Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 157 of 362
Found at i:51439784 original size:39 final size:40
Alignment explanation
Indices: 51439669--51439804 Score: 168
Period size: 40 Copynumber: 3.4 Consensus size: 40
51439659 TAACTCATTC
* * *
51439669 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGAACTTAACCCGGA-ATTAATAACTCGCACA
* * *
51439709 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGAACTTAACCCGGAATTAATAACTCGCACA
*
51439749 AAGGCCTTCGGAACTTAA-CCGGAATTAATAACTCGCACA
1 AATGCCTTCGGAACTTAACCCGGAATTAATAACTCGCACA
* *
51439788 AATACCTTCGGATCTTA
1 AATGCCTTCGGAACTTA
51439805 GTCCGGATAT
Statistics
Matches: 84, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
39 36 0.43
40 48 0.57
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGAACTTAACCCGGAATTAATAACTCGCACA
Found at i:51439811 original size:79 final size:80
Alignment explanation
Indices: 51439672--51439851 Score: 201
Period size: 79 Copynumber: 2.3 Consensus size: 80
51439662 CTCATTCAAT
* * *
51439672 GCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGACTTAACCCGGA-ATT
1 GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGGACTTAACCCGGATA-T
*
51439736 AGT-A-TCTCGCACAAA
65 AGTCACT-TAGCACAAA
* **
51439751 GGCCTTCGGAACTTAA-CCGGA-ATTAATAACTCGCACAAATACCTTC-GGATCTTAGTCCGGAT
1 -GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATACCTTCGGGA-CTTAACCCGGAT
51439813 ATAGTCACTTAGCACAAA
63 ATAGTCACTTAGCACAAA
*
51439831 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
51439852 CAGCATTCAA
Statistics
Matches: 85, Mismatches: 9, Indels: 12
0.80 0.08 0.11
Matches are distributed among these distances:
78 7 0.08
79 48 0.56
80 29 0.34
81 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGGACTTAACCCGGATATA
GTCACTTAGCACAAA
Found at i:51445420 original size:103 final size:102
Alignment explanation
Indices: 51445225--51445445 Score: 356
Period size: 103 Copynumber: 2.2 Consensus size: 102
51445215 TGTATATAAA
** * *
51445225 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGTGGTGCTATGTGCGTGATCCACCATATCTTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGTGGTGCTAAGTGCGTGATCCACCATATCTTT
51445290 GAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 GAAATGTGAAAGGGGGTTGCTATGTGCTGATT-CCCCG
*
51445328 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCA-TGGTGGTGCTAAGTGCG-TGATCCACCATATCT
51445392 TTGAAATGTGAAA-GGGGTTGCTATGTGCTGATTCCCCG
64 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
51445430 AGGGGTTGCTAAGTGC
1 AGGGGTTGCTAAGTGC
51445446 GATATCCATT
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
102 21 0.19
103 47 0.42
104 42 0.38
105 1 0.01
ACGTcount: A:0.18, C:0.19, G:0.31, T:0.32
Consensus pattern (102 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGTGGTGCTAAGTGCGTGATCCACCATATCTTT
GAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
Found at i:51445497 original size:69 final size:71
Alignment explanation
Indices: 51445366--51445514 Score: 239
Period size: 70 Copynumber: 2.1 Consensus size: 71
51445356 TCATTGGTGG
* *
51445366 TGCTAAGTGCGATATCCACCATATCTTTGAAATGTGAAAGGGGTTGCTATGTGCTGATT-CCCCG
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGTTGCTATGTGCTGATTCCCCCG
51445430 AGGGGT
66 AGGGGT
***
51445436 TGCTAAGTGCGATATCCATTGTATATTTGAAATG-AAAAGGGGTTGCTATGTGCTGATTCCCCCG
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGTTGCTATGTGCTGATTCCCCCG
51445500 AGGGGT
66 AGGGGT
51445506 TGCTAAGTG
1 TGCTAAGTG
51445515 ATGATTCCCC
Statistics
Matches: 73, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
69 23 0.32
70 50 0.68
ACGTcount: A:0.23, C:0.17, G:0.29, T:0.31
Consensus pattern (71 bp):
TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGTTGCTATGTGCTGATTCCCCCG
AGGGGT
Found at i:51445519 original size:27 final size:27
Alignment explanation
Indices: 51445473--51445524 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
51445463 TGAAATGAAA
* *
51445473 AGGGGTTGCTATGTGCTGATTCCCCCG
1 AGGGGTTGCTAAGTGATGATTCCCCCG
51445500 AGGGGTTGCTAAGTGATGATTCCCC
1 AGGGGTTGCTAAGTGATGATTCCCC
51445525 GATTCAGTGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.15, C:0.23, G:0.33, T:0.29
Consensus pattern (27 bp):
AGGGGTTGCTAAGTGATGATTCCCCCG
Found at i:51452954 original size:104 final size:104
Alignment explanation
Indices: 51452774--51452997 Score: 378
Period size: 104 Copynumber: 2.2 Consensus size: 104
51452764 TGTATATAAA
** * *
51452774 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
51452839 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* *
51452878 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCG-TGATCCACCATATCT
51452942 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
51452982 AGGGGTTGCTAAGTGC
1 AGGGGTTGCTAAGTGC
51452998 GATATCCATT
Statistics
Matches: 113, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
104 112 0.99
105 1 0.01
ACGTcount: A:0.18, C:0.19, G:0.32, T:0.31
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:51453062 original size:26 final size:26
Alignment explanation
Indices: 51453027--51453078 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
51453017 AAATGAAAAG
* *
51453027 GGGGTTGCTATGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGATGATTCCCCGA
51453053 GGGGTTGCTAAGTGATGATTCCCCGA
1 GGGGTTGCTAAGTGATGATTCCCCGA
51453079 TTCAGTGGTG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.15, C:0.21, G:0.35, T:0.29
Consensus pattern (26 bp):
GGGGTTGCTAAGTGATGATTCCCCGA
Found at i:51453065 original size:70 final size:72
Alignment explanation
Indices: 51452916--51453066 Score: 243
Period size: 72 Copynumber: 2.1 Consensus size: 72
51452906 TCATTGGTGG
* *
51452916 TGCTAAGTGCGATATCCACCATATCTTTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
51452981 GAGGGGT
66 GAGGGGT
***
51452988 TGCTAAGTGCGATATCCATTGTATATTTGAAATG-AAAAGGGGGTTGCTATGTGCTGATT-CCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
51453051 GAGGGGT
66 GAGGGGT
51453058 TGCTAAGTG
1 TGCTAAGTG
51453067 ATGATTCCCC
Statistics
Matches: 74, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
70 20 0.27
71 24 0.32
72 30 0.41
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (72 bp):
TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
GAGGGGT
Found at i:51455189 original size:38 final size:38
Alignment explanation
Indices: 51455138--51455213 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
51455128 TTTTGCAAAA
51455138 TGATTAAGAGTTTAGGGTTTTACCATGAATGGATTTGT
1 TGATTAAGAGTTTAGGGTTTTACCATGAATGGATTTGT
51455176 TGATTAAGAGTTTAGGGTTTTACCATGAATGGATTTGT
1 TGATTAAGAGTTTAGGGTTTTACCATGAATGGATTTGT
51455214 AGTGTTTGCT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.26, C:0.05, G:0.26, T:0.42
Consensus pattern (38 bp):
TGATTAAGAGTTTAGGGTTTTACCATGAATGGATTTGT
Found at i:51467162 original size:20 final size:21
Alignment explanation
Indices: 51467124--51467162 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
51467114 CTTACATTAA
*
51467124 CCCATTTTCTCTATTTTTTGG
1 CCCATTTTCTCTATCTTTTGG
*
51467145 CCCA-TTTCTCTCTCTTTT
1 CCCATTTTCTCTATCTTTT
51467163 TACTCTCTTA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 12 0.75
21 4 0.25
ACGTcount: A:0.08, C:0.31, G:0.05, T:0.56
Consensus pattern (21 bp):
CCCATTTTCTCTATCTTTTGG
Found at i:51469195 original size:29 final size:28
Alignment explanation
Indices: 51469114--51469197 Score: 71
Period size: 29 Copynumber: 2.9 Consensus size: 28
51469104 TATTAAAGAG
* * *
51469114 AAAT-AAAATAAAAAGTAATTTAAAAAGAT
1 AAATAAAAAT-AAAAGT-ATTAAAAAATAA
* **
51469143 AAATAAAGATAAAAGTACAAAAAAATAA
1 AAATAAAAATAAAAGTATTAAAAAATAA
*
51469171 AAATAATAAATAAAAGTATTCAAAAAT
1 AAATAA-AAATAAAAGTATTAAAAAAT
51469198 CCTCATCGCC
Statistics
Matches: 43, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
28 13 0.30
29 26 0.60
30 4 0.09
ACGTcount: A:0.70, C:0.02, G:0.06, T:0.21
Consensus pattern (28 bp):
AAATAAAAATAAAAGTATTAAAAAATAA
Found at i:51470494 original size:29 final size:30
Alignment explanation
Indices: 51470462--51470518 Score: 71
Period size: 29 Copynumber: 1.9 Consensus size: 30
51470452 ACCATGAATG
* * *
51470462 TAATTAAATTAACAA-ATTCAACCAAAAAC
1 TAATGAAACTAACAAGACTCAACCAAAAAC
*
51470491 TAATGACACTAACAAGACTCAACCAAAA
1 TAATGAAACTAACAAGACTCAACCAAAA
51470519 CCAATTGAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
29 12 0.52
30 11 0.48
ACGTcount: A:0.56, C:0.21, G:0.04, T:0.19
Consensus pattern (30 bp):
TAATGAAACTAACAAGACTCAACCAAAAAC
Found at i:51475027 original size:46 final size:45
Alignment explanation
Indices: 51474971--51475096 Score: 139
Period size: 47 Copynumber: 2.7 Consensus size: 45
51474961 ATCTCGTAGC
* * *
51474971 CGATGTATGTCCCAGACATGTCTTACACTGGC-TCTCGTCTTAATGT-
1 CGATGCATGTCCCAGACATGTCTTACACTAGCAT-T--TCATAATGTG
* * *
51475017 CGATGCATGTCCTAGACATGTGTTACACTAGCATTTCATAGTGTGG
1 CGATGCATGTCCCAGACATGTCTTACACTAGCATTTCATAATGT-G
51475063 CCGATGCATGTCCCAGACATGTCTTACACTAGCA
1 -CGATGCATGTCCCAGACATGTCTTACACTAGCA
51475097 CACACATATC
Statistics
Matches: 68, Mismatches: 8, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
44 7 0.10
46 29 0.43
47 32 0.47
ACGTcount: A:0.23, C:0.25, G:0.21, T:0.31
Consensus pattern (45 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCATTTCATAATGTG
Found at i:51488030 original size:43 final size:41
Alignment explanation
Indices: 51487971--51488122 Score: 164
Period size: 43 Copynumber: 3.7 Consensus size: 41
51487961 CAAAAAATCA
* * *
51487971 GCTATATGTGGCACTTAGTGTACGAGATCGAGATAGCTTTC
1 GCTATATATGACACTTAGTGTGCGAGATCGAGATAGCTTTC
*
51488012 GCTATATATATGACACTTAGTGTGCGATATCGAGATAGC-TTC
1 GC--TATATATGACACTTAGTGTGCGAGATCGAGATAGCTTTC
* * * **
51488054 AGCTATATATGGCACTTAGTGTGCGA-TTTGAGATAGCTTAG
1 -GCTATATATGACACTTAGTGTGCGAGATCGAGATAGCTTTC
* *
51488095 GCTATGTACGACACTTAGTGTGCGAGAT
1 GCTATATATGACACTTAGTGTGCGAGAT
51488123 ATTGAATATT
Statistics
Matches: 93, Mismatches: 13, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
40 31 0.33
41 26 0.28
42 3 0.03
43 33 0.35
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.32
Consensus pattern (41 bp):
GCTATATATGACACTTAGTGTGCGAGATCGAGATAGCTTTC
Found at i:51488073 original size:41 final size:41
Alignment explanation
Indices: 51487968--51488119 Score: 175
Period size: 40 Copynumber: 3.7 Consensus size: 41
51487958 CGACAAAAAA
* * * *
51487968 TCAGCTATATGTGGCACTTAGTGTACGAGATCGAGATAGCTT
1 TCAGCTATATATGACACTTAGTGTGCGATATCGAGATAGC-T
51488010 TC-GCTATATATATGACACTTAGTGTGCGATATCGAGATAGCT
1 TCAGC--TATATATGACACTTAGTGTGCGATATCGAGATAGCT
* *
51488052 TCAGCTATATATGGCACTTAGTGTGCGAT-TTGAGATAGCT
1 TCAGCTATATATGACACTTAGTGTGCGATATCGAGATAGCT
* *
51488092 T-AGGCTATGTACGACACTTAGTGTGCGA
1 TCA-GCTATATATGACACTTAGTGTGCGA
51488120 GATATTGAAT
Statistics
Matches: 97, Mismatches: 9, Indels: 10
0.84 0.08 0.09
Matches are distributed among these distances:
39 1 0.01
40 33 0.34
41 25 0.26
42 5 0.05
43 33 0.34
ACGTcount: A:0.26, C:0.16, G:0.25, T:0.32
Consensus pattern (41 bp):
TCAGCTATATATGACACTTAGTGTGCGATATCGAGATAGCT
Found at i:51491586 original size:40 final size:40
Alignment explanation
Indices: 51491542--51491679 Score: 172
Period size: 40 Copynumber: 3.5 Consensus size: 40
51491532 TTTGATGTGT
* *
51491542 GTATCCGGGCTTAAAGACCTGCAGGCTTCGTGCTGGAGTG
1 GTATCCGGGTTTAAAGACCTGCAGGCTTCGTGCTGGAATG
* * * *
51491582 GTATCCGGGTTTAAAGACCCGCAGGCTAT-ATACTGGAATT
1 GTATCCGGGTTTAAAGACCTGCAGGCT-TCGTGCTGGAATG
*
51491622 GTATCTGGGTTTAAAGACCTGCAGGCTTCGTGCTGGAATG
1 GTATCCGGGTTTAAAGACCTGCAGGCTTCGTGCTGGAATG
* *
51491662 GAATCTGGG-TTAAAGACC
1 GTATCCGGGTTTAAAGACC
51491680 CGTAGGCTCG
Statistics
Matches: 84, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
39 10 0.12
40 73 0.87
41 1 0.01
ACGTcount: A:0.23, C:0.20, G:0.30, T:0.27
Consensus pattern (40 bp):
GTATCCGGGTTTAAAGACCTGCAGGCTTCGTGCTGGAATG
Found at i:51500423 original size:25 final size:25
Alignment explanation
Indices: 51500395--51500442 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
51500385 TTATATTACG
* * *
51500395 AAAATGACTGTTTTGCCCCTAGGTA
1 AAAATGACCGTTATACCCCTAGGTA
51500420 AAAATGACCGTTATACCCCTAGG
1 AAAATGACCGTTATACCCCTAGG
51500443 GTTTACTTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (25 bp):
AAAATGACCGTTATACCCCTAGGTA
Found at i:51500503 original size:20 final size:20
Alignment explanation
Indices: 51500478--51500544 Score: 109
Period size: 20 Copynumber: 3.4 Consensus size: 20
51500468 ATTTTGATAT
51500478 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGATATGC
51500498 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
51500518 ACATGATATGTATGATACGC
1 ACATGATATGTATGATATGC
51500538 ACATGAT
1 ACATGAT
51500545 GTATTCATAA
Statistics
Matches: 45, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
20 43 0.96
21 2 0.04
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:51500505 original size:11 final size:11
Alignment explanation
Indices: 51500489--51500544 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
51500479 CATGATTGAT
51500489 ATGATATGCAC
1 ATGATATGCAC
*
51500500 ATGATATG--T
1 ATGATATGCAC
51500509 ATGATATGCAC
1 ATGATATGCAC
*
51500520 ATGATATG--T
1 ATGATATGCAC
*
51500529 ATGATACGCAC
1 ATGATATGCAC
51500540 ATGAT
1 ATGAT
51500545 GTATTCATAA
Statistics
Matches: 36, Mismatches: 5, Indels: 8
0.73 0.10 0.16
Matches are distributed among these distances:
9 15 0.42
11 21 0.58
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:51500623 original size:26 final size:25
Alignment explanation
Indices: 51500594--51500660 Score: 89
Period size: 25 Copynumber: 2.6 Consensus size: 25
51500584 GAGGAAGTGC
**
51500594 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTT-TGCCCCAGTTTACCG
*
51500620 AAAAGGGTTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
*
51500645 AAATGGGCTTTGCCCC
1 AAAAGGGCTTTGCCCC
51500661 TGTTATTAAA
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
25 27 0.75
26 9 0.25
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.28
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCG
Found at i:51510090 original size:40 final size:40
Alignment explanation
Indices: 51510035--51510200 Score: 212
Period size: 40 Copynumber: 4.2 Consensus size: 40
51510025 GGACTAAGAT
* *
51510035 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTC
*
51510075 CCGAAGGCATTTGTGCGAGTTACTATATCCGGG-TGAAGTC
1 CCGAAGGCATTTGTGCGAGTGACTATATCCGGGCT-AAGTC
* * **
51510115 CCGAAGGCATTTGTGCGATTTACTATATCTAGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTC
* *
51510155 CCGAAGGCATTTGTGCGAGTTG-TTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCGAG-TGACTATATCCGGGCTAAGTC
51510194 CCGAAGG
1 CCGAAGG
51510201 TACTTGGGTT
Statistics
Matches: 113, Mismatches: 10, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
39 16 0.14
40 95 0.84
41 2 0.02
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.29
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTC
Found at i:51514005 original size:30 final size:30
Alignment explanation
Indices: 51513960--51514018 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
51513950 ATTTAATACG
* *
51513960 AACTTTGGCAAAATTACATTTTTTCCCCTC
1 AACTTTGGCAAAATTACACTTTTGCCCCTC
* *
51513990 AACTTTTGCATAATTACACTTTTGCCCCT
1 AACTTTGGCAAAATTACACTTTTGCCCCT
51514019 ATGCTTGGGA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.25, C:0.27, G:0.07, T:0.41
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTC
Found at i:51520689 original size:13 final size:13
Alignment explanation
Indices: 51520673--51520707 Score: 70
Period size: 13 Copynumber: 2.7 Consensus size: 13
51520663 TACCAACGGT
51520673 AAGTACCTTTCCC
1 AAGTACCTTTCCC
51520686 AAGTACCTTTCCC
1 AAGTACCTTTCCC
51520699 AAGTACCTT
1 AAGTACCTT
51520708 GAAATTCCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.26, C:0.34, G:0.09, T:0.31
Consensus pattern (13 bp):
AAGTACCTTTCCC
Found at i:51523482 original size:46 final size:46
Alignment explanation
Indices: 51523432--51523603 Score: 183
Period size: 46 Copynumber: 3.7 Consensus size: 46
51523422 TGGTTGAGCA
*
51523432 TCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
51523478 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
51523523 CATCC-AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
51523570 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
51523604 GGGGCGGGTT
Statistics
Matches: 103, Mismatches: 13, Indels: 20
0.76 0.10 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 5 0.05
46 81 0.79
47 6 0.06
49 3 0.03
50 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:51523597 original size:92 final size:93
Alignment explanation
Indices: 51523429--51523598 Score: 288
Period size: 92 Copynumber: 1.8 Consensus size: 93
51523419 GGATGGTTGA
* *
51523429 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
51523494 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* *
51523522 GCATCC-AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
51523586 TGAGTCTGAGTTC
66 TGAGTCCGAGTTC
51523599 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
92 66 0.92
93 6 0.08
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:51527210 original size:21 final size:21
Alignment explanation
Indices: 51527186--51527227 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
51527176 TCATCAGATC
*
51527186 TACACCTTGAGGCATCGGGGG
1 TACACCTTGAGGAATCGGGGG
**
51527207 TACAGGTTGAGGAATCGGGGG
1 TACACCTTGAGGAATCGGGGG
51527228 AGGTGGGGGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.21, C:0.17, G:0.43, T:0.19
Consensus pattern (21 bp):
TACACCTTGAGGAATCGGGGG
Found at i:51529020 original size:47 final size:45
Alignment explanation
Indices: 51528898--51529020 Score: 144
Period size: 45 Copynumber: 2.7 Consensus size: 45
51528888 ATGTAACCCC
* *
51528898 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCTTTGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCTTTACAT
*
51528943 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGG--G-CT--TTACAT
*
51528993 -C-TCA-CGAACTCGGACTCAACTCAACGAG
1 CCATAAGCGAACTCGGACTCAACTCAACGAG
51529021 TTGGAACTCA
Statistics
Matches: 70, Mismatches: 3, Indels: 8
0.86 0.04 0.10
Matches are distributed among these distances:
45 36 0.51
47 24 0.34
48 4 0.06
49 1 0.01
50 5 0.07
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.20
Consensus pattern (45 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCTTTACAT
Found at i:51529474 original size:30 final size:29
Alignment explanation
Indices: 51529440--51529498 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 29
51529430 AGTTAATACG
*
51529440 AACTTTGGCAAAATTACATTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTT-CCCCTA
* *
51529470 AACTTTTGCATAATTACACTTTTCCCCTA
1 AACTTTGGCAAAATTACACTTTTCCCCTA
51529499 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 6 0.23
30 20 0.77
ACGTcount: A:0.29, C:0.25, G:0.07, T:0.39
Consensus pattern (29 bp):
AACTTTGGCAAAATTACACTTTTCCCCTA
Found at i:51531883 original size:84 final size:81
Alignment explanation
Indices: 51531791--51531969 Score: 214
Period size: 81 Copynumber: 2.2 Consensus size: 81
51531781 CAGCTATATG
* *
51531791 TGGCACTTAGTGTGAGAGATCGAAATAGCTTCGGCTATATATATGGCACTTAGTGTGCAATATCG
1 TGGCACTTAGTGTGAGAGATCGAAATAGCTTCAGC--TATATATGGAACTTAGTGTGCAAT-TCG
* * *
51531856 AGATAGGTTCGGCTATTTA
63 AGATAGCTTAGGCTATGTA
* * * * * * *
51531875 TGGCACTTAGTTTGCGATATCGAGATAGCTTTAGCTATATATGGAACTTAGTGTGCGATTTGAGA
1 TGGCACTTAGTGTGAGAGATCGAAATAGCTTCAGCTATATATGGAACTTAGTGTGCAATTCGAGA
51531940 TAGCTTAGGCTATGTA
66 TAGCTTAGGCTATGTA
*
51531956 CGGCACTTAGTGTG
1 TGGCACTTAGTGTG
51531970 CAATATATTA
Statistics
Matches: 81, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 30 0.37
82 22 0.27
84 29 0.36
ACGTcount: A:0.26, C:0.14, G:0.27, T:0.34
Consensus pattern (81 bp):
TGGCACTTAGTGTGAGAGATCGAAATAGCTTCAGCTATATATGGAACTTAGTGTGCAATTCGAGA
TAGCTTAGGCTATGTA
Found at i:51531895 original size:41 final size:41
Alignment explanation
Indices: 51531791--51531975 Score: 210
Period size: 41 Copynumber: 4.5 Consensus size: 41
51531781 CAGCTATATG
* * *
51531791 TGGCACTTAGTGTGAGAGATCGAAATAGCTTCGGCTATATATA
1 TGGCACTTAGTGTGCGATATCGAGATAGCTTCGGCTAT-T-TA
* *
51531834 TGGCACTTAGTGTGCAATATCGAGATAGGTTCGGCTATTTA
1 TGGCACTTAGTGTGCGATATCGAGATAGCTTCGGCTATTTA
* ** *
51531875 TGGCACTTAGTTTGCGATATCGAGATAGCTTTAGCTATATA
1 TGGCACTTAGTGTGCGATATCGAGATAGCTTCGGCTATTTA
* * * *
51531916 TGGAACTTAGTGTGCGAT-TTGAGATAGCTTAGGCTATGTA
1 TGGCACTTAGTGTGCGATATCGAGATAGCTTCGGCTATTTA
* *
51531956 CGGCACTTAGTGTGCAATAT
1 TGGCACTTAGTGTGCGATAT
51531976 ATTAAATATT
Statistics
Matches: 121, Mismatches: 20, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
40 33 0.27
41 54 0.45
42 1 0.01
43 33 0.27
ACGTcount: A:0.26, C:0.14, G:0.26, T:0.34
Consensus pattern (41 bp):
TGGCACTTAGTGTGCGATATCGAGATAGCTTCGGCTATTTA
Found at i:51538680 original size:39 final size:39
Alignment explanation
Indices: 51538623--51538750 Score: 202
Period size: 39 Copynumber: 3.3 Consensus size: 39
51538613 TGATATTTGG
*
51538623 AACATATCCGGACTTGAGGTCCGCAGGCTACGTGCTGGA
1 AACATATCCGGACCTGAGGTCCGCAGGCTACGTGCTGGA
*
51538662 GACATATCCGGACCTGAGGTCCGCAGGCTACGTGCTGGA
1 AACATATCCGGACCTGAGGTCCGCAGGCTACGTGCTGGA
* * *
51538701 AACATATCCGGACCTAAGGTCCACAGGCTACGTGCTAGA
1 AACATATCCGGACCTGAGGTCCGCAGGCTACGTGCTGGA
*
51538740 AATATATCCGG
1 AACATATCCGG
51538751 GCCTAAAGTC
Statistics
Matches: 82, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 82 1.00
ACGTcount: A:0.26, C:0.27, G:0.28, T:0.20
Consensus pattern (39 bp):
AACATATCCGGACCTGAGGTCCGCAGGCTACGTGCTGGA
Found at i:51538756 original size:39 final size:39
Alignment explanation
Indices: 51538623--51538778 Score: 186
Period size: 39 Copynumber: 4.0 Consensus size: 39
51538613 TGATATTTGG
* * * *
51538623 AACATATCCGGACTTGAGGTCCGCAGGCTACGTGCTGGA
1 AACATATCCGGACCTAAGGTCCACAGGCTACGTGCTAGA
* * * *
51538662 GACATATCCGGACCTGAGGTCCGCAGGCTACGTGCTGGA
1 AACATATCCGGACCTAAGGTCCACAGGCTACGTGCTAGA
51538701 AACATATCCGGACCTAAGGTCCACAGGCTACGTGCTAGA
1 AACATATCCGGACCTAAGGTCCACAGGCTACGTGCTAGA
* * * **
51538740 AATATATCCGGGCCTAAAGTCCCACAGGCTTTGTGCTAG
1 AACATATCCGGACCTAAGGT-CCACAGGCTACGTGCTAG
51538779 TAACTGGACT
Statistics
Matches: 105, Mismatches: 11, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 89 0.85
40 16 0.15
ACGTcount: A:0.25, C:0.27, G:0.28, T:0.21
Consensus pattern (39 bp):
AACATATCCGGACCTAAGGTCCACAGGCTACGTGCTAGA
Found at i:51540194 original size:43 final size:43
Alignment explanation
Indices: 51540033--51540195 Score: 138
Period size: 43 Copynumber: 3.8 Consensus size: 43
51540023 AAATGCCCTA
* * *
51540033 ATTATCGTG-AAGACTACGTCTGTGACGTTGGCATCGACT-TATG
1 ATTA-CGTGTAAGACCACGTCTGGGACGTTGGCATCGA-TATTTG
* * * * *
51540076 ATTTACGTGTAAGACTATGTCTGGGACATCGGTATCG-TATTTG
1 A-TTACGTGTAAGACCACGTCTGGGACGTTGGCATCGATATTTG
*
51540119 ATTTCGTGTAAGACC-CTGTCTGGGACAG-TGGCATCGATATTTG
1 ATTACGTGTAAGACCAC-GTCTGGGAC-GTTGGCATCGATATTTG
* * *
51540162 ATTACATATAAGACCACGTCTGGGATGTTGGCAT
1 ATTACGTGTAAGACCACGTCTGGGACGTTGGCAT
51540196 TGTATGAGCT
Statistics
Matches: 96, Mismatches: 16, Indels: 16
0.75 0.12 0.12
Matches are distributed among these distances:
42 29 0.30
43 41 0.43
44 26 0.27
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.33
Consensus pattern (43 bp):
ATTACGTGTAAGACCACGTCTGGGACGTTGGCATCGATATTTG
Found at i:51546735 original size:15 final size:16
Alignment explanation
Indices: 51546715--51546751 Score: 60
Period size: 15 Copynumber: 2.4 Consensus size: 16
51546705 TTACCTCCGC
51546715 CTTCTTCTCCTTC-TT
1 CTTCTTCTCCTTCGTT
51546730 CTTCTTCTCCTTCGTT
1 CTTCTTCTCCTTCGTT
51546746 -TTCTTC
1 CTTCTTC
51546752 ACATTATTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 19 0.90
16 2 0.10
ACGTcount: A:0.00, C:0.38, G:0.03, T:0.59
Consensus pattern (16 bp):
CTTCTTCTCCTTCGTT
Found at i:51548853 original size:20 final size:20
Alignment explanation
Indices: 51548812--51548853 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
51548802 TTACACACCA
*
51548812 AAGAATCTGTCTACATCCCT
1 AAGAATCTGTCTACATCACT
*
51548832 AAGAATCTG-CTATATACACT
1 AAGAATCTGTCTACAT-CACT
51548852 AA
1 AA
51548854 TTTCATGCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
19 5 0.26
20 14 0.74
ACGTcount: A:0.38, C:0.24, G:0.10, T:0.29
Consensus pattern (20 bp):
AAGAATCTGTCTACATCACT
Found at i:51557287 original size:27 final size:27
Alignment explanation
Indices: 51557255--51557310 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
51557245 TGGTACGGAA
51557255 GTATTGTTCCATCTCTTATAAGAAGTT
1 GTATTGTTCCATCTCTTATAAGAAGTT
51557282 GTATTGTTCCATCTCTTATAAGAAGTT
1 GTATTGTTCCATCTCTTATAAGAAGTT
51557309 GT
1 GT
51557311 CCACTTCCCT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.25, C:0.14, G:0.16, T:0.45
Consensus pattern (27 bp):
GTATTGTTCCATCTCTTATAAGAAGTT
Found at i:51557318 original size:27 final size:27
Alignment explanation
Indices: 51557261--51557318 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 27
51557251 GGAAGTATTG
***
51557261 TTCCATCTCTTATAAGAAGTTGTATTG
1 TTCCATCTCTTATAAGAAGTTGTACAC
*
51557288 TTCCATCTCTTATAAGAAGTTGTCCAC
1 TTCCATCTCTTATAAGAAGTTGTACAC
51557315 TTCC
1 TTCC
51557319 CTTGTGAACC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.24, C:0.22, G:0.12, T:0.41
Consensus pattern (27 bp):
TTCCATCTCTTATAAGAAGTTGTACAC
Found at i:51560557 original size:17 final size:18
Alignment explanation
Indices: 51560520--51560563 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
51560510 AACCGAAATT
51560520 TATTTTATAATAATATAA
1 TATTTTATAATAATATAA
*
51560538 TATTTTATAATAA-CTAA
1 TATTTTATAATAATATAA
*
51560555 TATATTATA
1 TATTTTATA
51560564 TATATTTAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
17 11 0.46
18 13 0.54
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (18 bp):
TATTTTATAATAATATAA
Found at i:51561106 original size:15 final size:16
Alignment explanation
Indices: 51561075--51561108 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
51561065 TTTTATTATT
*
51561075 TTAAATATTTTAAAAA
1 TTAAATATTTAAAAAA
51561091 TTAAAT-TTTAAAAAA
1 TTAAATATTTAAAAAA
51561106 TTA
1 TTA
51561109 TTATTAATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 11 0.65
16 6 0.35
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (16 bp):
TTAAATATTTAAAAAA
Found at i:51566801 original size:40 final size:40
Alignment explanation
Indices: 51566708--51566964 Score: 342
Period size: 40 Copynumber: 6.5 Consensus size: 40
51566698 AAGCCAAGTA
* * *
51566708 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
51566746 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
51566786 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
51566826 CCTTCGGGACTTAGCCCGGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
51566866 CCTTCGGGACTTAGCTCGGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
51566906 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
51566946 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
51566965 TTATCATCCG
Statistics
Matches: 198, Mismatches: 17, Indels: 6
0.90 0.08 0.03
Matches are distributed among these distances:
38 12 0.06
39 17 0.09
40 169 0.85
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:51579493 original size:67 final size:71
Alignment explanation
Indices: 51579399--51579573 Score: 214
Period size: 78 Copynumber: 2.4 Consensus size: 71
51579389 ACTGTAGTGG
* * *
51579399 ATCAAGATTACCTTTTCAGGTCAAATCCTA-C-CC-A-CATAAGGAATCATATATCGTGTAATCG
1 ATCAAGATTACCTTTTCAGGTCAAATCCTACCACCTACCATAAGGAATCATATATCATGTAACCA
*
51579460 TAGCGA
66 TAGCAA
*
51579466 ATCAAGATTACCTTTTCAGGTCAAATCCTATCCACCTTAGGTTACCATAATGAATCATATATCAT
1 ATCAAGATTACCTTTTCAGGTCAAATCCTA-CCACC------TACCATAAGGAATCATATATCAT
51579531 GTAACCATAGCAA
59 GTAACCATAGCAA
51579544 ATCAAGATTACCTTTTCAGGTCAAATCCTA
1 ATCAAGATTACCTTTTCAGGTCAAATCCTA
51579574 TTCGCTTTAA
Statistics
Matches: 92, Mismatches: 5, Indels: 11
0.85 0.05 0.10
Matches are distributed among these distances:
67 30 0.33
69 1 0.01
70 2 0.02
77 1 0.01
78 58 0.63
ACGTcount: A:0.35, C:0.23, G:0.12, T:0.30
Consensus pattern (71 bp):
ATCAAGATTACCTTTTCAGGTCAAATCCTACCACCTACCATAAGGAATCATATATCATGTAACCA
TAGCAA
Found at i:51581580 original size:51 final size:50
Alignment explanation
Indices: 51581394--51581584 Score: 262
Period size: 50 Copynumber: 3.8 Consensus size: 50
51581384 GTAGCCAAAC
* *
51581394 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGA-CCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGATCCAAT
* * *
51581443 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTG-TCCTAAC
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGATCC-AAT
* *
51581493 TATCTGATACACATAGTAGCCTGCACTTAGTACTACACATGTGATCGAAGT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGATCCAA-T
*
51581544 TAT-TGGGTACGCATAGTAGCCTGCACTTAGTACTACACATG
1 TATCT-GGTACACATAGTAGCCTGCACTTAGTACTACACATG
51581585 CGACCTAGCT
Statistics
Matches: 125, Mismatches: 12, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
49 41 0.33
50 45 0.36
51 39 0.31
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (50 bp):
TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGATCCAAT
Found at i:51582432 original size:30 final size:30
Alignment explanation
Indices: 51582396--51582456 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
51582386 TCCTTAACTC
51582396 AAACTTTTGAAAATTTACAATTTTGCCCCT
1 AAACTTTTGAAAATTTACAATTTTGCCCCT
* * * *
51582426 AAACTTTTGCATATTTACACTTTTTCCCCT
1 AAACTTTTGAAAATTTACAATTTTGCCCCT
51582456 A
1 A
51582457 GGCTCAGGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.23, G:0.05, T:0.43
Consensus pattern (30 bp):
AAACTTTTGAAAATTTACAATTTTGCCCCT
Found at i:51585960 original size:30 final size:30
Alignment explanation
Indices: 51585915--51585974 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
51585905 ATTTAATACG
*
51585915 AACTTTGGCAAAATTACATTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
* *
51585945 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
51585975 GGCTCAGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.28, C:0.25, G:0.08, T:0.38
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:51590317 original size:11 final size:10
Alignment explanation
Indices: 51590301--51590334 Score: 50
Period size: 11 Copynumber: 3.2 Consensus size: 10
51590291 TTATATATTA
51590301 AATAAATTAAT
1 AATAAA-TAAT
51590312 AATAAAATAAT
1 AAT-AAATAAT
51590323 AATAAATAAT
1 AATAAATAAT
51590333 AA
1 AA
51590335 AATATCTCAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 9 0.41
11 10 0.45
12 3 0.14
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (10 bp):
AATAAATAAT
Found at i:51591848 original size:27 final size:27
Alignment explanation
Indices: 51591818--51591995 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
51591808 ATATTGAGTC
* * * *
51591818 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
51591845 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
51591872 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
51591900 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
51591927 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
51591954 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
51591981 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
51591996 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:51591957 original size:82 final size:81
Alignment explanation
Indices: 51591839--51591994 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
51591829 TGCTATATAA
* *
51591839 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
51591904 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
51591921 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
51591985 CACTTAGTGC
65 CACTTAGTGC
51591995 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:51593895 original size:46 final size:46
Alignment explanation
Indices: 51593788--51593901 Score: 142
Period size: 44 Copynumber: 2.5 Consensus size: 46
51593778 TGTCACAGAA
** *
51593788 ATAGCTTCAACTATATATATATTGGCATTTAGTATGCGAGACCGAG
1 ATAGCTTCGGCTATATATATATTGGCACTTAGTATGCGAGACCGAG
* * * **
51593834 ATATCTTCGGC--TATATATATTGGCACTTAGTGTGCGTGATTGAG
1 ATAGCTTCGGCTATATATATATTGGCACTTAGTATGCGAGACCGAG
51593878 ATAGCTTCGGCTATATATATATTG
1 ATAGCTTCGGCTATATATATATTG
51593902 TAACACTCCT
Statistics
Matches: 57, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
44 38 0.67
46 19 0.33
ACGTcount: A:0.28, C:0.14, G:0.21, T:0.37
Consensus pattern (46 bp):
ATAGCTTCGGCTATATATATATTGGCACTTAGTATGCGAGACCGAG
Found at i:51600592 original size:40 final size:40
Alignment explanation
Indices: 51600315--51600578 Score: 358
Period size: 40 Copynumber: 6.7 Consensus size: 40
51600305 TTGAATGATG
* * * *
51600315 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
51600355 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
51600395 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
51600434 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
51600473 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
51600513 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
51600554 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
51600579 AACGAGGAGC
Statistics
Matches: 206, Mismatches: 13, Indels: 10
0.90 0.06 0.04
Matches are distributed among these distances:
39 74 0.36
40 122 0.59
41 10 0.05
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:51600596 original size:80 final size:77
Alignment explanation
Indices: 51600316--51600611 Score: 305
Period size: 80 Copynumber: 3.7 Consensus size: 77
51600306 TGAATGATGT
* * **
51600316 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAG-GACTA-ATCCGGGTTAAG-TCCCGAAGGCATT
* *
51600379 TGTGCGAGATACTAATT
62 TGTGCGAGTTACTAA-A
* *
51600396 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAG-CCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-GACTAA-TCCGGGTTAAGTCCCGAAGGCATTTG
51600459 TGCGAGTTACTAAA
64 TGCGAGTTACTAAA
* *
51600473 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-GACT-AATCCGGGTTAAGTCCCGAAGGCATTT
51600538 GTGCGAGTTACTATAA
63 GTGCGAGTTACTA-AA
* ** * *
51600554 CCGGGCTATGTCCCGAAGGCATTTGAACGAGGAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGGA-CTA-ATCCGGGTTAAGTCCCGAAGG
51600612 TACGTGATTT
Statistics
Matches: 189, Mismatches: 17, Indels: 21
0.83 0.07 0.09
Matches are distributed among these distances:
78 35 0.19
79 74 0.39
80 78 0.41
81 2 0.01
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (77 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGGACTAATCCGGGTTAAGTCCCGAAGGCATTTGTG
CGAGTTACTAAA
Found at i:51623173 original size:16 final size:16
Alignment explanation
Indices: 51623149--51623193 Score: 72
Period size: 16 Copynumber: 2.8 Consensus size: 16
51623139 GTAGATCGAC
*
51623149 AAATCCCGAAAAGTCG
1 AAATGCCGAAAAGTCG
*
51623165 AAATGCCGAAAAGTTG
1 AAATGCCGAAAAGTCG
51623181 AAATGCCGAAAAG
1 AAATGCCGAAAAG
51623194 CTGAAAGTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.47, C:0.18, G:0.22, T:0.13
Consensus pattern (16 bp):
AAATGCCGAAAAGTCG
Found at i:51623198 original size:16 final size:15
Alignment explanation
Indices: 51623149--51623199 Score: 66
Period size: 16 Copynumber: 3.2 Consensus size: 15
51623139 GTAGATCGAC
*
51623149 AAATCCCGAAAAGTCG
1 AAATGCCGAAAAGT-G
51623165 AAATGCCGAAAAGTTG
1 AAATGCCGAAAAG-TG
51623181 AAATGCCGAAAAGCTG
1 AAATGCCGAAAAG-TG
51623197 AAA
1 AAA
51623200 GTTTGGCTAC
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
16 31 0.97
17 1 0.03
ACGTcount: A:0.47, C:0.18, G:0.22, T:0.14
Consensus pattern (15 bp):
AAATGCCGAAAAGTG
Found at i:51632178 original size:26 final size:26
Alignment explanation
Indices: 51632149--51632208 Score: 66
Period size: 28 Copynumber: 2.2 Consensus size: 26
51632139 TCCCTTTGAA
* * *
51632149 TCATTCGATATTTTGCACACTAAGTG
1 TCATTCAATATCTCGCACACTAAGTG
51632175 TCATTCTCAATATCTCGCACACTAAGTG
1 TCA-T-TCAATATCTCGCACACTAAGTG
*
51632203 CCATTC
1 TCATTC
51632209 TCAATATTTC
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
26 5 0.18
27 2 0.07
28 21 0.75
ACGTcount: A:0.27, C:0.27, G:0.12, T:0.35
Consensus pattern (26 bp):
TCATTCAATATCTCGCACACTAAGTG
Found at i:51632194 original size:28 final size:28
Alignment explanation
Indices: 51632163--51632234 Score: 99
Period size: 28 Copynumber: 2.6 Consensus size: 28
51632153 TCGATATTTT
*
51632163 GCACACTAAGTGTCATTCTCAATATCTC
1 GCACACTAAGTGCCATTCTCAATATCTC
*
51632191 GCACACTAAGTGCCATTCTCAATATTTC
1 GCACACTAAGTGCCATTCTCAATATCTC
* * *
51632219 GTACACTGAGTACCAT
1 GCACACTAAGTGCCAT
51632235 ATTTGATTGC
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.29, C:0.28, G:0.12, T:0.31
Consensus pattern (28 bp):
GCACACTAAGTGCCATTCTCAATATCTC
Found at i:51638298 original size:40 final size:41
Alignment explanation
Indices: 51638239--51638390 Score: 211
Period size: 40 Copynumber: 3.8 Consensus size: 41
51638229 CATTTGAATG
* * *
51638239 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
*
51638279 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
*
51638319 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
* * *
51638359 ATACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC
51638391 TTGTGGTTAT
Statistics
Matches: 102, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
40 99 0.97
41 3 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (41 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
Found at i:51638402 original size:80 final size:80
Alignment explanation
Indices: 51638239--51638410 Score: 213
Period size: 80 Copynumber: 2.2 Consensus size: 80
51638229 CATTTGAATG
* * * * *
51638239 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTGACTATACCCGGGCTAAGACCCGAAGGCA
* *
51638304 TTTGTGCGAGTTGAT
66 ATTGTGCGAGTGGAT
* *
51638319 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATACCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAG-TGACTATACCCGGGCTAAGACCCGAAGGC
** *
51638383 AATTGTGCTTGTGGTT
65 AATTGTGCGAGTGGAT
51638399 ATATCC-GGCTAA
1 ATATCCGGGCTAA
51638411 ATTCCGAAGA
Statistics
Matches: 79, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
79 6 0.08
80 71 0.90
81 2 0.03
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTGACTATACCCGGGCTAAGACCCGAAGGCA
ATTGTGCGAGTGGAT
Found at i:51646448 original size:40 final size:41
Alignment explanation
Indices: 51646389--51646540 Score: 211
Period size: 40 Copynumber: 3.8 Consensus size: 41
51646379 CATTTGAATG
* * *
51646389 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
*
51646429 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
*
51646469 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
* * *
51646509 ATACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC
51646541 TTGTGGTTAT
Statistics
Matches: 102, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
40 99 0.97
41 3 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (41 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
Found at i:51646552 original size:80 final size:80
Alignment explanation
Indices: 51646389--51646560 Score: 213
Period size: 80 Copynumber: 2.2 Consensus size: 80
51646379 CATTTGAATG
* * * * *
51646389 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTGACTATACCCGGGCTAAGACCCGAAGGCA
* *
51646454 TTTGTGCGAGTTGAT
66 ATTGTGCGAGTGGAT
* *
51646469 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATACCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAG-TGACTATACCCGGGCTAAGACCCGAAGGC
** *
51646533 AATTGTGCTTGTGGTT
65 AATTGTGCGAGTGGAT
51646549 ATATCC-GGCTAA
1 ATATCCGGGCTAA
51646561 ATTCCGAAGA
Statistics
Matches: 79, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
79 6 0.08
80 71 0.90
81 2 0.03
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTGACTATACCCGGGCTAAGACCCGAAGGCA
ATTGTGCGAGTGGAT
Found at i:51648716 original size:57 final size:57
Alignment explanation
Indices: 51648625--51649096 Score: 800
Period size: 57 Copynumber: 8.2 Consensus size: 57
51648615 GATCTCATTT
* * *
51648625 CACACACTTAGTGCCCCAACAACCGATCTTGCACACACAGTGCTTGGTTACGGAACTCG
1 CACACAC--AGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACGGAACTCG
*
51648684 CACACACAGTGCCTCAACAATCGATCTCGCACACACAGTGCTCGGTTACGGAACTCG
1 CACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACGGAACTCG
* *
51648741 CACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGCTACGGAACTTG
1 CACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACGGAACTCG
*
51648798 CACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACAGAACTCG
1 CACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACGGAACTCG
* * *
51648855 CACACACAGTGCCTCAACAATCGATCTCGTACACACAGTGCTCGATTACGGAACTCG
1 CACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACGGAACTCG
*
51648912 CACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGCTACGGAACTCG
1 CACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACGGAACTCG
51648969 CACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACGGAACTCG
1 CACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACGGAACTCG
* * *
51649026 CACACACAGTGCCTCAACAATCGATCTCCCACACACAGTGCTCGGTTACGGAACTCA
1 CACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACGGAACTCG
51649083 CACACACAGTGCCT
1 CACACACAGTGCCT
51649097 ATGTTCACTT
Statistics
Matches: 391, Mismatches: 22, Indels: 2
0.94 0.05 0.00
Matches are distributed among these distances:
57 384 0.98
59 7 0.02
ACGTcount: A:0.29, C:0.36, G:0.18, T:0.17
Consensus pattern (57 bp):
CACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACGGAACTCG
Found at i:51650927 original size:26 final size:26
Alignment explanation
Indices: 51650898--51650957 Score: 66
Period size: 28 Copynumber: 2.2 Consensus size: 26
51650888 TCCCATTGAA
* * *
51650898 TCATTCGATATTTTGCACACTAAGTG
1 TCATTCAATATCTCGCACACTAAGTG
51650924 TCATTCTCAATATCTCGCACACTAAGTG
1 TCA-T-TCAATATCTCGCACACTAAGTG
*
51650952 CCATTC
1 TCATTC
51650958 TCAATATTTC
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
26 5 0.18
27 2 0.07
28 21 0.75
ACGTcount: A:0.27, C:0.27, G:0.12, T:0.35
Consensus pattern (26 bp):
TCATTCAATATCTCGCACACTAAGTG
Found at i:51650943 original size:28 final size:28
Alignment explanation
Indices: 51650912--51650983 Score: 99
Period size: 28 Copynumber: 2.6 Consensus size: 28
51650902 TCGATATTTT
*
51650912 GCACACTAAGTGTCATTCTCAATATCTC
1 GCACACTAAGTGCCATTCTCAATATCTC
*
51650940 GCACACTAAGTGCCATTCTCAATATTTC
1 GCACACTAAGTGCCATTCTCAATATCTC
* * *
51650968 GTACACTGAGTACCAT
1 GCACACTAAGTGCCAT
51650984 ATTTGATTGC
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.29, C:0.28, G:0.12, T:0.31
Consensus pattern (28 bp):
GCACACTAAGTGCCATTCTCAATATCTC
Found at i:51654056 original size:21 final size:21
Alignment explanation
Indices: 51654030--51654071 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
51654020 TGTATATCTG
51654030 TTAATTTTATCTATTTTTGTT
1 TTAATTTTATCTATTTTTGTT
51654051 TTAATTTTATCTATTTTTGTT
1 TTAATTTTATCTATTTTTGTT
51654072 CAAACTAGAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.19, C:0.05, G:0.05, T:0.71
Consensus pattern (21 bp):
TTAATTTTATCTATTTTTGTT
Found at i:51663094 original size:100 final size:101
Alignment explanation
Indices: 51662910--51663094 Score: 275
Period size: 100 Copynumber: 1.8 Consensus size: 101
51662900 GTGAATACAC
* * * * *
51662910 GTGTGTAGTACTAAGTGTAGGCTACTACGTGTATCATACTGTTAAGTCGCATGTGTAGTACTAAG
1 GTGTATAGTACTAAGTGCAGGCTACTACGTGTATCATAATGTGAAGTCACATGTGTAGTACTAAG
*
51662975 TGCAGGCTACTATGCGTACTCAATGACTTCGATCAT
66 TGCAGGCTACTACGCGTACTCAATGACTTCGATCAT
*
51663011 GTGTATAGTACTAAGTGCAGGCTACTA-GTGTATCA-AATGATGAGGTCACATGTGTAGTACTAA
1 GTGTATAGTACTAAGTGCAGGCTACTACGTGTATCATAATG-TGAAGTCACATGTGTAGTACTAA
*
51663074 GTGCAGGCTACTACGTGTACT
65 GTGCAGGCTACTACGCGTACT
51663095 GGATTGTTTA
Statistics
Matches: 75, Mismatches: 8, Indels: 3
0.87 0.09 0.03
Matches are distributed among these distances:
99 3 0.04
100 47 0.63
101 25 0.33
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (101 bp):
GTGTATAGTACTAAGTGCAGGCTACTACGTGTATCATAATGTGAAGTCACATGTGTAGTACTAAG
TGCAGGCTACTACGCGTACTCAATGACTTCGATCAT
Found at i:51663112 original size:49 final size:48
Alignment explanation
Indices: 51662911--51663135 Score: 208
Period size: 49 Copynumber: 4.5 Consensus size: 48
51662901 TGAATACACG
* *
51662911 TGTGTAGTACTAAGTGTAGGCTACTACGTGTATCATACTG-TTAAGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTA-C-TAATGATT-AGTCGCA
* * *
51662961 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCAATGACT--TCGATCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACT-AATGATTAGTCG--CA
* * *
51663010 TGTGTATAGTACTAAGTGCAGGCTACTA-GTGTATCAAATGATGAGGTCACA
1 TGTG--TAGTACTAAGTGCAGGCTACTACGTGTA-CTAATGATTA-GTCGCA
* *
51663061 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGGATTGTTTA-TCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACT--AATGATTAGTCGCA
*
51663110 TGTGTAGTACTAAGTGCAGACTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
51663136 TGCGTATCAG
Statistics
Matches: 146, Mismatches: 16, Indels: 27
0.77 0.08 0.14
Matches are distributed among these distances:
47 3 0.02
48 1 0.01
49 62 0.42
50 44 0.30
51 34 0.23
53 2 0.01
ACGTcount: A:0.27, C:0.16, G:0.24, T:0.32
Consensus pattern (48 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAATGATTAGTCGCA
Found at i:51663112 original size:100 final size:99
Alignment explanation
Indices: 51662910--51663144 Score: 262
Period size: 100 Copynumber: 2.4 Consensus size: 99
51662900 GTGAATACAC
* * * *
51662910 GTGTGTAGTACTAAGTGTAGGCTACTACGTGTATCATACTGTTAAGTCGCATGTGTAGTACTAAG
1 GTGT-TAGTACTAAGTGCAGGCTACTACGTGTATCATAATGTGAAGTCACATGTGTAGTACTAAG
*
51662975 TGCAGGCTACTATGCGTACTCAATGACTTCGATCAT
65 TGCAGGCTACTACGCGTACTCAATGACTTCGA-CAT
*
51663011 GTGTATAGTACTAAGTGCAGGCTACTA-GTGTATCA-AATGATGAGGTCACATGTGTAGTACTAA
1 GTGT-TAGTACTAAGTGCAGGCTACTACGTGTATCATAATG-TGAAGTCACATGTGTAGTACTAA
* * * **
51663074 GTGCAGGCTACTACGTGTACTGGATTGTTTATCG-CAT
64 GTGCAGGCTACTACGCGTACT-CAATGACT-TCGACAT
* * *
51663111 GTG-TAGTACTAAGTGCAGACTACTATGCGTATCA
1 GTGTTAGTACTAAGTGCAGGCTACTACGTGTATCA
51663145 GATAGCTTCG
Statistics
Matches: 116, Mismatches: 14, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
98 21 0.18
99 10 0.09
100 53 0.46
101 29 0.25
102 3 0.03
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.32
Consensus pattern (99 bp):
GTGTTAGTACTAAGTGCAGGCTACTACGTGTATCATAATGTGAAGTCACATGTGTAGTACTAAGT
GCAGGCTACTACGCGTACTCAATGACTTCGACAT
Found at i:51663265 original size:27 final size:26
Alignment explanation
Indices: 51663235--51663286 Score: 61
Period size: 25 Copynumber: 2.0 Consensus size: 26
51663225 GGAAAAATCG
51663235 ATAAAGTGGTAATATGTG-AAAGTTATT
1 ATAAAGT-G-AATATGTGTAAAGTTATT
* *
51663262 ATAAGGTGAATATGTGTAAATTTAT
1 ATAAAGTGAATATGTGTAAAGTTAT
51663287 GTTTATGAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
25 8 0.36
26 8 0.36
27 6 0.27
ACGTcount: A:0.40, C:0.00, G:0.21, T:0.38
Consensus pattern (26 bp):
ATAAAGTGAATATGTGTAAAGTTATT
Found at i:51665643 original size:39 final size:39
Alignment explanation
Indices: 51665587--51665757 Score: 272
Period size: 39 Copynumber: 4.3 Consensus size: 39
51665577 ACAAAGCATG
*
51665587 CGGGACTTTAAGCCCGGATATAATACCAGCACGAATGCCTT
1 CGGGAC-TT-AGCCCGGATATAACACCAGCACGAATGCCTT
*
51665628 CGGGACTTAGCCCGGATATAACACCAACACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
51665667 CGGGACTTAGCCCAGG-TATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCC-GGATATAACACCAGCACGAATGCCTT
* *
51665706 CGGTACTTATCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
51665745 CGGGACTTAGCCC
1 CGGGACTTAGCCC
51665758 AAATATAATT
Statistics
Matches: 121, Mismatches: 7, Indels: 6
0.90 0.05 0.04
Matches are distributed among these distances:
38 2 0.02
39 109 0.90
40 4 0.03
41 6 0.05
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (39 bp):
CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
Found at i:51667516 original size:19 final size:19
Alignment explanation
Indices: 51667492--51667532 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
51667482 GTTATAATAT
*
51667492 TAATATTCCTTTAATATTA
1 TAATATTCATTTAATATTA
*
51667511 TAATATTCATTTCATATTA
1 TAATATTCATTTAATATTA
51667530 TAA
1 TAA
51667533 AACAATTTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.39, C:0.10, G:0.00, T:0.51
Consensus pattern (19 bp):
TAATATTCATTTAATATTA
Found at i:51672442 original size:39 final size:39
Alignment explanation
Indices: 51672386--51672498 Score: 181
Period size: 39 Copynumber: 2.8 Consensus size: 39
51672376 ACAAAGCATG
*
51672386 CGGGACTTTAAGCCCGGATATAATACCAGCATGAATGCCTT
1 CGGGAC-TT-AGCCCGGATATAATACCAGCACGAATGCCTT
*
51672427 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAATACCAGCACGAATGCCTT
*
51672466 CAGGACTTAGCCCGGATATAATACCAGCACGAA
1 CGGGACTTAGCCCGGATATAATACCAGCACGAA
51672499 CCCTAGATCT
Statistics
Matches: 68, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
39 60 0.88
40 2 0.03
41 6 0.09
ACGTcount: A:0.31, C:0.27, G:0.22, T:0.19
Consensus pattern (39 bp):
CGGGACTTAGCCCGGATATAATACCAGCACGAATGCCTT
Found at i:51673057 original size:27 final size:25
Alignment explanation
Indices: 51673017--51673118 Score: 98
Period size: 27 Copynumber: 3.8 Consensus size: 25
51673007 AGCATGATTG
* *
51673017 CCAGAACATATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAG-CA
*
51673043 CCAGATACAGATAATCGTGGCAGAACCA
1 CCAGA-ACAGATAAT-GTGGCAG-AGCA
51673071 CCAGAACAGATATATGTGGCAGAGCTA
1 CCAGAACAGATA-ATGTGGCAGAGC-A
51673098 CCA-AATCAGATAATTGTGGCA
1 CCAGAA-CAGATAA-TGTGGCA
51673119 TAACCACCAG
Statistics
Matches: 65, Mismatches: 4, Indels: 13
0.79 0.05 0.16
Matches are distributed among these distances:
26 10 0.15
27 39 0.60
28 15 0.23
29 1 0.02
ACGTcount: A:0.39, C:0.21, G:0.22, T:0.19
Consensus pattern (25 bp):
CCAGAACAGATAATGTGGCAGAGCA
Found at i:51673108 original size:54 final size:54
Alignment explanation
Indices: 51673017--51673128 Score: 147
Period size: 54 Copynumber: 2.1 Consensus size: 54
51673007 AGCATGATTG
* *
51673017 CCAGAACATATAATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAACCA
1 CCAGAACAGATAATGTGACAGAGTCACCAAATACAGATAATCGTGGCAGAACCA
* * *
51673071 CCAGAACAGATATATGTGGCAGAG-CTACCAAAT-CAGATAATTGTGGCATAACCA
1 CCAGAACAGATA-ATGTGACAGAGTC-ACCAAATACAGATAATCGTGGCAGAACCA
51673125 CCAG
1 CCAG
51673129 GACACTTCCT
Statistics
Matches: 51, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
54 35 0.69
55 16 0.31
ACGTcount: A:0.39, C:0.22, G:0.21, T:0.18
Consensus pattern (54 bp):
CCAGAACAGATAATGTGACAGAGTCACCAAATACAGATAATCGTGGCAGAACCA
Found at i:51673127 original size:27 final size:27
Alignment explanation
Indices: 51673041--51673127 Score: 88
Period size: 27 Copynumber: 3.2 Consensus size: 27
51673031 GTGACAGAGT
* *
51673041 CACCAGATACAGATAATCGTGGCAGAAC
1 CACCAAAT-CAGATAATTGTGGCAGAAC
*
51673069 CACCAGAA-CAGAT-ATATGTGGCAGAGC
1 CACCA-AATCAGATAAT-TGTGGCAGAAC
* *
51673096 TACCAAATCAGATAATTGTGGCATAAC
1 CACCAAATCAGATAATTGTGGCAGAAC
51673123 CACCA
1 CACCA
51673128 GGACACTTCC
Statistics
Matches: 48, Mismatches: 7, Indels: 9
0.75 0.11 0.14
Matches are distributed among these distances:
26 4 0.08
27 36 0.75
28 7 0.15
29 1 0.02
ACGTcount: A:0.39, C:0.24, G:0.20, T:0.17
Consensus pattern (27 bp):
CACCAAATCAGATAATTGTGGCAGAAC
Found at i:51674574 original size:24 final size:24
Alignment explanation
Indices: 51674547--51674617 Score: 124
Period size: 24 Copynumber: 3.0 Consensus size: 24
51674537 CTAGATTTCG
**
51674547 TCCCTTATCTGCTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
51674571 TCCCTTATCAACTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
51674595 TCCCTTATCAACTCCTAAATCCT
1 TCCCTTATCAACTCCTAAATCCT
51674618 CTCCTGACAG
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 45 1.00
ACGTcount: A:0.25, C:0.38, G:0.01, T:0.35
Consensus pattern (24 bp):
TCCCTTATCAACTCCTAAATCCTA
Found at i:51676183 original size:17 final size:18
Alignment explanation
Indices: 51676147--51676184 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
51676137 TAGGAAATAA
*
51676147 AAATAAACACCTAAAAAT
1 AAATAAACAACTAAAAAT
*
51676165 AAATAAA-AACTAAAGAT
1 AAATAAACAACTAAAAAT
51676182 AAA
1 AAA
51676185 AAATTCCCCA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 11 0.61
18 7 0.39
ACGTcount: A:0.71, C:0.11, G:0.03, T:0.16
Consensus pattern (18 bp):
AAATAAACAACTAAAAAT
Found at i:51678074 original size:17 final size:18
Alignment explanation
Indices: 51678052--51678121 Score: 63
Period size: 17 Copynumber: 3.9 Consensus size: 18
51678042 AAACATAAAC
51678052 AAATTAAATAAAAA-TTA
1 AAATTAAATAAAAATTTA
* **
51678069 AAATTAAAGAAAAAGATA
1 AAATTAAATAAAAATTTA
*
51678087 AAA-AAAATAAAAATTTTA
1 AAATTAAATAAAAA-TTTA
* *
51678105 AAATTAATTAGAAATTT
1 AAATTAAATAAAAATTT
51678122 TCTTTTCAAA
Statistics
Matches: 41, Mismatches: 9, Indels: 5
0.75 0.16 0.09
Matches are distributed among these distances:
17 21 0.51
18 13 0.32
19 7 0.17
ACGTcount: A:0.67, C:0.00, G:0.04, T:0.29
Consensus pattern (18 bp):
AAATTAAATAAAAATTTA
Found at i:51685583 original size:30 final size:30
Alignment explanation
Indices: 51685549--51685609 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
51685539 TCCTTAACTC
51685549 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
51685579 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
51685609 A
1 A
51685610 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:51691708 original size:37 final size:37
Alignment explanation
Indices: 51691667--51691739 Score: 137
Period size: 37 Copynumber: 2.0 Consensus size: 37
51691657 ACATGGCATG
51691667 AATTGTAATGGTAAATAAAAAAAACAATTGAAAACTA
1 AATTGTAATGGTAAATAAAAAAAACAATTGAAAACTA
*
51691704 AATTGTAATGGTAAATAAAAAAAGCAATTGAAAACT
1 AATTGTAATGGTAAATAAAAAAAACAATTGAAAACT
51691740 GAGAATATTG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.58, C:0.05, G:0.12, T:0.25
Consensus pattern (37 bp):
AATTGTAATGGTAAATAAAAAAAACAATTGAAAACTA
Found at i:51700927 original size:26 final size:24
Alignment explanation
Indices: 51700886--51700945 Score: 75
Period size: 26 Copynumber: 2.4 Consensus size: 24
51700876 TTATTTCATT
* * *
51700886 AAATAAAAAAATTTAAAAATATAA
1 AAATAAATATATTTAAAAACATAA
51700910 TAAATCAAATATATTTAAAAACATAA
1 -AAAT-AAATATATTTAAAAACATAA
51700936 AAATAAATAT
1 AAATAAATAT
51700946 TAAAACAAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
24 6 0.19
25 8 0.26
26 17 0.55
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.28
Consensus pattern (24 bp):
AAATAAATATATTTAAAAACATAA
Found at i:51700957 original size:22 final size:22
Alignment explanation
Indices: 51700916--51700974 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 22
51700906 ATAATAAATC
* *
51700916 AAATATAT-TTAAAA-ACATAA
1 AAATAAATATTAAAACAAATAA
51700936 AAATAAATATTAAAACAAATAA
1 AAATAAATATTAAAACAAATAA
*
51700958 AAAT-AATACTAAAACAA
1 AAATAAATATTAAAACAA
51700975 TTCTTAAAGC
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
20 7 0.21
21 18 0.53
22 9 0.26
ACGTcount: A:0.69, C:0.07, G:0.00, T:0.24
Consensus pattern (22 bp):
AAATAAATATTAAAACAAATAA
Found at i:51701049 original size:23 final size:24
Alignment explanation
Indices: 51701010--51701073 Score: 62
Period size: 22 Copynumber: 2.7 Consensus size: 24
51701000 AATATAGTAA
* * *
51701010 AAAATAGTT-ATATTAAAAAT-TT
1 AAAATAATTAATAATAAAAATAAT
51701032 AAAATAATTAATAAT-AAAATAAT
1 AAAATAATTAATAATAAAAATAAT
51701055 AAAATATATTAATATATAA
1 AAAATA-ATTAATA-ATAA
51701074 TTCGGGCCGG
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
22 13 0.38
23 11 0.32
24 7 0.21
25 2 0.06
26 1 0.03
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (24 bp):
AAAATAATTAATAATAAAAATAAT
Found at i:51705745 original size:47 final size:47
Alignment explanation
Indices: 51705688--51705991 Score: 428
Period size: 47 Copynumber: 6.4 Consensus size: 47
51705678 ATTGATGTAC
* * *
51705688 AAGTATATATATGTGATAGGGCCGAGTGGCCAACGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAACGTGATGAATGTGA
* * *
51705735 AAGTATATATATATGTGATAGGGCCGAGTGGCCAACGTGATGAATGTGA
1 AAG--TGTATATATGTGATAAGGCCGAATGGCCAACGTGATGAATGTGA
* * * *
51705784 AAGTGTATATATGTGATAGGGTCGAGTGACCAACGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAACGTGATGAATGTGA
*
51705831 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAACGTGATGAATGTGA
* * * *
51705878 AAGTGTATATATGAGATAAGACCTAATGGCCAATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAACGTGATGAATGTGA
* *
51705925 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAACGTGATGAATGTGA
*
51705972 AAGTGTATAAATGTGATAAG
1 AAGTGTATATATGTGATAAG
51705992 TCCCGAAGGG
Statistics
Matches: 239, Mismatches: 16, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
47 192 0.80
49 47 0.20
ACGTcount: A:0.34, C:0.09, G:0.30, T:0.27
Consensus pattern (47 bp):
AAGTGTATATATGTGATAAGGCCGAATGGCCAACGTGATGAATGTGA
Found at i:51708425 original size:27 final size:27
Alignment explanation
Indices: 51708388--51708591 Score: 241
Period size: 27 Copynumber: 7.6 Consensus size: 27
51708378 TAAATTGTAC
*
51708388 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
51708415 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * **
51708442 TGCACTAAGTGTGCGAAATGAAAATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
*
51708468 ATGCACTAAGTGTGCGAATTGACCATGT
1 A-GCACTAAGTGTGCGAATTGACTATGT
* *
51708496 GGCACTAAGTGTGCGAGATTGATTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* *
51708524 AGCACTAAGTGTGCG-ATTGATTACGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
51708550 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
51708577 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
51708592 GACTCAATAT
Statistics
Matches: 155, Mismatches: 18, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
26 25 0.16
27 107 0.69
28 23 0.15
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:51718348 original size:48 final size:48
Alignment explanation
Indices: 51718286--51718594 Score: 546
Period size: 48 Copynumber: 6.4 Consensus size: 48
51718276 TATATATGTG
51718286 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
51718334 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
51718382 CGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* * *
51718430 CGTGGCAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
51718478 CGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
51718526 TGTGGTAAAGCCGAATGGCTAATGCGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
51718574 TGTGGTAAAGCCGAATGGCTA
1 TGTGGTAAAGCCGAATGGCTA
51718595 GTGATTCAGC
Statistics
Matches: 254, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 254 1.00
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.29
Consensus pattern (48 bp):
TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
Found at i:51718817 original size:37 final size:37
Alignment explanation
Indices: 51718767--51718980 Score: 392
Period size: 37 Copynumber: 5.8 Consensus size: 37
51718757 GGAAATATAT
51718767 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
51718804 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
51718841 TCCGGGTAAGACCCGATGAATACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
51718878 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
51718915 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
51718952 TCCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
51718981 GGACTATTCG
Statistics
Matches: 171, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 171 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:51738693 original size:17 final size:19
Alignment explanation
Indices: 51738651--51738694 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
51738641 ATGAAATTTT
*
51738651 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
51738670 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
51738688 AA-TATTA
1 AATTATTA
51738695 CTGTATGTAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:51738795 original size:3 final size:3
Alignment explanation
Indices: 51738787--51738811 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
51738777 TATTTATAAA
51738787 ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT A
51738812 GATAGGAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:51741632 original size:40 final size:40
Alignment explanation
Indices: 51741577--51741838 Score: 366
Period size: 40 Copynumber: 6.6 Consensus size: 40
51741567 TATTCGGATG
*
51741577 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
51741617 ATAACCGAGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
51741657 ATAACCGGGCTAAGTCCCGAAGGTATTTGTACGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
51741697 ATATCCGGGCTAAGTCCAGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
51741737 ATATCTGGGCTAAGTCCCGAAGGCATTTGTCCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
51741777 ATAACCGGGCTAAATCTCGAAGGCATTTGAGCGAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
* *
51741817 ATATCC-GGCTAATTCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
51741839 TACTTGGTTT
Statistics
Matches: 198, Mismatches: 23, Indels: 3
0.88 0.10 0.01
Matches are distributed among these distances:
39 16 0.08
40 182 0.92
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:51745780 original size:39 final size:40
Alignment explanation
Indices: 51745625--51745827 Score: 299
Period size: 40 Copynumber: 5.2 Consensus size: 40
51745615 AAACCAAGTA
* * *
51745625 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
51745664 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
51745704 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
51745744 CCTTCGGGACTTAGCCCGGAT-TAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
51745783 CCTTC-GGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
51745822 CCTTCG
1 CCTTCG
51745828 TTATCATCCG
Statistics
Matches: 152, Mismatches: 7, Indels: 9
0.90 0.04 0.05
Matches are distributed among these distances:
38 14 0.09
39 57 0.38
40 81 0.53
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:51753047 original size:40 final size:40
Alignment explanation
Indices: 51752933--51753195 Score: 286
Period size: 40 Copynumber: 6.7 Consensus size: 40
51752923 GCTCCTCGTT
* * * * *
51752933 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
51752973 C-AATGCCTTCGGGACTTAA-CCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
*
51753011 CGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
*
51753051 CGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
* * * * *
51753091 CAAAGGCCTTCGGGGCTTAACCCGGAACTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAATAACTCGCA
** * * * *
51753131 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCA
*
51753172 CAAA-GCCTTC-GGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
51753196 CAGCATTCAA
Statistics
Matches: 196, Mismatches: 21, Indels: 13
0.85 0.09 0.06
Matches are distributed among these distances:
38 17 0.09
39 48 0.24
40 120 0.61
41 11 0.06
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
Found at i:51753669 original size:18 final size:19
Alignment explanation
Indices: 51753633--51753670 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
51753623 CTTTTCTTTA
51753633 GCTCACGGCAATGGGGGGG
1 GCTCACGGCAATGGGGGGG
51753652 GCTCACGGCAATGGGGGGG
1 GCTCACGGCAATGGGGGGG
51753671 ACAAACACTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.16, C:0.21, G:0.53, T:0.11
Consensus pattern (19 bp):
GCTCACGGCAATGGGGGGG
Found at i:51760111 original size:119 final size:119
Alignment explanation
Indices: 51759936--51760197 Score: 307
Period size: 119 Copynumber: 2.2 Consensus size: 119
51759926 TCCTCGTTCA
* * * * *
51759936 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACTTAACCCGG-AT
1 AATGCCTTCGGGACTTAGCCCGGATTTAATAACTCACACAAGGCCTTCGGGACTTAACCCGGAAC
* * *
51760000 TTAATAACTCGCACGAATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCAC
66 TT-ATAACTCGCACAAATGCCTTC-GGATCTTAACCCGGATATAATAACTTAGCAC
* *
51760054 GAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACAAAGGCCTTCGGG-CTTAACCCGGA
1 -AATGCCTTCGGGACTTAGCCCGGATTTAATAACTCACAC-AAGGCCTTCGGGACTTAACCCGGA
* * ** * *
51760118 ACTTGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCAC
64 ACTTATAACTCGCACAAATGCCTTCGGATCTTAACCCGGATATAATAACTTAGCAC
*
51760174 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
51760198 CAGCATTCAA
Statistics
Matches: 121, Mismatches: 18, Indels: 8
0.82 0.12 0.05
Matches are distributed among these distances:
118 3 0.02
119 99 0.82
120 19 0.16
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (119 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAATAACTCACACAAGGCCTTCGGGACTTAACCCGGAAC
TTATAACTCGCACAAATGCCTTCGGATCTTAACCCGGATATAATAACTTAGCAC
Found at i:51760130 original size:39 final size:40
Alignment explanation
Indices: 51759934--51760197 Score: 304
Period size: 40 Copynumber: 6.7 Consensus size: 40
51759924 GCTCCTCGTT
* * * * *
51759934 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
51759974 C-AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
*
51760013 CGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
*
51760053 CGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
* * * *
51760093 CAAAGGCCTTCGGG-CTTAACCCGGAACTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAATAACTCGCA
** * * * *
51760132 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCA
*
51760173 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
51760198 CAGCATTCAA
Statistics
Matches: 198, Mismatches: 19, Indels: 14
0.86 0.08 0.06
Matches are distributed among these distances:
38 2 0.01
39 64 0.32
40 121 0.61
41 11 0.06
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
Found at i:51760181 original size:79 final size:81
Alignment explanation
Indices: 51759934--51760197 Score: 263
Period size: 79 Copynumber: 3.3 Consensus size: 81
51759924 GCTCCTCGTT
* * * ** * *
51759934 CAAATGCCTTCGGGACATAGCCCGG-TTTTAGTAACTCACAC-AATGCCTTCGGGACTTAACCCG
1 CAAAGGCCTTCGGGACTTAACCCGGAACTTAATAACTCGCACAAATGCCTTCGGGACTTAACCCG
* *
51759997 GATTTAATAACTCGCA
66 GATATAATAACTAGCA
* * * *
51760013 CGAATGCCTTCGGGACTTAACCCGG-ATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCG
1 CAAAGGCCTTCGGGACTTAACCCGGAACTTAATAACTCGCACAAATGCCTTCGGGACTTAACCCG
* *
51760077 GATTTAATAACTCGCA
66 GATATAATAACTAGCA
* * **
51760093 CAAAGGCCTTCGGG-CTTAACCCGGAACTT-GTATCTCGCACAAATGCCTTC-GGATCTTAGTCC
1 CAAAGGCCTTCGGGACTTAACCCGGAACTTAATAACTCGCACAAATGCCTTCGGGA-CTTAACCC
* *
51760155 GGATATAGTCACTTAGCA
65 GGATATAATAAC-TAGCA
*
51760173 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAAGGCCTTCGGGACTTAACCCGGA
51760198 CAGCATTCAA
Statistics
Matches: 161, Mismatches: 19, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
78 3 0.02
79 87 0.54
80 71 0.44
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (81 bp):
CAAAGGCCTTCGGGACTTAACCCGGAACTTAATAACTCGCACAAATGCCTTCGGGACTTAACCCG
GATATAATAACTAGCA
Found at i:51763480 original size:40 final size:40
Alignment explanation
Indices: 51763418--51763621 Score: 265
Period size: 40 Copynumber: 5.2 Consensus size: 40
51763408 AAGCCAAGTA
* * * *
51763418 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCAAACG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
51763457 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCATAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
51763497 CCTTCGGGACTTAG-CCGGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
51763536 CCTTCGGGACTTAGCCCGGGAT-TAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCC-GGATATAGTAACTCGCACAAATG
* *
51763576 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
51763616 CCTTCG
1 CCTTCG
51763622 TTATCATCCG
Statistics
Matches: 147, Mismatches: 12, Indels: 11
0.86 0.07 0.06
Matches are distributed among these distances:
39 52 0.35
40 91 0.62
41 4 0.03
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:51763549 original size:79 final size:78
Alignment explanation
Indices: 51763418--51763621 Score: 261
Period size: 79 Copynumber: 2.6 Consensus size: 78
51763408 AAGCCAAGTA
* * * * *
51763418 CCTTCGGGATTTAACCGGATATAGCTACTCGCTCAAACGCCTTCGGGACTTAGCCC-GGATATAG
1 CCTTCGGGACTTAGCCGGATATAG-TACTCACACAAATGCCTTCGGGACTTAGCCCGGGAT-TAG
* *
51763482 TAGCTCGCATAAATG
64 TAACTCGCACAAATG
51763497 CCTTCGGGACTTAGCCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGCCCGGGATTAGT
1 CCTTCGGGACTTAGCCGGATATAGT-ACTCACACAAATGCCTTCGGGACTTAGCCCGGGATTAGT
51763562 AACTCGCACAAATG
65 AACTCGCACAAATG
51763576 CCTTCGGGACTTAGCCCGGA-ATTAGTCACT-AGCACAAATGCCTTCG
1 CCTTCGGGACTTAG-CCGGATA-TAGT-ACTCA-CACAAATGCCTTCG
51763622 TTATCATCCG
Statistics
Matches: 112, Mismatches: 8, Indels: 9
0.87 0.06 0.07
Matches are distributed among these distances:
78 1 0.01
79 81 0.72
80 30 0.27
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (78 bp):
CCTTCGGGACTTAGCCGGATATAGTACTCACACAAATGCCTTCGGGACTTAGCCCGGGATTAGTA
ACTCGCACAAATG
Found at i:51771095 original size:21 final size:21
Alignment explanation
Indices: 51771069--51771109 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
51771059 ACTATAACCA
51771069 GGCTAAGTCCCGAAGGCATTG
1 GGCTAAGTCCCGAAGGCATTG
51771090 GGCTAAGTCCCGAAGGCATT
1 GGCTAAGTCCCGAAGGCATT
51771110 TGTGCGAGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.24, C:0.24, G:0.32, T:0.20
Consensus pattern (21 bp):
GGCTAAGTCCCGAAGGCATTG
Found at i:51771123 original size:61 final size:61
Alignment explanation
Indices: 51771028--51771149 Score: 226
Period size: 61 Copynumber: 2.0 Consensus size: 61
51771018 GATGATAACC
51771028 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCAGGCTAAGTCCCGAAGGCATT
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCAGGCTAAGTCCCGAAGGCATT
* *
51771089 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATT
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCAGGCTAAGTCCCGAAGGCATT
51771150 TGTGCGAGTT
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
61 59 1.00
ACGTcount: A:0.25, C:0.23, G:0.29, T:0.24
Consensus pattern (61 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCAGGCTAAGTCCCGAAGGCATT
Found at i:51771144 original size:40 final size:40
Alignment explanation
Indices: 51771089--51771224 Score: 204
Period size: 40 Copynumber: 3.4 Consensus size: 40
51771079 CGAAGGCATT
51771089 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
*
51771129 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
* *
51771169 GGGCTAAATCCCGAAGGCATTTGAGCGAG-TAGCTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCC
* *
51771209 -GGCTAATTCCCAAAGG
1 GGGCTAAGTCCCGAAGG
51771225 TACTTGGTTT
Statistics
Matches: 89, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
39 16 0.18
40 73 0.82
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
Found at i:51780835 original size:17 final size:18
Alignment explanation
Indices: 51780813--51780846 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
51780803 TCACATTGAA
51780813 GTGTTTT-AGTGAAAACC
1 GTGTTTTCAGTGAAAACC
*
51780830 GTGTTTTCATTGAAAAC
1 GTGTTTTCAGTGAAAAC
51780847 TCTTCTTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.29, C:0.12, G:0.21, T:0.38
Consensus pattern (18 bp):
GTGTTTTCAGTGAAAACC
Found at i:51781960 original size:28 final size:28
Alignment explanation
Indices: 51781928--51782013 Score: 109
Period size: 28 Copynumber: 3.0 Consensus size: 28
51781918 TACCTGTATC
* * **
51781928 TGGCCTATTATGCCCATTCATGTTCATA
1 TGGCCCATTAGGCCCATTCACATTCATA
* *
51781956 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCC-ATTCACATTCATA
51781985 TGGCCCATTAGGCCCATTCACATTCATA
1 TGGCCCATTAGGCCCATTCACATTCATA
51782013 T
1 T
51782014 TCATGCTCAC
Statistics
Matches: 49, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
28 25 0.51
29 24 0.49
ACGTcount: A:0.26, C:0.28, G:0.14, T:0.33
Consensus pattern (28 bp):
TGGCCCATTAGGCCCATTCACATTCATA
Found at i:51781990 original size:29 final size:28
Alignment explanation
Indices: 51781950--51782013 Score: 101
Period size: 29 Copynumber: 2.2 Consensus size: 28
51781940 CCCATTCATG
51781950 TTCATATGGCCCATTAGGCCCAAATCACA
1 TTCATATGGCCCATTAGGCCC-AATCACA
* *
51781979 TTTATATGGCCCATTAGGCCCATTCACA
1 TTCATATGGCCCATTAGGCCCAATCACA
51782007 TTCATAT
1 TTCATAT
51782014 TCATGCTCAC
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
28 12 0.38
29 20 0.62
ACGTcount: A:0.28, C:0.28, G:0.12, T:0.31
Consensus pattern (28 bp):
TTCATATGGCCCATTAGGCCCAATCACA
Found at i:51786360 original size:57 final size:58
Alignment explanation
Indices: 51786296--51786406 Score: 170
Period size: 58 Copynumber: 1.9 Consensus size: 58
51786286 AAATTCACAT
* * *
51786296 ACCTGTATCTGGCCCATTAAG-CCCATTCATATTTATATGGCCCATTAGGCCCAAATC
1 ACCTGTATATGGCCCATTAAGCCCCAATCACATTTATATGGCCCATTAGGCCCAAATC
* *
51786353 ACCTGTATATGGCCCATTAGGCCCCAATCACATTTATATGGCCCGTTAGGCCCA
1 ACCTGTATATGGCCCATTAAGCCCCAATCACATTTATATGGCCCATTAGGCCCA
51786407 GTCACATTCA
Statistics
Matches: 48, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
57 19 0.40
58 29 0.60
ACGTcount: A:0.25, C:0.31, G:0.16, T:0.28
Consensus pattern (58 bp):
ACCTGTATATGGCCCATTAAGCCCCAATCACATTTATATGGCCCATTAGGCCCAAATC
Found at i:51786419 original size:28 final size:28
Alignment explanation
Indices: 51786305--51786419 Score: 140
Period size: 29 Copynumber: 4.0 Consensus size: 28
51786295 TACCTGTATC
* * *
51786305 TGGCCCATTAAGCCCATTCATATTTATA
1 TGGCCCATTAGGCCCAATCACATTTATA
* *
51786333 TGGCCCATTAGGCCCAAATCACCTGTATA
1 TGGCCCATTAGGCCC-AATCACATTTATA
51786362 TGGCCCATTAGGCCCCAATCACATTTATA
1 TGGCCCATTAGG-CCCAATCACATTTATA
* * *
51786391 TGGCCCGTTAGGCCCAGTCACATTCATA
1 TGGCCCATTAGGCCCAATCACATTTATA
51786419 T
1 T
51786420 TCATGCTCAC
Statistics
Matches: 75, Mismatches: 10, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
28 29 0.39
29 43 0.57
30 3 0.04
ACGTcount: A:0.26, C:0.30, G:0.16, T:0.29
Consensus pattern (28 bp):
TGGCCCATTAGGCCCAATCACATTTATA
Found at i:51786654 original size:16 final size:16
Alignment explanation
Indices: 51786630--51786674 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
51786620 CTAGCCAAAC
* *
51786630 TTTCGGCTTTTCGGCA
1 TTTCAGCTTTTCAGCA
51786646 TTTCAGCTTTTCAGCA
1 TTTCAGCTTTTCAGCA
* *
51786662 TTTTAGCATTTCA
1 TTTCAGCTTTTCA
51786675 TCTTTTGCCG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.16, C:0.22, G:0.16, T:0.47
Consensus pattern (16 bp):
TTTCAGCTTTTCAGCA
Found at i:51787878 original size:27 final size:26
Alignment explanation
Indices: 51787843--51787954 Score: 134
Period size: 27 Copynumber: 4.2 Consensus size: 26
51787833 AGCATGGCTG
* *
51787843 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
51787869 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
* *
51787897 CCAGAACAGAAATATGTGGTAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
51787924 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
51787951 CCAG
1 CCAG
51787955 GACGCTTCCT
Statistics
Matches: 74, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
26 6 0.08
27 51 0.69
28 17 0.23
ACGTcount: A:0.38, C:0.22, G:0.24, T:0.16
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:51791035 original size:79 final size:79
Alignment explanation
Indices: 51790827--51791035 Score: 303
Period size: 79 Copynumber: 2.7 Consensus size: 79
51790817 ATTTGATGTA
**
51790827 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTGTATCCGGACTT-AAGGTCCGCAAGCT
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTGTATCCGGACTTAAAGACCCGCAAGCT
51790891 TCGTGCTGGAATTG
66 TCGTGCTGGAATTG
* * * *
51790905 TATCCGGACTTAAGGTCCGCAGGCTTCATGCTGGAATTGTATCAGGGCTTAAAGACCCGCAGGCT
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTGTATCCGGACTTAAAGACCCGCAAGCT
51790970 TCGTGCTGGAATTG
66 TCGTGCTGGAATTG
* * * * * *
51790984 TATCCGGACTTAAGATCTGCAGGCTTCGTACTGGTACTATATCCGGACTTAA
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTGTATCCGGACTTAA
51791036 GGTCTGCAGG
Statistics
Matches: 115, Mismatches: 15, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
78 47 0.41
79 68 0.59
ACGTcount: A:0.22, C:0.23, G:0.27, T:0.28
Consensus pattern (79 bp):
TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTGTATCCGGACTTAAAGACCCGCAAGCT
TCGTGCTGGAATTG
Found at i:51791072 original size:118 final size:118
Alignment explanation
Indices: 51790843--51791088 Score: 341
Period size: 118 Copynumber: 2.1 Consensus size: 118
51790833 GACTTAAGGT
* * * *
51790843 CCGCAGGCTTCGTGCTGGAATTGTATCCGGACTTAAGGTCCGCAAGCTTCGTGCTGGAATTGTAT
1 CCGCAGGCTTCGTGCTGGAATTGTATCCGGACTTAAGATCCGCAAGCTTCGTACTGGAACTATAT
* * *
51790908 CCGGACTTAAGGTCCGCAGGCTTCATGCTGGAATTGTATCAGGGCTTAAAGAC
66 CCGGACTTAAGGTCCGCAGGCTTCATACTGGAACTATATCAGGGCTTAAAGAC
* * *
51790961 CCGCAGGCTTCGTGCTGGAATTGTATCCGGACTTAAGATCTGCAGGCTTCGTACTGGTACTATAT
1 CCGCAGGCTTCGTGCTGGAATTGTATCCGGACTTAAGATCCGCAAGCTTCGTACTGGAACTATAT
* * * *
51791026 CCGGACTTAAGGTCTGCAGGCTTCGTACTGGTACTATATCCA-GGCTTAAAGTC
66 CCGGACTTAAGGTCCGCAGGCTTCATACTGGAACTATAT-CAGGGCTTAAAGAC
*
51791079 CCGTAGGCTT
1 CCGCAGGCTT
51791089 TGTGTTGGTG
Statistics
Matches: 112, Mismatches: 15, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
118 110 0.98
119 2 0.02
ACGTcount: A:0.21, C:0.24, G:0.27, T:0.28
Consensus pattern (118 bp):
CCGCAGGCTTCGTGCTGGAATTGTATCCGGACTTAAGATCCGCAAGCTTCGTACTGGAACTATAT
CCGGACTTAAGGTCCGCAGGCTTCATACTGGAACTATATCAGGGCTTAAAGAC
Found at i:51791074 original size:39 final size:39
Alignment explanation
Indices: 51790827--51791056 Score: 325
Period size: 39 Copynumber: 5.9 Consensus size: 39
51790817 ATTTGATGTA
51790827 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
*
51790866 TATCCGGACTTAAGGTCCGCAAGCTTCGTGCTGGAATTG
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
*
51790905 TATCCGGACTTAAGGTCCGCAGGCTTCATGCTGGAATTG
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
* * **
51790944 TATCAGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTG
1 TATCCGGACTT-AAGGTCCGCAGGCTTCGTGCTGGAATTG
* * * * * *
51790984 TATCCGGACTTAAGATCTGCAGGCTTCGTACTGGTACTA
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
* *
51791023 TATCCGGACTTAAGGTCTGCAGGCTTCGTACTGG
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGG
51791057 TACTATATCC
Statistics
Matches: 173, Mismatches: 17, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
39 139 0.80
40 34 0.20
ACGTcount: A:0.20, C:0.23, G:0.28, T:0.28
Consensus pattern (39 bp):
TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
Found at i:51792021 original size:9 final size:9
Alignment explanation
Indices: 51792007--51792051 Score: 63
Period size: 9 Copynumber: 4.9 Consensus size: 9
51791997 CTCTAGTTTT
51792007 TGAAAATTC
1 TGAAAATTC
51792016 TGAAAATTC
1 TGAAAATTC
51792025 TGAAAATTC
1 TGAAAATTC
* *
51792034 TGAATATTAA
1 TGAAAATT-C
51792044 TGAAAATT
1 TGAAAATT
51792052 GATTTTGATT
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
9 25 0.78
10 7 0.22
ACGTcount: A:0.47, C:0.07, G:0.11, T:0.36
Consensus pattern (9 bp):
TGAAAATTC
Found at i:51793872 original size:93 final size:93
Alignment explanation
Indices: 51793760--51793931 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
51793750 CGCCCATAAG
* * *
51793760 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
51793825 ACGAGCTCGGATGCCTAGTTACATTTCA
66 ACGAGCTCGGATGCCTAGTTACATTTCA
*
51793853 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
*
51793918 ACGAGTTCGGATGC
66 ACGAGCTCGGATGC
51793932 TCAACCATCC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATTTCA
Found at i:51793928 original size:46 final size:46
Alignment explanation
Indices: 51793753--51793928 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
51793743 TATAACCCGC
* *
51793753 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
51793799 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA---C-A-TTCGCAT
* * *
51793849 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* * *
51793892 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA
51793929 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 63 0.58
47 28 0.26
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:51802431 original size:28 final size:26
Alignment explanation
Indices: 51802380--51802457 Score: 93
Period size: 27 Copynumber: 2.9 Consensus size: 26
51802370 CTGCCAGAAT
* * *
51802380 AGATAATGTGACTGAGTCACCAGATAC
1 AGATAATGTGGCAGAGCCACCAGAT-C
51802407 AGATAATCGTGGCAGAGCCACCAGATC
1 AGATAAT-GTGGCAGAGCCACCAGATC
*
51802434 AGATAATTGTGGCATAGCCACCAG
1 AGATAA-TGTGGCAGAGCCACCAG
51802458 GACGCTTCCT
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
27 29 0.64
28 16 0.36
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (26 bp):
AGATAATGTGGCAGAGCCACCAGATC
Found at i:51811939 original size:28 final size:28
Alignment explanation
Indices: 51811907--51811976 Score: 99
Period size: 28 Copynumber: 2.5 Consensus size: 28
51811897 ATAGTAAGTC
51811907 CGCACACTTAGTGCT-TA-ATAGTCAAACT
1 CGCACACTTAGTGCTATACA-A-TCAAACT
*
51811935 CGCACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAATCAAACT
51811963 CGCACACTTAGTGC
1 CGCACACTTAGTGC
51811977 CAATCTCATT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
28 35 0.90
29 3 0.08
30 1 0.03
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAATCAAACT
Found at i:51819723 original size:28 final size:28
Alignment explanation
Indices: 51819691--51819760 Score: 99
Period size: 28 Copynumber: 2.5 Consensus size: 28
51819681 ATAGTAAGTC
51819691 CGCACACTTAGTGCT-TA-ATAGTCAAACT
1 CGCACACTTAGTGCTATACA-A-TCAAACT
*
51819719 CGCACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAATCAAACT
51819747 CGCACACTTAGTGC
1 CGCACACTTAGTGC
51819761 CAATCTCATT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
28 35 0.90
29 3 0.08
30 1 0.03
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAATCAAACT
Found at i:51825057 original size:17 final size:17
Alignment explanation
Indices: 51825035--51825068 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
51825025 CAAAACATAC
51825035 TTATAACATCATGTTTT
1 TTATAACATCATGTTTT
*
51825052 TTATAATATCATGTTTT
1 TTATAACATCATGTTTT
51825069 ACTTATGAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.29, C:0.09, G:0.06, T:0.56
Consensus pattern (17 bp):
TTATAACATCATGTTTT
Found at i:51836322 original size:12 final size:11
Alignment explanation
Indices: 51836305--51836367 Score: 51
Period size: 12 Copynumber: 5.7 Consensus size: 11
51836295 TAAAATAATA
51836305 AAAAGAAAAAT
1 AAAAGAAAAAT
51836316 GAAAAGAAAAAT
1 -AAAAGAAAAAT
*
51836328 AAAA-ATAACAT
1 AAAAGA-AAAAT
*
51836339 -AAA-TAAAAT
1 AAAAGAAAAAT
*
51836348 AAAATAAAAAT
1 AAAAGAAAAAT
51836359 AAGAAGAAA
1 AA-AAGAAA
51836368 TAAAAAAATA
Statistics
Matches: 42, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
9 4 0.10
10 7 0.17
11 15 0.36
12 16 0.38
ACGTcount: A:0.78, C:0.02, G:0.08, T:0.13
Consensus pattern (11 bp):
AAAAGAAAAAT
Found at i:51836358 original size:43 final size:42
Alignment explanation
Indices: 51836297--51836378 Score: 105
Period size: 43 Copynumber: 1.9 Consensus size: 42
51836287 TTTCAAAATA
*
51836297 AAATAATAAAAAGAAAAATGAA-AAGAAA-AATAAAAATAACAT
1 AAATAAAAAAAAGAAAAAT-AAGAAGAAATAA-AAAAATAACAT
*
51836339 AAATAAAATAAAATAAAAATAAGAAGAAATAAAAAAATAA
1 AAATAAAA-AAAAGAAAAATAAGAAGAAATAAAAAAATAA
51836379 GAGGATTCAA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
42 9 0.26
43 24 0.69
44 2 0.06
ACGTcount: A:0.78, C:0.01, G:0.06, T:0.15
Consensus pattern (42 bp):
AAATAAAAAAAAGAAAAATAAGAAGAAATAAAAAAATAACAT
Found at i:51836360 original size:20 final size:20
Alignment explanation
Indices: 51836291--51836356 Score: 59
Period size: 20 Copynumber: 3.5 Consensus size: 20
51836281 TATGTCTTTC
*
51836291 AAAATAAAAT-AATAAAAAGA
1 AAAATAAAATAAAT-AAAATA
* *
51836311 AAAATGAAA-AGA-AAAATA
1 AAAATAAAATAAATAAAATA
*
51836329 AAAATAACATAAATAAAAT-
1 AAAATAAAATAAATAAAATA
51836348 AAAATAAAA
1 AAAATAAAA
51836357 ATAAGAAGAA
Statistics
Matches: 36, Mismatches: 7, Indels: 7
0.72 0.14 0.14
Matches are distributed among these distances:
18 12 0.33
19 10 0.28
20 14 0.39
ACGTcount: A:0.79, C:0.02, G:0.05, T:0.15
Consensus pattern (20 bp):
AAAATAAAATAAATAAAATA
Found at i:51839002 original size:13 final size:13
Alignment explanation
Indices: 51838980--51839012 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
51838970 AAGGGTTTGT
51838980 TTAT-TAAACTAA
1 TTATCTAAACTAA
51838992 TTATCTAAACTAA
1 TTATCTAAACTAA
*
51839005 TTAACTAA
1 TTATCTAA
51839013 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:51845302 original size:40 final size:40
Alignment explanation
Indices: 51845251--51845435 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
51845241 GCTACTCATT
* *
51845251 CAAATGCCTTCGGGACATAGCCCAG-TTGTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
51845291 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
51845331 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
51845370 CAAGTGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
51845411 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
51845436 CATCATTCGA
Statistics
Matches: 125, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
38 2 0.02
39 32 0.26
40 79 0.63
41 12 0.10
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Done.