
Consensus pattern (49 bp):
ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
Found at i:47715395 original size:96 final size:94
Alignment explanation
Indices: 47715180--47715371 Score: 250
Period size: 98 Copynumber: 2.0 Consensus size: 94
47715170 TATCACAGTT
*
47715180 ATACACTTCCAC-TTCCATCACATTGGCCATTCGGCCTTATCACATATACATACACTTTCACATT
1 ATACACTTTCACATT-CATCACATTGGCCATTCGGCCTTATCACA-ATACATACACTTTCACATT
* * *
47715244 CATCACATTGGCCATTCGGCCTTATCACATATAC
64 CATCACATTGG-CATT--GCCTAATCAAATATAA
47715278 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC-ATACATACACTTTCACATTCA
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACAATACATACACTTTCACATTCA
47715342 TCACATTGG-A-T-CCTAAATCAAAATATAA
66 TCACATTGGCATTGCCT-AATC-AAATATAA
47715370 AT
1 AT
47715372 TTTTTTTCAT
Statistics
Matches: 87, Mismatches: 4, Indels: 12
0.84 0.04 0.12
Matches are distributed among these distances:
90 3 0.03
91 3 0.03
92 8 0.09
93 1 0.01
94 1 0.01
96 30 0.34
98 39 0.45
99 2 0.02
ACGTcount: A:0.31, C:0.30, G:0.07, T:0.32
Consensus pattern (94 bp):
ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACAATACATACACTTTCACATTCA
TCACATTGGCATTGCCTAATCAAATATAA
Found at i:47718916 original size:3 final size:3
Alignment explanation
Indices: 47718908--47718946 Score: 69
Period size: 3 Copynumber: 12.7 Consensus size: 3
47718898 ATGTTACTAC
47718908 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATAT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT-T ATT AT
47718947 CACATATGTT
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
3 32 0.91
4 3 0.09
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:47732869 original size:43 final size:43
Alignment explanation
Indices: 47732808--47732894 Score: 174
Period size: 43 Copynumber: 2.0 Consensus size: 43
47732798 GAGGTTTCCA
47732808 TACATCTAGTTTAATCAAGATTATTTACAAGTGTATAATTGTG
1 TACATCTAGTTTAATCAAGATTATTTACAAGTGTATAATTGTG
47732851 TACATCTAGTTTAATCAAGATTATTTACAAGTGTATAATTGTG
1 TACATCTAGTTTAATCAAGATTATTTACAAGTGTATAATTGTG
47732894 T
1 T
47732895 TTTACTTTGA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.34, C:0.09, G:0.14, T:0.43
Consensus pattern (43 bp):
TACATCTAGTTTAATCAAGATTATTTACAAGTGTATAATTGTG
Found at i:47734872 original size:43 final size:41
Alignment explanation
Indices: 47734819--47734937 Score: 105
Period size: 43 Copynumber: 2.8 Consensus size: 41
47734809 TGATGTATCG
* * *
47734819 TACCAATGCCATGTCTCAGACATGGTCTTACATGGAAATCTCA
1 TACCGATGCCATGTC-CAGACATGGTCTTACA-CGAAACCTCA
* * **
47734862 TATCGATGCCAATAGCCCA-ACTATGGTCTTACACGATGCCTCA
1 TACCGATGCC-AT-GTCCAGAC-ATGGTCTTACACGAAACCTCA
*
47734905 TGCCGATGCCATGTCCTAGACATGGTCTTACAC
1 TACCGATGCCATGTCC-AGACATGGTCTTACAC
47734938 TAGCTCACAT
Statistics
Matches: 61, Mismatches: 10, Indels: 11
0.74 0.12 0.13
Matches are distributed among these distances:
41 3 0.05
42 15 0.25
43 26 0.43
44 15 0.25
45 2 0.03
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.27
Consensus pattern (41 bp):
TACCGATGCCATGTCCAGACATGGTCTTACACGAAACCTCA
Found at i:47735139 original size:96 final size:97
Alignment explanation
Indices: 47734904--47735129 Score: 341
Period size: 95 Copynumber: 2.4 Consensus size: 97
47734894 ACGATGCCTC
* *
47734904 ATGCCGATGCCATGTCCTAGACATGGTCTTACACTAGCTCACATAACAATGTCGATGCCATGTCC
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACAATGTCGATGCCATGTCC
* *
47734969 TAGACATGGTCTTACCTCTAGCTCACATAACA
66 CAGACATGGTCTTACCACTAGCTCACATAACA
* *
47735001 ATGCCGATGCCATGTCCCAAACATGGTCTTA-ACTGGCTCACATTACAATG-CTGATGCCATGTC
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACAATGTC-GATGCCATGTC
*
47735064 CCAGACATGGTCTTA-CACTGGCTCACATAACA
65 CCAGACATGGTCTTACCACTAGCTCACATAACA
* *
47735096 ATGCCAATGCCATATCCCAGACATGGTCTTACAC
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACAC
47735130 GGTTACACAT
Statistics
Matches: 117, Mismatches: 10, Indels: 5
0.89 0.08 0.04
Matches are distributed among these distances:
95 44 0.38
96 44 0.38
97 29 0.25
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.26
Consensus pattern (97 bp):
ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACAATGTCGATGCCATGTCC
CAGACATGGTCTTACCACTAGCTCACATAACA
Found at i:47735140 original size:48 final size:48
Alignment explanation
Indices: 47734904--47735129 Score: 337
Period size: 48 Copynumber: 4.7 Consensus size: 48
47734894 ACGATGCCTC
* *
47734904 ATGCCGATGCCATGTCCTAGACATGGTCTTACACTAGCTCACATAACA
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACA
* * * *
47734952 ATGTCGATGCCATGTCCTAGACATGGTCTTACCTCTAGCTCACATAACA
1 ATGCCGATGCCATGTCCCAGACATGGTCTTA-CACTGGCTCACATAACA
* *
47735001 ATGCCGATGCCATGTCCCAAACATGGTCTTA-ACTGGCTCACATTACA
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACA
*
47735048 ATGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACA
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACA
* *
47735096 ATGCCAATGCCATATCCCAGACATGGTCTTACAC
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACAC
47735130 GGTTACACAT
Statistics
Matches: 162, Mismatches: 14, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
47 42 0.26
48 76 0.47
49 44 0.27
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.26
Consensus pattern (48 bp):
ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACA
Found at i:47737917 original size:98 final size:95
Alignment explanation
Indices: 47737720--47738040 Score: 264
Period size: 98 Copynumber: 3.4 Consensus size: 95
47737710 GGGATAAAAT
* * ** *
47737720 TCTGACGTCATGTCCCAAACATGGTCTTACACTGGCTAGCA-CATCAAAGTCGATGCCATGTCCC
1 TCTGACG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCATC-TCAATGTCGATGCCATGTCCC
* * *
47737784 AGACAGGTCTTATACTGACTTTCATACATCGAG
63 AGAAAGGTCTTACACTGACTTTCATACATCAAG
* * * **
47737817 TCTGACGCCGTGTCCTAGATCGAT-T-TTACACTGGCTCTCATCTATCGGTGTCGATGCCATGTC
1 TCTGACG-CATGTCCCAGA-C-ATGTCTTACACTAGCTCTCATC--TCAATGTCGATGCCATGTC
*
47737880 CCAGATAGGTCTTACACT-AGCTTGT-ATATC-TCAAG
61 CCAGAAAGGTCTTACACTGA-CTT-TCATA-CATCAAG
* *
47737915 TCTGATGCATGTCCCAGACATGTCTTACATTAGCTCTCATCTCAATGTCGATG-CATGTCCCAGA
1 TCTGACGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAATGTCGATGCCATGTCCCAGA
* * * **
47737979 AATGTCTTACACTGGCTCTCATA-AT-GTG
66 AAGGTCTTACACTGACTTTCATACATCAAG
* * *
47738007 CCTGATGCATGTCCTAGACATGTCTTACACTAGC
1 TCTGACGCATGTCCCAGACATGTCTTACACTAGC
47738041 ACACATATCA
Statistics
Matches: 184, Mismatches: 28, Indels: 29
0.76 0.12 0.12
Matches are distributed among these distances:
92 32 0.17
93 2 0.01
94 27 0.15
95 12 0.07
96 15 0.08
97 42 0.23
98 50 0.27
99 4 0.02
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.31
Consensus pattern (95 bp):
TCTGACGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAATGTCGATGCCATGTCCCAGA
AAGGTCTTACACTGACTTTCATACATCAAG
Found at i:47737974 original size:46 final size:47
Alignment explanation
Indices: 47737842--47738040 Score: 194
Period size: 46 Copynumber: 4.2 Consensus size: 47
47737832 TAGATCGATT
* ** * *
47737842 TTACACTGGCTCTCATCTATCGGTGTC-GATGCCATGTCCCAGATAGGTC
1 TTACACTAGCTCTCATC--TCAATGTCTGATG-CATGTCCCAGACATGTC
* *
47737891 TTACACTAGCTTGTATATCTCAA-GTCTGATGCATGTCCCAGACATGTC
1 TTACACTAGC-TCT-CATCTCAATGTCTGATGCATGTCCCAGACATGTC
* *
47737939 TTACATTAGCTCTCATCTCAATGTC-GATGCATGTCCCAGAAATGTC
1 TTACACTAGCTCTCATCTCAATGTCTGATGCATGTCCCAGACATGTC
* *
47737985 TTACACTGGCTCTCA--T-AATGTGCCTGATGCATGTCCTAGACATGTC
1 TTACACTAGCTCTCATCTCAATGT--CTGATGCATGTCCCAGACATGTC
47738031 TTACACTAGC
1 TTACACTAGC
47738041 ACACATATCA
Statistics
Matches: 127, Mismatches: 16, Indels: 17
0.79 0.10 0.11
Matches are distributed among these distances:
43 5 0.04
44 1 0.01
45 1 0.01
46 68 0.54
47 5 0.04
48 27 0.21
49 15 0.12
50 2 0.02
51 3 0.02
ACGTcount: A:0.23, C:0.27, G:0.18, T:0.32
Consensus pattern (47 bp):
TTACACTAGCTCTCATCTCAATGTCTGATGCATGTCCCAGACATGTC
Found at i:47745704 original size:49 final size:49
Alignment explanation
Indices: 47745599--47745957 Score: 200
Period size: 49 Copynumber: 7.6 Consensus size: 49
47745589 CGGATAAAAT
* *
47745599 GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTAGC--ACATCAAA
1 GTCGATGCCATGTCCCAGACA-GGTCTTACACTGGCTATCATACATCAAG
* * * * *
47745647 GTCGATGCCACGTCCCAGACAGGTCTTATACTGACTTTCATACATCGAG
1 GTCGATGCCATGTCCCAGACAGGTCTTACACTGGCTATCATACATCAAG
* * * * * *
47745696 GCCGATGCCGTGTCCTAGACCGGTCTTACACTGGCTCTCAT-CTAT-TAG
1 GTCGATGCCATGTCCCAGACAGGTCTTACACTGGCTATCATAC-ATCAAG
* ** *
47745744 TGTCGATGCCATGCCCCAGACAGGTCTTACAC-AAC-A-C-T-CAACAA-
1 -GTCGATGCCATGTCCCAGACAGGTCTTACACTGGCTATCATACATCAAG
* * * * *
47745788 GTTGATGCCATGTCCTAGACAGGTCTTACACTAGCT-TGTATATC-TCTAG
1 GTCGATGCCATGTCCCAGACAGGTCTTACACTGGCTAT-CATA-CATCAAG
* * * **
47745837 G-CTGATG-CATGTCCTAGACATGTCTTACACTGGCTCTCATA-AT-GTG
1 GTC-GATGCCATGTCCCAGACAGGTCTTACACTGGCTATCATACATCAAG
* * * * * **
47745883 GCCGATG-CATGTCCTAGACATGTCTTACACTGACTCTCATA-AT-GTG
1 GTCGATGCCATGTCCCAGACAGGTCTTACACTGGCTATCATACATCAAG
* *
47745929 GTTGATG-CATGTCCCAGACATGTCTTACA
1 GTCGATGCCATGTCCCAGACAGGTCTTACA
47745958 TTAGCACACA
Statistics
Matches: 251, Mismatches: 43, Indels: 36
0.76 0.13 0.11
Matches are distributed among these distances:
43 28 0.11
44 3 0.01
45 3 0.01
46 71 0.28
47 17 0.07
48 55 0.22
49 74 0.29
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (49 bp):
GTCGATGCCATGTCCCAGACAGGTCTTACACTGGCTATCATACATCAAG
Found at i:47745904 original size:46 final size:46
Alignment explanation
Indices: 47745790--47745957 Score: 212
Period size: 46 Copynumber: 3.6 Consensus size: 46
47745780 CTCAACAAGT
* * * * *
47745790 TGATGCCATGTCCTAGACAGGTCTTACACTAGCT-TGTATATCTCTAGGC
1 TGATG-CATGTCCTAGACATGTCTTACACTGGCTCT-CATA-ATGT-GGC
47745839 TGATGCATGTCCTAGACATGTCTTACACTGGCTCTCATAATGTGGC
1 TGATGCATGTCCTAGACATGTCTTACACTGGCTCTCATAATGTGGC
* * *
47745885 CGATGCATGTCCTAGACATGTCTTACACTGACTCTCATAATGTGGT
1 TGATGCATGTCCTAGACATGTCTTACACTGGCTCTCATAATGTGGC
*
47745931 TGATGCATGTCCCAGACATGTCTTACA
1 TGATGCATGTCCTAGACATGTCTTACA
47745958 TTAGCACACA
Statistics
Matches: 108, Mismatches: 10, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
46 71 0.66
47 2 0.02
48 29 0.27
49 6 0.06
ACGTcount: A:0.23, C:0.24, G:0.20, T:0.32
Consensus pattern (46 bp):
TGATGCATGTCCTAGACATGTCTTACACTGGCTCTCATAATGTGGC
Found at i:47752738 original size:15 final size:17
Alignment explanation
Indices: 47752718--47752749 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
47752708 TAAAATACTT
47752718 GTGTTTC-T-CATCAAG
1 GTGTTTCATGCATCAAG
47752733 GTGTTTCATGCATCAAG
1 GTGTTTCATGCATCAAG
47752750 ATTTTTATAC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 1 0.07
17 7 0.47
ACGTcount: A:0.22, C:0.19, G:0.22, T:0.38
Consensus pattern (17 bp):
GTGTTTCATGCATCAAG
Found at i:47760667 original size:46 final size:48
Alignment explanation
Indices: 47760572--47760745 Score: 168
Period size: 46 Copynumber: 3.8 Consensus size: 48
47760562 GGGAGCAGGT
* * * *
47760572 GCCGATGCCATGTCCCAGACATGGTCTTACACTGAC--ACATCTAGTA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACGTCTCGAA
47760618 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACGTCTCGAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACGTCTCGAA
* * * *
47760664 GCCGGTG-CATGTCCTAGACAT-GTCTTACACTAGCACT-CGTCTC-AA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGC-TTACGTCTCGAA
** *
47760709 GGTTGATGCCATAT-CCAGACATGGTCTTACACTGGCT
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCT
47760746 CTCATAATGT
Statistics
Matches: 107, Mismatches: 15, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
44 12 0.11
45 16 0.15
46 62 0.58
47 17 0.16
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.26
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACGTCTCGAA
Found at i:47767049 original size:17 final size:17
Alignment explanation
Indices: 47767027--47767060 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
47767017 AGACCGTGTG
47767027 TCACACACGGCATAGAC
1 TCACACACGGCATAGAC
47767044 TCACACACGGCATAGAC
1 TCACACACGGCATAGAC
47767061 ACACGCCCGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.35, G:0.18, T:0.12
Consensus pattern (17 bp):
TCACACACGGCATAGAC
Found at i:47767063 original size:15 final size:16
Alignment explanation
Indices: 47767028--47767064 Score: 58
Period size: 17 Copynumber: 2.3 Consensus size: 16
47767018 GACCGTGTGT
47767028 CACACACGGCATAGAC
1 CACACACGGCATAGAC
47767044 TCACACACGGCATAGA-
1 -CACACACGGCATAGAC
47767060 CACAC
1 CACAC
47767065 GCCCGTGTGT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 5 0.25
17 15 0.75
ACGTcount: A:0.38, C:0.38, G:0.16, T:0.08
Consensus pattern (16 bp):
CACACACGGCATAGAC
Found at i:47767959 original size:94 final size:92
Alignment explanation
Indices: 47767794--47767963 Score: 234
Period size: 94 Copynumber: 1.8 Consensus size: 92
47767784 GCAGGTGTCG
* * * *
47767794 ATGCCATGTCCCAGACATGGTCTTACACTGACACATCTCGTAGCCGATGCATGTCCTAGACATGT
1 ATGCCATATCCCAAACATGGTCTTACACTGACACATCTCGTAGCCGATACATGTCCCAGACATGT
47767859 CTTACACTAGCACTCGTCTCAATACCA
66 CTTACACTAGCACTCGTCTCAATACCA
* * * *
47767886 ATGCCATATCCCAAACATGGTCTTACACTGGCTC-TCATAATGTGGCCGATACATGTCCCAGACA
1 ATGCCATATCCCAAACATGGTCTTACACTGACACATC-T--CGTAGCCGATACATGTCCCAGACA
47767950 TGTCTTACACTAGC
63 TGTCTTACACTAGC
47767964 TCACGCAAGT
Statistics
Matches: 67, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
91 2 0.03
92 31 0.46
94 34 0.51
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.26
Consensus pattern (92 bp):
ATGCCATATCCCAAACATGGTCTTACACTGACACATCTCGTAGCCGATACATGTCCCAGACATGT
CTTACACTAGCACTCGTCTCAATACCA
Found at i:47780698 original size:13 final size:13
Alignment explanation
Indices: 47780673--47780704 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
47780663 ATAACACATC
47780673 TCAAAAC-ATGCA
1 TCAAAACTATGCA
47780685 TCAAAACTATGCA
1 TCAAAACTATGCA
47780698 T-AAAACT
1 TCAAAACT
47780705 TAACATTTGC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 13 0.68
13 6 0.32
ACGTcount: A:0.50, C:0.22, G:0.06, T:0.22
Consensus pattern (13 bp):
TCAAAACTATGCA
Found at i:47781303 original size:44 final size:42
Alignment explanation
Indices: 47781164--47781314 Score: 126
Period size: 43 Copynumber: 3.5 Consensus size: 42
47781154 CAATGCCGAC
* * * * *
47781164 GTCCTAGACATGGTGTTACATGTAACTCAATATCGATGCCTCT
1 GTCCCAGACATGGTCTTACACGTAAATCAA-ATCGATGCCTGT
* * * * *
47781207 GTCCCAGACAGGGTCTTTATACG-AAAACAGATAGGATG-CTGAT
1 GTCCCAGACATGGTC-TTACACGTAAATCAAAT-CGATGCCTG-T
*
47781250 GTCCTAGACATGGTCTTACACGTAAATTTCAAATCGATGCCTGT
1 GTCCCAGACATGGTCTTACACGTAAA--TCAAATCGATGCCTGT
*
47781294 GTCCCAGACACGGTCTTACAC
1 GTCCCAGACATGGTCTTACAC
47781315 AATAATTCAA
Statistics
Matches: 83, Mismatches: 18, Indels: 13
0.73 0.16 0.11
Matches are distributed among these distances:
42 10 0.12
43 37 0.45
44 29 0.35
45 7 0.08
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.28
Consensus pattern (42 bp):
GTCCCAGACATGGTCTTACACGTAAATCAAATCGATGCCTGT
Found at i:47796651 original size:30 final size:30
Alignment explanation
Indices: 47796615--47796675 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
47796605 TCCTTAACTC
47796615 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
47796645 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
47796675 A
1 A
47796676 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:47803091 original size:23 final size:23
Alignment explanation
Indices: 47803065--47803112 Score: 87
Period size: 23 Copynumber: 2.1 Consensus size: 23
47803055 TAATAGTATA
*
47803065 TATGTTAATTTTAAAGTTATAAT
1 TATGTAAATTTTAAAGTTATAAT
47803088 TATGTAAATTTTAAAGTTATAAT
1 TATGTAAATTTTAAAGTTATAAT
47803111 TA
1 TA
47803113 AGTGAAAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.42, C:0.00, G:0.08, T:0.50
Consensus pattern (23 bp):
TATGTAAATTTTAAAGTTATAAT
Found at i:47815387 original size:27 final size:27
Alignment explanation
Indices: 47815349--47815423 Score: 89
Period size: 27 Copynumber: 2.8 Consensus size: 27
47815339 AGCGTTCTGA
* *
47815349 TGGCTATGCCACAAATATCTG-CTCTAG
1 TGGCTCTGCCAC-AATATCTGTATCTAG
*
47815376 TGGCTCTGCCACAATATCTGTATCTGG
1 TGGCTCTGCCACAATATCTGTATCTAG
* *
47815403 TGACTCTGTCACAATATCTGT
1 TGGCTCTGCCACAATATCTGT
47815424 TCTGGCAGCA
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
26 8 0.19
27 34 0.81
ACGTcount: A:0.23, C:0.25, G:0.19, T:0.33
Consensus pattern (27 bp):
TGGCTCTGCCACAATATCTGTATCTAG
Found at i:47822772 original size:27 final size:26
Alignment explanation
Indices: 47822741--47822918 Score: 169
Period size: 27 Copynumber: 6.6 Consensus size: 26
47822731 TAAATTGTAC
47822741 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * *
47822768 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* *
47822794 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
*
47822822 GGCACTAAGTGTGCGAGTCTGACTATGT
1 AGCACTAAGTGTGCGA-T-TGACTATGT
* *
47822850 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* * *
47822877 GGCACTAAGTGTGCGAGTTGAATATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
47822904 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
47822919 GGCTCAATAT
Statistics
Matches: 125, Mismatches: 21, Indels: 10
0.80 0.13 0.06
Matches are distributed among these distances:
26 1 0.01
27 99 0.79
28 25 0.20
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.28
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:47822857 original size:82 final size:81
Alignment explanation
Indices: 47822742--47822897 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
47822732 AAATTGTACA
* * *
47822742 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
47822806 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
47822823 GCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
47822888 TGCGAGTTGA
65 TGCGAATTGA
47822898 ATATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 18 0.27
82 48 0.73
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:47822909 original size:82 final size:81
Alignment explanation
Indices: 47822738--47822918 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
47822728 GATTAAATTG
* * *
47822738 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
*
47822803 GTGTGCGAATTGACCA
66 GTGTGCGAATTGAACA
* * ** *
47822819 TGCGGCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACT
1 TACAGCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* *
47822883 AAGTGTGCGAGTTGAATA
64 AAGTGTGCGAATTGAACA
* *
47822901 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
47822919 GGCTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 20 0.24
82 63 0.76
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGAACA
Found at i:47822927 original size:27 final size:27
Alignment explanation
Indices: 47822823--47822929 Score: 79
Period size: 27 Copynumber: 3.9 Consensus size: 27
47822813 TGACCATGCG
* * *
47822823 GCACTAAGTGTGCGAGTCTGACTATGTA
1 GCACTAAGTGTGCGAG-CTCAATATATA
** * * ** *
47822851 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
47822878 GCACTAAGTGTGCGAGTTGAATATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
47822905 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
47822930 CATTCGTGAA
Statistics
Matches: 65, Mismatches: 14, Indels: 1
0.81 0.17 0.01
Matches are distributed among these distances:
27 50 0.77
28 15 0.23
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:47830917 original size:27 final size:26
Alignment explanation
Indices: 47830886--47831062 Score: 151
Period size: 27 Copynumber: 6.6 Consensus size: 26
47830876 TAAATTGTAC
*
47830886 AGCACTAAGTGTGCGATTCGATTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* ** *
47830913 TGCACTAAGTGTGCGAAAAGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* *
47830939 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
*
47830967 GGCACTAAGTGTGCGAGTCTGACTATGT
1 AGCACTAAGTGTGCGA-T-TGACTATGT
* *
47830995 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* *
47831022 GGCACTAAGTGTGCGAGTTGA-TATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
47831048 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
47831063 GGCTCAATAT
Statistics
Matches: 123, Mismatches: 22, Indels: 11
0.79 0.14 0.07
Matches are distributed among these distances:
26 17 0.14
27 82 0.67
28 24 0.20
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.28
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:47831010 original size:55 final size:53
Alignment explanation
Indices: 47830914--47831062 Score: 165
Period size: 55 Copynumber: 2.8 Consensus size: 53
47830904 CGATTATGTT
*** *
47830914 GCACTAAGTGTGCGAAAAGA-ATATGATGCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAGTTGATATAT-A-GCACTAAGTGTGCGAATTGACCACGCG
* * ** *
47830968 GCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAGT-TGA-TATATAGCACTAAGTGTGCGAATTGACCACGCG
*
47831023 GCACTAAGTGTGCGAGTTGATATATAGCACTGAGTGTGCG
1 GCACTAAGTGTGCGAGTTGATATATAGCACTAAGTGTGCG
47831063 GGCTCAATAT
Statistics
Matches: 81, Mismatches: 11, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
53 18 0.22
54 18 0.22
55 41 0.51
56 1 0.01
57 3 0.04
ACGTcount: A:0.28, C:0.16, G:0.30, T:0.27
Consensus pattern (53 bp):
GCACTAAGTGTGCGAGTTGATATATAGCACTAAGTGTGCGAATTGACCACGCG
Found at i:47831027 original size:82 final size:81
Alignment explanation
Indices: 47830887--47831042 Score: 206
Period size: 82 Copynumber: 1.9 Consensus size: 81
47830877 AAATTGTACA
* * * *
47830887 GCACTAAGTGTGCGATTCGATTATGTTGCACTAAGTGTGCGAAAAGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAAAGAATACGATGCACTAAGTGT
47830952 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
*** *
47830968 GCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACTAAGT
1 GCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAAAGAATACGAT-GCACTAAGT
*
47831032 GTGCGAGTTGA
64 GTGCGAATTGA
47831043 TATATAGCAC
Statistics
Matches: 64, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
81 18 0.28
82 46 0.72
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAAAGAATACGATGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:47832553 original size:40 final size:40
Alignment explanation
Indices: 47832490--47832648 Score: 232
Period size: 40 Copynumber: 4.0 Consensus size: 40
47832480 TGCTAATTCT
47832490 GGCTAAGTCCCG--GGCATTTGTGCGAGTTACTATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
47832528 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
* * **
47832568 GGCTAAGTCCCAAAGACATTTGTGCGAACTACTATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
* * **
47832608 GGCTAAGTCCCGAAGGCATTTGAGCAAGTGGCTATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
47832648 G
1 G
47832649 TTAAAGCCCG
Statistics
Matches: 107, Mismatches: 12, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
38 12 0.11
40 95 0.89
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
Found at i:47841117 original size:40 final size:40
Alignment explanation
Indices: 47841047--47841257 Score: 207
Period size: 40 Copynumber: 5.1 Consensus size: 40
47841037 CGGGATTTAA
47841047 CCGGATATAGCT-ACTCGCT-C-AATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCG-TACAAATGCCTTCGGGACATAGC
* * *
47841086 CCCGATATAGTAACTCGTACCAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGTACAAATGCCTTCGGGACATAGC
*
47841126 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTGGGACTTAGC
1 CCGGATATAGTAACTCGTACAAATGCCTTCGGGAC-----A--TAGC
*
47841173 CCGGATATAGTAACTCGTACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGTACAAATGCCTTCGGGACATAGC
* * *
47841213 CCGGA-ACTAGTCACTAGCGCA-AAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACT--CGTACAAATGCCTTCGGGACATAGC
47841254 CCGG
1 CCGG
47841258 TTATCATCCA
Statistics
Matches: 149, Mismatches: 10, Indels: 24
0.81 0.05 0.13
Matches are distributed among these distances:
38 2 0.01
39 16 0.11
40 66 0.44
41 24 0.16
42 3 0.02
47 38 0.26
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
CCGGATATAGTAACTCGTACAAATGCCTTCGGGACATAGC
Found at i:47841185 original size:47 final size:47
Alignment explanation
Indices: 47841116--47841209 Score: 179
Period size: 47 Copynumber: 2.0 Consensus size: 47
47841106 CAATGCCTTC
47841116 GGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTT
1 GGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTT
*
47841163 GGGACTTAGCCCGGATATAGTAACTCGTACAAATGCCTTCGGGACTT
1 GGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTT
47841210 AGCCCGGAAC
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (47 bp):
GGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTT
Found at i:47841248 original size:41 final size:40
Alignment explanation
Indices: 47841163--47841257 Score: 131
Period size: 41 Copynumber: 2.4 Consensus size: 40
47841153 TTCGGGACTT
*
47841163 GGGACTTAGCCCGGATATAGTAACTCGTACAAATGCCTTC
1 GGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTC
*
47841203 GGGACTTAGCCCGGA-ACTAGTCACTAGCGCA-AAATGCCTTC
1 GGGACTTAGCCCGGATA-TAGTAACT--CGCACAAATGCCTTC
47841244 GGGACTTAGCCCGG
1 GGGACTTAGCCCGG
47841258 TTATCATCCA
Statistics
Matches: 50, Mismatches: 2, Indels: 5
0.88 0.04 0.09
Matches are distributed among these distances:
39 1 0.02
40 22 0.44
41 24 0.48
42 3 0.06
ACGTcount: A:0.25, C:0.27, G:0.26, T:0.21
Consensus pattern (40 bp):
GGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTC
Found at i:47843869 original size:40 final size:40
Alignment explanation
Indices: 47843818--47844062 Score: 318
Period size: 40 Copynumber: 6.1 Consensus size: 40
47843808 GGATGATAAT
*
47843818 TCCGGGCTAAGTCCTGAAGGCATTTGTGCTAGTGACTA-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATA
*
47843857 TTTCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-A
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATA
* * *
47843897 TTCTGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATA
*
47843938 TCCGGGCTAAGTCCCGAAGGCATTTGTG-TGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGTGACTATA
* * *
47843978 TCCGGGCTAAGTCCCGAAGACATTTGTGCGAACT-ACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-TAGTGACTATA
* * *
47844018 TCCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTGGCTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATA
47844058 TCCGG
1 TCCGG
47844063 TTAAAGCCCG
Statistics
Matches: 184, Mismatches: 16, Indels: 10
0.88 0.08 0.05
Matches are distributed among these distances:
39 2 0.01
40 179 0.97
41 3 0.02
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATA
Found at i:47849453 original size:27 final size:26
Alignment explanation
Indices: 47849394--47849495 Score: 134
Period size: 27 Copynumber: 3.8 Consensus size: 26
47849384 CTGATAGCTA
47849394 TGCCACAAATATCTGTTTCTGGTGGCTAC
1 TGCCAC-AATATCTG-TTCTGGTGGCT-C
47849423 -GCCACAAATATCTGTTCTGGTGGCTC
1 TGCCAC-AATATCTGTTCTGGTGGCTC
*
47849449 TGCCACAATATCTGTATCTGGTGACTC
1 TGCCACAATATCTGT-TCTGGTGGCTC
*
47849476 TGTCACAATATCTGTTCTGG
1 TGCCACAATATCTGTTCTGG
47849496 CAGCCATGCT
Statistics
Matches: 69, Mismatches: 2, Indels: 7
0.88 0.03 0.09
Matches are distributed among these distances:
26 15 0.22
27 40 0.58
28 14 0.20
ACGTcount: A:0.21, C:0.25, G:0.21, T:0.34
Consensus pattern (26 bp):
TGCCACAATATCTGTTCTGGTGGCTC
Found at i:47850845 original size:34 final size:34
Alignment explanation
Indices: 47850802--47850870 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
47850792 GTTTCTATGT
*
47850802 AGGCTATTATGATTTATATACATGAGTTAAGTTG
1 AGGCTATTATGATATATATACATGAGTTAAGTTG
47850836 AGGCTATTATGATATATATACATGAGTTAAGTTG
1 AGGCTATTATGATATATATACATGAGTTAAGTTG
47850870 A
1 A
47850871 TTACAAGTGA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.35, C:0.06, G:0.20, T:0.39
Consensus pattern (34 bp):
AGGCTATTATGATATATATACATGAGTTAAGTTG
Found at i:47852334 original size:34 final size:34
Alignment explanation
Indices: 47852291--47852360 Score: 122
Period size: 34 Copynumber: 2.1 Consensus size: 34
47852281 GTTTTTATGT
47852291 AGGCTATTATAATATACATACATGAGTTAAGTTG
1 AGGCTATTATAATATACATACATGAGTTAAGTTG
* *
47852325 AGGCTATTATGATATATATACATGAGTTAAGTTG
1 AGGCTATTATAATATACATACATGAGTTAAGTTG
47852359 AG
1 AG
47852361 TACATGTGAT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.37, C:0.07, G:0.20, T:0.36
Consensus pattern (34 bp):
AGGCTATTATAATATACATACATGAGTTAAGTTG
Found at i:47854402 original size:42 final size:42
Alignment explanation
Indices: 47854355--47854439 Score: 100
Period size: 42 Copynumber: 2.0 Consensus size: 42
47854345 TGACATTAGG
* * * *
47854355 GTTATGAG-TTTACGTGTTAGACCATATCTAGGATATGGCATC
1 GTTATGAGATTT-CCTGTAAGAACATATCTAGGACATGGCATC
* *
47854397 GTTATGAGATTTCCTGTAAGAACATGTCTGGGACATGGCATC
1 GTTATGAGATTTCCTGTAAGAACATATCTAGGACATGGCATC
47854439 G
1 G
47854440 ACATGAGAAT
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
42 33 0.92
43 3 0.08
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.33
Consensus pattern (42 bp):
GTTATGAGATTTCCTGTAAGAACATATCTAGGACATGGCATC
Found at i:47861645 original size:40 final size:40
Alignment explanation
Indices: 47861562--47861824 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
47861552 TTGAATGCTG
* * * * * *
47861562 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
47861602 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
47861642 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
47861682 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* *
47861722 TCCGGGTTAAGTCCCGAAGGCAGTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
47861762 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
47861801 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
47861825 TGAACGAGGA
Statistics
Matches: 199, Mismatches: 21, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 35 0.18
40 156 0.78
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:47861844 original size:79 final size:80
Alignment explanation
Indices: 47861601--47861859 Score: 238
Period size: 80 Copynumber: 3.3 Consensus size: 80
47861591 AAGTGAATAT
* * * * * * *
47861601 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAG
** * *
47861665 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
47861681 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCAGT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
** ** *
47861746 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * * *
47861761 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
* *
47861825 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
47861840 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
47861860 TACGTGATTT
Statistics
Matches: 154, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
78 14 0.09
79 47 0.31
80 93 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.25
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
CGAACGAGGAGCTAA
Found at i:47869175 original size:40 final size:40
Alignment explanation
Indices: 47869092--47869354 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
47869082 TTGAATGCTG
* * * * * *
47869092 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
47869132 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
47869172 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
47869212 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* *
47869252 TCCGGGTTAAGTCCCGAAGGCAGTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
47869292 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
47869331 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
47869355 TGAACGAGGA
Statistics
Matches: 199, Mismatches: 21, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 35 0.18
40 156 0.78
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:47869374 original size:79 final size:80
Alignment explanation
Indices: 47869131--47869389 Score: 238
Period size: 80 Copynumber: 3.3 Consensus size: 80
47869121 AAGTGAATAT
* * * * * * *
47869131 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAG
** * *
47869195 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
47869211 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCAGT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
** ** *
47869276 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * * *
47869291 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
* *
47869355 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
47869370 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
47869390 TACGTGATTT
Statistics
Matches: 154, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
78 14 0.09
79 47 0.31
80 93 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.25
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
CGAACGAGGAGCTAA
Found at i:47870994 original size:39 final size:39
Alignment explanation
Indices: 47870832--47870980 Score: 262
Period size: 39 Copynumber: 3.8 Consensus size: 39
47870822 ATTTGATGTG
*
47870832 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
*
47870871 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
47870910 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
* *
47870949 TATCCGGACTTAAGGTTCGCAGGCTACGTGCT
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCT
47870981 AAAAATATGT
Statistics
Matches: 107, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 107 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (39 bp):
TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
Found at i:47870994 original size:78 final size:78
Alignment explanation
Indices: 47870832--47871029 Score: 256
Period size: 78 Copynumber: 2.6 Consensus size: 78
47870822 ATTTGATGTG
* *
47870832 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTATATCCGGACTTAGGGTCCGCAGGCTA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTATATCCGGACTTAAGGTCCGCAGGCTA
* ** *
47870897 TGTGCTGGAATTA
66 CGTGCTAAAAATA
*
47870910 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTATATCCGGACTTAAGGTTCGCAGGCTA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTATATCCGGACTTAAGGTCCGCAGGCTA
47870975 CGTGCTAAAAATA
66 CGTGCTAAAAATA
* * * * * *
47870988 TGTCCGGGC-TAAAGCCCGCAGGCT-TCGAGCTGGTATTATATC
1 TATCCGGACTTAAGGTCCGCAGGCTAT-GTGCTGGAATTATATC
47871030 GGGTTTAAAT
Statistics
Matches: 106, Mismatches: 13, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
76 1 0.01
77 27 0.25
78 78 0.74
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (78 bp):
TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTATATCCGGACTTAAGGTCCGCAGGCTA
CGTGCTAAAAATA
Found at i:47879632 original size:44 final size:44
Alignment explanation
Indices: 47879576--47879678 Score: 136
Period size: 44 Copynumber: 2.3 Consensus size: 44
47879566 GGCTATATGA
* * * *
47879576 GGCACTAAGTGTGCGATACCGATT-TAGCTTCGGTTAATTGAGAT
1 GGCACTAAGTGTGCGA-AACAATTCTACCTTCGATTAATTGAGAT
*
47879620 GGCACTAAGTGTGCGAAATAATTCTACCTTCGATTAATTGAGAT
1 GGCACTAAGTGTGCGAAACAATTCTACCTTCGATTAATTGAGAT
*
47879664 GGAACTAAGTGTGCG
1 GGCACTAAGTGTGCG
47879679 GAATCGTTCT
Statistics
Matches: 52, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
43 4 0.08
44 48 0.92
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (44 bp):
GGCACTAAGTGTGCGAAACAATTCTACCTTCGATTAATTGAGAT
Found at i:47882767 original size:28 final size:28
Alignment explanation
Indices: 47882735--47882804 Score: 99
Period size: 28 Copynumber: 2.5 Consensus size: 28
47882725 AATGAGATTG
47882735 GCACTAAGTGTGCGAGTTT-AAT-TGTATA
1 GCACTAAGTGTGCGAGTTTGAATAT-TA-A
*
47882763 GCACTAAGTGTGCGAGTTTGACTATTAA
1 GCACTAAGTGTGCGAGTTTGAATATTAA
47882791 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
47882805 GACTTACTAT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
28 34 0.87
29 4 0.10
30 1 0.03
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.31
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGAATATTAA
Found at i:47892105 original size:37 final size:37
Alignment explanation
Indices: 47892055--47892206 Score: 241
Period size: 37 Copynumber: 4.1 Consensus size: 37
47892045 ACCTTTAGCT
* * *
47892055 CGGACGAAATCTCCACACGAAGTTATCGGGTCTTACC
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
*
47892092 CGGACAAAATCTCCACACGTAGTCATTGGGTCTTACC
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
47892129 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
* * *
47892166 CGGACATACTCTCCACACGTAGTCATCGGGTCTCACC
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
47892203 CGGA
1 CGGA
47892207 ATATATTTCC
Statistics
Matches: 107, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 107 1.00
ACGTcount: A:0.26, C:0.32, G:0.20, T:0.22
Consensus pattern (37 bp):
CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
Found at i:47892421 original size:47 final size:47
Alignment explanation
Indices: 47892369--47892746 Score: 499
Period size: 47 Copynumber: 8.0 Consensus size: 47
47892359 TTTCACACTA
* * * * *
47892369 GCCATTCGGCTTTACCACATATATGCATGTTCATATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
*
47892416 GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
*
47892463 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATATAT
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACAT-T-G
* * * *
47892512 G-CATGTTC-ACATTCATCACATATATGCATGTTCACATTCATCACATAG
1 GCCA--TTCGGCCTT-ATCACATATATGCATGCTCACATTCATCACATTG
* * * *
47892560 GCCATTCAGCCTTATCACATATATGCATGTTCATATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
* *
47892607 GCCATTCGACCTTATCACACATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
* * * *
47892654 GCCATTCGGCCTTATCACATATATACATGTTCATATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
*
47892701 GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATT
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATT
47892747 AAATCCTAAA
Statistics
Matches: 289, Mismatches: 35, Indels: 14
0.86 0.10 0.04
Matches are distributed among these distances:
47 242 0.84
48 7 0.02
49 6 0.02
50 34 0.12
ACGTcount: A:0.28, C:0.29, G:0.11, T:0.32
Consensus pattern (47 bp):
GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
Found at i:47892457 original size:25 final size:24
Alignment explanation
Indices: 47892429--47892650 Score: 130
Period size: 25 Copynumber: 9.2 Consensus size: 24
47892419 ATTCGGCCTT
47892429 ATCACACATATGCATGCTCACATTC
1 ATCACACATATGCATG-TCACATTC
* *
47892454 AT--CACAT-TGGCCAT-TCGGCCTT-
1 ATCACACATAT-G-CATGTC-ACATTC
*
47892476 ATCACATATATGCATGCTCACATTC
1 ATCACACATATGCATG-TCACATTC
*
47892501 ATCACATATATGCATGTTCACATTC
1 ATCACACATATGCATG-TCACATTC
*
47892526 ATCACATATATGCATGTTCACATTC
1 ATCACACATATGCATG-TCACATTC
* *
47892551 AT--CACATAGGCCAT-TCAGCCTT-
1 ATCACACATATG-CATGTCA-CATTC
* *
47892573 ATCACATATATGCATGTTCATATTC
1 ATCACACATATGCATG-TCACATTC
*
47892598 A-C-CACAT-TGGCCAT-TCGACCTT-
1 ATCACACATAT-G-CATGTC-ACATTC
47892620 ATCACACATATGCATGCTCACATTC
1 ATCACACATATGCATG-TCACATTC
47892645 ATCACA
1 ATCACA
47892651 TTGGCCATTC
Statistics
Matches: 155, Mismatches: 17, Indels: 50
0.70 0.08 0.23
Matches are distributed among these distances:
22 14 0.09
23 36 0.23
24 36 0.23
25 69 0.45
ACGTcount: A:0.30, C:0.29, G:0.10, T:0.32
Consensus pattern (24 bp):
ATCACACATATGCATGTCACATTC
Found at i:47892482 original size:94 final size:94
Alignment explanation
Indices: 47892369--47892746 Score: 571
Period size: 94 Copynumber: 4.0 Consensus size: 94
47892359 TTTCACACTA
* * *
47892369 GCCATTCGGCTTTACCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGCCTTATCAC
1 GCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTGGCCATTCGACCTTATCAC
47892434 ACATATGCATGCTCACATTCATCACATTG
66 ACATATGCATGCTCACATTCATCACATTG
* * * * *
47892463 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATATATG-CATGTTC-ACATTC
1 GCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACAT-T-GGCCA--TTCGACCTT-
* * *
47892526 ATCACATATATGCATGTTCACATTCATCACATAG
61 ATCACACATATGCATGCTCACATTCATCACATTG
*
47892560 GCCATTCAGCCTTATCACATATATGCATGTTCATATTCACCACATTGGCCATTCGACCTTATCAC
1 GCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTGGCCATTCGACCTTATCAC
47892625 ACATATGCATGCTCACATTCATCACATTG
66 ACATATGCATGCTCACATTCATCACATTG
* *
47892654 GCCATTCGGCCTTATCACATATATACATGTTCATATTCACCACATTGGCCATTCGGCCTTATCAC
1 GCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTGGCCATTCGACCTTATCAC
47892719 ACATATGCATGCTCACATTCATCACATT
66 ACATATGCATGCTCACATTCATCACATT
47892747 AAATCCTAAA
Statistics
Matches: 254, Mismatches: 23, Indels: 14
0.87 0.08 0.05
Matches are distributed among these distances:
94 164 0.65
95 8 0.03
96 7 0.03
97 75 0.30
ACGTcount: A:0.28, C:0.29, G:0.11, T:0.32
Consensus pattern (94 bp):
GCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTGGCCATTCGACCTTATCAC
ACATATGCATGCTCACATTCATCACATTG
Found at i:47898890 original size:29 final size:28
Alignment explanation
Indices: 47898847--47898956 Score: 112
Period size: 29 Copynumber: 3.9 Consensus size: 28
47898837 CATGAGTATG
* *
47898847 AATGTGACTGGGCCTAACGGGCCATATA
1 AATGTGATTGGGCCTAATGGGCCATATA
*
47898875 AATGTGATTTGGGCCTAATGGGTCATATA
1 AATGTGA-TTGGGCCTAATGGGCCATATA
* * * *
47898904 CAGGTAGTTTGGGCCTAATGGGCCATATG
1 AATGT-GATTGGGCCTAATGGGCCATATA
* * *
47898933 AATATGATTGGGCTTCATGGGCCA
1 AATGTGATTGGGCCTAATGGGCCA
47898957 GATACAAGTA
Statistics
Matches: 66, Mismatches: 14, Indels: 4
0.79 0.17 0.05
Matches are distributed among these distances:
28 23 0.35
29 42 0.64
30 1 0.02
ACGTcount: A:0.25, C:0.16, G:0.30, T:0.28
Consensus pattern (28 bp):
AATGTGATTGGGCCTAATGGGCCATATA
Found at i:47907296 original size:29 final size:29
Alignment explanation
Indices: 47907261--47907344 Score: 96
Period size: 29 Copynumber: 2.9 Consensus size: 29
47907251 ATGTGACTGG
47907261 GCCTAACGGGCCATATAAATGTGATTTGA
1 GCCTAACGGGCCATATAAATGTGATTTGA
* * * *
47907290 GCCTAACGGGCCATATACAGGTGGTTTGG
1 GCCTAACGGGCCATATAAATGTGATTTGA
* * * *
47907319 GCCTAATGGGTCATATGAATATGATT
1 GCCTAACGGGCCATATAAATGTGATT
47907345 GGGCTTAATG
Statistics
Matches: 44, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
29 44 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (29 bp):
GCCTAACGGGCCATATAAATGTGATTTGA
Found at i:47907334 original size:58 final size:57
Alignment explanation
Indices: 47907258--47907368 Score: 141
Period size: 58 Copynumber: 1.9 Consensus size: 57
47907248 TGAATGTGAC
* *
47907258 TGGGCCTAACGGGCCATATAAATGTGATTTGAGCCTAACGGGCCATATACAGGTGGTT
1 TGGGCCTAACGGGCCATATAAATATGA-TTGAGCCTAACGGGCCAGATACAGGTGGTT
* * * * * *
47907316 TGGGCCTAATGGGTCATATGAATATGATTGGGCTTAATGGGCCAGATACAGGT
1 TGGGCCTAACGGGCCATATAAATATGATTGAGCCTAACGGGCCAGATACAGGT
47907369 ATGTGAATTT
Statistics
Matches: 45, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
57 22 0.49
58 23 0.51
ACGTcount: A:0.26, C:0.16, G:0.31, T:0.27
Consensus pattern (57 bp):
TGGGCCTAACGGGCCATATAAATATGATTGAGCCTAACGGGCCAGATACAGGTGGTT
Found at i:47909569 original size:42 final size:42
Alignment explanation
Indices: 47909498--47909623 Score: 182
Period size: 42 Copynumber: 3.0 Consensus size: 42
47909488 TTGGGATGTT
*
47909498 GGCATCG-ATTTGGGATTTACGTGTAAGACCATGTCTAAGACATC
1 GGCATCGTATTT--GATTT-CGTGTAAGACCATGTCTGAGACATC
47909542 GGCATCGTATTTGATTTCGTGTAAGACCATGTCTGAGACATC
1 GGCATCGTATTTGATTTCGTGTAAGACCATGTCTGAGACATC
** *
47909584 GATATCGTATTTGATTTCGTGTAAGACCCTGTCTGAGACA
1 GGCATCGTATTTGATTTCGTGTAAGACCATGTCTGAGACA
47909624 GTGGCACCAA
Statistics
Matches: 77, Mismatches: 4, Indels: 4
0.91 0.05 0.05
Matches are distributed among these distances:
42 61 0.79
43 5 0.06
44 7 0.09
45 4 0.05
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.33
Consensus pattern (42 bp):
GGCATCGTATTTGATTTCGTGTAAGACCATGTCTGAGACATC
Found at i:47910463 original size:23 final size:22
Alignment explanation
Indices: 47910432--47910474 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
47910422 TGATATGGCA
* *
47910432 TGAATGGTTTATATTTTGGTTG
1 TGAATGGTTTAAAATTTGGTTG
47910454 TGAATTGGTTTAAAATTTGGT
1 TGAA-TGGTTTAAAATTTGGT
47910475 ATAAAATGTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 4 0.22
23 14 0.78
ACGTcount: A:0.23, C:0.00, G:0.26, T:0.51
Consensus pattern (22 bp):
TGAATGGTTTAAAATTTGGTTG
Found at i:47912702 original size:46 final size:46
Alignment explanation
Indices: 47912652--47912827 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
47912642 TGGTTGAGCA
47912652 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
47912698 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
47912743 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
47912791 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
47912828 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 61 0.55
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:47912808 original size:93 final size:93
Alignment explanation
Indices: 47912649--47912820 Score: 310
Period size: 93 Copynumber: 1.8 Consensus size: 93
47912639 GGATGGTTGA
*
47912649 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
47912714 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
47912742 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGAG
47912806 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
47912821 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 2 0.03
93 74 0.97
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:47920258 original size:46 final size:46
Alignment explanation
Indices: 47920208--47920336 Score: 215
Period size: 46 Copynumber: 2.8 Consensus size: 46
47920198 TGGTTGAGCA
47920208 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*
47920254 TCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
47920300 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
47920337 GCGGGTTACA
Statistics
Matches: 78, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
45 2 0.03
46 76 0.97
ACGTcount: A:0.19, C:0.19, G:0.29, T:0.32
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:47923850 original size:28 final size:26
Alignment explanation
Indices: 47923786--47923851 Score: 71
Period size: 28 Copynumber: 2.4 Consensus size: 26
47923776 AGCAATGTTG
47923786 CTAATAACAGTAAACGTGGCAAAGCCA
1 CTAAT-ACAGTAAACGTGGCAAAGCCA
* *
47923813 CCAGA-GCAGTAATTACGTGGCAAAGCCA
1 CTA-ATACAGTAA--ACGTGGCAAAGCCA
47923841 CTAATACAGTA
1 CTAATACAGTA
47923852 CTTCCTCCAA
Statistics
Matches: 31, Mismatches: 4, Indels: 7
0.74 0.10 0.17
Matches are distributed among these distances:
26 6 0.19
27 3 0.10
28 22 0.71
ACGTcount: A:0.41, C:0.23, G:0.20, T:0.17
Consensus pattern (26 bp):
CTAATACAGTAAACGTGGCAAAGCCA
Found at i:47930587 original size:19 final size:19
Alignment explanation
Indices: 47930544--47930587 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 19
47930534 GGGACTAAAT
* *
47930544 TGAAAAGTTGTAAAATTTA
1 TGAAAAATTCTAAAATTTA
*
47930563 TGGAAAAATTCTAAATTTTA
1 T-GAAAAATTCTAAAATTTA
47930583 TGAAA
1 TGAAA
47930588 TACATGGGCT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
19 5 0.24
20 16 0.76
ACGTcount: A:0.48, C:0.02, G:0.14, T:0.36
Consensus pattern (19 bp):
TGAAAAATTCTAAAATTTA
Found at i:47933161 original size:27 final size:26
Alignment explanation
Indices: 47933126--47933237 Score: 125
Period size: 27 Copynumber: 4.2 Consensus size: 26
47933116 AGCATGGCTG
* *
47933126 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
*
47933152 CCAGATACAGATAATCGTGGCGGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
47933180 CCAGAACAGATATATGTGGTAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
47933207 CCAGATCAGATAATTATGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
47933234 CCAG
1 CCAG
47933238 GATGCTTCCT
Statistics
Matches: 73, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
26 6 0.08
27 51 0.70
28 16 0.22
ACGTcount: A:0.37, C:0.22, G:0.24, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Done.