Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 144 of 362
Found at i:47933233 original size:54 final size:54
Alignment explanation
Indices: 47933126--47933237 Score: 145
Period size: 54 Copynumber: 2.1 Consensus size: 54
47933116 AGCATGGCTG
* * *
47933126 CCAGAACAGATAATGTGACAGAGTCACCAGATACAGATAATCGTGGCGGAGCCA
1 CCAGAACAGATAATGTGACAGAGCCACCAGATACAGATAATCATGGCAGAGCCA
** * *
47933180 CCAGAACAGATATATGTGGTAGAGCCACCAGAT-CAGATAATTATGGCATAGCCA
1 CCAGAACAGATA-ATGTGACAGAGCCACCAGATACAGATAATCATGGCAGAGCCA
47933234 CCAG
1 CCAG
47933238 GATGCTTCCT
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
54 33 0.66
55 17 0.34
ACGTcount: A:0.37, C:0.22, G:0.24, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATAATGTGACAGAGCCACCAGATACAGATAATCATGGCAGAGCCA
Found at i:47934695 original size:24 final size:24
Alignment explanation
Indices: 47934668--47934713 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
47934658 CCAACACCGT
* *
47934668 TCTCCCTAATCAGTTCCTAAATCC
1 TCTCCCTAATCAGCTCCCAAATCC
*
47934692 TCTCCCTTATCAGCTCCCAAAT
1 TCTCCCTAATCAGCTCCCAAAT
47934714 ATTCTCCTGA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.24, C:0.39, G:0.04, T:0.33
Consensus pattern (24 bp):
TCTCCCTAATCAGCTCCCAAATCC
Found at i:47934719 original size:24 final size:24
Alignment explanation
Indices: 47934667--47934720 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
47934657 GCCAACACCG
* * *
47934667 TTCTCCCTAATCAGTTCCTAAATC
1 TTCTCCCTAATCAGCTCCCAAATA
* *
47934691 CTCTCCCTTATCAGCTCCCAAATA
1 TTCTCCCTAATCAGCTCCCAAATA
47934715 TTCTCC
1 TTCTCC
47934721 TGACAGCCTT
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.22, C:0.39, G:0.04, T:0.35
Consensus pattern (24 bp):
TTCTCCCTAATCAGCTCCCAAATA
Found at i:47953195 original size:27 final size:27
Alignment explanation
Indices: 47953165--47953281 Score: 153
Period size: 27 Copynumber: 4.3 Consensus size: 27
47953155 TACTGAAATG
* * *
47953165 CCCTCAATTTGTAAAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
*
47953192 CCCTCGATTTACAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* *
47953219 CCCCCGATTTACAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* **
47953246 CCCTTGATTTATAGAATTACTGTTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
47953273 CCCTCGATT
1 CCCTCGATT
47953282 GTGAAATTAC
Statistics
Matches: 79, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 79 1.00
ACGTcount: A:0.28, C:0.25, G:0.08, T:0.39
Consensus pattern (27 bp):
CCCTCGATTTATAGAATTACCATTTTA
Found at i:47953343 original size:27 final size:27
Alignment explanation
Indices: 47953280--47953556 Score: 217
Period size: 27 Copynumber: 10.2 Consensus size: 27
47953270 TTACCCTCGA
* *
47953280 TTGTGAAATTACTAAAATACCCTT-GT
1 TTGTAAAATTACCAAAATACCCTTAGT
** *
47953306 AGGATAGAATTACCAAAATACCCTTAGT
1 TTG-TAAAATTACCAAAATACCCTTAGT
47953334 TTGTAAAATTACCAAAATACTCC-TAGT
1 TTGTAAAATTACCAAAATAC-CCTTAGT
47953361 TTGTAAAATTACCAAAATACCCTTAGT
1 TTGTAAAATTACCAAAATACCCTTAGT
* * *
47953388 TCGTGAAATTACCGAAATACCAC-TAGT
1 TTGTAAAATTACCAAAATACC-CTTAGT
* *
47953415 TTGTGAAATTACCAAAATA-CCTTCAAT
1 TTGTAAAATTACCAAAATACCCTT-AGT
* *
47953442 TTGTAAAATTACCCAAATACCCCT-GAT
1 TTGTAAAATTACCAAAATACCCTTAG-T
** * *
47953469 TTACAAAATTA-TAGAAATACCCTTGACT
1 TTGTAAAATTACCA-AAATACCCTT-AGT
* * * *
47953497 TTTTAAAAATTA-TAGAAATACCATTGGT
1 TTGT-AAAATTACCA-AAATACCCTTAGT
* * *
47953525 TTATAAAATTACTAAAATACCCTTGGT
1 TTGTAAAATTACCAAAATACCCTTAGT
47953552 TTGTA
1 TTGTA
47953557 GATTTACTGA
Statistics
Matches: 205, Mismatches: 32, Indels: 27
0.78 0.12 0.10
Matches are distributed among these distances:
25 1 0.00
26 5 0.02
27 162 0.79
28 18 0.09
29 19 0.09
ACGTcount: A:0.40, C:0.17, G:0.10, T:0.33
Consensus pattern (27 bp):
TTGTAAAATTACCAAAATACCCTTAGT
Found at i:47953509 original size:29 final size:28
Alignment explanation
Indices: 47953468--47953549 Score: 96
Period size: 29 Copynumber: 2.9 Consensus size: 28
47953458 ATACCCCTGA
47953468 TTTACAAAATTATAGAAATACCCTTGACTT
1 TTTA-AAAATTATAGAAATACCCTTG-CTT
* *
47953498 TTTAAAAATTATAGAAATACCATTGGTT
1 TTTAAAAATTATAGAAATACCCTTGCTT
*
47953526 TAT-AAAATTACTA-AAATACCCTTG
1 TTTAAAAATTA-TAGAAATACCCTTG
47953550 GTTTGTAGAT
Statistics
Matches: 47, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
27 17 0.36
28 6 0.13
29 20 0.43
30 4 0.09
ACGTcount: A:0.43, C:0.13, G:0.07, T:0.37
Consensus pattern (28 bp):
TTTAAAAATTATAGAAATACCCTTGCTT
Found at i:47954555 original size:24 final size:25
Alignment explanation
Indices: 47954479--47954540 Score: 106
Period size: 25 Copynumber: 2.5 Consensus size: 25
47954469 AGGAAGTGCT
* *
47954479 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTATCA
47954504 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
47954529 AAAAGGGCTTTG
1 AAAAGGGCTTTG
47954541 TCCTAGTTAT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCA
Found at i:47954754 original size:42 final size:42
Alignment explanation
Indices: 47954695--47954786 Score: 157
Period size: 42 Copynumber: 2.2 Consensus size: 42
47954685 TAGTCTCCCC
* * *
47954695 AAATGGGCTTGCATACATTCATTGGCATTTCATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
47954737 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
47954779 AAATGGGC
1 AAATGGGC
47954787 CTAAGGGCCA
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 47 1.00
ACGTcount: A:0.29, C:0.15, G:0.22, T:0.34
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:47954845 original size:31 final size:31
Alignment explanation
Indices: 47954810--47954924 Score: 187
Period size: 31 Copynumber: 3.7 Consensus size: 31
47954800 CGTTTACAAT
*
47954810 AAAGGCTTCGGCCCAGTGATATGATTAATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* *
47954841 AAAGGCTTCGGCCTAGGGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
47954872 AAAGGCTTCGGCCCAGTGATATGATTTATGG
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
47954903 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
47954925 TCAAGACTAA
Statistics
Matches: 78, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
30 5 0.06
31 73 0.94
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:47957148 original size:18 final size:17
Alignment explanation
Indices: 47957127--47957160 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
47957117 GTAAATAGTC
*
47957127 TAGTAATAATAATCAGTG
1 TAGTAACAATAA-CAGTG
47957145 TAGTAACAATAACAGT
1 TAGTAACAATAACAGT
47957161 ACAGATATGC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.47, C:0.09, G:0.15, T:0.29
Consensus pattern (17 bp):
TAGTAACAATAACAGTG
Found at i:47958276 original size:18 final size:18
Alignment explanation
Indices: 47958255--47958292 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
47958245 GAATGTTAGC
47958255 AGGAATATTACAACATAG
1 AGGAATATTACAACATAG
47958273 AGGAATATTACAACATAG
1 AGGAATATTACAACATAG
47958291 AG
1 AG
47958293 AAAAAGAGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.50, C:0.11, G:0.18, T:0.21
Consensus pattern (18 bp):
AGGAATATTACAACATAG
Found at i:47960836 original size:18 final size:18
Alignment explanation
Indices: 47960786--47960836 Score: 75
Period size: 18 Copynumber: 2.8 Consensus size: 18
47960776 CTTGGCCCAT
*
47960786 TGCAGTAACAATAAACAG
1 TGCAGTAACAATAATCAG
*
47960804 TGCAGTAATAATAATCAG
1 TGCAGTAACAATAATCAG
*
47960822 TGCAGTAACAGTAAT
1 TGCAGTAACAATAAT
47960837 AGTATAGGTA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.45, C:0.14, G:0.18, T:0.24
Consensus pattern (18 bp):
TGCAGTAACAATAATCAG
Found at i:47974154 original size:24 final size:24
Alignment explanation
Indices: 47974125--47974172 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
47974115 AATATGAAAA
47974125 TGAAAGTAAATGGACTTAAAGGGT
1 TGAAAGTAAATGGACTTAAAGGGT
47974149 TGAAAGTAAATGGACTTAAAGGGT
1 TGAAAGTAAATGGACTTAAAGGGT
47974173 AATTATTCTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.42, C:0.04, G:0.29, T:0.25
Consensus pattern (24 bp):
TGAAAGTAAATGGACTTAAAGGGT
Found at i:47976813 original size:21 final size:21
Alignment explanation
Indices: 47976787--47976826 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
47976777 AAATCTTTAG
47976787 TTCTATGAGTAGGATGCTTAA
1 TTCTATGAGTAGGATGCTTAA
47976808 TTCTATGAGTAGGATGCTT
1 TTCTATGAGTAGGATGCTT
47976827 GCCTAAGTCC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.25, C:0.10, G:0.25, T:0.40
Consensus pattern (21 bp):
TTCTATGAGTAGGATGCTTAA
Found at i:47979916 original size:17 final size:19
Alignment explanation
Indices: 47979874--47979917 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
47979864 ATGAAATTTT
*
47979874 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
47979893 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
47979911 AA-TATTA
1 AATTATTA
47979918 CTGTATGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:47980030 original size:15 final size:15
Alignment explanation
Indices: 47980012--47980040 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
47980002 ATATTTATAA
47980012 AATTATTATTATTAT
1 AATTATTATTATTAT
47980027 AATTATTATTATTA
1 AATTATTATTATTA
47980041 GATAGGAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (15 bp):
AATTATTATTATTAT
Found at i:47995234 original size:21 final size:21
Alignment explanation
Indices: 47995197--47995247 Score: 52
Period size: 21 Copynumber: 2.4 Consensus size: 21
47995187 ACTATTGTTG
47995197 AGAAGGAAGTTGATGCTGCAA-A
1 AGAA-GAAGTTGATGCT-CAAGA
47995219 AGAAGAAGTT-ATTGCTCAAGA
1 AGAAGAAGTTGA-TGCTCAAGA
*
47995240 AAAAGAAG
1 AGAAGAAG
47995248 ATGCTGAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
20 4 0.15
21 18 0.69
22 4 0.15
ACGTcount: A:0.47, C:0.08, G:0.27, T:0.18
Consensus pattern (21 bp):
AGAAGAAGTTGATGCTCAAGA
Found at i:47995708 original size:17 final size:17
Alignment explanation
Indices: 47995686--47995718 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
47995676 GATAAGTATA
*
47995686 TATTGTCGTTGCATTTC
1 TATTGTCATTGCATTTC
47995703 TATTGTCATTGCATTT
1 TATTGTCATTGCATTT
47995719 AAATTTTACT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.15, C:0.15, G:0.15, T:0.55
Consensus pattern (17 bp):
TATTGTCATTGCATTTC
Found at i:48000250 original size:14 final size:14
Alignment explanation
Indices: 48000228--48000257 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
48000218 AAAAAGTGGT
*
48000228 CCGATTGAACCGAA
1 CCGAGTGAACCGAA
48000242 CCGAGTGAACCGAA
1 CCGAGTGAACCGAA
48000256 CC
1 CC
48000258 AGCCAAGAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.33, C:0.33, G:0.23, T:0.10
Consensus pattern (14 bp):
CCGAGTGAACCGAA
Found at i:48011643 original size:16 final size:16
Alignment explanation
Indices: 48011624--48011656 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
48011614 ATAAAATGTA
48011624 ATTAAAAAATTATTTG
1 ATTAAAAAATTATTTG
48011640 ATTAAAAAATTATTTG
1 ATTAAAAAATTATTTG
48011656 A
1 A
48011657 CCCATGGCTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.52, C:0.00, G:0.06, T:0.42
Consensus pattern (16 bp):
ATTAAAAAATTATTTG
Found at i:48014250 original size:48 final size:48
Alignment explanation
Indices: 48014179--48014410 Score: 311
Period size: 48 Copynumber: 4.8 Consensus size: 48
48014169 GTATCATGGA
* * * *
48014179 ATGTGTGCTAGAGTAAGACCATGTTTGGGACATGGCATCGGCGATGAT
1 ATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAATGAT
*
48014227 ATGTGTGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCAATGAT
1 ATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAATGAT
*
48014275 ATGTGTGCCAGTGTAAGACCATGTGTGGGACATGGCATCGGCAATGAT
1 ATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAATGAT
* * * * * **
48014323 CTGTATGTCAGTGTAAGACCATATCTGGGATATGGCATCGGTGATGAT
1 ATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAATGAT
* * * *
48014371 ATGTTTGCTAGTATAAAACCATGTCTGGGACATGGCATCG
1 ATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
48014411 ACACTGACAT
Statistics
Matches: 161, Mismatches: 23, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 161 1.00
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.28
Consensus pattern (48 bp):
ATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAATGAT
Found at i:48014760 original size:6 final size:6
Alignment explanation
Indices: 48014749--48014776 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
48014739 ATGAATAAAC
48014749 TTATGT TTATGT TTATGT TTATGT TTAT
1 TTATGT TTATGT TTATGT TTATGT TTAT
48014777 TATGTCATCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.18, C:0.00, G:0.14, T:0.68
Consensus pattern (6 bp):
TTATGT
Found at i:48021577 original size:27 final size:27
Alignment explanation
Indices: 48021554--48021610 Score: 98
Period size: 27 Copynumber: 2.1 Consensus size: 27
48021544 AAATATTCTC
48021554 TAAATTAAT-AAATATTAATTTATTGA
1 TAAATTAATAAAATATTAATTTATTGA
*
48021580 TAAATTAATAAAATATTAATTTATCGA
1 TAAATTAATAAAATATTAATTTATTGA
48021607 TAAA
1 TAAA
48021611 CAATTAGCCT
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
26 9 0.31
27 20 0.69
ACGTcount: A:0.53, C:0.02, G:0.04, T:0.42
Consensus pattern (27 bp):
TAAATTAATAAAATATTAATTTATTGA
Found at i:48024483 original size:62 final size:62
Alignment explanation
Indices: 48024407--48024532 Score: 252
Period size: 62 Copynumber: 2.0 Consensus size: 62
48024397 TTGGTAAAAG
48024407 ATACACCACCTATGGCTATGCAATATATAGGTTAGTTAGCTTAACTTATTCCTGTTCAATTC
1 ATACACCACCTATGGCTATGCAATATATAGGTTAGTTAGCTTAACTTATTCCTGTTCAATTC
48024469 ATACACCACCTATGGCTATGCAATATATAGGTTAGTTAGCTTAACTTATTCCTGTTCAATTC
1 ATACACCACCTATGGCTATGCAATATATAGGTTAGTTAGCTTAACTTATTCCTGTTCAATTC
48024531 AT
1 AT
48024533 GAACCCCATG
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 64 1.00
ACGTcount: A:0.29, C:0.21, G:0.13, T:0.37
Consensus pattern (62 bp):
ATACACCACCTATGGCTATGCAATATATAGGTTAGTTAGCTTAACTTATTCCTGTTCAATTC
Found at i:48040026 original size:51 final size:49
Alignment explanation
Indices: 48039948--48040083 Score: 182
Period size: 49 Copynumber: 2.7 Consensus size: 49
48039938 TGTGAGGTCG
48039948 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTATGATCA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAA-T-TGATCA
* * * ** * * *
48039999 CGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGGATAATTGGTCG
1 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAATTGATCA
48040048 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACC
1 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACC
48040084 ATGTAGCTTC
Statistics
Matches: 73, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
49 36 0.49
50 1 0.01
51 36 0.49
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (49 bp):
CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAATTGATCA
Found at i:48040073 original size:49 final size:51
Alignment explanation
Indices: 48039943--48040083 Score: 187
Period size: 51 Copynumber: 2.8 Consensus size: 51
48039933 TCTATTGTGA
*
48039943 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTAT
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGAAAACTAT
* * * * ** *
48039994 GATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGGATAA-T-T
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGAAAACTAT
*
48040043 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACC
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGCGTACC
48040084 ATGTAGCTTC
Statistics
Matches: 76, Mismatches: 14, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
49 36 0.47
50 1 0.01
51 39 0.51
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.28
Consensus pattern (51 bp):
GGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGAAAACTAT
Found at i:48042092 original size:32 final size:34
Alignment explanation
Indices: 48042056--48042120 Score: 89
Period size: 34 Copynumber: 2.0 Consensus size: 34
48042046 TAACAGTGGT
*
48042056 ACTGGGCCAGAG-CCCTT-TTCAGATTACAATAA
1 ACTGGGCCAGAGCCCCTTATTCAGATAACAATAA
**
48042088 ACTGGGCCTTAGCCCCTTATTCAGATAACAATA
1 ACTGGGCCAGAGCCCCTTATTCAGATAACAATA
48042121 TGGCCCATAG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
32 10 0.36
33 5 0.18
34 13 0.46
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (34 bp):
ACTGGGCCAGAGCCCCTTATTCAGATAACAATAA
Found at i:48043938 original size:26 final size:26
Alignment explanation
Indices: 48043907--48044014 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
48043897 TGAAATGCCC
*
48043907 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
48043933 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
48043959 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
48043985 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
48044011 ATCA
1 ATCA
48044015 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:48045905 original size:12 final size:12
Alignment explanation
Indices: 48045884--48045919 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
48045874 ATTTTGCCTG
48045884 ATAA-AAAAATA
1 ATAATAAAAATA
48045895 ATAATAAAAATA
1 ATAATAAAAATA
*
48045907 AAAATAAAAATA
1 ATAATAAAAATA
48045919 A
1 A
48045920 AAAAATTGGT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 4 0.17
12 19 0.83
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (12 bp):
ATAATAAAAATA
Found at i:48045906 original size:6 final size:6
Alignment explanation
Indices: 48045888--48045922 Score: 61
Period size: 6 Copynumber: 5.8 Consensus size: 6
48045878 TGCCTGATAA
*
48045888 AAAAAT AATAAT AAAAAT AAAAAT AAAAAT AAAAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAA
48045923 AATTGGTGAG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (6 bp):
AAAAAT
Found at i:48046167 original size:15 final size:15
Alignment explanation
Indices: 48046147--48046201 Score: 60
Period size: 15 Copynumber: 3.7 Consensus size: 15
48046137 GTATCTTAGG
48046147 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
48046162 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGA
*
48046177 TTT-TTCTA-TCTTAGA
1 TTTCTT-TATTC-TGGA
48046192 TTTCTTTATT
1 TTTCTTTATT
48046202 TAGTTTTCTT
Statistics
Matches: 33, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
14 4 0.12
15 26 0.79
16 3 0.09
ACGTcount: A:0.13, C:0.13, G:0.11, T:0.64
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:48048415 original size:51 final size:49
Alignment explanation
Indices: 48048349--48048532 Score: 246
Period size: 51 Copynumber: 3.7 Consensus size: 49
48048339 TGAGGTCGCA
48048349 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCGAAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTAC-CGAAAACT-TGATCACG
48048400 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTATGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTA-CCGAAAACT-TGATCACG
* * ** * * *
48048451 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTA-TTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACC-GAAAACTTGATCACG
48048500 TGTGTAGTACTAAGTGCAGGCTACTATG-GTACC
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACC
48048533 AGATAGCTTC
Statistics
Matches: 122, Mismatches: 9, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
48 5 0.04
49 32 0.26
50 3 0.02
51 81 0.66
52 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.28
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCGAAAACTTGATCACG
Found at i:48058946 original size:20 final size:19
Alignment explanation
Indices: 48058910--48058960 Score: 54
Period size: 20 Copynumber: 2.7 Consensus size: 19
48058900 AAGGGTTATT
*
48058910 TTGTAAA-GTTGTAAAATAA
1 TTGTAAATG-TGTGAAATAA
48058929 GTTGTAAATGTGTGAAATAA
1 -TTGTAAATGTGTGAAATAA
48058949 TTG-AAAT-TGTGA
1 TTGTAAATGTGTGA
48058961 GTTGCTATAG
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
17 5 0.17
18 4 0.14
19 3 0.10
20 16 0.55
21 1 0.03
ACGTcount: A:0.41, C:0.00, G:0.22, T:0.37
Consensus pattern (19 bp):
TTGTAAATGTGTGAAATAA
Found at i:48066860 original size:18 final size:18
Alignment explanation
Indices: 48066839--48066904 Score: 60
Period size: 18 Copynumber: 3.3 Consensus size: 18
48066829 AGAATGAGAG
48066839 AATGAAAGAGAAATATTA
1 AATGAAAGAGAAATATTA
* *
48066857 AATGAAGGATGAATGATATGAGA
1 AATGAAAGA-GAA--ATAT--TA
48066880 GAATGAAAGAGAAATATTA
1 -AATGAAAGAGAAATATTA
48066899 AATGAA
1 AATGAA
48066905 GGATGAATGA
Statistics
Matches: 38, Mismatches: 4, Indels: 12
0.70 0.07 0.22
Matches are distributed among these distances:
18 14 0.37
19 4 0.11
21 8 0.21
23 4 0.11
24 8 0.21
ACGTcount: A:0.56, C:0.00, G:0.23, T:0.21
Consensus pattern (18 bp):
AATGAAAGAGAAATATTA
Found at i:48066879 original size:42 final size:42
Alignment explanation
Indices: 48066832--48066915 Score: 168
Period size: 42 Copynumber: 2.0 Consensus size: 42
48066822 GAATGAGAGA
48066832 ATGAGAGAATGAAAGAGAAATATTAAATGAAGGATGAATGAT
1 ATGAGAGAATGAAAGAGAAATATTAAATGAAGGATGAATGAT
48066874 ATGAGAGAATGAAAGAGAAATATTAAATGAAGGATGAATGAT
1 ATGAGAGAATGAAAGAGAAATATTAAATGAAGGATGAATGAT
48066916 GGATGATTGA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.52, C:0.00, G:0.26, T:0.21
Consensus pattern (42 bp):
ATGAGAGAATGAAAGAGAAATATTAAATGAAGGATGAATGAT
Found at i:48072048 original size:29 final size:29
Alignment explanation
Indices: 48072004--48072067 Score: 110
Period size: 29 Copynumber: 2.2 Consensus size: 29
48071994 TTAAACCCCA
* *
48072004 AATGTGTCCCTTTCTTCTTGCTACAATAG
1 AATGTATCCCTCTCTTCTTGCTACAATAG
48072033 AATGTATCCCTCTCTTCTTGCTACAATAG
1 AATGTATCCCTCTCTTCTTGCTACAATAG
48072062 AATGTA
1 AATGTA
48072068 CCAAAAGCAG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.25, C:0.23, G:0.12, T:0.39
Consensus pattern (29 bp):
AATGTATCCCTCTCTTCTTGCTACAATAG
Found at i:48077461 original size:17 final size:19
Alignment explanation
Indices: 48077439--48077476 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
48077429 ATTAATATAA
48077439 AATAC-AAT-ATTAAAAAT
1 AATACAAATGATTAAAAAT
*
48077456 AATACAAATGATTCAAAAT
1 AATACAAATGATTAAAAAT
48077475 AA
1 AA
48077477 CTTGCAATTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 5 0.28
18 3 0.17
19 10 0.56
ACGTcount: A:0.63, C:0.08, G:0.03, T:0.26
Consensus pattern (19 bp):
AATACAAATGATTAAAAAT
Found at i:48081279 original size:39 final size:40
Alignment explanation
Indices: 48081069--48081299 Score: 313
Period size: 40 Copynumber: 5.8 Consensus size: 40
48081059 GGATATAACT
* * *
48081069 ACTCGCTCAAATGCCTTCGGGACATAGCCCGG-TTAGAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATT-TAGTA
*
48081109 ACTCGCACAATTGCCTTCGGGACTTAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* *
48081149 ACTCGCACAAATGCCTTCAGGACTTAGCCCAGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* *
48081189 ATTCGCACAAATGCCTTCGGGACTTAGCCCGGGTTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* *
48081229 ACTCGCACAGATGCCTTCGGGACTTAGCCCGGA-TTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* ** *
48081268 ACTAGTGCAGATGCCTTCGGGACTTAGCCCGG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
48081300 TTTTCATCCA
Statistics
Matches: 172, Mismatches: 18, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
39 34 0.20
40 136 0.79
41 2 0.01
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.25
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
Found at i:48089487 original size:39 final size:40
Alignment explanation
Indices: 48089284--48089507 Score: 319
Period size: 40 Copynumber: 5.6 Consensus size: 40
48089274 ACTACTCACT
* *
48089284 CAAATGCCTTCGGGACATAGCCCGG-TTAGAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
48089324 CAATTGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
48089364 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
48089404 CAAATGCCTTCGGGACTTAGCCC-GAGTTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGA-TTTAGTAACTCGCA
* * * **
48089444 CAGATGCCTTCGGGACTTAGCCCGGA-TTAGTCACTAGTG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
48089483 CAGATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
48089508 TTTTCATCCA
Statistics
Matches: 170, Mismatches: 11, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
39 36 0.21
40 130 0.76
41 4 0.02
ACGTcount: A:0.23, C:0.27, G:0.25, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:48091980 original size:37 final size:37
Alignment explanation
Indices: 48091926--48092058 Score: 230
Period size: 37 Copynumber: 3.6 Consensus size: 37
48091916 CGAATAGTCC
*
48091926 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
* * *
48091963 CCAAACGTAGTCATCGGGTCTTACCTGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
48092000 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
48092037 CCACACGTAGTCATCGGGTCTT
1 CCACACGTAGTCATCGGGTCTT
48092059 TACCACATAT
Statistics
Matches: 89, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 89 1.00
ACGTcount: A:0.26, C:0.30, G:0.20, T:0.25
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:48092112 original size:48 final size:48
Alignment explanation
Indices: 48092056--48092397 Score: 585
Period size: 48 Copynumber: 7.1 Consensus size: 48
48092046 GTCATCGGGT
* * * *
48092056 CTTTACCACATATACATATCTCGTATATATTTCACACTAGCCATTCGC
1 CTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGG
*
48092104 CTTTACCACATATACATATCTCGTACATATTTCACATTAGCCATTCGG
1 CTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGG
* * *
48092152 CTTTACCACATATACATATGTCATACATATTTCACACTAGCCATTCGA
1 CTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGG
* *
48092200 CTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTTGA
1 CTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGG
48092248 CTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGG
1 CTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGG
48092296 CTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGG
1 CTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGG
*
48092344 CTTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCGG
1 CTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGG
48092392 CTTTAC
1 CTTTAC
48092398 TACACACATA
Statistics
Matches: 281, Mismatches: 13, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 281 1.00
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.36
Consensus pattern (48 bp):
CTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGG
Found at i:48097259 original size:28 final size:28
Alignment explanation
Indices: 48097227--48097285 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
48097217 TTATGAGAAA
48097227 AAACGTTTGGAAACTGATTGGCTTGTGT
1 AAACGTTTGGAAACTGATTGGCTTGTGT
48097255 AAACGTTTGGAAACTGATTGGCTTGTGT
1 AAACGTTTGGAAACTGATTGGCTTGTGT
48097283 AAA
1 AAA
48097286 TAACTCCTTG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.29, C:0.10, G:0.27, T:0.34
Consensus pattern (28 bp):
AAACGTTTGGAAACTGATTGGCTTGTGT
Found at i:48101734 original size:22 final size:22
Alignment explanation
Indices: 48101708--48101756 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 22
48101698 TGCACCAGTA
* *
48101708 TATGAAATCCCT-TAATTGGTAG
1 TATGAAAGCCCTGTAA-GGGTAG
48101730 TATGAAAGCCCTGTAAGGGTAG
1 TATGAAAGCCCTGTAAGGGTAG
48101752 TATGA
1 TATGA
48101757 GACTTTGTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 21 0.88
23 3 0.12
ACGTcount: A:0.33, C:0.12, G:0.24, T:0.31
Consensus pattern (22 bp):
TATGAAAGCCCTGTAAGGGTAG
Found at i:48103199 original size:53 final size:53
Alignment explanation
Indices: 48103136--48103241 Score: 194
Period size: 53 Copynumber: 2.0 Consensus size: 53
48103126 TCTTTGGAGG
48103136 ACTTGCTATGTAAATGCGATTAAACATTTGAGGATTATTGCACTTCATCAATC
1 ACTTGCTATGTAAATGCGATTAAACATTTGAGGATTATTGCACTTCATCAATC
* *
48103189 ACTTGTTATGTAAATGGGATTAAACATTTGAGGATTATTGCACTTCATCAATC
1 ACTTGCTATGTAAATGCGATTAAACATTTGAGGATTATTGCACTTCATCAATC
48103242 GAATACAAAC
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
53 51 1.00
ACGTcount: A:0.32, C:0.15, G:0.16, T:0.37
Consensus pattern (53 bp):
ACTTGCTATGTAAATGCGATTAAACATTTGAGGATTATTGCACTTCATCAATC
Found at i:48104121 original size:5 final size:6
Alignment explanation
Indices: 48104105--48104147 Score: 50
Period size: 6 Copynumber: 7.0 Consensus size: 6
48104095 TATAGATACA
* **
48104105 ATTTTT ATTTTT ATTTTT ACTAAT ATATTTT ATTTTT ATTTTT
1 ATTTTT ATTTTT ATTTTT ATTTTT AT-TTTT ATTTTT ATTTTT
48104148 GGGTTTAGTG
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
6 26 0.87
7 4 0.13
ACGTcount: A:0.23, C:0.02, G:0.00, T:0.74
Consensus pattern (6 bp):
ATTTTT
Found at i:48112062 original size:16 final size:17
Alignment explanation
Indices: 48112030--48112063 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
48112020 GCTAGCATGA
48112030 TAAGTAGTATGAAATAT
1 TAAGTAGTATGAAATAT
*
48112047 TAAGTAG-ATGATATAT
1 TAAGTAGTATGAAATAT
48112063 T
1 T
48112064 GATGATGAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.44, C:0.00, G:0.18, T:0.38
Consensus pattern (17 bp):
TAAGTAGTATGAAATAT
Found at i:48113502 original size:22 final size:22
Alignment explanation
Indices: 48113474--48113553 Score: 65
Period size: 22 Copynumber: 3.5 Consensus size: 22
48113464 AAGTGTATAT
48113474 ATGTGATAATGCCTAATGGCCG
1 ATGTGATAATGCCTAATGGCCG
***
48113496 ATGTGATGAATG--TGAAGTGGTATAT
1 ATGTGAT-AATGCCT-AA-TGG--CCG
*
48113521 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAATGCCTAATGGCCG
48113543 ATGTGATAATG
1 ATGTGATAATG
48113554 TGAAAGTGTA
Statistics
Matches: 43, Mismatches: 8, Indels: 14
0.66 0.12 0.22
Matches are distributed among these distances:
21 1 0.02
22 19 0.44
23 7 0.16
24 6 0.14
25 9 0.21
26 1 0.02
ACGTcount: A:0.30, C:0.10, G:0.30, T:0.30
Consensus pattern (22 bp):
ATGTGATAATGCCTAATGGCCG
Found at i:48113506 original size:47 final size:47
Alignment explanation
Indices: 48113390--48113837 Score: 739
Period size: 47 Copynumber: 9.5 Consensus size: 47
48113380 ATGATTGTAT
48113390 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA-AA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
48113436 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
48113483 TGCCTAATGGCCGATGTGATGAATGTG-AAGTGGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGT-GTATATATGTGATAA
48113530 GGCCTAATGGCCGATGTGAT-AATGTGAAAGTGTATAT-TGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
48113575 GGCCTAATGGCCGATGTGATGAATGTG-AAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
48113621 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATTATAGGTGAT-A
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA-TATATGTGATAA
48113668 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATTGTGAT-A
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA-TGTGATAA
* *
48113715 GTCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAA
*
48113764 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAA
48113813 GGCCTAATGGCCGATGTGATGAATG
1 GGCCTAATGGCCGATGTGATGAATG
48113838 GATAAGTCCC
Statistics
Matches: 384, Mismatches: 7, Indels: 19
0.94 0.02 0.05
Matches are distributed among these distances:
45 38 0.10
46 105 0.27
47 147 0.38
48 15 0.04
49 79 0.21
ACGTcount: A:0.30, C:0.09, G:0.30, T:0.30
Consensus pattern (47 bp):
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
Found at i:48113706 original size:185 final size:189
Alignment explanation
Indices: 48113390--48113837 Score: 741
Period size: 185 Copynumber: 2.4 Consensus size: 189
48113380 ATGATTGTAT
48113390 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA-AAGGCCTAATGGCCGATGTG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
* *
48113454 ATGAATGTGAAAGTGTATATATGTGATAATGCCTAATGGCCGATGTGATGAATGTGAAGTGGTAT
66 ATGAATGTGAAAGTGTATATAGGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGTGGTAT
48113519 ATA-TGTGATAAGGCCTAATGGCCGATGTGAT-AATGTGAAAGTG-TATAT-TGTGATAA
131 ATATTGTGAT-AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAA
48113575 GGCCTAATGGCCGATGTGATGAATGTG-AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
48113639 ATGAATGTGAAAGTGTATTATAGGTGAT-AGGCCTAATGGCCGATGTGATGAATGTGAAAGT-GT
66 ATGAATGTGAAAGTGTA-TATAGGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAGTGGT
* *
48113702 ATATATTGTGATAGTCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
129 ATATATTGTGATAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAA
*
48113764 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATG
48113829 TGATGAATG
64 TGATGAATG
48113838 GATAAGTCCC
Statistics
Matches: 247, Mismatches: 5, Indels: 15
0.93 0.02 0.06
Matches are distributed among these distances:
184 16 0.06
185 118 0.48
186 31 0.13
188 5 0.02
189 34 0.14
190 5 0.02
192 38 0.15
ACGTcount: A:0.30, C:0.09, G:0.30, T:0.30
Consensus pattern (189 bp):
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
ATGAATGTGAAAGTGTATATAGGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGTGGTAT
ATATTGTGATAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAA
Found at i:48116668 original size:42 final size:41
Alignment explanation
Indices: 48116595--48116693 Score: 157
Period size: 42 Copynumber: 2.4 Consensus size: 41
48116585 TTGGTTTTCA
48116595 GCACTAAGTGTGCGGG-AATAGTGTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAGTGTCACGGTTGTGAGATTG
*
48116635 GCA-TAAGTGTGCGGGCAAATAAGTGTTACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGC-AAT-AGTGTCACGGTTGTGAGATTG
48116677 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
48116694 TTGAAATGCA
Statistics
Matches: 54, Mismatches: 1, Indels: 5
0.90 0.02 0.08
Matches are distributed among these distances:
39 12 0.22
40 3 0.06
41 3 0.06
42 23 0.43
43 13 0.24
ACGTcount: A:0.23, C:0.13, G:0.37, T:0.26
Consensus pattern (41 bp):
GCACTAAGTGTGCGGGCAATAGTGTCACGGTTGTGAGATTG
Found at i:48117252 original size:40 final size:40
Alignment explanation
Indices: 48117062--48117357 Score: 300
Period size: 40 Copynumber: 7.4 Consensus size: 40
48117052 AATGATGTCC
* *
48117062 GGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATATCCG
1 GGCTAAGTCCCGAAGAGCATTCGTGCT-AGTGA-TATATCCG
* * * * *
48117102 GACTAAGAT-CCGAAG-GCATTGGTGCGAGTTACTAAATCCG
1 GGCTAAG-TCCCGAAGAGCATTCGTGCTAGTGA-TATATCCG
* * *
48117142 GGCTAAGTCCTGAAG-GCATTCATGCTAGTGATGTATCCG
1 GGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCG
* *
48117181 GGCTAAGTTCCGAAGAAGCATTCATGCTAGTGATATATCCG
1 GGCTAAGTCCCGAAG-AGCATTCGTGCTAGTGATATATCCG
* *
48117222 GGCTAAGTCCCGAGGAGCATTCGTGCTAGTGATGTATCCG
1 GGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCG
**
48117262 GGCTAAGTTTCGAAGAGCATTCGTGCTAGTGATATATCCG
1 GGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCG
* * * *
48117302 TGCTAA-ACCCAAAAGAGCATTCGTGCT-GTGTTATATCCG
1 GGCTAAGTCCC-GAAGAGCATTCGTGCTAGTGATATATCCG
*
48117341 GGCTAGGTCCCGAAGAG
1 GGCTAAGTCCCGAAGAG
48117358 TAATCATGCT
Statistics
Matches: 214, Mismatches: 35, Indels: 15
0.81 0.13 0.06
Matches are distributed among these distances:
39 41 0.19
40 130 0.61
41 43 0.20
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCG
Found at i:48120941 original size:47 final size:47
Alignment explanation
Indices: 48120883--48121289 Score: 764
Period size: 47 Copynumber: 8.7 Consensus size: 47
48120873 AAGATAGTAT
48120883 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
48120930 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
48120977 -GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
48121023 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
48121070 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
48121117 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA-GTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
* *
48121163 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
48121210 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
48121257 GGCCTAATGGCCGATGTGATGAATGTGATAAGT
1 GGCCTAATGGCCGATGTGATGAATGTGA-AAGT
48121290 CCCGAAGGGC
Statistics
Matches: 354, Mismatches: 3, Indels: 5
0.98 0.01 0.01
Matches are distributed among these distances:
46 92 0.26
47 258 0.73
48 4 0.01
ACGTcount: A:0.31, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
Found at i:48121160 original size:140 final size:141
Alignment explanation
Indices: 48120883--48121289 Score: 764
Period size: 140 Copynumber: 2.9 Consensus size: 141
48120873 AAGATAGTAT
48120883 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
48120948 ATGAATGTGAAAGTGTATATATGTGATAA-GCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
66 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
48121012 ATATGTGATAA
131 ATATGTGATAA
48121023 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
48121088 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
66 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
48121153 ATA-GTGATAA
131 ATATGTGATAA
* *
48121163 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGATAGGGCCTAATGGCCGATGTG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
*
48121228 ATGAATGTGAAAGTGTATATATGTGATAGGGCCTAATGGCCGATGTGATGAATGTGATAAGT
66 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA-AAGT
48121290 CCCGAAGGGC
Statistics
Matches: 262, Mismatches: 3, Indels: 3
0.98 0.01 0.01
Matches are distributed among these distances:
140 220 0.84
141 42 0.16
ACGTcount: A:0.31, C:0.09, G:0.30, T:0.29
Consensus pattern (141 bp):
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
ATATGTGATAA
Found at i:48121198 original size:187 final size:187
Alignment explanation
Indices: 48120883--48121289 Score: 762
Period size: 187 Copynumber: 2.2 Consensus size: 187
48120873 AAGATAGTAT
48120883 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
48120948 ATGAATGTGAAAGTGTATATATGTGATAAGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
66 ATGAATGTGAAAGTGTATATATGTGATAAGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
*
48121013 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
131 TATATGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
48121070 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
48121135 ATGAATGTGAAAGTGTATATA-GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
66 ATGAATGTGAAAGTGTATATATGTGATAA-GCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
* *
48121199 ATATATGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAG
130 ATATATGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
48121257 GGCCTAATGGCCGATGTGATGAATGTGATAAGT
1 GGCCTAATGGCCGATGTGATGAATGTGA-AAGT
48121290 CCCGAAGGGC
Statistics
Matches: 215, Mismatches: 3, Indels: 3
0.97 0.01 0.01
Matches are distributed among these distances:
186 7 0.03
187 204 0.95
188 4 0.02
ACGTcount: A:0.31, C:0.09, G:0.30, T:0.29
Consensus pattern (187 bp):
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
ATGAATGTGAAAGTGTATATATGTGATAAGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
TATATGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
Found at i:48121463 original size:37 final size:37
Alignment explanation
Indices: 48121407--48121485 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
48121397 CCGAGCTCTA
* * *
48121407 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
48121444 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
48121481 AAGAC
1 AAGAC
48121486 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:48135046 original size:16 final size:16
Alignment explanation
Indices: 48135025--48135074 Score: 66
Period size: 17 Copynumber: 3.1 Consensus size: 16
48135015 ATTGCATACA
48135025 TTGCATTTAGATTAAT
1 TTGCATTTAGATTAAT
* *
48135041 TTGCATTTAGGATCACT
1 TTGCATTTA-GATTAAT
48135058 TTGCATTTAG-TTAAT
1 TTGCATTTAGATTAAT
48135073 TT
1 TT
48135075 AATTTAATTT
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
15 5 0.17
16 10 0.34
17 14 0.48
ACGTcount: A:0.26, C:0.10, G:0.14, T:0.50
Consensus pattern (16 bp):
TTGCATTTAGATTAAT
Found at i:48137123 original size:29 final size:29
Alignment explanation
Indices: 48137090--48137145 Score: 71
Period size: 29 Copynumber: 1.9 Consensus size: 29
48137080 TCCAAAGTTC
48137090 GATAT-CATGGC-CTAAAGCCAAAATCAGGT
1 GATATGCATGGCTC-AAAGCC-AAATCAGGT
*
48137119 GATATGCTTGGCTCAAAGCCAAATCAG
1 GATATGCATGGCTCAAAGCCAAATCAG
48137146 TGTATCTCAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
29 12 0.50
30 11 0.46
31 1 0.04
ACGTcount: A:0.36, C:0.21, G:0.21, T:0.21
Consensus pattern (29 bp):
GATATGCATGGCTCAAAGCCAAATCAGGT
Found at i:48138506 original size:27 final size:27
Alignment explanation
Indices: 48138460--48138514 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 27
48138450 AACATAATAT
*
48138460 AATTATAAAATAATTAAATTTTACTTA
1 AATTATAAAATAATTAAATTTTAATTA
*
48138487 AATTATGAAAAT-ATTGAATTTTAATTA
1 AATTAT-AAAATAATTAAATTTTAATTA
48138514 A
1 A
48138515 TTCTATAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 20 0.80
28 5 0.20
ACGTcount: A:0.51, C:0.02, G:0.04, T:0.44
Consensus pattern (27 bp):
AATTATAAAATAATTAAATTTTAATTA
Found at i:48140051 original size:22 final size:22
Alignment explanation
Indices: 48140025--48140068 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
48140015 TACTTAGTTA
48140025 AATTTTAGTTCTTAATCACTTC
1 AATTTTAGTTCTTAATCACTTC
48140047 AATTTTAGTTCTTAATCACTTC
1 AATTTTAGTTCTTAATCACTTC
48140069 CTCAAAATCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.27, C:0.18, G:0.05, T:0.50
Consensus pattern (22 bp):
AATTTTAGTTCTTAATCACTTC
Found at i:48142279 original size:109 final size:109
Alignment explanation
Indices: 48142143--48142457 Score: 502
Period size: 101 Copynumber: 3.0 Consensus size: 109
48142133 TTAACGGCCG
48142143 ACCAATATGCATGGATTAATGACTTGAATTATTTATTATGTTTTATGGCATTATGGTATACTTTA
1 ACCAATATGCATGGATTAATGACTTGAATTATTTATTATGTTTTATGGCATTATGGTATACTTTA
48142208 ATATATGTTAATATATTATATTTAATAAAAGATGAAAGTAGCCA
66 ATATATGTTAATATATTATATTTAATAAAAGATGAAAGTAGCCA
*
48142252 ACCAATATGCATGGATTACTGACTTGAATTATTTATTATGTTTTATGGCATTATGGTATAC-TTA
1 ACCAATATGCATGGATTAATGACTTGAATTATTTATTATGTTTTATGGCATTATGGTATACTTTA
*
48142316 ATATATG-T--TA-A-TATA-TT-ATAAAAGATGAAAGTAGCCG
66 ATATATGTTAATATATTATATTTAATAAAAGATGAAAGTAGCCA
* *
48142353 ACCAATATGCATGGATTAATGACTTGAATTGTTTATTATATTTTATGGCATTATGGTATACTTTA
1 ACCAATATGCATGGATTAATGACTTGAATTATTTATTATGTTTTATGGCATTATGGTATACTTTA
* * * *
48142418 ATATATGTTAATATATTATGTTTAAGAAGAGAGGAAAGTA
66 ATATATGTTAATATATTATATTTAATAAAAGATGAAAGTA
48142458 TTCATCTTTC
Statistics
Matches: 189, Mismatches: 9, Indels: 16
0.88 0.04 0.07
Matches are distributed among these distances:
101 77 0.41
102 12 0.06
103 5 0.03
104 1 0.01
105 4 0.02
106 1 0.01
107 4 0.02
108 12 0.06
109 73 0.39
ACGTcount: A:0.37, C:0.07, G:0.16, T:0.41
Consensus pattern (109 bp):
ACCAATATGCATGGATTAATGACTTGAATTATTTATTATGTTTTATGGCATTATGGTATACTTTA
ATATATGTTAATATATTATATTTAATAAAAGATGAAAGTAGCCA
Found at i:48142893 original size:28 final size:28
Alignment explanation
Indices: 48142824--48142893 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 28
48142814 TATGAGATTG
*
48142824 GCACTAAGTGTGCAAGTTTAATTGTATA
1 GCACTAAGTGTGCGAGTTTAATTGTATA
* *
48142852 GCACTAAGTGTGCGAGTTTGATTAT-TAA
1 GCACTAAGTGTGCGAGTTTAATTGTAT-A
48142880 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
48142894 GACTTACTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
27 1 0.03
28 37 0.97
ACGTcount: A:0.29, C:0.13, G:0.26, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTGTATA
Found at i:48147724 original size:48 final size:48
Alignment explanation
Indices: 48147672--48147806 Score: 157
Period size: 48 Copynumber: 2.8 Consensus size: 48
48147662 ATGTGAGTAT
*
48147672 TGAGATC-CTATATAAGACCATATCTAGGATATGACATCGGCATCTG-TA
1 TGAGATCTC-ATATAAGACCATATCTAGGATATGGCATCGGCATC-GATA
* * *
48147720 TGAGATTTCATGTAAGACCATATCTAGGATATGGCATTGGCATCGATA
1 TGAGATCTCATATAAGACCATATCTAGGATATGGCATCGGCATCGATA
* * * * *
48147768 TGAGGTCTCGTATAAGACCATGTCTGGGACATGGCATCG
1 TGAGATCTCATATAAGACCATATCTAGGATATGGCATCG
48147807 ACACCGTTAT
Statistics
Matches: 73, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
47 1 0.01
48 71 0.97
49 1 0.01
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.29
Consensus pattern (48 bp):
TGAGATCTCATATAAGACCATATCTAGGATATGGCATCGGCATCGATA
Found at i:48147818 original size:48 final size:48
Alignment explanation
Indices: 48147681--48147848 Score: 133
Period size: 48 Copynumber: 3.5 Consensus size: 48
48147671 TTGAGATCCT
* * * * * * **
48147681 ATATAAGACCATATCTAGGATATGACATCGGCATCTG-TATGAGATTTC
1 ATATAAGACCATGTCTGGGACATGGCATCGACA-CCGATATGAGCCTTC
* * * * * * * *
48147729 ATGTAAGACCATATCTAGGATATGGCATTGGCATCGATATGAG-GTCTC
1 ATATAAGACCATGTCTGGGACATGGCATCGACACCGATATGAGCCT-TC
* *
48147777 GTATAAGACCATGTCTGGGACATGGCATCGACACCGTTATGAGCCTTC
1 ATATAAGACCATGTCTGGGACATGGCATCGACACCGATATGAGCCTTC
*
48147825 ATGTAAGACCATGTCTGGGACATG
1 ATATAAGACCATGTCTGGGACATG
48147849 ACTTTGATAT
Statistics
Matches: 99, Mismatches: 18, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
47 2 0.02
48 96 0.97
49 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (48 bp):
ATATAAGACCATGTCTGGGACATGGCATCGACACCGATATGAGCCTTC
Found at i:48147937 original size:43 final size:42
Alignment explanation
Indices: 48147889--48148071 Score: 142
Period size: 43 Copynumber: 4.3 Consensus size: 42
48147879 GTCTGTGACA
* *
48147889 TGGCATTGATACGAGATTACGTGTAAGACCATAGCTAGGCAAT
1 TGGCATTGATATGAGATTACATGTAAGACCATAGCT-GGCAAT
* * * *
48147932 TGGCATTGGTATGATATTACGTGTAAGACCAT-GTCTGGGACA-
1 TGGCATTGATATGAGATTACATGTAAGACCATAG-CTGGCA-AT
* * * * *
48147974 TAGCATCGTTATGAGATTTCATGTAAGACCATAGCTGGGCTAT
1 TGGCATTGATATGAGATTACATGTAAGACCATAGCT-GGCAAT
* * * *
48148017 TGGC-TTCGATATGATAATACATGTAAGACCATATCTGG-GAT
1 TGGCATT-GATATGAGATTACATGTAAGACCATAGCTGGCAAT
48148058 ATGGCATTG-TATGA
1 -TGGCATTGATATGA
48148072 CATATGCATG
Statistics
Matches: 112, Mismatches: 20, Indels: 18
0.75 0.13 0.12
Matches are distributed among these distances:
41 7 0.06
42 41 0.37
43 64 0.57
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.31
Consensus pattern (42 bp):
TGGCATTGATATGAGATTACATGTAAGACCATAGCTGGCAAT
Found at i:48147974 original size:85 final size:85
Alignment explanation
Indices: 48147866--48148066 Score: 242
Period size: 85 Copynumber: 2.4 Consensus size: 85
48147856 TATAATATTT
* * * *
48147866 CATGCAAGGCCATGTCTGTGACATGGCATTGATACGAGATTACGTGTAAGACCATAGCTAGGCAA
1 CATGTAAGACCATGTCTGGGACATGGCATTGATACGAGATTACATGTAAGACCATAGCTAGGCAA
* *
48147931 TTGGCATT-GGTATGATATTA
66 TTGGC-TTCGATATGATAATA
* * * * * * * *
48147951 CGTGTAAGACCATGTCTGGGACATAGCATCGTTATGAGATTTCATGTAAGACCATAGCTGGGCTA
1 CATGTAAGACCATGTCTGGGACATGGCATTGATACGAGATTACATGTAAGACCATAGCTAGGCAA
48148016 TTGGCTTCGATATGATAATA
66 TTGGCTTCGATATGATAATA
* *
48148036 CATGTAAGACCATATCTGGGATATGGCATTG
1 CATGTAAGACCATGTCTGGGACATGGCATTG
48148067 TATGACATAT
Statistics
Matches: 96, Mismatches: 19, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
84 2 0.02
85 94 0.98
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.29
Consensus pattern (85 bp):
CATGTAAGACCATGTCTGGGACATGGCATTGATACGAGATTACATGTAAGACCATAGCTAGGCAA
TTGGCTTCGATATGATAATA
Found at i:48148000 original size:42 final size:42
Alignment explanation
Indices: 48147704--48148071 Score: 201
Period size: 42 Copynumber: 8.4 Consensus size: 42
48147694 TCTAGGATAT
*
48147704 GACATCGGCATCTG-TATGAGATTTCATGTAAGACCATATCTAGG
1 GACAT-GGCAT-TGATATGAGATTTCATGTAAGACCATGTCT-GG
* * * * * *
48147748 ATATGGCATTGGCATCGATATGAGGTCTCGTATAAGACCATGTCTGG
1 ----GACA-TGGCATTGATATGAGATTTCATGTAAGACCATGTCTGG
* **
48147795 GACATGGCATCGACACCGTTATGAGCCTTCATGTAAGACCATGTCTGG
1 GACATGGCATTG--A----TATGAGATTTCATGTAAGACCATGTCTGG
* * * * * * *
48147843 GACATGACTTTGATATAATATTTCATGCAAGGCCATGTCTGT
1 GACATGGCATTGATATGAGATTTCATGTAAGACCATGTCTGG
* * * *
48147885 GACATGGCATTGATACGAGATTACGTGTAAGACCATAG-CTAG
1 GACATGGCATTGATATGAGATTTCATGTAAGACCAT-GTCTGG
* * * *
48147927 G-CAATTGGCATTGGTATGATATTACGTGTAAGACCATGTCTGG
1 GAC-A-TGGCATTGATATGAGATTTCATGTAAGACCATGTCTGG
* * *
48147970 GACATAGCATCGTTATGAGATTTCATGTAAGACCATAG-CTGG
1 GACATGGCATTGATATGAGATTTCATGTAAGACCAT-GTCTGG
* * * *
48148012 G-CTATTGGC-TTCGATATGATAATACATGTAAGACCATATCTGG
1 GAC-A-TGGCATT-GATATGAGATTTCATGTAAGACCATGTCTGG
*
48148055 GATATGGCATTG-TATGA
1 GACATGGCATTGATATGA
48148072 CATATGCATG
Statistics
Matches: 248, Mismatches: 52, Indels: 47
0.71 0.15 0.14
Matches are distributed among these distances:
41 7 0.03
42 100 0.40
43 71 0.29
44 2 0.01
46 1 0.00
47 3 0.01
48 63 0.25
49 1 0.00
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.30
Consensus pattern (42 bp):
GACATGGCATTGATATGAGATTTCATGTAAGACCATGTCTGG
Found at i:48153562 original size:47 final size:47
Alignment explanation
Indices: 48153345--48153572 Score: 207
Period size: 47 Copynumber: 4.9 Consensus size: 47
48153335 ATGGGTTATT
* * *
48153345 ATGAGCCAGTGTAAGACCATGTCTAGGAAATGGCATC-AGCATTGAGAC
1 ATGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGA-C-TTGAGAG
* * * *
48153393 ACGAGCTAGTGTAAGA-CATGTCTGGGACAT-GCA-CTGGC-TAAGAG
1 ATGAGCCAGTGTAAGACCATGTCTGGGACATGGCATC-GACTTGAGAG
* * * * *
48153437 ATGTGTCAGTGTAAGACCATGTCTGTGACATGGCGTCGGCCTTGATGACG
1 ATGAGCCAGTGTAAGACCATGTCTGGGACATGGCATC-GACTTGA-GA-G
* * * *
48153487 AT-AGTCAGCGTAAGACCATGTCTAGGACATGGCATCGACTTGAGAT
1 ATGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGAGAG
*
48153533 ATGAGCCAGTGTAAGAACATGTCTGGGACATGGCATCGAC
1 ATGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGAC
48153573 ATTCTACCCC
Statistics
Matches: 144, Mismatches: 27, Indels: 19
0.76 0.14 0.10
Matches are distributed among these distances:
44 16 0.11
45 14 0.10
46 8 0.06
47 50 0.35
48 22 0.15
49 31 0.22
50 3 0.02
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (47 bp):
ATGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGAGAG
Found at i:48156596 original size:93 final size:94
Alignment explanation
Indices: 48156430--48156770 Score: 553
Period size: 93 Copynumber: 3.6 Consensus size: 94
48156420 ACAAGATATG
48156430 TATATGTGATAAGGCCGAATGGCC-ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
48156494 GAATGGCCAATGTGATGAATGTGAAAGTGTA
64 GAATGGCCAATGTGATGAATGTGAAAGTGTA
48156525 TATATGTGATAAGGCCG-ATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGA
48156589 ATGGCCAATGTGATGAATGTGAAAGTGTA
66 ATGGCCAATGTGATGAATGTGAAAGTGTA
* * * * *
48156618 TATATGTGATAAGGCCG-ATGGCCAACGTGATGAATGTGAAAGTGTGTATATGAGATAAGACCTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGA
* * *
48156682 ATGGCCGATGTGATGGATGTGAAGGTGTA
66 ATGGCCAATGTGATGAATGTGAAAGTGTA
* *
48156711 TATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAG
48156771 TCCCGAAGGG
Statistics
Matches: 231, Mismatches: 13, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
93 151 0.65
94 43 0.19
95 37 0.16
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (94 bp):
TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGA
ATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:48156611 original size:47 final size:47
Alignment explanation
Indices: 48156430--48156770 Score: 553
Period size: 47 Copynumber: 7.3 Consensus size: 47
48156420 ACAAGATATG
48156430 TATATGTGATAAGGCCGAATGGCC-ATGTGATGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TA
48156478 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
48156525 TATATGTGATAAGGCCG-ATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
48156571 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
48156618 TATATGTGATAAGGCCG-ATGGCCAACGTGATGAATGTGAAAGTGTG
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * * * * *
48156664 TATATGAGATAAGACCTAATGGCCGATGTGATGGATGTGAAGGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
48156711 TATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
48156758 TAAATGTGATAAG
1 TATATGTGATAAG
48156771 TCCCGAAGGG
Statistics
Matches: 274, Mismatches: 16, Indels: 7
0.92 0.05 0.02
Matches are distributed among these distances:
46 87 0.32
47 143 0.52
48 24 0.09
49 20 0.07
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:48156710 original size:140 final size:140
Alignment explanation
Indices: 48156430--48156770 Score: 551
Period size: 140 Copynumber: 2.4 Consensus size: 140
48156420 ACAAGATATG
48156430 TATATGTGATAAGGCCGAATGGCC-ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
* * * *
48156494 GAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGATGGCCAATGTGATGAA
64 GAATGGCCAACGTGATGAATGTGAAAGTGTATATATGAGATAAGACCAATGGCCAATGTGATGAA
48156559 TGTGAAAGTGTA
129 TGTGAAAGTGTA
48156571 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCG-
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGA
* * *
48156635 ATGGCCAACGTGATGAATGTGAAAGTGTGTATATGAGATAAGACCTAATGGCCGATGTGATGGAT
66 ATGGCCAACGTGATGAATGTGAAAGTGTATATATGAGATAAGACC-AATGGCCAATGTGATGAAT
*
48156700 GTGAAGGTGTA
130 GTGAAAGTGTA
* *
48156711 TATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAG
48156771 TCCCGAAGGG
Statistics
Matches: 188, Mismatches: 10, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
139 41 0.22
140 103 0.55
141 24 0.13
142 20 0.11
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (140 bp):
TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGA
ATGGCCAACGTGATGAATGTGAAAGTGTATATATGAGATAAGACCAATGGCCAATGTGATGAATG
TGAAAGTGTA
Found at i:48158676 original size:40 final size:40
Alignment explanation
Indices: 48158621--48159050 Score: 650
Period size: 40 Copynumber: 10.8 Consensus size: 40
48158611 CAGTATGTTA
*
48158621 TATCCAGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATG
* *
48158661 TATCCGGGCTAAGTCCTGAAGAGCATTTGTGCTGGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATG
*
48158701 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTGGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATG
* *
48158741 TATCCGGGCTAAGTCTCGAAGAGCATTCGT-CTGGTGATA
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATG
** *
48158780 TATCCGAACTAGGTCCCGAAGAGCATTCGTGCTGGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATG
* * * *
48158820 TATCCTGACTAAGTTCCGAAGAGAATTCGTGCTGGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATG
*
48158860 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATA
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATG
* *
48158900 TACCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATA
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATG
* *
48158940 TACCCGGGCTAAGTCCTGAAGAGCATTCGTGCTGGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATG
* *
48158980 TA-CCGGGCTAAGTCCCAAAGAGCATTCATGCTGGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATG
*
48159019 TATCCGGGCTAAGCCCCGAAG-GCATTCGTGCT
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
48159051 TGGACAAAAT
Statistics
Matches: 355, Mismatches: 33, Indels: 5
0.90 0.08 0.01
Matches are distributed among these distances:
39 80 0.23
40 275 0.77
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.26
Consensus pattern (40 bp):
TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATG
Found at i:48158908 original size:159 final size:160
Alignment explanation
Indices: 48158629--48159050 Score: 654
Period size: 159 Copynumber: 2.7 Consensus size: 160
48158619 TATATCCAGG
*
48158629 CTAAGTCCCGAAGAGCATTCGTGCTGGTGATGTATCCGGGCTAAG-TCCTGAAGAGCATTTGTGC
1 CTAAGTCCCGAAGAGCATTCGTGCTGGTGATGTATCCGGGCTAAGTTCC-GAAGAGCATTCGTGC
* * * *
48158693 TGGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTGGTGATGTATCCGGGCTAAGTCTC
65 TGGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATATACCCGGGCTAAGTCCC
*
48158758 GAAGAGCATTCGT-CTGGTGATATATCCGAA
130 GAAGAGCATTCGTGCTGGTGATATACCCGAA
* * * *
48158788 CTAGGTCCCGAAGAGCATTCGTGCTGGTGATGTATCCTGACTAAGTTCCGAAGAGAATTCGTGCT
1 CTAAGTCCCGAAGAGCATTCGTGCTGGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
48158853 GGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATATACCCGGGCTAAGTCCCG
66 GGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATATACCCGGGCTAAGTCCCG
**
48158918 AAGAGCATTCGTGCTGGTGATATACCCGGG
131 AAGAGCATTCGTGCTGGTGATATACCCGAA
* * * *
48158948 CTAAGTCCTGAAGAGCATTCGTGCTGGTGATGTA-CCGGGCTAAGTCCCAAAGAGCATTCATGCT
1 CTAAGTCCCGAAGAGCATTCGTGCTGGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
*
48159012 GGTGATGTATCCGGGCTAAGCCCCGAAG-GCATTCGTGCT
66 GGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
48159051 TGGACAAAAT
Statistics
Matches: 240, Mismatches: 21, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
158 11 0.05
159 180 0.75
160 49 0.20
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.26
Consensus pattern (160 bp):
CTAAGTCCCGAAGAGCATTCGTGCTGGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
GGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATATACCCGGGCTAAGTCCCG
AAGAGCATTCGTGCTGGTGATATACCCGAA
Found at i:48159003 original size:199 final size:199
Alignment explanation
Indices: 48158621--48159050 Score: 643
Period size: 199 Copynumber: 2.2 Consensus size: 199
48158611 CAGTATGTTA
*
48158621 TATCCAGG-CTAAGTCCCGAAGAGCATTCGTGCTGGTGATGTATCCGGGCTAAGTCCTGAAGAGC
1 TATCC-GGACTAAGTCCCGAAGAGCATTCGTGCTGGTGATGTATCCGGGCTAAGTCCCGAAGAGC
* * * * * *
48158685 ATTTGTGCTGGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTGGTGATGTATCCGGGC
65 ATTCGTGCTGGTGATATACCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATATACCCGGGC
* * *
48158750 TAAGTCTCGAAGAGCATTCGTCTGGTGATATATCCGAACTAGGTCCCGAAGAGCATTCGTGCTGG
130 TAAGTCTCGAAGAGCATTCGTCTGGTGATATATCCGAACTAAGTCCCAAAGAGCATTCATGCTGG
48158815 TGATG
195 TGATG
* * *
48158820 TATCCTGACTAAGTTCCGAAGAGAATTCGTGCTGGTGATGTATCCGGGCTAAGTCCCGAAGAGCA
1 TATCCGGACTAAGTCCCGAAGAGCATTCGTGCTGGTGATGTATCCGGGCTAAGTCCCGAAGAGCA
48158885 TTCGTGCTGGTGATATACCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATATACCCGGGCT
66 TTCGTGCTGGTGATATACCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATATACCCGGGCT
* **
48158950 AAGTC-CTGAAGAGCATTCGTGCTGGTGATGTA-CCGGGCTAAGTCCCAAAGAGCATTCATGCTG
131 AAGTCTC-GAAGAGCATTCGT-CTGGTGATATATCCGAACTAAGTCCCAAAGAGCATTCATGCTG
48159013 GTGATG
194 GTGATG
* *
48159019 TATCCGGGCTAAGCCCCGAAG-GCATTCGTGCT
1 TATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
48159051 TGGACAAAAT
Statistics
Matches: 207, Mismatches: 21, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
198 12 0.06
199 185 0.89
200 10 0.05
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.26
Consensus pattern (199 bp):
TATCCGGACTAAGTCCCGAAGAGCATTCGTGCTGGTGATGTATCCGGGCTAAGTCCCGAAGAGCA
TTCGTGCTGGTGATATACCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATATACCCGGGCT
AAGTCTCGAAGAGCATTCGTCTGGTGATATATCCGAACTAAGTCCCAAAGAGCATTCATGCTGGT
GATG
Found at i:48159346 original size:25 final size:25
Alignment explanation
Indices: 48159296--48159346 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
48159286 TGTGTGACAA
* *
48159296 CAAATGAATAGGGGCACTATGTGTG
1 CAAATGAATAGAGGCACTATGAGTG
*
48159321 CAAATGATTAGAGGCACTGA-GAGTG
1 CAAATGAATAGAGGCACT-ATGAGTG
48159346 C
1 C
48159347 GAGTTCTTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
25 21 0.95
26 1 0.05
ACGTcount: A:0.33, C:0.14, G:0.31, T:0.22
Consensus pattern (25 bp):
CAAATGAATAGAGGCACTATGAGTG
Found at i:48163106 original size:47 final size:47
Alignment explanation
Indices: 48162988--48163376 Score: 618
Period size: 47 Copynumber: 8.3 Consensus size: 47
48162978 ACAAGATATG
48162988 TATATGTGATAAGGCCGAATGGCC-ATGTGATGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TA
48163036 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
48163083 TATATGTGATAAGGCCGAGTGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
**
48163130 TATATGTGATAAGGCCGGGTGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
48163177 TATTTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * *
48163224 TATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAAGTGTG
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * * * * *
48163271 TATATGAGATAAGACCTAATGGCCGATGTGATGGATGTGAAGGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
48163318 TATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
48163365 TAAATGTGATAA
1 TATATGTGATAA
48163377 ATCCTGAAGG
Statistics
Matches: 316, Mismatches: 24, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
47 272 0.86
48 24 0.08
49 20 0.06
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.28
Consensus pattern (47 bp):
TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:48166505 original size:25 final size:26
Alignment explanation
Indices: 48166456--48166506 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
48166446 ATTTTTATTT
*
48166456 TTATTAAAATATATTTAACAATAATC
1 TTATTAAAATATATATAACAATAATC
*
48166482 TTATTAAAATTTA-ATAACAATAATC
1 TTATTAAAATATATATAACAATAATC
48166507 ATCTACCTAC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 11 0.48
26 12 0.52
ACGTcount: A:0.51, C:0.08, G:0.00, T:0.41
Consensus pattern (26 bp):
TTATTAAAATATATATAACAATAATC
Found at i:48166648 original size:44 final size:46
Alignment explanation
Indices: 48166579--48166667 Score: 123
Period size: 44 Copynumber: 2.0 Consensus size: 46
48166569 TACAACATCT
*
48166579 ATTCCATTCAACCAAACACAAGAATT-CT-ATTACAGTTCTATTCA
1 ATTCCATTCAACCAAACACAAGAATTACTGATTACAGCTCTATTCA
48166623 ATTCCATTCAACCAAA-A-AATTGAATTACTGATTACAGCTCTATTC
1 ATTCCATTCAACCAAACACAA--GAATTACTGATTACAGCTCTATTC
48166668 CATTACAACT
Statistics
Matches: 40, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
42 2 0.05
43 1 0.03
44 21 0.52
45 2 0.05
46 14 0.35
ACGTcount: A:0.38, C:0.24, G:0.06, T:0.33
Consensus pattern (46 bp):
ATTCCATTCAACCAAACACAAGAATTACTGATTACAGCTCTATTCA
Found at i:48166674 original size:16 final size:16
Alignment explanation
Indices: 48166653--48166722 Score: 86
Period size: 16 Copynumber: 4.4 Consensus size: 16
48166643 TGAATTACTG
*
48166653 ATTACAGCTCTATTCC
1 ATTACAACTCTATTCC
* *
48166669 ATTACAACTCGACTCC
1 ATTACAACTCTATTCC
*
48166685 ATTACAACTCTATTCA
1 ATTACAACTCTATTCC
* *
48166701 ATTACAACCCCATTCC
1 ATTACAACTCTATTCC
48166717 ATTACA
1 ATTACA
48166723 GTGAACCAAA
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 45 1.00
ACGTcount: A:0.33, C:0.33, G:0.03, T:0.31
Consensus pattern (16 bp):
ATTACAACTCTATTCC
Found at i:48166696 original size:32 final size:32
Alignment explanation
Indices: 48166653--48166722 Score: 95
Period size: 32 Copynumber: 2.2 Consensus size: 32
48166643 TGAATTACTG
* * * *
48166653 ATTACAGCTCTATTCCATTACAACTCGACTCC
1 ATTACAACTCTATTCAATTACAACCCCACTCC
*
48166685 ATTACAACTCTATTCAATTACAACCCCATTCC
1 ATTACAACTCTATTCAATTACAACCCCACTCC
48166717 ATTACA
1 ATTACA
48166723 GTGAACCAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.33, C:0.33, G:0.03, T:0.31
Consensus pattern (32 bp):
ATTACAACTCTATTCAATTACAACCCCACTCC
Found at i:48169093 original size:564 final size:565
Alignment explanation
Indices: 48168024--48169155 Score: 2113
Period size: 564 Copynumber: 2.0 Consensus size: 565
48168014 AGAAATGAGG
48168024 TGCCCTGAACAAACATTATTGAGGTAGAATTATTTGATGTTTGGGGTATTGAATTTTTCGGTCAT
1 TGCCCTGAACAAACATTATTGAGGTAGAATTATTTGATGTTTGGGGTATTGAATTTTTCGGTCAT
48168089 TTCCCTCCGTCTTTTGGTCACAAGTACATATTGGTAGCAGTAGACTATATATATAAGTGGGTTGA
66 TTCCCTCCGTCTTTTGGTCACAAGTACATATTGGTAGCAGTAGACTATATATATAAGTGGGTTGA
* *
48168154 GGCCGAGGCATAACCGATGAACGATTCTAAGGTTGTGATGAAGTTTTTGTGGAAACATGTGTTCA
131 GGCCGAGGCATAACCGATGAACGATGCTAAGGTTGTGATGAAGTTTTTGTAGAAACATGTGTTCA
48168219 CAAGGTTTGGAACTCCTAAGGCCATCATTAGTGATGAGGGGTCCCATTTTTTTGAACAATTGGTT
196 CAAGGTTTGGAACTCCTAAGGCCATCATTAGTGATGAGGGGTCCCATTTTTTTGAACAATTGGTT
48168284 GAAATGGTTACTCGAAAAACATGGAGTGAAGCACAAAGTTGCCACAACTTACCATCCACAACAAA
261 GAAATGGTTACTCGAAAAACATGGAGTGAAGCACAAAGTTGCCACAACTTACCATCCACAACAAA
*
48168349 TCGGCAAGATAAACTGGAAAACAAAGAGATAAAAGGCATACTCAAGAAGGTACTTTGCCTGAATT
326 TCGGCAAGATAAACTGGAAAACAAAGAGATAAAAGGCATACTCAAGAAGGTACTTTGCCTGAATC
*
48168414 GATGAGATTGGTCCAAAAGACTGTATAATGTTTTATGGGCCTACAAGACAACATACAAGATACCT
391 GATGAGATTGGTCCAAAAGACTGGATAATGTTTTATGGGCCTACAAGACAACATACAAGATACCT
*
48168479 TTAGGGATATCAGCCTATAGGTTGGTTTTTAGGAAAGCCTGCCAACTACCCTTAGAGTTATAACA
456 TTAGGGATATCAGCCTATAGGTTGGTTTTTAGGAAAGCCTGCCAACTACCCTTAGAGTTAGAACA
*
48168544 CAAAGATTATTGGGCTCTCCAACAATTCAACTTGGATATTAAGCT
521 CAAAGATTACTGGGCTCTCCAACAATTCAACTTGGATATTAAGCT
* *
48168589 TGCCCTGAACAAACATTATTGAGGTAGAATTATTTGATGTTTGGGGTATTGACTTTTTCGGTCCT
1 TGCCCTGAACAAACATTATTGAGGTAGAATTATTTGATGTTTGGGGTATTGAATTTTTCGGTCAT
48168654 TTCCCTCCGTCTTTTGGTCACAAGTACATATTGGTAGCAGTAGACTATATATATAAGTGGGTTGA
66 TTCCCTCCGTCTTTTGGTCACAAGTACATATTGGTAGCAGTAGACTATATATATAAGTGGGTTGA
*
48168719 GGCCGAGTCATAACCGATGAACGATGCTAAGGTTGTGATGAAGTTTTTGTAGAAACATGTGTTCA
131 GGCCGAGGCATAACCGATGAACGATGCTAAGGTTGTGATGAAGTTTTTGTAGAAACATGTGTTCA
* *
48168784 CAATGTTTGGAACTCCTAGGGCCATCATTAGTGATGAGGGGTCCCA-TTTTTTGAACAATTGGTT
196 CAAGGTTTGGAACTCCTAAGGCCATCATTAGTGATGAGGGGTCCCATTTTTTTGAACAATTGGTT
*
48168848 GAAATGGTTACTCGAAAAACATGGAGTGAAGCACAAAGTTGCCACAACTTACCATCCACAACATA
261 GAAATGGTTACTCGAAAAACATGGAGTGAAGCACAAAGTTGCCACAACTTACCATCCACAACAAA
* *
48168913 TCGGTAAGCTAAACTGGAAAACAAAGAGATAAAAGGCATACTCAAGAAGGTACTTTGCCTGAATC
326 TCGGCAAGATAAACTGGAAAACAAAGAGATAAAAGGCATACTCAAGAAGGTACTTTGCCTGAATC
*
48168978 GATGAGATTGGTCCAAAAGACTGGATAATGTTTTATGGGCCTACAAGACAACATACATGATACCT
391 GATGAGATTGGTCCAAAAGACTGGATAATGTTTTATGGGCCTACAAGACAACATACAAGATACCT
48169043 TTAGGGATATCAGCCTATAGGTTGGTTTTTAGGAAAGCCTGCCAACTACCCTTAGAGTTAGAACA
456 TTAGGGATATCAGCCTATAGGTTGGTTTTTAGGAAAGCCTGCCAACTACCCTTAGAGTTAGAACA
*
48169108 CAAAGATTACTGGGCTCTCCAACAATTCAACTTGGATCTTAAGCT
521 CAAAGATTACTGGGCTCTCCAACAATTCAACTTGGATATTAAGCT
48169153 TGC
1 TGC
48169156 TAAAGAGAAA
Statistics
Matches: 551, Mismatches: 16, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
564 317 0.58
565 234 0.42
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.29
Consensus pattern (565 bp):
TGCCCTGAACAAACATTATTGAGGTAGAATTATTTGATGTTTGGGGTATTGAATTTTTCGGTCAT
TTCCCTCCGTCTTTTGGTCACAAGTACATATTGGTAGCAGTAGACTATATATATAAGTGGGTTGA
GGCCGAGGCATAACCGATGAACGATGCTAAGGTTGTGATGAAGTTTTTGTAGAAACATGTGTTCA
CAAGGTTTGGAACTCCTAAGGCCATCATTAGTGATGAGGGGTCCCATTTTTTTGAACAATTGGTT
GAAATGGTTACTCGAAAAACATGGAGTGAAGCACAAAGTTGCCACAACTTACCATCCACAACAAA
TCGGCAAGATAAACTGGAAAACAAAGAGATAAAAGGCATACTCAAGAAGGTACTTTGCCTGAATC
GATGAGATTGGTCCAAAAGACTGGATAATGTTTTATGGGCCTACAAGACAACATACAAGATACCT
TTAGGGATATCAGCCTATAGGTTGGTTTTTAGGAAAGCCTGCCAACTACCCTTAGAGTTAGAACA
CAAAGATTACTGGGCTCTCCAACAATTCAACTTGGATATTAAGCT
Found at i:48172300 original size:23 final size:22
Alignment explanation
Indices: 48172248--48172300 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
48172238 TCCACGTCTT
*
48172248 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
48172270 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
48172293 TTTCTTTT
1 TTTCTTTT
48172301 TCACTCTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:48213806 original size:48 final size:48
Alignment explanation
Indices: 48213735--48214788 Score: 1266
Period size: 48 Copynumber: 21.4 Consensus size: 48
48213725 CAAGATAAAT
* *
48213735 ATATGTGTGTGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
*
48213783 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
*
48213831 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
*
48213879 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
* * *
48213927 ATATGTATATGTGGTAAAGCCAAATGGCTAGTGTGAAATACCGA-ATG-G
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATA--TATATGAG
* * * * * **
48213975 CTAGTGTGAAATAT-GT-ATG-AGATAT-G-TATATGTGGTAAAGCTGA-ATG-G
1 ATA-TGT-ATATGTGGTAAAGCCGA-ATGGCTA-ATGT-G-AAATAT-ATATGAG
* * * *** * * * * *
48214023 CTAGTGTGAAATATGTACG-AGATATGTATATGTGGTAAAGCCG-AATGGCTAGTATGAA
1 ATA-TGT---ATATGT-GGTAAAGCCG-A-ATG-GCTAATG-TGAAAT--ATA-TATGAG
*
48214081 ATATGTACGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAG
1 ATA-----------TGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
*
48214140 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
* * *
48214188 ATATGTATATGTGGTAAATCCGAATGGCTAGTGTGAAATATTTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
* * *
48214236 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTACGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
*
48214284 ATATGTATATGTGGTAAAGCCGAATGGCCGAATGGCTAATATGAAATATATATGAG
1 ATATGTATATGTGGT--A----AA--GCCGAATGGCTAATGTGAAATATATATGAG
* *
48214340 ATACGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
*
48214388 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
* *
48214436 ATATGTATATGTGGTAAAGCCGAATGGCTAATTTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
48214484 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
*
48214532 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
*
48214580 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
*
48214628 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
*
48214676 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
*
48214724 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
48214772 ATATGTATATGTGGTAA
1 ATATGTATATGTGGTAA
48214789 TGTAACACCC
Statistics
Matches: 898, Mismatches: 63, Indels: 90
0.85 0.06 0.09
Matches are distributed among these distances:
46 2 0.00
47 5 0.01
48 768 0.86
49 11 0.01
50 12 0.01
52 1 0.00
53 1 0.00
54 9 0.01
55 1 0.00
56 46 0.05
57 5 0.01
58 2 0.00
59 8 0.01
60 2 0.00
61 1 0.00
62 7 0.01
63 3 0.00
64 2 0.00
65 9 0.01
68 3 0.00
ACGTcount: A:0.35, C:0.07, G:0.27, T:0.31
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
Found at i:48213984 original size:69 final size:69
Alignment explanation
Indices: 48213898--48214035 Score: 249
Period size: 69 Copynumber: 2.0 Consensus size: 69
48213888 TGTGGTAAAG
48213898 CCGAATGGCTAGTGTGAAATATATATGAGATATGTATATGTGGTAAAGCCAAATGGCTAGTGTGA
1 CCGAATGGCTAGTGTGAAATATATATGAGATATGTATATGTGGTAAAGCCAAATGGCTAGTGTGA
48213963 AATA
66 AATA
* **
48213967 CCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCTGAATGGCTAGTGTGA
1 CCGAATGGCTAGTGTGAAATATATATGAGATATGTATATGTGGTAAAGCCAAATGGCTAGTGTGA
48214032 AATA
66 AATA
48214036 TGTACGAGAT
Statistics
Matches: 66, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
69 66 1.00
ACGTcount: A:0.35, C:0.08, G:0.28, T:0.30
Consensus pattern (69 bp):
CCGAATGGCTAGTGTGAAATATATATGAGATATGTATATGTGGTAAAGCCAAATGGCTAGTGTGA
AATA
Found at i:48214048 original size:165 final size:165
Alignment explanation
Indices: 48213802--48214131 Score: 588
Period size: 165 Copynumber: 2.0 Consensus size: 165
48213792 TGTGGTAAAG
48213802 CCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
1 CCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
* * *
48213867 AATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATG
66 AATATGTACGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTATGAAATATATACGAGATATG
48213932 TATATGTGGTAAAGCCAAATGGCTAGTGTGAAATA
131 TATATGTGGTAAAGCCAAATGGCTAGTGTGAAATA
* * *
48213967 CCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCTGAATGGCTAGTGTGA
1 CCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
*
48214032 AATATGTACGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTATGAAATATGTACGAGATATG
66 AATATGTACGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTATGAAATATATACGAGATATG
*
48214097 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATA
131 TATATGTGGTAAAGCCAAATGGCTAGTGTGAAATA
48214132 TATATGAGAT
Statistics
Matches: 157, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
165 157 1.00
ACGTcount: A:0.35, C:0.08, G:0.28, T:0.30
Consensus pattern (165 bp):
CCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
AATATGTACGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTATGAAATATATACGAGATATG
TATATGTGGTAAAGCCAAATGGCTAGTGTGAAATA
Found at i:48214121 original size:213 final size:213
Alignment explanation
Indices: 48213754--48214179 Score: 762
Period size: 213 Copynumber: 2.0 Consensus size: 213
48213744 TGTGGTAAAG
48213754 CCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
1 CCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
* * *
48213819 AATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
66 AATATGTACGAGATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTACGAGATATG
48213884 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATATGTGGTAAAGCCA
131 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATATGTGGTAAAGCCA
*
48213949 AATGGCTAGTGTGAAATA
196 AATGGCTAATGTGAAATA
* * * *
48213967 CCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCTGAATGGCTAGTGTGA
1 CCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
*
48214032 AATATGTACGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTATGAAATATGTACGAGATATG
66 AATATGTACGAGATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTACGAGATATG
*
48214097 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATATGTGGTAAAGCCG
131 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATATGTGGTAAAGCCA
48214162 AATGGCTAATGTGAAATA
196 AATGGCTAATGTGAAATA
48214180 TGTATGAGAT
Statistics
Matches: 203, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
213 203 1.00
ACGTcount: A:0.35, C:0.07, G:0.27, T:0.30
Consensus pattern (213 bp):
CCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
AATATGTACGAGATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTACGAGATATG
TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATATGTGGTAAAGCCA
AATGGCTAATGTGAAATA
Found at i:48215649 original size:37 final size:37
Alignment explanation
Indices: 48215590--48215698 Score: 173
Period size: 37 Copynumber: 2.9 Consensus size: 37
48215580 AGCTCAGATG
** *
48215590 AAATCTCCACACAAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
48215627 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
48215664 TAATCTCCAAACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
48215699 ATATATTTCC
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.28, C:0.30, G:0.18, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:48215900 original size:48 final size:48
Alignment explanation
Indices: 48215845--48215993 Score: 271
Period size: 48 Copynumber: 3.1 Consensus size: 48
48215835 ACACATCGCC
* *
48215845 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACTTATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
48215893 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
48215941 TACATATTTCACATTATCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
48215989 TACAT
1 TACAT
48215994 CAATTTCCGC
Statistics
Matches: 98, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 98 1.00
ACGTcount: A:0.31, C:0.28, G:0.05, T:0.36
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:48218623 original size:48 final size:48
Alignment explanation
Indices: 48218567--48219034 Score: 805
Period size: 48 Copynumber: 9.8 Consensus size: 48
48218557 GGGTGTCACA
* *
48218567 GGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGT
1 GGTAAAGCCGAATGGCTAGTGTGAAATATGTACGAGATATGTATATGT
48218615 GGTAAAGCCGAATGGCTAGTGTGAAATATGTACGAGATATGTATATGT
1 GGTAAAGCCGAATGGCTAGTGTGAAATATGTACGAGATATGTATATGT
*
48218663 GGTAAAGCCGAATGGCTAGTGTGAAATATATA--AGATATGTATATGT
1 GGTAAAGCCGAATGGCTAGTGTGAAATATGTACGAGATATGTATATGT
* *
48218709 GGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATATGT
1 GGTAAAGCCGAATGGCTAGTGTGAAATATGTACGAGATATGTATATGT
48218757 GGTAAAGCCGAATGGCTAGTGTGAAATATGTACGAGATATGTATATGT
1 GGTAAAGCCGAATGGCTAGTGTGAAATATGTACGAGATATGTATATGT
48218805 GGTAAAGCCGAATGGCTAGTGTGAAATATGTACGAGATATGTATATGT
1 GGTAAAGCCGAATGGCTAGTGTGAAATATGTACGAGATATGTATATGT
48218853 GGTAAAGCCGAATGGCTAGTGTGAAATATGTACGAGATATGTATATGT
1 GGTAAAGCCGAATGGCTAGTGTGAAATATGTACGAGATATGTATATGT
*
48218901 GGTAAAGCCGAATGGCTAATGTGAAATATGTACGAGATATGTATATGT
1 GGTAAAGCCGAATGGCTAGTGTGAAATATGTACGAGATATGTATATGT
* * * *
48218949 GGTAAAGCTGAATGGCTAGTGTGAAATATGAATGAGATATGTATGTGT
1 GGTAAAGCCGAATGGCTAGTGTGAAATATGTACGAGATATGTATATGT
* * *
48218997 GGTAAAGCCGAATGGCTAGCGTGAAACATGTAGGAGAT
1 GGTAAAGCCGAATGGCTAGTGTGAAATATGTACGAGAT
48219035 GTGTGTATAT
Statistics
Matches: 402, Mismatches: 16, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
46 46 0.11
48 356 0.89
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (48 bp):
GGTAAAGCCGAATGGCTAGTGTGAAATATGTACGAGATATGTATATGT
Found at i:48219216 original size:37 final size:37
Alignment explanation
Indices: 48219175--48219313 Score: 242
Period size: 37 Copynumber: 3.8 Consensus size: 37
48219165 GGAAATATAT
*
48219175 TCCGGGTAAGACCCGATGACTACGTTTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
*
48219212 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
*
48219249 TCCGGGTAGGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
*
48219286 TCCGGGTAAGACCCGATAACTACGTGTG
1 TCCGGGTAAGACCCGATGACTACGTGTG
48219314 TGGACTATTC
Statistics
Matches: 96, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 96 1.00
ACGTcount: A:0.22, C:0.20, G:0.32, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:48226827 original size:5 final size:5
Alignment explanation
Indices: 48226817--48226856 Score: 80
Period size: 5 Copynumber: 8.0 Consensus size: 5
48226807 GATACCAACC
48226817 ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA
1 ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA
48226857 TTTTTATTTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 35 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
ATAAA
Found at i:48231597 original size:39 final size:37
Alignment explanation
Indices: 48231537--48231634 Score: 96
Period size: 34 Copynumber: 2.7 Consensus size: 37
48231527 AAATACAATC
* * *
48231537 TGGGCCTAAGCCCGTTTCAGTAACAGTCCAGTAACAGT-
1 TGGGCCTTAGCCCATTACAGTAACA-T-CAGTAACAGTG
*
48231575 TAGGGCCTTAGCCCATTACAGT---ATCAGTAGCAGTG
1 T-GGGCCTTAGCCCATTACAGTAACATCAGTAACAGTG
*
48231610 TGGACCTTAGCCCATTACAGTAACA
1 TGGGCCTTAGCCCATTACAGTAACA
48231635 ATAACAGAAA
Statistics
Matches: 50, Mismatches: 5, Indels: 11
0.76 0.08 0.17
Matches are distributed among these distances:
34 28 0.56
35 2 0.04
36 1 0.02
37 1 0.02
38 1 0.02
39 17 0.34
ACGTcount: A:0.28, C:0.26, G:0.22, T:0.24
Consensus pattern (37 bp):
TGGGCCTTAGCCCATTACAGTAACATCAGTAACAGTG
Found at i:48231603 original size:34 final size:34
Alignment explanation
Indices: 48231565--48231641 Score: 102
Period size: 34 Copynumber: 2.3 Consensus size: 34
48231555 AGTAACAGTC
* *
48231565 CAGTAACAGT-TAGGGCCTTAGCCCATTACAGTAT
1 CAGTAACAGTGT-GGACCTTAGCCCATTACAGTAA
*
48231599 CAGTAGCAGTGTGGACCTTAGCCCATTACAGTAA
1 CAGTAACAGTGTGGACCTTAGCCCATTACAGTAA
*
48231633 CAATAACAG
1 CAGTAACAG
48231642 AAATGCAATC
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
34 36 0.97
35 1 0.03
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.23
Consensus pattern (34 bp):
CAGTAACAGTGTGGACCTTAGCCCATTACAGTAA
Found at i:48234523 original size:42 final size:43
Alignment explanation
Indices: 48234467--48234560 Score: 113
Period size: 42 Copynumber: 2.2 Consensus size: 43
48234457 GATATTTATG
* * *
48234467 TGTAAGACCGTGTCTGGGAC-GTCAGCATCG-T-TTATGATTTCA
1 TGTAAGACCCTGTCTCGGACAGT-AGCATCGATATT-TGATTACA
*
48234509 TGTAAGACCCTGTCTCGGACAGTGGCATCGATATTTGATTACA
1 TGTAAGACCCTGTCTCGGACAGTAGCATCGATATTTGATTACA
48234552 TGTAAGACC
1 TGTAAGACC
48234561 ACGTTTCGGA
Statistics
Matches: 45, Mismatches: 4, Indels: 5
0.83 0.07 0.09
Matches are distributed among these distances:
42 24 0.53
43 19 0.42
44 2 0.04
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.31
Consensus pattern (43 bp):
TGTAAGACCCTGTCTCGGACAGTAGCATCGATATTTGATTACA
Found at i:48234559 original size:43 final size:42
Alignment explanation
Indices: 48234467--48234573 Score: 112
Period size: 43 Copynumber: 2.5 Consensus size: 42
48234457 GATATTTATG
* * *
48234467 TGTAAGACCGTGTCTGGGACGTCAGCATCGTTTATGATTTCA
1 TGTAAGACCCTGTCTCGGACGTCAGCATCGTTTATGATTACA
*
48234509 TGTAAGACCCTGTCTCGGACAGT-GGCATCGATATT-TGATTACA
1 TGTAAGACCCTGTCTCGGAC-GTCAGCATCG-T-TTATGATTACA
*
48234552 TGTAAGACCAC-GTTTCGGACGT
1 TGTAAGACC-CTGTCTCGGACGT
48234574 TGGCATTGTA
Statistics
Matches: 56, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
42 26 0.46
43 27 0.48
44 3 0.05
ACGTcount: A:0.23, C:0.21, G:0.25, T:0.31
Consensus pattern (42 bp):
TGTAAGACCCTGTCTCGGACGTCAGCATCGTTTATGATTACA
Found at i:48239901 original size:11 final size:12
Alignment explanation
Indices: 48239876--48239907 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
48239866 AAACCATTCC
*
48239876 TTTCCCTTTCTT
1 TTTCCTTTTCTT
48239888 TTTCCTTTTCTT
1 TTTCCTTTTCTT
48239900 TTTCCTTT
1 TTTCCTTT
48239908 ACATAGATGC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (12 bp):
TTTCCTTTTCTT
Found at i:48246590 original size:53 final size:53
Alignment explanation
Indices: 48246510--48246614 Score: 147
Period size: 53 Copynumber: 2.0 Consensus size: 53
48246500 TTCCTTTTTA
* ** *
48246510 AACTTACCATTGCCATTTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG
1 AACTCACCATTGCCATGCCTTGACATGGTCTTACATGGGATCCTTGCCTTATG
* * *
48246563 AACTCACCATTGTCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTAT
1 AACTCACCATTGCCATGCCTTGACATGGTCTTACATGGGATCCTTGCCTTAT
48246615 CGTAGTTTAT
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
53 45 1.00
ACGTcount: A:0.20, C:0.25, G:0.17, T:0.38
Consensus pattern (53 bp):
AACTCACCATTGCCATGCCTTGACATGGTCTTACATGGGATCCTTGCCTTATG
Found at i:48249174 original size:43 final size:44
Alignment explanation
Indices: 48249104--48249187 Score: 143
Period size: 43 Copynumber: 1.9 Consensus size: 44
48249094 GGTCAAATAT
48249104 TATTAAAATAACTTACACTAATCAGAGTTTAAGTAGGAAACCAA
1 TATTAAAATAACTTACACTAATCAGAGTTTAAGTAGGAAACCAA
* *
48249148 TATTAAAATAAC-TACACTAATTAGAGTTTAAGTGGGAAAC
1 TATTAAAATAACTTACACTAATCAGAGTTTAAGTAGGAAAC
48249188 TAAAAATAGA
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
43 26 0.68
44 12 0.32
ACGTcount: A:0.46, C:0.12, G:0.13, T:0.29
Consensus pattern (44 bp):
TATTAAAATAACTTACACTAATCAGAGTTTAAGTAGGAAACCAA
Found at i:48249217 original size:25 final size:25
Alignment explanation
Indices: 48249169--48249218 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
48249159 CTACACTAAT
* *
48249169 TAGAGTTTAAGTGGGAAACTAAAAA
1 TAGAGTTTAACTGGGAAACGAAAAA
48249194 TAGAGTTTAACTGGGAGAA-GAAAAA
1 TAGAGTTTAACTGGGA-AACGAAAAA
48249219 CCAAAAACTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 20 0.91
26 2 0.09
ACGTcount: A:0.48, C:0.04, G:0.26, T:0.22
Consensus pattern (25 bp):
TAGAGTTTAACTGGGAAACGAAAAA
Found at i:48255789 original size:138 final size:138
Alignment explanation
Indices: 48255538--48255801 Score: 456
Period size: 138 Copynumber: 1.9 Consensus size: 138
48255528 TATATTTTGG
* * * *
48255538 AAAGAATATTAATTTCCATGTCTTTTATATTTTGACCGAAATTAATTAATATAACTGTTTATGTT
1 AAAGAATATTAATTTCCATGGCTTTTATATTTTGACAGAAATTAATTAAGATAACTGTTTATATT
* *
48255603 AATAAATTTAGTAAAATATATACAATTAATATTTTGTATGAATTAAATTCATATATTAATTATAT
66 AATAAATTCAGTAAAATATATACAATTAATATTTTGTATGAATCAAATTCATATATTAATTATAT
48255668 TCTTTCCA
131 TCTTTCCA
*
48255676 AAAGAATATTAATTTCCATGGCTTTTATATTTTGACAGAAATTAATTAAGATAATTGTTTATATT
1 AAAGAATATTAATTTCCATGGCTTTTATATTTTGACAGAAATTAATTAAGATAACTGTTTATATT
*
48255741 AATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAAATTCATATATTAATT
66 AATAAATTCAGTAAAATATATACAATTAATATTTTGTATGAATCAAATTCATATATTAATT
48255802 TTATCTATGT
Statistics
Matches: 118, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
138 118 1.00
ACGTcount: A:0.41, C:0.07, G:0.08, T:0.44
Consensus pattern (138 bp):
AAAGAATATTAATTTCCATGGCTTTTATATTTTGACAGAAATTAATTAAGATAACTGTTTATATT
AATAAATTCAGTAAAATATATACAATTAATATTTTGTATGAATCAAATTCATATATTAATTATAT
TCTTTCCA
Found at i:48261132 original size:29 final size:28
Alignment explanation
Indices: 48261100--48261158 Score: 64
Period size: 28 Copynumber: 2.1 Consensus size: 28
48261090 CTTGTTTTTC
*
48261100 TTCTCTAATTATTTTTTTAAAATAGGATT
1 TTCTCTAATTA-TATTTTAAAATAGGATT
* * * *
48261129 TTCTTTTATTATATTTTATAATAGGTTT
1 TTCTCTAATTATATTTTAAAATAGGATT
48261157 TT
1 TT
48261159 TTTTATTTTT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
28 16 0.64
29 9 0.36
ACGTcount: A:0.27, C:0.05, G:0.07, T:0.61
Consensus pattern (28 bp):
TTCTCTAATTATATTTTAAAATAGGATT
Found at i:48276327 original size:79 final size:82
Alignment explanation
Indices: 48276216--48276400 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 82
48276206 GCTCCTCGTT
* *
48276216 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
48276279 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
48276296 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
48276359 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
48276376 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
48276401 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:48276400 original size:40 final size:40
Alignment explanation
Indices: 48276216--48276400 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
48276206 GCTCCTCGTT
* *
48276216 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
48276256 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
48276296 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
48276335 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
48276376 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
48276401 CATCATTCAA
Statistics
Matches: 126, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
38 2 0.02
39 32 0.25
40 80 0.63
41 12 0.10
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:48281365 original size:33 final size:33
Alignment explanation
Indices: 48281319--48281429 Score: 177
Period size: 33 Copynumber: 3.4 Consensus size: 33
48281309 TACTCTCTTT
* *
48281319 TTGGTGTGCTGGTTGGATTAGCTTTTATGAGCA
1 TTGGTGTGATGGTTGGATTAGCTCTTATGAGCA
* * *
48281352 TAGGTGTGATGGTTGGTTTAGCTCTTATGAACA
1 TTGGTGTGATGGTTGGATTAGCTCTTATGAGCA
48281385 TTGGTGTGATGGTTGGATTAGCTCTTATGAGCA
1 TTGGTGTGATGGTTGGATTAGCTCTTATGAGCA
48281418 TTGGTGTGATGG
1 TTGGTGTGATGG
48281430 ATGTATTGGC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 70 1.00
ACGTcount: A:0.17, C:0.08, G:0.34, T:0.41
Consensus pattern (33 bp):
TTGGTGTGATGGTTGGATTAGCTCTTATGAGCA
Found at i:48281449 original size:33 final size:33
Alignment explanation
Indices: 48281319--48281451 Score: 133
Period size: 33 Copynumber: 4.0 Consensus size: 33
48281309 TACTCTCTTT
* * * *
48281319 TTGGTGTGCTGGTTGGATTAGCTTTTATGAGCA
1 TTGGTGTGATGGATGGATTAGCTCTGATGAGCA
* * * * *
48281352 TAGGTGTGATGGTTGGTTTAGCTCTTATGAACA
1 TTGGTGTGATGGATGGATTAGCTCTGATGAGCA
* *
48281385 TTGGTGTGATGGTTGGATTAGCTCTTATGAGCA
1 TTGGTGTGATGGATGGATTAGCTCTGATGAGCA
* *
48281418 TTGGTGTGATGGATGTATTGGCTC-GAGTGAGCA
1 TTGGTGTGATGGATGGATTAGCTCTGA-TGAGCA
48281451 T
1 T
48281452 CTTGTGTGTT
Statistics
Matches: 87, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
32 1 0.01
33 86 0.99
ACGTcount: A:0.18, C:0.09, G:0.34, T:0.39
Consensus pattern (33 bp):
TTGGTGTGATGGATGGATTAGCTCTGATGAGCA
Found at i:48283137 original size:25 final size:27
Alignment explanation
Indices: 48283100--48283152 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
48283090 TCAAACATGC
48283100 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
48283126 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
48283152 A
1 A
48283153 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:48284726 original size:26 final size:26
Alignment explanation
Indices: 48284628--48284731 Score: 154
Period size: 26 Copynumber: 4.0 Consensus size: 26
48284618 ATTCCCATCT
**
48284628 TGGAACATTTACCTAAATCATTATCA
1 TGGAACATTTACCTAACCCATTATCA
48284654 TGGAACATTTACCTAACCCATTATCA
1 TGGAACATTTACCTAACCCATTATCA
* *
48284680 TGGAATATTTACCTAATCCATTATCA
1 TGGAACATTTACCTAACCCATTATCA
* *
48284706 TGGAACAATTATCTAACCCATTATCA
1 TGGAACATTTACCTAACCCATTATCA
48284732 ATTTGTACCA
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 70 1.00
ACGTcount: A:0.37, C:0.22, G:0.08, T:0.34
Consensus pattern (26 bp):
TGGAACATTTACCTAACCCATTATCA
Found at i:48285441 original size:12 final size:12
Alignment explanation
Indices: 48285424--48285453 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
48285414 TCAGGCTGTT
48285424 ACACGGCCTAGC
1 ACACGGCCTAGC
*
48285436 ACACGGCCTGGC
1 ACACGGCCTAGC
48285448 ACACGG
1 ACACGG
48285454 GCGTGTGAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.23, C:0.40, G:0.30, T:0.07
Consensus pattern (12 bp):
ACACGGCCTAGC
Found at i:48286905 original size:43 final size:43
Alignment explanation
Indices: 48286802--48286906 Score: 138
Period size: 44 Copynumber: 2.4 Consensus size: 43
48286792 TTTGAGTTGC
* *
48286802 TTCCACGTAGCTTTCTTTTTTGTCATTTCTTGGTAGTGATTTT
1 TTCCACGTAGCTTCCTCTTTTGTCATTTCTTGGTAGTGATTTT
* ** *
48286845 TTCCTACATATTTTCCTCTTTTGTCGTTTCTTGGTAGTGATTTT
1 TTCC-ACGTAGCTTCCTCTTTTGTCATTTCTTGGTAGTGATTTT
*
48286889 TTTCACGTAGCTTCCTCT
1 TTCCACGTAGCTTCCTCT
48286907 GTTTTTTATG
Statistics
Matches: 51, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
43 15 0.29
44 36 0.71
ACGTcount: A:0.11, C:0.20, G:0.14, T:0.54
Consensus pattern (43 bp):
TTCCACGTAGCTTCCTCTTTTGTCATTTCTTGGTAGTGATTTT
Found at i:48288311 original size:12 final size:12
Alignment explanation
Indices: 48288294--48288318 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
48288284 ATGTAAGTGA
48288294 TCTTGATGATTT
1 TCTTGATGATTT
48288306 TCTTGATGATTT
1 TCTTGATGATTT
48288318 T
1 T
48288319 TACATTTTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.08, G:0.16, T:0.60
Consensus pattern (12 bp):
TCTTGATGATTT
Found at i:48288889 original size:21 final size:20
Alignment explanation
Indices: 48288861--48288902 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
48288851 GTTGTATATA
48288861 AATAATATAACTACATTGTC
1 AATAATATAACTACATTGTC
* *
48288881 AATACATATAATTGCATTGTC
1 AATA-ATATAACTACATTGTC
48288902 A
1 A
48288903 TTGAATTGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 4 0.21
21 15 0.79
ACGTcount: A:0.43, C:0.14, G:0.07, T:0.36
Consensus pattern (20 bp):
AATAATATAACTACATTGTC
Found at i:48289401 original size:49 final size:50
Alignment explanation
Indices: 48289038--48289410 Score: 296
Period size: 50 Copynumber: 7.7 Consensus size: 50
48289028 AATTTGTGTA
* * *
48289038 CCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTG-AG-ACGAGTG
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCAGCATAGAAGTACGAGAG
** * * * *
48289086 CCAGTGTAAGA-CATGTCCAGGACAT-GCATCGGCCTCG-AG-ACGTA-AA
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCAGCATAGAAGTACG-AGAG
* * * *
48289132 CCAGTGTAAGA-TATGTCTGGGACAT-GTATCTGC-TATG-AG-AC-A-TG
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCAGCATA-GAAGTACGAGAG
* * *
48289176 TCAGTGTAAGACCATGTCTGGGACATGGCATC-GACATAGATA-TGCAAGAG
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCAG-CATAGA-AGTACGAGAG
* * *
48289226 CTAGTGTAAGACCATGTTTGGGACATGACATCAGCAT-GTAAGTACGAGAG
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCAGCATAG-AAGTACGAGAG
* * *
48289276 CTAGTGTAAGACCATGTCTGGGACATGACATCAGCATATAAGTACGAGAG
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCAGCATAGAAGTACGAGAG
* * * * * ** *
48289326 CTAGTGTAAGACCATGTCTGGAACATGGCATCAGCCTCGATG-GGGATAG
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCAGCATAGAAGTACGAGAG
*
48289375 CCAGTTTAAGACCATGTCTGGGACATGGCATCAGCA
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCAGCA
48289411 ACTTAACCAT
Statistics
Matches: 270, Mismatches: 40, Indels: 29
0.80 0.12 0.09
Matches are distributed among these distances:
44 11 0.04
45 15 0.06
46 54 0.20
47 15 0.06
48 13 0.05
49 39 0.14
50 122 0.45
51 1 0.00
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (50 bp):
CCAGTGTAAGACCATGTCTGGGACATGGCATCAGCATAGAAGTACGAGAG
Found at i:48296813 original size:45 final size:46
Alignment explanation
Indices: 48296701--48297073 Score: 215
Period size: 50 Copynumber: 7.8 Consensus size: 46
48296691 GTAATTTGTG
* * * *
48296701 TGCCAGTGTATGACCATGTCTGGGACATGGCATCGACATTGAGACGA
1 TGCC-GTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGACGA
48296748 GTGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGACGTA
1 -TGCC-GTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGACG-A
*
48296795 AGCCGTGTAAGA-CATGTCTGGGACAT-GCATCGG-CTACGAGAC-A
1 TGCCGTGTAAGACCATGTCTGGGACATGGCATCGGCCT-CGAGACGA
** * * * *
48296838 TGTCAATGTAAGACCATGTCTGGGACATGGCATCGACATGGATATGCAAGA
1 TG-CCGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCG--A-G-ACGA
* * ** * **
48296889 -GCTAGTTTAAGACCATGTCTGGGACATGTTATCAGTAT-GTAAGTACGA
1 TGC-CGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCG--AG-ACGA
* * * * *
48296937 GAGCTAGTGTAAGACCATGTCTAGGACATGGCATCAGCAT-GTAAGCACGA
1 -TGC-CGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCG--AG-ACGA
* * * *
48296987 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTTGATGAGGA
1 -TGC-CGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGA-GACGA
*
48297036 TAGCCAATGTAAGACCATGTCTGGGACATGGCATCGGC
1 T-GCC-GTGTAAGACCATGTCTGGGACATGGCATCGGC
48297074 AACTTAACCC
Statistics
Matches: 271, Mismatches: 36, Indels: 35
0.79 0.11 0.10
Matches are distributed among these distances:
43 2 0.01
44 10 0.04
45 49 0.18
46 24 0.09
47 16 0.06
48 17 0.06
49 41 0.15
50 110 0.41
51 2 0.01
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (46 bp):
TGCCGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGACGA
Found at i:48296910 original size:50 final size:51
Alignment explanation
Indices: 48296844--48297071 Score: 222
Period size: 50 Copynumber: 4.6 Consensus size: 51
48296834 GACATGTCAA
48296844 TGTAAGACCATGTCTGGGACATGGCATCGA-CATGGATATGCAAGAGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGAGCATGGATATGCAAGAGCTAG
* ** * * * *
48296894 TTTAAGACCATGTCTGGGACATGTTATC-AGTATGTA-AGTACGAGAGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGAGCATGGATA-TGCAAGAGCTAG
* *
48296944 TGTAAGACCATGTCTAGGACATGGCATC-AGCAT-G-TAAGCACGAGAGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGAGCATGGATATGCA--AGAGCTAG
* * * * * *
48296994 TGTAAGACCATGTCTGGGACATGGCATCG-GCCTTGATGA-G-GATAGCCAA
1 TGTAAGACCATGTCTGGGACATGGCATCGAGCATGGAT-ATGCAAGAGCTAG
48297043 TGTAAGACCATGTCTGGGACATGGCATCG
1 TGTAAGACCATGTCTGGGACATGGCATCG
48297072 GCAACTTAAC
Statistics
Matches: 147, Mismatches: 22, Indels: 19
0.78 0.12 0.10
Matches are distributed among these distances:
48 1 0.01
49 37 0.25
50 105 0.71
51 1 0.01
52 2 0.01
53 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (51 bp):
TGTAAGACCATGTCTGGGACATGGCATCGAGCATGGATATGCAAGAGCTAG
Found at i:48297882 original size:13 final size:13
Alignment explanation
Indices: 48297864--48297888 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
48297854 TGGGTAGAGA
48297864 CTCAGCCGTGTGT
1 CTCAGCCGTGTGT
48297877 CTCAGCCGTGTG
1 CTCAGCCGTGTG
48297889 GAGGGCACGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.32, G:0.32, T:0.28
Consensus pattern (13 bp):
CTCAGCCGTGTGT
Found at i:48299205 original size:76 final size:74
Alignment explanation
Indices: 48299083--48299466 Score: 324
Period size: 76 Copynumber: 5.1 Consensus size: 74
48299073 GTAACAAAGT
* * * * * * *
48299083 TTTGCACCCAGCACTAGTCGGATAAATTGACGATATCAAATG-TGTGCCCATTGCTAGCCGGATA
1 TTTGCGCCCAGCGCTAGTCGGATAACTCGACGATATTAAA-GATGTGCCCA--GCTAGTCAGATA
* *
48299147 AACCAACAACAA
63 AACCGACAACGA
* *
48299159 TTTGCGCCCAGCGCTAGTCGGATAACTCGATGATATTAAAGATGTGCCCAACAGTAGTCAGATAA
1 TTTGCGCCCAGCGCTAGTCGGATAACTCGACGATATTAAAGATGTGCCCAGC--TAGTCAGATAA
*
48299224 ACTGACAACGA
64 ACCGACAACGA
* * * *
48299235 TTTACGCCCAACGCTAGTCGGATAACCCAACGATATTAAAGATGTGCCCAGCACTAGTCAGATAA
1 TTTGCGCCCAGCGCTAGTCGGATAACTCGACGATATTAAAGATGTGCCCAG--CTAGTCAGATAA
*
48299300 ACCGACAATGA
64 ACCGACAACGA
* * * * * ** * **
48299311 TTTACGCCCAGTGTTAGTCAGATAAAC-CAACTTTATTAAAAATGTGCCCAGCAATAGTTGGATA
1 TTTGCGCCCAGCGCTAGTCGGAT-AACTCGACGATATTAAAGATGTGCCCAGC--TAGTCAGATA
*
48299375 AACCGACAATGA
63 AACCGACAACGA
* * *
48299387 TTTGTGCCCAGCGCTAGTCGGATAAACT-GACGATATTAAAAATGTGCCCAGCACTAGTCGGATA
1 TTTGCGCCCAGCGCTAGTCGGAT-AACTCGACGATATTAAAGATGTGCCCAG--CTAGTCAGATA
** *
48299451 AAATGACAATGA
63 AACCGACAACGA
48299463 TTTG
1 TTTG
48299467 ATACAAAATT
Statistics
Matches: 257, Mismatches: 40, Indels: 22
0.81 0.13 0.07
Matches are distributed among these distances:
74 2 0.01
75 1 0.00
76 249 0.97
77 3 0.01
78 2 0.01
ACGTcount: A:0.34, C:0.22, G:0.20, T:0.23
Consensus pattern (74 bp):
TTTGCGCCCAGCGCTAGTCGGATAACTCGACGATATTAAAGATGTGCCCAGCTAGTCAGATAAAC
CGACAACGA
Found at i:48299292 original size:40 final size:40
Alignment explanation
Indices: 48299248--48299452 Score: 151
Period size: 40 Copynumber: 5.3 Consensus size: 40
48299238 ACGCCCAACG
* * *
48299248 CTAGTCGGATAACCCAACGATATTAAAGATGTGCCCAGCA
1 CTAGTCGGATAAACCGACGATATTAAAAATGTGCCCAGCA
* * ** **
48299288 CTAGTCAGATAAACCGACAATGATT-----TACGCCCAGTG
1 CTAGTCGGATAAACCGACGAT-ATTAAAAATGTGCCCAGCA
* * * **
48299324 TTAGTCAGATAAACCAACTTTATTAAAAATGTGCCCAGCA
1 CTAGTCGGATAAACCGACGATATTAAAAATGTGCCCAGCA
* * * *
48299364 ATAGTTGGATAAACCGACAATGATT-----TGTGCCCAGCG
1 CTAGTCGGATAAACCGACGAT-ATTAAAAATGTGCCCAGCA
*
48299400 CTAGTCGGATAAACTGACGATATTAAAAATGTGCCCAGCA
1 CTAGTCGGATAAACCGACGATATTAAAAATGTGCCCAGCA
48299440 CTAGTCGGATAAA
1 CTAGTCGGATAAA
48299453 ATGACAATGA
Statistics
Matches: 125, Mismatches: 28, Indels: 24
0.71 0.16 0.14
Matches are distributed among these distances:
35 6 0.05
36 51 0.41
40 62 0.50
41 6 0.05
ACGTcount: A:0.36, C:0.21, G:0.20, T:0.23
Consensus pattern (40 bp):
CTAGTCGGATAAACCGACGATATTAAAAATGTGCCCAGCA
Found at i:48299375 original size:152 final size:152
Alignment explanation
Indices: 48299192--48299465 Score: 395
Period size: 152 Copynumber: 1.8 Consensus size: 152
48299182 AACTCGATGA
* * *
48299192 TATTAAAGATGTGCCCAACAGTAGTCAGATAAACTGACAACGATTTACGCCCAACGCTAGTCGGA
1 TATTAAAAATGTGCCCAACAATAGTCAGATAAACCGACAACGATTTACGCCCAACGCTAGTCGGA
* * *
48299257 TAACCCAACGATATTAAAGATGTGCCCAGCACTAGTCAGATAAACCGACAATGATTTACGCCCAG
66 TAAACCAACGATATTAAAAATGTGCCCAGCACTAGTCAGATAAAACGACAATGATTTACGCCCAG
48299322 TGTTAGTCAGATAAACCAACTT
131 TGTTAGTCAGATAAACCAACTT
* ** * ** *
48299344 TATTAAAAATGTGCCCAGCAATAGTTGGATAAACCGACAATGATTTGTGCCCAGCGCTAGTCGGA
1 TATTAAAAATGTGCCCAACAATAGTCAGATAAACCGACAACGATTTACGCCCAACGCTAGTCGGA
** * *
48299409 TAAACTGACGATATTAAAAATGTGCCCAGCACTAGTCGGATAAAATGACAATGATTT
66 TAAACCAACGATATTAAAAATGTGCCCAGCACTAGTCAGATAAAACGACAATGATTT
48299466 GATACAAAAT
Statistics
Matches: 105, Mismatches: 17, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
152 105 1.00
ACGTcount: A:0.36, C:0.21, G:0.19, T:0.24
Consensus pattern (152 bp):
TATTAAAAATGTGCCCAACAATAGTCAGATAAACCGACAACGATTTACGCCCAACGCTAGTCGGA
TAAACCAACGATATTAAAAATGTGCCCAGCACTAGTCAGATAAAACGACAATGATTTACGCCCAG
TGTTAGTCAGATAAACCAACTT
Found at i:48299410 original size:36 final size:36
Alignment explanation
Indices: 48299277--48299466 Score: 123
Period size: 36 Copynumber: 5.1 Consensus size: 36
48299267 ATATTAAAGA
*
48299277 TGTGCCCAGCACTAGTCAGATAAACCGACAATGATT
1 TGTGCCCAGCACTAGTCGGATAAACCGACAATGATT
** *** * * * *
48299313 TACGCCCAGTGTTAGTCAGATAAACCAAC-TTTATT
1 TGTGCCCAGCACTAGTCGGATAAACCGACAATGATT
* *
48299348 AAAAATGTGCCCAGCAATAGTTGGATAAACCGACAATGATT
1 -----TGTGCCCAGCACTAGTCGGATAAACCGACAATGATT
* * *
48299389 TGTGCCCAGCGCTAGTCGGATAAACTGACGAT-ATT
1 TGTGCCCAGCACTAGTCGGATAAACCGACAATGATT
**
48299424 AAAAATGTGCCCAGCACTAGTCGGATAAAATGACAATGATT
1 -----TGTGCCCAGCACTAGTCGGATAAACCGACAATGATT
48299465 TG
1 TG
48299467 ATACAAAATT
Statistics
Matches: 116, Mismatches: 26, Indels: 24
0.70 0.16 0.14
Matches are distributed among these distances:
35 7 0.06
36 52 0.45
40 50 0.43
41 7 0.06
ACGTcount: A:0.35, C:0.21, G:0.20, T:0.25
Consensus pattern (36 bp):
TGTGCCCAGCACTAGTCGGATAAACCGACAATGATT
Found at i:48309042 original size:25 final size:23
Alignment explanation
Indices: 48308993--48309045 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 23
48308983 TTTGGCTTGA
*
48308993 TTATGGATATGTTTATGAGTGAG
1 TTATGGATAAGTTTATGAGTGAG
48309016 TTATGGTATAAGTTATATGA-TGAAG
1 TTATGG-ATAAGTT-TATGAGTG-AG
48309041 TTATG
1 TTATG
48309046 TTTATGACAT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
23 6 0.23
24 8 0.31
25 12 0.46
ACGTcount: A:0.30, C:0.00, G:0.26, T:0.43
Consensus pattern (23 bp):
TTATGGATAAGTTTATGAGTGAG
Found at i:48312506 original size:16 final size:15
Alignment explanation
Indices: 48312485--48312535 Score: 50
Period size: 16 Copynumber: 3.1 Consensus size: 15
48312475 TGCAATTTGG
48312485 TTTATTTAATTTTCTT
1 TTTATTT-ATTTTCTT
48312501 TTTATTTATTTAT-TT
1 TTTATTTATTT-TCTT
48312516 ATTTATTGTGATTTTCTT
1 -TTTATT-T-ATTTTCTT
48312534 TT
1 TT
48312536 CAGCTATTTA
Statistics
Matches: 30, Mismatches: 0, Indels: 9
0.77 0.00 0.23
Matches are distributed among these distances:
15 6 0.20
16 14 0.47
17 4 0.13
18 6 0.20
ACGTcount: A:0.18, C:0.04, G:0.04, T:0.75
Consensus pattern (15 bp):
TTTATTTATTTTCTT
Done.