Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 159 of 362
Found at i:52208133 original size:40 final size:40
Alignment explanation
Indices: 52208088--52208239 Score: 189
Period size: 40 Copynumber: 3.8 Consensus size: 40
52208078 ATAACCACAA
* * *
52208088 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
* *
52208128 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
* * *
52208168 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* * *
52208208 GCATAAATGCCTTCGGGACTTAGCCCAGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
52208240 CATTCAAATG
Statistics
Matches: 100, Mismatches: 11, Indels: 3
0.88 0.10 0.03
Matches are distributed among these distances:
39 1 0.01
40 95 0.95
41 4 0.04
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
Found at i:52213723 original size:47 final size:46
Alignment explanation
Indices: 52213654--52213826 Score: 217
Period size: 47 Copynumber: 3.7 Consensus size: 46
52213644 GGTAAGGTGC
*
52213654 CGATGCCATGTCCCAGACATGGTCTTACATTAGCTCATATCTC-AAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACT-GCT-ATATCTCGAAGT
*
52213701 CGATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCTCGTAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTG-CTAT-ATCTCGAAGT
* * * *
52213749 CGATG-CATGTCCTAGACAT-GTTTTACACTGGCTTACATCTCGAGGT
1 CGATGCCATGTCCCAGACATGGTCTTACACT-GC-TATATCTCGAAGT
52213795 CGATGCCATGTCCCAGACATGGTCTTACACTG
1 CGATGCCATGTCCCAGACATGGTCTTACACTG
52213827 ACATATGGGT
Statistics
Matches: 110, Mismatches: 9, Indels: 14
0.83 0.07 0.11
Matches are distributed among these distances:
46 26 0.24
47 67 0.61
48 17 0.15
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (46 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGCTATATCTCGAAGT
Found at i:52213821 original size:94 final size:95
Alignment explanation
Indices: 52213654--52213828 Score: 264
Period size: 94 Copynumber: 1.9 Consensus size: 95
52213644 GGTAAGGTGC
* *
52213654 CGATGCCATGTCCCAGACATGGTCTTACATTAGCTCATATCTCAAGTCGATGCCATGTCCCAGAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATCTCAAGTCGATGCCATGTCCCAGAC
52213719 ATGGTCTTACACTGACTATCATCTCGTAGT
66 ATGGTCTTACACTGACTATCATCTCGTAGT
* * * * *
52213749 CGATG-CATGTCCTAGACAT-GTTTTACACTGGCTTACATCTCGAGGTCGATGCCATGTCCCAGA
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATCTC-AAGTCGATGCCATGTCCCAGA
52213812 CATGGTCTTACACTGAC
65 CATGGTCTTACACTGAC
52213829 ATATGGGTTA
Statistics
Matches: 72, Mismatches: 7, Indels: 3
0.88 0.09 0.04
Matches are distributed among these distances:
93 17 0.24
94 50 0.69
95 5 0.07
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.29
Consensus pattern (95 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATCTCAAGTCGATGCCATGTCCCAGAC
ATGGTCTTACACTGACTATCATCTCGTAGT
Found at i:52240014 original size:25 final size:27
Alignment explanation
Indices: 52239977--52240029 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
52239967 TCAAACATGC
52239977 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
52240003 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
52240029 A
1 A
52240030 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:52241550 original size:26 final size:26
Alignment explanation
Indices: 52241520--52241601 Score: 146
Period size: 26 Copynumber: 3.2 Consensus size: 26
52241510 TGAAATGCCC
52241520 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
52241546 ATCATGGAACATTTACGTAACCTATT
1 ATCATGGAACATTTACCTAACCCATT
52241572 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
52241598 ATCA
1 ATCA
52241602 ATTTTTATCA
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.35, C:0.24, G:0.09, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:52249547 original size:26 final size:26
Alignment explanation
Indices: 52249517--52249598 Score: 146
Period size: 26 Copynumber: 3.2 Consensus size: 26
52249507 TGAAATGCCC
*
52249517 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
52249543 ATCATGGAACATTTACCTAACTCATT
1 ATCATGGAACATTTACCTAACCCATT
52249569 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
52249595 ATCA
1 ATCA
52249599 ATTTTTATCA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 53 1.00
ACGTcount: A:0.37, C:0.26, G:0.06, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:52256365 original size:16 final size:16
Alignment explanation
Indices: 52256344--52256402 Score: 75
Period size: 16 Copynumber: 3.7 Consensus size: 16
52256334 ATGTATCAAC
52256344 AAAAGCCGAAATGCAG
1 AAAAGCCGAAATGCAG
*
52256360 AAAAGCCGAAATGCCG
1 AAAAGCCGAAATGCAG
*
52256376 AAAAGCCAAAATGCCA-
1 AAAAGCCGAAATG-CAG
*
52256392 AAAAGTCGAAA
1 AAAAGCCGAAA
52256403 GTTTGGCTAC
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
16 36 0.97
17 1 0.03
ACGTcount: A:0.53, C:0.20, G:0.20, T:0.07
Consensus pattern (16 bp):
AAAAGCCGAAATGCAG
Found at i:52256370 original size:8 final size:8
Alignment explanation
Indices: 52256344--52256402 Score: 57
Period size: 8 Copynumber: 7.4 Consensus size: 8
52256334 ATGTATCAAC
52256344 AAAAGCCG
1 AAAAGCCG
* *
52256352 AAATGCAG
1 AAAAGCCG
52256360 AAAAGCCG
1 AAAAGCCG
*
52256368 AAATGCCG
1 AAAAGCCG
52256376 AAAAGCC-
1 AAAAGCCG
*
52256383 AAAATGCCA
1 AAAA-GCCG
*
52256392 AAAAGTCG
1 AAAAGCCG
52256400 AAA
1 AAA
52256403 GTTTGGCTAC
Statistics
Matches: 41, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
7 4 0.10
8 33 0.80
9 4 0.10
ACGTcount: A:0.53, C:0.20, G:0.20, T:0.07
Consensus pattern (8 bp):
AAAAGCCG
Found at i:52256671 original size:29 final size:29
Alignment explanation
Indices: 52256639--52256725 Score: 106
Period size: 29 Copynumber: 3.0 Consensus size: 29
52256629 GCCTAACGGA
52256639 CCATATAAATGTGATTTGGGCATAATGGG
1 CCATATAAATGTGATTTGGGCATAATGGG
* *
52256668 CCATATACAA-GTGATTTGGACCTAATGGG
1 CCATATA-AATGTGATTTGGGCATAATGGG
* * *
52256697 CCATATAAATATGA-TTGGGCTTAGTGGG
1 CCATATAAATGTGATTTGGGCATAATGGG
52256725 C
1 C
52256726 TAGATACGGG
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
28 14 0.28
29 34 0.68
30 2 0.04
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.30
Consensus pattern (29 bp):
CCATATAAATGTGATTTGGGCATAATGGG
Found at i:52268262 original size:23 final size:22
Alignment explanation
Indices: 52268219--52268262 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
52268209 AGCACAATAA
*
52268219 TGACTGATATATATGCTATATT
1 TGACTGATATATATGCAATATT
52268241 TGACTGA-ATATATTGGCAATAT
1 TGACTGATATATA-T-GCAATAT
52268263 GCATGGTGGA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 5 0.26
22 8 0.42
23 6 0.32
ACGTcount: A:0.34, C:0.09, G:0.16, T:0.41
Consensus pattern (22 bp):
TGACTGATATATATGCAATATT
Found at i:52277694 original size:28 final size:28
Alignment explanation
Indices: 52277662--52277719 Score: 107
Period size: 28 Copynumber: 2.1 Consensus size: 28
52277652 TTTGTCATGT
*
52277662 TATGTTTTTATTGAATTGCTAAATGGGA
1 TATGTTTTTATTGAATTGCTAAATGAGA
52277690 TATGTTTTTATTGAATTGCTAAATGAGA
1 TATGTTTTTATTGAATTGCTAAATGAGA
52277718 TA
1 TA
52277720 GTGAATGAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.31, C:0.03, G:0.19, T:0.47
Consensus pattern (28 bp):
TATGTTTTTATTGAATTGCTAAATGAGA
Found at i:52286650 original size:17 final size:19
Alignment explanation
Indices: 52286619--52286657 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 19
52286609 GTTCGGTTTT
52286619 TCTTTTGGTCATTTTTC-C
1 TCTTTTGGTCATTTTTCTC
52286637 TCTTTTGG-CATTTTTCTC
1 TCTTTTGGTCATTTTTCTC
52286655 TCT
1 TCT
52286658 GGCCGAATAC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 8 0.40
18 12 0.60
ACGTcount: A:0.05, C:0.23, G:0.10, T:0.62
Consensus pattern (19 bp):
TCTTTTGGTCATTTTTCTC
Found at i:52287759 original size:16 final size:18
Alignment explanation
Indices: 52287729--52287767 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
52287719 GTTCAGTTTT
52287729 TCTTTTGGTCAATTTTCC
1 TCTTTTGGTCAATTTTCC
*
52287747 TCTTTTGG-CATTTTTCTC
1 TCTTTTGGTCAATTTTC-C
52287765 TCT
1 TCT
52287768 GGCCGAATAC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 7 0.37
18 12 0.63
ACGTcount: A:0.08, C:0.23, G:0.10, T:0.59
Consensus pattern (18 bp):
TCTTTTGGTCAATTTTCC
Found at i:52289252 original size:26 final size:26
Alignment explanation
Indices: 52289216--52289286 Score: 81
Period size: 26 Copynumber: 2.7 Consensus size: 26
52289206 CATATACTAA
* * *
52289216 TACTGGTAGCTTTGCTGC-ATTATTGT
1 TACTGGCAGCTTTGCTGCGATGA-TAT
52289242 TACTGGCAGCTTTGCTGCGATGATAT
1 TACTGGCAGCTTTGCTGCGATGATAT
* *
52289268 TACTAGCAACTTTGCTGCG
1 TACTGGCAGCTTTGCTGCG
52289287 TTTTTGGTAT
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
26 36 0.92
27 3 0.08
ACGTcount: A:0.18, C:0.20, G:0.24, T:0.38
Consensus pattern (26 bp):
TACTGGCAGCTTTGCTGCGATGATAT
Found at i:52293341 original size:117 final size:119
Alignment explanation
Indices: 52293116--52293331 Score: 382
Period size: 117 Copynumber: 1.8 Consensus size: 119
52293106 ACAAAGCATG
* *
52293116 CGGGACTTTAAGCCCGGATATAATACCAGCACGAATGCCTTCGGGACTTAGCCCGGTTATAACAC
1 CGGGACTTTAAGCCCGGATATAATACCAGCACGAATGCCTTCAGGACTTAGCCCGGATATAACAC
52293181 CAGCACGAATGCCTTCGGGACTTAGCCCGGATATAGCACCAGCATGAATGCCTT
66 CAGCACGAATGCCTTCGGGACTTAGCCCGGATATAGCACCAGCATGAATGCCTT
**
52293235 CGGGAC-TT-AGCCCGGATATAATACCAGCACGAATGCCTTCAGGACTTAGCTTGGATATAACAC
1 CGGGACTTTAAGCCCGGATATAATACCAGCACGAATGCCTTCAGGACTTAGCCCGGATATAACAC
52293298 CAGCACGAATGCCTTCGGGACTTAGCCCGGATAT
66 CAGCACGAATGCCTTCGGGACTTAGCCCGGATAT
52293332 TTTTCCAGCA
Statistics
Matches: 93, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
117 85 0.91
118 2 0.02
119 6 0.06
ACGTcount: A:0.27, C:0.28, G:0.24, T:0.21
Consensus pattern (119 bp):
CGGGACTTTAAGCCCGGATATAATACCAGCACGAATGCCTTCAGGACTTAGCCCGGATATAACAC
CAGCACGAATGCCTTCGGGACTTAGCCCGGATATAGCACCAGCATGAATGCCTT
Found at i:52293342 original size:39 final size:39
Alignment explanation
Indices: 52293116--52293331 Score: 342
Period size: 39 Copynumber: 5.5 Consensus size: 39
52293106 ACAAAGCATG
*
52293116 CGGGACTTTAAGCCCGGATATAATACCAGCACGAATGCCTT
1 CGGGAC-TT-AGCCCGGATATAACACCAGCACGAATGCCTT
*
52293157 CGGGACTTAGCCCGGTTATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
* *
52293196 CGGGACTTAGCCCGGATATAGCACCAGCATGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
*
52293235 CGGGACTTAGCCCGGATATAATACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
* **
52293274 CAGGACTTAGCTTGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
52293313 CGGGACTTAGCCCGGATAT
1 CGGGACTTAGCCCGGATAT
52293332 TTTTCCAGCA
Statistics
Matches: 160, Mismatches: 15, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
39 152 0.95
40 2 0.01
41 6 0.04
ACGTcount: A:0.27, C:0.28, G:0.24, T:0.21
Consensus pattern (39 bp):
CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
Found at i:52293367 original size:39 final size:39
Alignment explanation
Indices: 52293324--52293455 Score: 176
Period size: 39 Copynumber: 3.4 Consensus size: 39
52293314 GGGACTTAGC
* * ** *
52293324 CCGGATATTTTTCCAGCACT-TAGCCTGCAAACTTTAAGT
1 CCGGATATATTTCCAGCA-TAAAGCCTGCGGACTTCAAGT
52293363 CCGGATATATTTCCAGCATAAAGCCTGCGGACTTCAAGT
1 CCGGATATATTTCCAGCATAAAGCCTGCGGACTTCAAGT
**
52293402 CCGGATATATTTCCAGCATAAAGCCTATGGACTTCAAGT
1 CCGGATATATTTCCAGCATAAAGCCTGCGGACTTCAAGT
*
52293441 CCGGATATTTTTCCA
1 CCGGATATATTTCCA
52293456 ATACCATGCA
Statistics
Matches: 84, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
38 1 0.01
39 83 0.99
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.30
Consensus pattern (39 bp):
CCGGATATATTTCCAGCATAAAGCCTGCGGACTTCAAGT
Found at i:52297334 original size:16 final size:18
Alignment explanation
Indices: 52297309--52297343 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
52297299 CGGTTTTTCT
52297309 TTTGGTCATTTTTC-CTC
1 TTTGGTCATTTTTCTCTC
52297326 TTTGG-CATTTTTCTCTC
1 TTTGGTCATTTTTCTCTC
52297343 T
1 T
52297344 GGCCGAATAC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.47
17 9 0.53
ACGTcount: A:0.06, C:0.23, G:0.11, T:0.60
Consensus pattern (18 bp):
TTTGGTCATTTTTCTCTC
Found at i:52297341 original size:15 final size:15
Alignment explanation
Indices: 52297302--52297346 Score: 56
Period size: 15 Copynumber: 2.9 Consensus size: 15
52297292 CCTTGTTCGG
52297302 TTTTTCT-TTTGGTCA
1 TTTTTCTCTTTGG-CA
52297317 TTTTTCCTCTTTGGCA
1 TTTTT-CTCTTTGGCA
*
52297333 TTTTTCTCTCTGGC
1 TTTTTCTCTTTGGC
52297347 CGAATACACT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
15 13 0.48
16 9 0.33
17 5 0.19
ACGTcount: A:0.04, C:0.22, G:0.13, T:0.60
Consensus pattern (15 bp):
TTTTTCTCTTTGGCA
Found at i:52298579 original size:27 final size:27
Alignment explanation
Indices: 52298549--52298602 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
52298539 ATGACCAAAA
*
52298549 TACCCCTATAGGGTAAAATGACT-ATTT
1 TACCCCTAGAGGGT-AAATGACTGATTT
*
52298576 TACCCCTCGAGGGTAAATGACTGATTT
1 TACCCCTAGAGGGTAAATGACTGATTT
52298603 GTGCTATGAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 8 0.33
27 16 0.67
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.31
Consensus pattern (27 bp):
TACCCCTAGAGGGTAAATGACTGATTT
Found at i:52304176 original size:27 final size:27
Alignment explanation
Indices: 52304123--52304176 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
52304113 ATAACCAAAA
* *
52304123 TACCCCTATAGGGTAAAATGACTATTT
1 TACCCCTAGAGGGTAAAATGACGATTT
*
52304150 TACCCCTCGAGGGT-AAATGACCGATTT
1 TACCCCTAGAGGGTAAAATGA-CGATTT
52304177 GTGCTATGAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 6 0.26
27 17 0.74
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.30
Consensus pattern (27 bp):
TACCCCTAGAGGGTAAAATGACGATTT
Found at i:52313355 original size:40 final size:40
Alignment explanation
Indices: 52313272--52313492 Score: 241
Period size: 40 Copynumber: 5.5 Consensus size: 40
52313262 ACCCAAGTAT
** * *
52313272 CTTCGGGAT-TTAG-CCGGATATAACCACTCGCAC-AAGGC
1 CTTCGGG-TCTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
52313310 CTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
52313350 CTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* * * * *
52313390 CTTCGGGTTTTGGCTCGGATATAGTAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* * * *
52313430 CTCCGGATCTTAGTCCGGATATAGTCACTTAGCACAAAAGC
1 CTTCGGGTCTTAGCCCGGATATAGTCAC-TAGCACAAATGC
*
52313471 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGTCTTAGCCCGGATAT
52313493 CATTCGAATA
Statistics
Matches: 149, Mismatches: 30, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
37 1 0.01
38 11 0.07
39 15 0.10
40 94 0.63
41 28 0.19
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.25
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:52321411 original size:40 final size:40
Alignment explanation
Indices: 52321328--52321548 Score: 250
Period size: 40 Copynumber: 5.5 Consensus size: 40
52321318 ACCCAAGTAT
** * *
52321328 CTTCGGGAT-TTAG-CCGGATATAACCACTCGCAC-AAGGC
1 CTTCGGG-TCTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
52321366 CTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
52321406 CTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* * * * *
52321446 CTTCGGGTTTTGGCCCGGATATAGTAACTCGCACAAAGGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
52321486 CTTCGGATCTTAGTCCGGATATAGTCACTTAGCACAAAAGC
1 CTTCGGGTCTTAGCCCGGATATAGTCAC-TAGCACAAATGC
*
52321527 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGTCTTAGCCCGGATAT
52321549 CATTCGAATA
Statistics
Matches: 152, Mismatches: 27, Indels: 5
0.83 0.15 0.03
Matches are distributed among these distances:
37 1 0.01
38 11 0.07
39 15 0.10
40 96 0.63
41 29 0.19
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.25
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:52328185 original size:45 final size:45
Alignment explanation
Indices: 52328121--52328242 Score: 156
Period size: 45 Copynumber: 2.7 Consensus size: 45
52328111 GTTGAAATAT
*
52328121 GAGTAAGACCATAGCTGAAAGACGCTATGGAATCACGATTCAAAC
1 GAGTAAGACCATAGCTGAAAGATGCTATGGAATCACGATTCAAAC
* *
52328166 GAGTAAGACCATAGCTGAAAAATGCTAT-GACATCATGATTCAAAC
1 GAGTAAGACCATAGCTGAAAGATGCTATGGA-ATCACGATTCAAAC
* * ** *
52328211 GTGGAAGACCATATTTGAAAGATACTATGGAA
1 GAGTAAGACCATAGCTGAAAGATGCTATGGAA
52328243 ACAAGACGGA
Statistics
Matches: 66, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
44 2 0.03
45 62 0.94
46 2 0.03
ACGTcount: A:0.41, C:0.16, G:0.21, T:0.21
Consensus pattern (45 bp):
GAGTAAGACCATAGCTGAAAGATGCTATGGAATCACGATTCAAAC
Found at i:52328275 original size:46 final size:46
Alignment explanation
Indices: 52328215--52328421 Score: 159
Period size: 45 Copynumber: 4.5 Consensus size: 46
52328205 TCAAACGTGG
* * *
52328215 AAGACCATATTTGAAAGATACTATGGAAACAAGACGGAAAATGAAT
1 AAGACCATAGTTGAAAGATACTATGGAAACATGACGGAAAATAAAT
* * ** * *
52328261 AGGACCATAGTTGAAAGATGCTAT-GATAGTAGGATGGAAAATAAAT
1 AAGACCATAGTTGAAAGATACTATGGA-AACATGACGGAAAATAAAT
* * * * * * *
52328307 AAAAACATAATTGAAAGACACTATGGGAACATGAC-AAAAATGAAT
1 AAGACCATAGTTGAAAGATACTATGGAAACATGACGGAAAATAAAT
** * * **
52328352 ATCACCATAGTTGAAAGACACTATGGCATTATGACGG-AAATAAAT
1 AAGACCATAGTTGAAAGATACTATGGAAACATGACGGAAAATAAAT
* * *
52328397 AAGATCATGGTTGAAAGATGCTATG
1 AAGACCATAGTTGAAAGATACTATG
52328422 AAATTCTTTG
Statistics
Matches: 122, Mismatches: 36, Indels: 7
0.74 0.22 0.04
Matches are distributed among these distances:
45 64 0.52
46 57 0.47
47 1 0.01
ACGTcount: A:0.46, C:0.11, G:0.21, T:0.22
Consensus pattern (46 bp):
AAGACCATAGTTGAAAGATACTATGGAAACATGACGGAAAATAAAT
Found at i:52328391 original size:91 final size:91
Alignment explanation
Indices: 52328220--52328398 Score: 216
Period size: 91 Copynumber: 2.0 Consensus size: 91
52328210 CGTGGAAGAC
* * * * **
52328220 CATATTTGAAAGATACTATGGAAACAAGACGGAAAATGAATAGGACCATAGTTGAAAGATGCTAT
1 CATAATTGAAAGACACTATGGAAACAAGACGAAAAATGAATAGCACCATAGTTGAAAGACACTAT
* *
52328285 GATAGTAGGATGGAAAATAAATAAAAA
66 GACAGTAGGACGG-AAATAAATAAAAA
* * *
52328312 CATAATTGAAAGACACTATGGGAACATGAC-AAAAATGAATATCACCATAGTTGAAAGACACTAT
1 CATAATTGAAAGACACTATGGAAACAAGACGAAAAATGAATAGCACCATAGTTGAAAGACACTAT
* * *
52328376 GGCATTATGACGGAAATAAATAA
66 GACAGTAGGACGGAAATAAATAA
52328399 GATCATGGTT
Statistics
Matches: 73, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
90 10 0.14
91 37 0.51
92 26 0.36
ACGTcount: A:0.48, C:0.11, G:0.20, T:0.22
Consensus pattern (91 bp):
CATAATTGAAAGACACTATGGAAACAAGACGAAAAATGAATAGCACCATAGTTGAAAGACACTAT
GACAGTAGGACGGAAATAAATAAAAA
Found at i:52330132 original size:27 final size:28
Alignment explanation
Indices: 52330102--52330199 Score: 119
Period size: 27 Copynumber: 3.5 Consensus size: 28
52330092 ATATTAAGTC
*
52330102 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
52330129 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
52330157 CACACACTTAGTGCTGA-ACAATTTAAACC
1 CGCACACTTAGTGCT-ATATAA-TCAAACT
52330186 CGCACACTTAGTGC
1 CGCACACTTAGTGC
52330200 CGAGATCAAC
Statistics
Matches: 62, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
27 22 0.35
28 21 0.34
29 19 0.31
ACGTcount: A:0.34, C:0.29, G:0.12, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:52338107 original size:27 final size:28
Alignment explanation
Indices: 52338077--52338173 Score: 119
Period size: 27 Copynumber: 3.5 Consensus size: 28
52338067 ATATTAAGTC
*
52338077 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
52338104 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * *
52338132 CGCACA-TTAGTGCTGA-ACAATTTAAACC
1 CGCACACTTAGTGCT-ATATAA-TCAAACT
52338160 CGCACACTTAGTGC
1 CGCACACTTAGTGC
52338174 CAATCTCATG
Statistics
Matches: 62, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
27 33 0.53
28 22 0.35
29 7 0.11
ACGTcount: A:0.33, C:0.28, G:0.13, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:52340006 original size:21 final size:21
Alignment explanation
Indices: 52339977--52340017 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
52339967 GGGCTCACAT
*
52339977 GCCCATGTGACCCTGGGACAC
1 GCCCATGTGACCCTAGGACAC
*
52339998 GCCCGTGTGACCCTAGGACA
1 GCCCATGTGACCCTAGGACA
52340018 TGTCCATGCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.37, G:0.29, T:0.15
Consensus pattern (21 bp):
GCCCATGTGACCCTAGGACAC
Found at i:52342352 original size:17 final size:17
Alignment explanation
Indices: 52342323--52342356 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
52342313 GACCTTAAGT
52342323 TTTGAGTTCCATAGCTA
1 TTTGAGTTCCATAGCTA
52342340 TTTGA-TTCTCATAGCTA
1 TTTGAGTTC-CATAGCTA
52342357 CTAGAATTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 3 0.19
17 13 0.81
ACGTcount: A:0.24, C:0.18, G:0.15, T:0.44
Consensus pattern (17 bp):
TTTGAGTTCCATAGCTA
Found at i:52361396 original size:38 final size:39
Alignment explanation
Indices: 52361321--52361560 Score: 312
Period size: 38 Copynumber: 6.2 Consensus size: 39
52361311 GGACTAAGAT
*
52361321 CCGAAGGCA-TTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTAC-ATATCCGGGCTAAGTC
52361360 CCGAAGGCATTTGTGCTAGTTAC-TATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACATATCCGGGCTAAGTC
52361398 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGT-
1 CCGAAGGCATTTGTGCTAGTTAC-ATATCCGGGCTAAGTC
**
52361437 CCGAAGGCATTTGTGCTAGTGGCTATATCCGGGCTAAGT-
1 CCGAAGGCATTTGTGCTAGTTAC-ATATCCGGGCTAAGTC
* * *
52361476 -CGAAGGCATTTGTGCTAGTGATTATATCCGGGCTACGTC
1 CCGAAGGCATTTGTGCTAGTTA-CATATCCGGGCTAAGTC
* * *
52361515 CCGAAGGCATTTGTGCGAGTTGCTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCTAGTTAC-ATATCCGGGCTAAGTC
52361554 CCGAAGG
1 CCGAAGG
52361561 TACTTGGGTT
Statistics
Matches: 182, Mismatches: 12, Indels: 14
0.88 0.06 0.07
Matches are distributed among these distances:
38 72 0.40
39 60 0.33
40 50 0.27
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (39 bp):
CCGAAGGCATTTGTGCTAGTTACATATCCGGGCTAAGTC
Found at i:52361447 original size:77 final size:78
Alignment explanation
Indices: 52361321--52361560 Score: 339
Period size: 77 Copynumber: 3.1 Consensus size: 78
52361311 GGACTAAGAT
52361321 CCGAAGGCA-TTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTA
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTA
52361385 TCCGGGCTAAGTC
66 TCCGGGCTAAGTC
*
52361398 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGT-CCGAAGGCATTTGTGCTAGTGGCTA
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGT---TA
52361462 -TATCCGGGCTAAGT-
63 CTATCCGGGCTAAGTC
* * * *
52361476 -CGAAGGCATTTGTGCTAGTGATTATATCCGGGCTACGTCCCGAAGGCATTTGTGCGAGTTGCTA
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTAC--
*
52361540 TATCC-GGCTAAATC
64 TATCCGGGCTAAGTC
52361554 CCGAAGG
1 CCGAAGG
52361561 TACTTGGGTT
Statistics
Matches: 146, Mismatches: 7, Indels: 18
0.85 0.04 0.11
Matches are distributed among these distances:
75 1 0.01
77 71 0.49
78 52 0.36
79 20 0.14
80 2 0.01
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (78 bp):
CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTA
TCCGGGCTAAGTC
Found at i:52361520 original size:117 final size:115
Alignment explanation
Indices: 52361309--52361560 Score: 366
Period size: 117 Copynumber: 2.2 Consensus size: 115
52361299 CGGATGATAA
*
52361309 CCGGACTAAGATCCGAAGGCATTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAG-TCCGAAGGCATTGTGCTAGTGACTATATCCGGGCTAAGT-CCGAAGGCATTTGT
*
52361374 GCTAGTTACTATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAT
64 GCTAGTTACTATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
52361426 CCGGGCTAAGTCCGAAGGCATTTGTGCTAGTGGCTATATCCGGGCTAAGT-CGAAGGCATTTGTG
1 CCGGGCTAAGTCCGAAGGCA-TTGTGCTAGTGACTATATCCGGGCTAAGTCCGAAGGCATTTGTG
* *
52361490 CTAGTGATTA-TATCCGGGCTACGTCCCGAAGGCATTTGTGCGAGTTGCTATAT
65 CTA--G-TTACTATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
52361543 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGT-CCGAAGG
52361561 TACTTGGGTT
Statistics
Matches: 124, Mismatches: 6, Indels: 10
0.89 0.04 0.07
Matches are distributed among these distances:
115 17 0.14
116 17 0.14
117 87 0.70
118 3 0.02
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (115 bp):
CCGGGCTAAGTCCGAAGGCATTGTGCTAGTGACTATATCCGGGCTAAGTCCGAAGGCATTTGTGC
TAGTTACTATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:52368567 original size:40 final size:40
Alignment explanation
Indices: 52368521--52368764 Score: 366
Period size: 40 Copynumber: 6.1 Consensus size: 40
52368511 ACTAAGATCA
* *
52368521 GAAGGCATTTGTGCTAATGACTATATCTGGGCTAAGTCCC
1 GAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCC
* *
52368561 GAAGGCATTTGTGCTAGTTACTATATCTGGGCTAAGTCCC
1 GAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCC
* *
52368601 GAAGGCATTTGTGCTAGTTACTATATCCGAGCTAAGTCCC
1 GAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCC
* *
52368641 GAAGGCATTTGTGGTAGTGGCTATATCCGGGCTAAGTCCC
1 GAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCC
*
52368681 GAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTCCC
1 GAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCC
* *
52368721 GAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATCCC
1 GAAGGCATTTGTGCTAG-TGACTATATCCGGGCTAAGTCCC
52368760 GAAGG
1 GAAGG
52368765 TACTTGGGTT
Statistics
Matches: 189, Mismatches: 14, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
39 15 0.08
40 172 0.91
41 2 0.01
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.29
Consensus pattern (40 bp):
GAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCC
Found at i:52372641 original size:53 final size:54
Alignment explanation
Indices: 52372557--52372762 Score: 207
Period size: 53 Copynumber: 3.8 Consensus size: 54
52372547 TCTTTTTTAG
* * *
52372557 ACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-AA
1 ACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAAA
* * * * * **
52372610 ACTCACCATTGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATCGTA
1 ACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-AAA
** * * * * * * *
52372665 GTTTATCAATGCCATGTCTTGACATGCTCCTACATGATTTCCTTGCCTTGTAAA
1 ACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAAA
* *
52372719 ACTTACCAATGCCATGCCTTGGCATGGTCTTACTTGGTATCCTT
1 ACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTT
52372763 AAACCCTAAT
Statistics
Matches: 118, Mismatches: 33, Indels: 3
0.77 0.21 0.02
Matches are distributed among these distances:
53 45 0.38
54 35 0.30
55 38 0.32
ACGTcount: A:0.20, C:0.26, G:0.17, T:0.37
Consensus pattern (54 bp):
ACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAAA
Found at i:52379115 original size:46 final size:46
Alignment explanation
Indices: 52378951--52379121 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
52378941 GGTTGAGCAT
*
52378951 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG-
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * * *
52378996 TCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC
52379041 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
*
52379089 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
52379122 GGGGCGGGAT
Statistics
Matches: 106, Mismatches: 10, Indels: 19
0.79 0.07 0.14
Matches are distributed among these distances:
41 2 0.02
42 4 0.04
44 3 0.03
45 27 0.25
46 32 0.30
47 27 0.25
48 4 0.04
50 4 0.04
51 3 0.03
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:52386672 original size:46 final size:46
Alignment explanation
Indices: 52386457--52386674 Score: 253
Period size: 46 Copynumber: 4.7 Consensus size: 46
52386447 GGTTGAGCAT
* *
52386457 CCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCAAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGC
* * *
52386503 CCAAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCAAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGC
* * * * *
52386549 CCAAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ATGC
* * *
52386594 ATCCGAACTCGTTGAGTTGAGCCCGATTTCACTTATGGATGCGAATGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGC
*
52386642 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
52386675 GGGGCGGGTT
Statistics
Matches: 147, Mismatches: 18, Indels: 14
0.82 0.10 0.08
Matches are distributed among these distances:
43 6 0.04
45 3 0.02
46 103 0.70
47 25 0.17
48 5 0.03
50 5 0.03
ACGTcount: A:0.23, C:0.22, G:0.26, T:0.28
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGC
Found at i:52400391 original size:15 final size:15
Alignment explanation
Indices: 52400371--52400435 Score: 73
Period size: 15 Copynumber: 4.4 Consensus size: 15
52400361 GTATCTTGGG
52400371 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
52400386 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGA
52400401 TTT-TTCTA-TCTTGGA
1 TTTCTT-TATTC-TGGA
*
52400416 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
52400430 TTTCTT
1 TTTCTT
52400436 GTTATCTTTA
Statistics
Matches: 43, Mismatches: 3, Indels: 9
0.78 0.05 0.16
Matches are distributed among these distances:
14 12 0.28
15 27 0.63
16 4 0.09
ACGTcount: A:0.09, C:0.14, G:0.14, T:0.63
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:52400401 original size:30 final size:31
Alignment explanation
Indices: 52400367--52400435 Score: 92
Period size: 30 Copynumber: 2.3 Consensus size: 31
52400357 TATCGTATCT
52400367 TGGGTTTCTT-TAT-TCTGGATTTCTTTATTC
1 TGGGTTTCTTCTATCT-TGGATTTCTTTATTC
52400397 TGGGTTT-TTCTATCTTGGATTTCTTTATTC
1 TGGGTTTCTTCTATCTTGGATTTCTTTATTC
*
52400427 -GGTTTTCTT
1 TGGGTTTCTT
52400436 GTTATCTTTA
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
29 7 0.20
30 27 0.77
31 1 0.03
ACGTcount: A:0.09, C:0.13, G:0.17, T:0.61
Consensus pattern (31 bp):
TGGGTTTCTTCTATCTTGGATTTCTTTATTC
Found at i:52402639 original size:49 final size:48
Alignment explanation
Indices: 52402566--52402659 Score: 152
Period size: 49 Copynumber: 1.9 Consensus size: 48
52402556 TCTATTGTGA
*
52402566 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACT-CGCGTACCGGATAATT
* *
52402615 GGTCGCATGTGTAGTACTATGTGCAGGCTACTTGCGTACCGGATA
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTCGCGTACCGGATA
52402660 GCTTTAGCTA
Statistics
Matches: 42, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
48 11 0.26
49 31 0.74
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.29
Consensus pattern (48 bp):
GGTCGCATGTGTAGTACTAAGTGCAGGCTACTCGCGTACCGGATAATT
Found at i:52408959 original size:46 final size:44
Alignment explanation
Indices: 52408816--52408959 Score: 107
Period size: 46 Copynumber: 3.1 Consensus size: 44
52408806 CACGCCCATA
* *
52408816 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGT-TACAACT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA-TAT-C--CT
* * * *
52408863 -CTCGAACTCAGACTCAACTCAACGAGTTCGGACATTCGC--ATCCAT
1 AGT-GAACTCGGACTCAACTCAACGAGTTCGG--ATGCCCATATCC-T
52408908 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCC--ATATCCT
52408955 AGTGA
1 AGTGA
52408960 TATGTCACTT
Statistics
Matches: 76, Mismatches: 10, Indels: 23
0.70 0.09 0.21
Matches are distributed among these distances:
44 5 0.07
45 1 0.01
46 34 0.45
47 29 0.38
48 4 0.05
49 3 0.04
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATATCCT
Found at i:52412848 original size:23 final size:23
Alignment explanation
Indices: 52412820--52412867 Score: 87
Period size: 23 Copynumber: 2.1 Consensus size: 23
52412810 CTTCACACCC
*
52412820 TTTTTCTCACAATACTCATAGCT
1 TTTTTCTCACAATACTCAGAGCT
52412843 TTTTTCTCACAATACTCAGAGCT
1 TTTTTCTCACAATACTCAGAGCT
52412866 TT
1 TT
52412868 CATTGAAGAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.06, T:0.44
Consensus pattern (23 bp):
TTTTTCTCACAATACTCAGAGCT
Found at i:52415298 original size:10 final size:10
Alignment explanation
Indices: 52415279--52415324 Score: 51
Period size: 10 Copynumber: 4.6 Consensus size: 10
52415269 TTCTCAACTC
52415279 ATCA-ACCAA
1 ATCATACCAA
52415288 ATCATACCAA
1 ATCATACCAA
52415298 ATC-TAACCAAA
1 ATCAT-ACC-AA
52415309 ATCATACCAA
1 ATCATACCAA
*
52415319 AACATA
1 ATCATA
52415325 TGTTCCATAA
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
9 5 0.16
10 18 0.56
11 8 0.25
12 1 0.03
ACGTcount: A:0.54, C:0.28, G:0.00, T:0.17
Consensus pattern (10 bp):
ATCATACCAA
Found at i:52416804 original size:20 final size:17
Alignment explanation
Indices: 52416769--52416811 Score: 50
Period size: 20 Copynumber: 2.4 Consensus size: 17
52416759 CATTGTAACG
52416769 ATCACAAAAACGTAAAA
1 ATCACAAAAACGTAAAA
52416786 ATCATCAAAAACCGATAAAA
1 ATCA-CAAAAA-CG-TAAAA
*
52416806 AACACA
1 ATCACA
52416812 TACCTAATTG
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 4 0.18
18 6 0.27
19 4 0.18
20 8 0.36
ACGTcount: A:0.63, C:0.21, G:0.05, T:0.12
Consensus pattern (17 bp):
ATCACAAAAACGTAAAA
Found at i:52420098 original size:39 final size:39
Alignment explanation
Indices: 52420055--52420152 Score: 151
Period size: 39 Copynumber: 2.5 Consensus size: 39
52420045 CCTAAAGACT
*
52420055 GGATATAATTCTCGCATATAGCTTGCGGACATGAAGTCC
1 GGATATAATTCTCGCATATAGCCTGCGGACATGAAGTCC
* * *
52420094 GGATATAATTCTCGCTTATAGCCTGTGGACCTGAAGTCC
1 GGATATAATTCTCGCATATAGCCTGCGGACATGAAGTCC
*
52420133 GGATATAATTCTCGCGTATA
1 GGATATAATTCTCGCATATA
52420153 TATATTCACA
Statistics
Matches: 54, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 54 1.00
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.31
Consensus pattern (39 bp):
GGATATAATTCTCGCATATAGCCTGCGGACATGAAGTCC
Found at i:52426904 original size:43 final size:43
Alignment explanation
Indices: 52426820--52426969 Score: 144
Period size: 43 Copynumber: 3.5 Consensus size: 43
52426810 TCTGTGACAT
* * * * *
52426820 CGTGTAAGACTATGTCTGGGAAATAGGCCTCGAT-TGAGATTTA
1 CGTGTAAGACCATGTCTGGGACAGAGGCATCGATAT-TGATTTA
* * **
52426863 CGTATAAGACCATGTCTAGGACATCGGCATCG-TATCTGATTT-
1 CGTGTAAGACCATGTCTGGGACAGAGGCATCGATAT-TGATTTA
* *
52426905 CGTGTAAGACCCTGTCTGGGACAGAGGCATCGATATTGAATTA
1 CGTGTAAGACCATGTCTGGGACAGAGGCATCGATATTGATTTA
* *
52426948 CATGTAAGACCACGTCTGGGAC
1 CGTGTAAGACCATGTCTGGGAC
52426970 TTCGACATTG
Statistics
Matches: 87, Mismatches: 17, Indels: 6
0.79 0.15 0.05
Matches are distributed among these distances:
42 33 0.38
43 54 0.62
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.27
Consensus pattern (43 bp):
CGTGTAAGACCATGTCTGGGACAGAGGCATCGATATTGATTTA
Found at i:52426988 original size:85 final size:85
Alignment explanation
Indices: 52426819--52426977 Score: 187
Period size: 85 Copynumber: 1.9 Consensus size: 85
52426809 GTCTGTGACA
* * * * *
52426819 TCGTGTAAGACTATGTCTGGGAAATAGGCCTCGATTGAGATTTACGTATAAGACCATGTCTAGGA
1 TCGTGTAAGACCATGTCTGGGAAAGAGGCATCGATTGAGATTTACATATAAGACCACGTCTAGGA
*
52426884 CATCGGCATCGTATCTGATT
66 CATCGACATCGTATCTGATT
* * * *
52426904 TCGTGTAAGACCCTGTCTGGGACAGAGGCATCGATATTGA-A-TTACATGTAAGACCACGTCTGG
1 TCGTGTAAGACCATGTCTGGGAAAGAGGCATCG--ATTGAGATTTACATATAAGACCACGTCTAG
*
52426967 GACTTCGACAT
64 GACATCGACAT
52426978 TGTACTTGAT
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
85 55 0.90
86 1 0.02
87 5 0.08
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.28
Consensus pattern (85 bp):
TCGTGTAAGACCATGTCTGGGAAAGAGGCATCGATTGAGATTTACATATAAGACCACGTCTAGGA
CATCGACATCGTATCTGATT
Found at i:52434209 original size:43 final size:44
Alignment explanation
Indices: 52434162--52434283 Score: 130
Period size: 43 Copynumber: 2.9 Consensus size: 44
52434152 ACTGTCTCTG
* *
52434162 GGACATAGGCCTCG-ATTGAGATTTACATATAAGACCATGTCTA
1 GGACATAGGCATCGTATTGAGATTTACATGTAAGACCATGTCTA
* * *
52434205 GGACATTGGCATCGTATCT--GATTT-CATGTAAGACCCTGTCTG
1 GGACATAGGCATCGTAT-TGAGATTTACATGTAAGACCATGTCTA
*
52434247 GGACAGAGGCATCGATATTGA-A-TTACATGTAAGACCA
1 GGACATAGGCATCG-TATTGAGATTTACATGTAAGACCA
52434284 CGTTTGGGAC
Statistics
Matches: 65, Mismatches: 8, Indels: 12
0.76 0.09 0.14
Matches are distributed among these distances:
42 30 0.46
43 32 0.49
44 2 0.03
45 1 0.02
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (44 bp):
GGACATAGGCATCGTATTGAGATTTACATGTAAGACCATGTCTA
Found at i:52434245 original size:42 final size:42
Alignment explanation
Indices: 52434181--52434283 Score: 118
Period size: 42 Copynumber: 2.4 Consensus size: 42
52434171 CCTCGATTGA
* **
52434181 GATTTACATATAAGACCATGTCTAGGACATTGGCATCG-TATCT
1 GATTT-CATGTAAGACCATGTCTAGGACAGAGGCATCGATAT-T
* *
52434224 GATTTCATGTAAGACCCTGTCTGGGACAGAGGCATCGATATT
1 GATTTCATGTAAGACCATGTCTAGGACAGAGGCATCGATATT
*
52434266 GAATTACATGTAAGACCA
1 G-ATTTCATGTAAGACCA
52434284 CGTTTGGGAC
Statistics
Matches: 51, Mismatches: 7, Indels: 4
0.82 0.11 0.06
Matches are distributed among these distances:
42 29 0.57
43 22 0.43
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.29
Consensus pattern (42 bp):
GATTTCATGTAAGACCATGTCTAGGACAGAGGCATCGATATT
Found at i:52434301 original size:43 final size:42
Alignment explanation
Indices: 52434184--52434301 Score: 107
Period size: 42 Copynumber: 2.8 Consensus size: 42
52434174 CGATTGAGAT
* * * * *
52434184 TTACATATAAGACCATGTCTAGGACATTGGCATCGTATCTGA
1 TTACATGTAAGACCACGTCTGGGACGTAGGCATCGTATCTGA
*
52434226 TTTCATGTAAGACC-CTGTCTGGGACAG-AGGCATCGATAT-TGAA
1 TTACATGTAAGACCAC-GTCTGGGAC-GTAGGCATCG-TATCTG-A
* *
52434269 TTACATGTAAGACCACGTTTGGGACGTCGGCAT
1 TTACATGTAAGACCACGTCTGGGACGTAGGCAT
52434302 TGTACTTGAT
Statistics
Matches: 61, Mismatches: 9, Indels: 11
0.75 0.11 0.14
Matches are distributed among these distances:
42 30 0.49
43 30 0.49
44 1 0.02
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (42 bp):
TTACATGTAAGACCACGTCTGGGACGTAGGCATCGTATCTGA
Found at i:52437898 original size:42 final size:43
Alignment explanation
Indices: 52437783--52437902 Score: 136
Period size: 43 Copynumber: 2.8 Consensus size: 43
52437773 AGAATTATCG
* * * *
52437783 TTATGTGATTACGTGCAAGACCATGTCTGGGATATTGGCATCA
1 TTATGTGATAACATGTAAGACCATATCTGGGATATTGGCATCA
* ** * *
52437826 TTATTTGATTTCATGTAAGACCATAGCTGGGCTATTGGCATCGA
1 TTATGTGATAACATGTAAGACCATATCTGGGATATTGGCATC-A
52437870 -TATGTGA-AACATGTAAGACCATATCTGGGATAT
1 TTATGTGATAACATGTAAGACCATATCTGGGATAT
52437903 GACATTGTAC
Statistics
Matches: 64, Mismatches: 12, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
42 22 0.34
43 41 0.64
44 1 0.02
ACGTcount: A:0.28, C:0.15, G:0.23, T:0.33
Consensus pattern (43 bp):
TTATGTGATAACATGTAAGACCATATCTGGGATATTGGCATCA
Found at i:52438729 original size:43 final size:43
Alignment explanation
Indices: 52438668--52438768 Score: 123
Period size: 43 Copynumber: 2.3 Consensus size: 43
52438658 ACGGGCAGAG
* * * * *
52438668 ACACGAGCATGTGTCTCAGCCGTGTGCAACACATGGTCATGCT
1 ACACGGGCGTGTGTCTCAGCCATGTCCAACACACGGTCATGCT
* *
52438711 ACACGGGCGTGTGTCTCAGTCATGTCCGACACACGGTCATGCT
1 ACACGGGCGTGTGTCTCAGCCATGTCCAACACACGGTCATGCT
52438754 ACAC-GGCTGTGTGTC
1 ACACGGGC-GTGTGTC
52438769 CCCTGGTGTT
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
42 3 0.06
43 47 0.94
ACGTcount: A:0.20, C:0.29, G:0.28, T:0.24
Consensus pattern (43 bp):
ACACGGGCGTGTGTCTCAGCCATGTCCAACACACGGTCATGCT
Found at i:52440278 original size:13 final size:13
Alignment explanation
Indices: 52440262--52440294 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
52440252 TTTGATTAAA
*
52440262 TTAGTTAATTAGT
1 TTAGATAATTAGT
52440275 TTAGATAATTAGT
1 TTAGATAATTAGT
52440288 TTA-ATAA
1 TTAGATAA
52440295 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:52445608 original size:6 final size:6
Alignment explanation
Indices: 52445597--52445643 Score: 58
Period size: 6 Copynumber: 7.8 Consensus size: 6
52445587 TCTTATCTTT
* * * *
52445597 TTTTTA TTTTTA TTTCTA TTTTGA TTTTGA TTTTTA TGTTTA TTTTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTT
52445644 TGTTATAAAG
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
6 35 1.00
ACGTcount: A:0.15, C:0.02, G:0.06, T:0.77
Consensus pattern (6 bp):
TTTTTA
Found at i:52445618 original size:12 final size:11
Alignment explanation
Indices: 52445589--52445643 Score: 58
Period size: 12 Copynumber: 4.7 Consensus size: 11
52445579 TTAAATCCTC
52445589 TTATCTTTT-TT
1 TTAT-TTTTATT
52445600 TTATTTTTATT
1 TTATTTTTATT
*
52445611 TCTATTTTGATT
1 T-TATTTTTATT
52445623 TTGATTTTTATGT
1 TT-ATTTTTAT-T
52445636 TTATTTTT
1 TTATTTTT
52445644 TGTTATAAAG
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
10 4 0.11
11 8 0.21
12 23 0.61
13 3 0.08
ACGTcount: A:0.15, C:0.04, G:0.05, T:0.76
Consensus pattern (11 bp):
TTATTTTTATT
Found at i:52448743 original size:40 final size:40
Alignment explanation
Indices: 52448650--52448866 Score: 264
Period size: 40 Copynumber: 5.5 Consensus size: 40
52448640 AAGCCAAGTA
* * *
52448650 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
52448688 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
52448728 CCTTCGGGACTTAGCCCGGATATAGTAGA-TCGTACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTA-ACTCGCACAAATG
* * *
52448768 CCTTCGGGACTTAGCCCAGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
52448808 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
52448848 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
52448867 TTATCATCCG
Statistics
Matches: 156, Mismatches: 17, Indels: 10
0.85 0.09 0.05
Matches are distributed among these distances:
38 12 0.08
39 18 0.12
40 125 0.80
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:52452666 original size:18 final size:18
Alignment explanation
Indices: 52452624--52452666 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
52452614 CCATGTTCAG
52452624 TTTT-TCTTTTGGTCATT
1 TTTTCTCTTTTGGTCATT
*
52452641 TTTCCTCTTTTGG-CATTT
1 TTTTCTCTTTTGGTCA-TT
52452659 TTTTCTCT
1 TTTTCTCT
52452667 GGCGGAATAC
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
17 5 0.23
18 17 0.77
ACGTcount: A:0.05, C:0.19, G:0.09, T:0.67
Consensus pattern (18 bp):
TTTTCTCTTTTGGTCATT
Found at i:52468099 original size:97 final size:99
Alignment explanation
Indices: 52467933--52468125 Score: 354
Period size: 97 Copynumber: 2.0 Consensus size: 99
52467923 AATCTTTTAA
52467933 TTTTCTGTTTCGTTTCAGATCTAATTGTTTAGGGTTTTCGCAGGAGTTTCTCGTGACTTGGCAAC
1 TTTTCTGTTTCGTTTCAGATCTAATTGTTTAGGGTTTTCGCAGGAGTTTCTCGTGACTTGGCAAC
52467998 TCGATCTTGGT-C-CGCGCAACCCCGTATCATTT
66 TCGATCTTGGTCCGCGCGCAACCCCGTATCATTT
* *
52468030 TTTTCTGTTTCGTTTCAGGTCTAATTGTTTAGGGTTTTCGTAGGAGTTTCTCGTGACTTGGCAAC
1 TTTTCTGTTTCGTTTCAGATCTAATTGTTTAGGGTTTTCGCAGGAGTTTCTCGTGACTTGGCAAC
52468095 TCGATCTTGGTCCGCGCGCAACCCCGTATCA
66 TCGATCTTGGTCCGCGCGCAACCCCGTATCA
52468126 ACTTCTTTGA
Statistics
Matches: 92, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
97 74 0.80
98 1 0.01
99 17 0.18
ACGTcount: A:0.15, C:0.23, G:0.23, T:0.39
Consensus pattern (99 bp):
TTTTCTGTTTCGTTTCAGATCTAATTGTTTAGGGTTTTCGCAGGAGTTTCTCGTGACTTGGCAAC
TCGATCTTGGTCCGCGCGCAACCCCGTATCATTT
Found at i:52468379 original size:47 final size:47
Alignment explanation
Indices: 52468309--52469026 Score: 1148
Period size: 47 Copynumber: 15.3 Consensus size: 47
52468299 CCCTTCGGGA
* * *
52468309 CTTATCACATTTATACGCTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * * * *
52468356 CTTATCACATATATACACCTTCACATCCATCACATCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
52468403 CTTATCTCATATATATACTTTCACATTCATCATATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
52468450 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
52468497 CTTGTCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
52468544 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * * *
52468591 CTTATCACATATGTACACTTTCACATTCATCATATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
52468638 CTTGTCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
52468685 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
52468732 CTTGTCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
52468779 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
52468826 CTTGTCACATATATACACTTTCACATTCATCATATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
52468873 CTTGTCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
52468920 CTTATCTCATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
52468967 CTTGTCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
52469014 CTTATCACATATA
1 CTTATCACATATA
52469027 CATATCTTGT
Statistics
Matches: 614, Mismatches: 57, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 614 1.00
ACGTcount: A:0.27, C:0.29, G:0.09, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:52468671 original size:25 final size:25
Alignment explanation
Indices: 52468642--52468719 Score: 74
Period size: 25 Copynumber: 3.2 Consensus size: 25
52468632 TTAGGCCTTG
52468642 TCACATATATACACTTTCACATTCA
1 TCACATATATACACTTTCACATTCA
** * * *
52468667 TCACAT-T-GGC-CATTCGGCCTT-A
1 TCACATATATACACTTTC-ACATTCA
52468689 TCACATATATACACTTTCACATTCA
1 TCACATATATACACTTTCACATTCA
52468714 TCACAT
1 TCACAT
52468720 CGGCCATTAG
Statistics
Matches: 38, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 11 0.29
23 5 0.13
24 5 0.13
25 17 0.45
ACGTcount: A:0.31, C:0.29, G:0.05, T:0.35
Consensus pattern (25 bp):
TCACATATATACACTTTCACATTCA
Found at i:52477100 original size:20 final size:21
Alignment explanation
Indices: 52477061--52477100 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
52477051 CTCCAGCAAA
*
52477061 CTTGAGATCCAAATTAAGCTG
1 CTTGAGAGCCAAATTAAGCTG
*
52477082 CTTGAGAGCCTAA-TAAGCT
1 CTTGAGAGCCAAATTAAGCT
52477101 TTATGTTCTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.28
Consensus pattern (21 bp):
CTTGAGAGCCAAATTAAGCTG
Found at i:52481581 original size:46 final size:46
Alignment explanation
Indices: 52481514--52481682 Score: 182
Period size: 46 Copynumber: 3.7 Consensus size: 46
52481504 TGTAACCCGC
** *
52481514 CCATAAGTGAACTCAAACTCAACTCAACGAGCTCAGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGACGTTCGCAT
* * * *
52481560 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGATGTCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGACGT-TCG---CAT
* * * *
52481610 -C-TCA-CGAACTCGGACTCAACTTAACGAGTTCAGACGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGACGTTCGCAT
52481653 CCATAAGTGAACTCGGACTCAACTCAACGA
1 CCATAAGTGAACTCGGACTCAACTCAACGA
52481683 ATTCGGATGC
Statistics
Matches: 98, Mismatches: 18, Indels: 14
0.75 0.14 0.11
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 57 0.58
47 29 0.30
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.31, C:0.28, G:0.18, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGACGTTCGCAT
Found at i:52484459 original size:30 final size:29
Alignment explanation
Indices: 52484417--52484473 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 29
52484407 AAAGATAACA
52484417 AGAAAACCGAATAAAGAAATCCAAGATTG
1 AGAAAACCGAATAAAGAAATCCAAGATTG
*
52484446 AGAAACCCAGAATAAAGAAATCCAAGAT
1 AGAAAACC-GAATAAAGAAATCCAAGAT
52484474 ACGATACTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
29 7 0.27
30 19 0.73
ACGTcount: A:0.56, C:0.16, G:0.16, T:0.12
Consensus pattern (29 bp):
AGAAAACCGAATAAAGAAATCCAAGATTG
Found at i:52487568 original size:46 final size:46
Alignment explanation
Indices: 52487396--52487562 Score: 178
Period size: 46 Copynumber: 3.6 Consensus size: 46
52487386 TGTAACCCGC
* *
52487396 CCATAAGTGAACTCGAACTCAACTCAACGAGCTCAGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGACGTTCGCAT
* * * * *
52487442 CCATAAGTGAACTCGGACTCGACTCAATGAGCTCGGATGTCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGACGT-TCG---CAT
* * *
52487492 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCAGACGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGACGTTCGCAT
*
52487535 CCATAAGTGAACTTGGACTCAACTCAAC
1 CCATAAGTGAACTCGGACTCAACTCAAC
52487563 AAGTTCGGAT
Statistics
Matches: 96, Mismatches: 18, Indels: 14
0.75 0.14 0.11
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 55 0.57
47 29 0.30
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGACGTTCGCAT
Found at i:52487571 original size:93 final size:93
Alignment explanation
Indices: 52487404--52487573 Score: 268
Period size: 93 Copynumber: 1.8 Consensus size: 93
52487394 GCCCATAAGT
* *
52487404 GAACTCGAACTCAACTCAACGAGCTCAGGCGTTCGCATCCATAAGTGAACTCGGACTCGACTCAA
1 GAACTCGAACTCAACTCAACGAGCTCAGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
**
52487469 TGAGCTCGGATGTCTAGTTACATCTCAC
66 CAAGCTCGGATGTCTAGTTACATCTCAC
* * *
52487497 GAACTCGGACTCAACTCAACGAGTTCAGACGTTCGCATCCATAAGTGAACTTGGACTCAACTCAA
1 GAACTCGAACTCAACTCAACGAGCTCAGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
52487562 CAAGTTCGGATG
66 CAAGCTCGGATG
52487574 CCTAAATATC
Statistics
Matches: 69, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGAACTCAACTCAACGAGCTCAGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CAAGCTCGGATGTCTAGTTACATCTCAC
Found at i:52489035 original size:55 final size:56
Alignment explanation
Indices: 52488869--52489085 Score: 346
Period size: 56 Copynumber: 3.9 Consensus size: 56
52488859 ACATGTAATT
* * * *
52488869 ACATATCAATGCCAATGTACTAGACGTGGTCTTACTCGCACACATATATCAGAATC
1 ACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACACATATATCAGAATC
52488925 ACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACACATATATCAGAATC
1 ACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACACATATATCAGAATC
* *
52488981 ACATATCGATGCCAACGTATTAAA-GTGGTCTTACTCACACACATATATCGGAATC
1 ACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACACATATATCAGAATC
* * *
52489036 ACATATTGATGCCAACGTATTAAACGTGGTCTTAATCCCACACATATATC
1 ACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACACATATATC
52489086 GATGCCATGG
Statistics
Matches: 151, Mismatches: 9, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
55 52 0.34
56 99 0.66
ACGTcount: A:0.34, C:0.24, G:0.14, T:0.28
Consensus pattern (56 bp):
ACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACACATATATCAGAATC
Found at i:52495024 original size:45 final size:45
Alignment explanation
Indices: 52494960--52495133 Score: 172
Period size: 45 Copynumber: 3.8 Consensus size: 45
52494950 TGTAACCCGC
* * *
52494960 CCATAAGCGAACTCGGACTCAACTCAACCAGCTCGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGCAT
*
52495005 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG-ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGC-A--T
* *** **
52495051 ACATCTCTCGAACTCGGACTCAACTCAACGAATTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGG-CATTCGCAT
* * *
52495098 CCATAAGTGAAGTCGGACTCAACTCAATGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
52495134 ATGCTCAACC
Statistics
Matches: 104, Mismatches: 18, Indels: 13
0.77 0.13 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 34 0.33
46 30 0.29
47 31 0.30
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGCAT
Found at i:52495134 original size:93 final size:92
Alignment explanation
Indices: 52494967--52495137 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 92
52494957 CGCCCATAAG
* *
52494967 CGAACTCGGACTCAACTCAACCAGCTCGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 CGAACTCGGACTCAACTCAACCAACTCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
52495032 CGAGCTCGGATGCCTAGTTACATCTCT
66 CGAGCTCGGATGCCTAGTTACATCTCT
* * *
52495059 CGAACTCGGACTCAACTCAACGAATTCGGACATTCGCATCCATAAGTGAAGTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACCAACTCGG-CATTCGCATCCATAAGTGAACTCGGACTCAACTCA
* *
52495124 ATGAGTTCGGATGC
65 ACGAGCTCGGATGC
52495138 TCAACCATCC
Statistics
Matches: 71, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
92 26 0.37
93 45 0.63
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.22
Consensus pattern (92 bp):
CGAACTCGGACTCAACTCAACCAACTCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCT
Found at i:52495595 original size:30 final size:30
Alignment explanation
Indices: 52495561--52495617 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
52495551 AAAATCATAT
52495561 TTTTGAAAAATTACAATTTTGCCCCTAAAC
1 TTTTGAAAAATTACAATTTTGCCCCTAAAC
* * * *
52495591 TTTTGCATATTTACACTTTTGCCCCTA
1 TTTTGAAAAATTACAATTTTGCCCCTA
52495618 GGCTCGAGAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.28, C:0.23, G:0.07, T:0.42
Consensus pattern (30 bp):
TTTTGAAAAATTACAATTTTGCCCCTAAAC
Found at i:52504820 original size:26 final size:26
Alignment explanation
Indices: 52504784--52504834 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
52504774 TGTTGAAAGT
52504784 ATGTAAGTTGGTATGATAATAATAGC
1 ATGTAAGTTGGTATGATAATAATAGC
52504810 ATGTAAGTTGGTATGATAATAATAG
1 ATGTAAGTTGGTATGATAATAATAG
52504835 AGCAATAATG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.39, C:0.02, G:0.24, T:0.35
Consensus pattern (26 bp):
ATGTAAGTTGGTATGATAATAATAGC
Found at i:52508919 original size:22 final size:25
Alignment explanation
Indices: 52508894--52508948 Score: 62
Period size: 27 Copynumber: 2.2 Consensus size: 25
52508884 ATAACCATTC
52508894 TTTTCC-TCA-AAAT-TAACTTAAG
1 TTTTCCTTCATAAATGTAACTTAAG
*
52508916 TTTTCATCTTTATAAATGTAACTTAAG
1 TTTTC--CTTCATAAATGTAACTTAAG
52508943 TTTTCC
1 TTTTCC
52508949 ATAACTTAAG
Statistics
Matches: 27, Mismatches: 1, Indels: 7
0.77 0.03 0.20
Matches are distributed among these distances:
22 5 0.19
24 1 0.04
25 3 0.11
26 4 0.15
27 14 0.52
ACGTcount: A:0.31, C:0.16, G:0.05, T:0.47
Consensus pattern (25 bp):
TTTTCCTTCATAAATGTAACTTAAG
Found at i:52509982 original size:27 final size:27
Alignment explanation
Indices: 52509948--52510014 Score: 100
Period size: 27 Copynumber: 2.5 Consensus size: 27
52509938 AAATGACAGC
52509948 TTTGCCCTTATGTGGTAAGATGACTAT
1 TTTGCCCTTATGTGGTAAGATGACTAT
* * *
52509975 TTTTCCCTTATATGGTAAGATGACTGT
1 TTTGCCCTTATGTGGTAAGATGACTAT
52510002 TTTGCCC-TATGTG
1 TTTGCCCTTATGTG
52510015 ATGTATATAT
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
26 5 0.14
27 30 0.86
ACGTcount: A:0.19, C:0.16, G:0.21, T:0.43
Consensus pattern (27 bp):
TTTGCCCTTATGTGGTAAGATGACTAT
Found at i:52513259 original size:17 final size:17
Alignment explanation
Indices: 52513237--52513272 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
52513227 ACAAATCAAT
52513237 TTTCTCATTATATAGAA
1 TTTCTCATTATATAGAA
52513254 TTTCTCATTATATAGAA
1 TTTCTCATTATATAGAA
52513271 TT
1 TT
52513273 CAAAATATGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.33, C:0.11, G:0.06, T:0.50
Consensus pattern (17 bp):
TTTCTCATTATATAGAA
Found at i:52514146 original size:39 final size:39
Alignment explanation
Indices: 52514102--52514235 Score: 162
Period size: 39 Copynumber: 3.4 Consensus size: 39
52514092 ATTATATTAT
52514102 CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTC
1 CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTC
* **
52514141 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTTC
1 CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTC
* ** * * *
52514180 CAGCACGAAGCCTGC-GGACCCTAAGTCCGGATATAATTC
1 CAGCACAAAGCCTGCGGGACTTTAA-CCCGGATACATTTC
*
52514219 CAGCACATAGCCTGCGG
1 CAGCACAAAGCCTGCGG
52514236 ACCCTAAGTC
Statistics
Matches: 81, Mismatches: 12, Indels: 3
0.84 0.12 0.03
Matches are distributed among these distances:
38 5 0.06
39 75 0.93
40 1 0.01
ACGTcount: A:0.25, C:0.31, G:0.25, T:0.19
Consensus pattern (39 bp):
CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTC
Found at i:52514236 original size:39 final size:39
Alignment explanation
Indices: 52514102--52514253 Score: 157
Period size: 39 Copynumber: 3.9 Consensus size: 39
52514092 ATTATATTAT
* ** * *
52514102 CAGCACAAAGCCTGCGGGACTTTAA-CCCGGATACATTTC
1 CAGCACGAAGCCTGC-GGACCCTAAGTCCGGATACAATTC
* ** * *
52514141 CAGCACGAAGCCTGCGGGA-CTTTGGCCCGGATACATTTC
1 CAGCACGAAGCCTGC-GGACCCTAAGTCCGGATACAATTC
*
52514180 CAGCACGAAGCCTGCGGACCCTAAGTCCGGATATAATTC
1 CAGCACGAAGCCTGCGGACCCTAAGTCCGGATACAATTC
52514219 CAGCAC-ATAGCCTGCGGACCCTAAGTCCGGATACA
1 CAGCACGA-AGCCTGCGGACCCTAAGTCCGGATACA
52514254 CATCAAATAT
Statistics
Matches: 99, Mismatches: 11, Indels: 6
0.85 0.09 0.05
Matches are distributed among these distances:
38 6 0.06
39 93 0.94
ACGTcount: A:0.26, C:0.32, G:0.24, T:0.18
Consensus pattern (39 bp):
CAGCACGAAGCCTGCGGACCCTAAGTCCGGATACAATTC
Found at i:52517743 original size:4 final size:4
Alignment explanation
Indices: 52517734--52517768 Score: 70
Period size: 4 Copynumber: 8.8 Consensus size: 4
52517724 TAGTTCCGTT
52517734 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTT
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTT
52517769 TTTTTTTACT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 31 1.00
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (4 bp):
TTTC
Found at i:52519676 original size:17 final size:17
Alignment explanation
Indices: 52519654--52519689 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
52519644 ACAAATCAAT
52519654 TTTCTCATTATATAGAA
1 TTTCTCATTATATAGAA
52519671 TTTCTCATTATATAGAA
1 TTTCTCATTATATAGAA
52519688 TT
1 TT
52519690 CGAAATATGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.33, C:0.11, G:0.06, T:0.50
Consensus pattern (17 bp):
TTTCTCATTATATAGAA
Found at i:52520562 original size:39 final size:39
Alignment explanation
Indices: 52520519--52520652 Score: 232
Period size: 39 Copynumber: 3.4 Consensus size: 39
52520509 ATTATATTAT
* *
52520519 CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
52520558 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
52520597 CAGCACGAAGCTTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
52520636 CAGCACGAAGCCTGCGG
1 CAGCACGAAGCCTGCGG
52520653 ACCCTAAGTC
Statistics
Matches: 89, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 89 1.00
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (39 bp):
CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
Found at i:52520668 original size:39 final size:39
Alignment explanation
Indices: 52520519--52520709 Score: 192
Period size: 39 Copynumber: 4.9 Consensus size: 39
52520509 ATTATATTAT
* *
52520519 CAGCACAAAGCCTGCGGGACTTTAA-CCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGAC-CTAAGCCCGGATACATTTC
* **
52520558 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACCTAAGCCCGGATACATTTC
* * *
52520597 CAGCACGAAGCTTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACCTAAGCCCGGATACATTTC
* * * *
52520636 CAGCACGAAGCCTGC-GGACCCTAAGTCTGGATATAATTC
1 CAGCACGAAGCCTGCGGGA-CCTAAGCCCGGATACATTTC
**
52520675 CAGCAC-ATAGCCTGC-GGACCCTAAGTTCGGATACA
1 CAGCACGA-AGCCTGCGGGA-CCTAAGCCCGGATACA
52520710 CATCAAATAT
Statistics
Matches: 134, Mismatches: 15, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
38 6 0.04
39 128 0.96
ACGTcount: A:0.26, C:0.30, G:0.24, T:0.20
Consensus pattern (39 bp):
CAGCACGAAGCCTGCGGGACCTAAGCCCGGATACATTTC
Found at i:52520668 original size:78 final size:78
Alignment explanation
Indices: 52520519--52520691 Score: 231
Period size: 78 Copynumber: 2.2 Consensus size: 78
52520509 ATTATATTAT
* **
52520519 CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTGGC
1 CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTCCAGCACGAAGCCTGCGGGACCTAAGC
*
52520584 CCGGATACATTTC
66 CCGGATACAATTC
* * *
52520597 CAGCACGAAGCTTGCGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGC-GGACCCTAAG
1 CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTCCAGCACGAAGCCTGCGGGA-CCTAAG
* * *
52520661 TCTGGATATAATTC
65 CCCGGATACAATTC
*
52520675 CAGCACATAGCCTGCGG
1 CAGCACAAAGCCTGCGG
52520692 ACCCTAAGTT
Statistics
Matches: 81, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
77 3 0.04
78 78 0.96
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.20
Consensus pattern (78 bp):
CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTCCAGCACGAAGCCTGCGGGACCTAAGC
CCGGATACAATTC
Found at i:52522959 original size:46 final size:46
Alignment explanation
Indices: 52522906--52523078 Score: 183
Period size: 46 Copynumber: 3.7 Consensus size: 46
52522896 TGGTTGAGCA
52522906 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
52522952 TCTGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
52522997 CATCCGAACTCGTTGAGTTGAGTCCGGGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
52523045 CCCGAGCTCGTTGAGTTGAGTCCAAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
52523079 GGGGCGGGTT
Statistics
Matches: 102, Mismatches: 16, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 58 0.57
47 27 0.26
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:52523062 original size:93 final size:93
Alignment explanation
Indices: 52522903--52523073 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
52522893 GGATGGTTGA
* * *
52522903 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
52522968 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCAAGTTCGTGAAATGTAACTAG
* *
52522996 GCATCCGAACTCGTTGAGTTGAGTCCGGGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
52523061 TGAGTCCAAGTTC
66 TGAGTCCAAGTTC
52523074 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCAAGTTCGTGAAATGTAACTAG
Found at i:52530583 original size:27 final size:26
Alignment explanation
Indices: 52530552--52530729 Score: 169
Period size: 27 Copynumber: 6.6 Consensus size: 26
52530542 TAAATTGTAC
52530552 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * *
52530579 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* *
52530605 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
*
52530633 GGCACTAAGTGTGCGAGTCTGACTATGT
1 AGCACTAAGTGTGCGA-T-TGACTATGT
* *
52530661 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* * *
52530688 GGCACTAAGTGTGCGAGTTGAATATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
52530715 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
52530730 GGCTCAATAT
Statistics
Matches: 125, Mismatches: 21, Indels: 10
0.80 0.13 0.06
Matches are distributed among these distances:
26 1 0.01
27 99 0.79
28 25 0.20
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.28
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:52530668 original size:82 final size:81
Alignment explanation
Indices: 52530553--52530708 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
52530543 AAATTGTACA
* * *
52530553 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
52530617 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
52530634 GCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
52530699 TGCGAGTTGA
65 TGCGAATTGA
52530709 ATATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 18 0.27
82 48 0.73
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:52530720 original size:82 final size:81
Alignment explanation
Indices: 52530549--52530729 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
52530539 GATTAAATTG
* * *
52530549 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
*
52530614 GTGTGCGAATTGACCA
66 GTGTGCGAATTGAACA
* * ** *
52530630 TGCGGCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACT
1 TACAGCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* *
52530694 AAGTGTGCGAGTTGAATA
64 AAGTGTGCGAATTGAACA
* *
52530712 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
52530730 GGCTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 20 0.24
82 63 0.76
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGAACA
Found at i:52530738 original size:27 final size:27
Alignment explanation
Indices: 52530634--52530740 Score: 79
Period size: 27 Copynumber: 3.9 Consensus size: 27
52530624 TGACCATGCG
* * *
52530634 GCACTAAGTGTGCGAGTCTGACTATGTA
1 GCACTAAGTGTGCGAG-CTCAATATATA
** * * ** *
52530662 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
52530689 GCACTAAGTGTGCGAGTTGAATATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
52530716 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
52530741 CATTCGTGAA
Statistics
Matches: 65, Mismatches: 14, Indels: 1
0.81 0.17 0.01
Matches are distributed among these distances:
27 50 0.77
28 15 0.23
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:52534933 original size:30 final size:30
Alignment explanation
Indices: 52534899--52534959 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
52534889 TCCTTAACTC
*
52534899 AAACTTTGGTAAAATTACAATTTTGCCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCCT
* * * *
52534929 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCCT
52534959 A
1 A
52534960 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.39
Consensus pattern (30 bp):
AAACTTTGGCAAAATTACAATTTTGCCCCT
Found at i:52538433 original size:56 final size:56
Alignment explanation
Indices: 52538340--52538561 Score: 221
Period size: 56 Copynumber: 4.0 Consensus size: 56
52538330 TCTTACATGT
* * * * * **
52538340 AATCACATACCGATGCCAACGTACTAGACATGGTCTTACTCGTGCACATATATCAA
1 AATCACATATCAATGCCAAAGTATTAAACATGGTCTTACTCGCACACATATATCAA
* * *
52538396 AATCACATATCAATTCCAAAGTATTAAACGTGGTCTTACTCGCACACATATATCAG
1 AATCACATATCAATGCCAAAGTATTAAACATGGTCTTACTCGCACACATATATCAA
* * * * *
52538452 AATCACATATCGATGCCAACGTATTAAACATGATCTTACTCGCACACATATATTAG
1 AATCACATATCAATGCCAAAGTATTAAACATGGTCTTACTCGCACACATATATCAA
* * ** * * **
52538508 GATCGCATATTGATGCCAACA-TATTAAAAATCGTCTTACTTTCACACATATATC
1 AATCACATATCAATGCCAA-AGTATTAAACATGGTCTTACTCGCACACATATATC
52538562 GATGCCATGG
Statistics
Matches: 139, Mismatches: 26, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
56 139 1.00
ACGTcount: A:0.36, C:0.24, G:0.11, T:0.29
Consensus pattern (56 bp):
AATCACATATCAATGCCAAAGTATTAAACATGGTCTTACTCGCACACATATATCAA
Found at i:52538544 original size:112 final size:112
Alignment explanation
Indices: 52538340--52538561 Score: 266
Period size: 112 Copynumber: 2.0 Consensus size: 112
52538330 TCTTACATGT
* * **
52538340 AATCACATACCGATGCCAACGTACTAGACATGGTCTTACTCGTGCACATATATCAAAATCACATA
1 AATCACATACCGATGCCAACGTACTAAACATGATCTTACTCGCACACATATATCAAAATCACATA
* ** *
52538405 TCAATTCCAAAGTATTAAACGTGGTCTTACTCGCACACATATATCAG
66 TCAATGCCAAAGTATTAAAAATCGTCTTACTCGCACACATATATCAG
* * * ** *
52538452 AATCACATATCGATGCCAACGTATTAAACATGATCTTACTCGCACACATATATTAGGATCGCATA
1 AATCACATACCGATGCCAACGTACTAAACATGATCTTACTCGCACACATATATCAAAATCACATA
** **
52538517 TTGATGCCAACA-TATTAAAAATCGTCTTACTTTCACACATATATC
66 TCAATGCCAA-AGTATTAAAAATCGTCTTACTCGCACACATATATC
52538562 GATGCCATGG
Statistics
Matches: 91, Mismatches: 18, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
112 90 0.99
113 1 0.01
ACGTcount: A:0.36, C:0.24, G:0.11, T:0.29
Consensus pattern (112 bp):
AATCACATACCGATGCCAACGTACTAAACATGATCTTACTCGCACACATATATCAAAATCACATA
TCAATGCCAAAGTATTAAAAATCGTCTTACTCGCACACATATATCAG
Found at i:52542539 original size:39 final size:39
Alignment explanation
Indices: 52542370--52542522 Score: 252
Period size: 39 Copynumber: 3.9 Consensus size: 39
52542360 ATATAAATAC
* * *
52542370 GCGAGAATTATATTCGGACTTCAGGTCTGCAGGCTATAA
1 GCGAGAATTATATCCGGACTTCAGGTCCGCAGGCTATAT
*
52542409 GCGAGAATTATATCCGGACTTCAGGTCCGCTGGCTATAT
1 GCGAGAATTATATCCGGACTTCAGGTCCGCAGGCTATAT
*
52542448 GCGAGAATTATATCCGGACTTCATGTCCGCAGGCTATAT
1 GCGAGAATTATATCCGGACTTCAGGTCCGCAGGCTATAT
*
52542487 GCGAGAATTATATCCGGACTTTAGGTCCGCAGGCTA
1 GCGAGAATTATATCCGGACTTCAGGTCCGCAGGCTA
52542523 CGTGCTGGAC
Statistics
Matches: 106, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 106 1.00
ACGTcount: A:0.25, C:0.22, G:0.25, T:0.27
Consensus pattern (39 bp):
GCGAGAATTATATCCGGACTTCAGGTCCGCAGGCTATAT
Found at i:52546059 original size:17 final size:19
Alignment explanation
Indices: 52546037--52546073 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
52546027 CACATTGAAG
52546037 TGTTTT-ATCGAAAA-CCT
1 TGTTTTCATCGAAAATCCT
*
52546054 TGTTTTCATTGAAAATCCT
1 TGTTTTCATCGAAAATCCT
52546073 T
1 T
52546074 CTTTAAAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
17 6 0.35
18 7 0.41
19 4 0.24
ACGTcount: A:0.27, C:0.16, G:0.11, T:0.46
Consensus pattern (19 bp):
TGTTTTCATCGAAAATCCT
Found at i:52548283 original size:40 final size:41
Alignment explanation
Indices: 52548194--52548305 Score: 138
Period size: 40 Copynumber: 2.8 Consensus size: 41
52548184 TATAACCACA
* * * *
52548194 AGCACAATTGCCTTCGGGTCTTAACCCGGGT-ATAGCAACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAAGCAACT
* *
52548234 CGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAAGCAACT
* *
52548274 AGCATAAATGCCTTCGGGACTTAGCCCGGATA
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATA
52548306 TCATTCAAAT
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
40 59 0.95
41 3 0.05
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAAGCAACT
Found at i:52550857 original size:21 final size:22
Alignment explanation
Indices: 52550839--52550880 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
52550829 GAAAAATACT
52550839 ATAAGGAAT-AATATAAATATG
1 ATAAGGAATAAATATAAATATG
*
52550860 ATATGGAATAAAATATAAATA
1 ATAAGGAAT-AAATATAAATA
52550881 AAATATAATG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 8 0.44
23 10 0.56
ACGTcount: A:0.60, C:0.00, G:0.12, T:0.29
Consensus pattern (22 bp):
ATAAGGAATAAATATAAATATG
Found at i:52551030 original size:17 final size:17
Alignment explanation
Indices: 52551008--52551060 Score: 53
Period size: 16 Copynumber: 3.4 Consensus size: 17
52550998 ATAAAAAATA
52551008 AAAATAATATATATAAT
1 AAAATAATATATATAAT
52551025 AAAAT-ATATA-ATAA-
1 AAAATAATATATATAAT
*
52551039 AATATAAT-T-TATAAGT
1 AAAATAATATATATAA-T
52551055 AAAATA
1 AAAATA
52551061 TTGAATAATA
Statistics
Matches: 30, Mismatches: 2, Indels: 9
0.73 0.05 0.22
Matches are distributed among these distances:
14 9 0.30
15 6 0.20
16 10 0.33
17 5 0.17
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (17 bp):
AAAATAATATATATAAT
Found at i:52551031 original size:12 final size:12
Alignment explanation
Indices: 52550997--52551044 Score: 64
Period size: 12 Copynumber: 4.2 Consensus size: 12
52550987 ATACATAATT
52550997 TATAA-AAAATA
1 TATAATAAAATA
* *
52551008 -AAAATAATATA
1 TATAATAAAATA
52551019 TATAATAAAATA
1 TATAATAAAATA
52551031 TATAATAAAATA
1 TATAATAAAATA
52551043 TA
1 TA
52551045 ATTTATAAGT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
10 3 0.10
11 5 0.16
12 23 0.74
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (12 bp):
TATAATAAAATA
Found at i:52551038 original size:30 final size:31
Alignment explanation
Indices: 52551004--52551077 Score: 91
Period size: 30 Copynumber: 2.4 Consensus size: 31
52550994 ATTTATAAAA
52551004 AATAAAAATAATATATATAA-TAAAATA-T-AT
1 AATAAAAATAAT-T-TATAAGTAAAATATTAAT
52551034 AATAAAATATAATTTATAAGTAAAATATTGAAT
1 AATAAAA-ATAATTTATAAGTAAAATATT-AAT
52551067 AATAAAAATAA
1 AATAAAAATAA
52551078 CATGATGGAT
Statistics
Matches: 39, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
29 5 0.13
30 15 0.38
31 6 0.15
32 4 0.10
33 9 0.23
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (31 bp):
AATAAAAATAATTTATAAGTAAAATATTAAT
Found at i:52553491 original size:29 final size:28
Alignment explanation
Indices: 52553425--52553518 Score: 116
Period size: 28 Copynumber: 3.3 Consensus size: 28
52553415 AAGTCTATAT
* *
52553425 ACATGCATATGGCCCACTAGGCCCAATC
1 ACATTCATATGGCCCATTAGGCCCAATC
* * * *
52553453 TCTTTCATATGGCCCATTAAGCCTAAATC
1 ACATTCATATGGCCCATTAGGCC-CAATC
*
52553482 ACATTCATATGGCCCATTAGGCCCAATG
1 ACATTCATATGGCCCATTAGGCCCAATC
52553510 ACATTCATA
1 ACATTCATA
52553519 GTCATGCAAT
Statistics
Matches: 54, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 30 0.56
29 24 0.44
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.27
Consensus pattern (28 bp):
ACATTCATATGGCCCATTAGGCCCAATC
Found at i:52553760 original size:16 final size:16
Alignment explanation
Indices: 52553739--52553786 Score: 78
Period size: 16 Copynumber: 3.0 Consensus size: 16
52553729 AAACTTCTGA
52553739 CTTTTCGGCATTTCAG
1 CTTTTCGGCATTTCAG
* *
52553755 CTTTTCGGTATTTCGG
1 CTTTTCGGCATTTCAG
52553771 CTTTTCGGCATTTCAG
1 CTTTTCGGCATTTCAG
52553787 GATTTGCTGG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 28 1.00
ACGTcount: A:0.10, C:0.23, G:0.21, T:0.46
Consensus pattern (16 bp):
CTTTTCGGCATTTCAG
Found at i:52562569 original size:29 final size:31
Alignment explanation
Indices: 52562520--52562578 Score: 70
Period size: 29 Copynumber: 2.0 Consensus size: 31
52562510 AATGTTTATC
* *
52562520 TATTTATTTGATGGATGAAAT-T-GAGATAG
1 TATTTATTTAATAGATGAAATGTGGAGATAG
52562549 TATTTATTATAATAGAT-AAATGTGGAGATA
1 TATTTATT-TAATAGATGAAATGTGGAGATA
52562579 TTAAATTTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
29 12 0.48
30 7 0.28
31 6 0.24
ACGTcount: A:0.39, C:0.00, G:0.20, T:0.41
Consensus pattern (31 bp):
TATTTATTTAATAGATGAAATGTGGAGATAG
Found at i:52565516 original size:44 final size:43
Alignment explanation
Indices: 52565468--52565609 Score: 166
Period size: 44 Copynumber: 3.3 Consensus size: 43
52565458 TCGATAACGT
*
52565468 ACACTTAGTGCCATCGCATTAAACCGAAACTCATTCGGTATCGC
1 ACACTTAGTGCCATC-CATTAAACTGAAACTCATTCGGTATCGC
* * * *
52565512 ACACTTAGTGCCAT--A-TATAGCTGAAGCT-ATATCGATAACGC
1 ACACTTAGTGCCATCCATTA-AACTGAAACTCAT-TCGGTATCGC
*
52565553 ACACTTAGTGCCATCACATGAAACTGAAACTCATTCGGTATCGC
1 ACACTTAGTGCCATC-CATTAAACTGAAACTCATTCGGTATCGC
52565597 ACACTTAGTGCCA
1 ACACTTAGTGCCA
52565610 CATATAGCTG
Statistics
Matches: 81, Mismatches: 10, Indels: 14
0.77 0.10 0.13
Matches are distributed among these distances:
40 4 0.05
41 30 0.37
44 44 0.54
45 3 0.04
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (43 bp):
ACACTTAGTGCCATCCATTAAACTGAAACTCATTCGGTATCGC
Found at i:52565566 original size:85 final size:85
Alignment explanation
Indices: 52565420--52565626 Score: 317
Period size: 85 Copynumber: 2.4 Consensus size: 85
52565410 CTCAAAGAAC
* * *
52565420 TCGCACACTTAGTG-CATAAATGATTTGCTGAAGCTATATCGATAACGTACACTTAGTGCCATCG
1 TCGCACACTTAGTGCCAT--AT-A-TAGCTGAAGCTATATCGATAACGCACACTTAGTGCCATCA
*
52565484 CATTAAACCGAAACTCATTCGGTA
62 CATGAAACCGAAACTCATTCGGTA
52565508 TCGCACACTTAGTGCCATATATAGCTGAAGCTATATCGATAACGCACACTTAGTGCCATCACATG
1 TCGCACACTTAGTGCCATATATAGCTGAAGCTATATCGATAACGCACACTTAGTGCCATCACATG
*
52565573 AAACTGAAACTCATTCGGTA
66 AAACCGAAACTCATTCGGTA
*
52565593 TCGCACACTTAGTGCCACATATAGCTGAAGCTAT
1 TCGCACACTTAGTGCCATATATAGCTGAAGCTAT
52565627 TCTAATTCGC
Statistics
Matches: 112, Mismatches: 6, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
85 92 0.82
86 1 0.01
87 2 0.02
88 14 0.12
89 3 0.03
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.27
Consensus pattern (85 bp):
TCGCACACTTAGTGCCATATATAGCTGAAGCTATATCGATAACGCACACTTAGTGCCATCACATG
AAACCGAAACTCATTCGGTA
Found at i:52569922 original size:28 final size:26
Alignment explanation
Indices: 52569849--52569923 Score: 71
Period size: 28 Copynumber: 2.8 Consensus size: 26
52569839 CAGTAATGCA
**
52569849 GCAAAGCTGCTAATAACAGTAAACGTG
1 GCAAAGCCACTAAT-ACAGTAAACGTG
* *
52569876 GCAAAGCCACGAGA-GCAGTAATTACGTG
1 GCAAAGCCACTA-ATACAGTAA--ACGTG
52569904 GCAAAGCCACTAATACAGTA
1 GCAAAGCCACTAATACAGTA
52569924 CTTCCTCCAA
Statistics
Matches: 38, Mismatches: 6, Indels: 7
0.75 0.12 0.14
Matches are distributed among these distances:
26 6 0.16
27 10 0.26
28 22 0.58
ACGTcount: A:0.40, C:0.21, G:0.23, T:0.16
Consensus pattern (26 bp):
GCAAAGCCACTAATACAGTAAACGTG
Found at i:52579208 original size:27 final size:27
Alignment explanation
Indices: 52579148--52579214 Score: 73
Period size: 27 Copynumber: 2.4 Consensus size: 27
52579138 ATATATATAC
*
52579148 ATCACATAAGGGCAAAACAATCATCTT
1 ATCATATAAGGGCAAAACAATCATCTT
* * *
52579175 A-CAATATAAGGGCAAAATAGTCATTTT
1 ATC-ATATAAGGGCAAAACAATCATCTT
52579202 ATCATATATAGGG
1 ATCATATA-AGGG
52579215 GGTCTAGGTA
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
26 1 0.03
27 27 0.82
28 5 0.15
ACGTcount: A:0.43, C:0.15, G:0.15, T:0.27
Consensus pattern (27 bp):
ATCATATAAGGGCAAAACAATCATCTT
Found at i:52582465 original size:43 final size:41
Alignment explanation
Indices: 52582385--52582520 Score: 112
Period size: 43 Copynumber: 3.2 Consensus size: 41
52582375 CCCAGATATT
* * **
52582385 GTCTTACATGATATCAAATATCGATGTCAATAG-CCCAGCTATG
1 GTCTTACACGAAATCAAATAAAGATG-CAAT-GTCCCAGC-ATG
52582428 GTCTTACACGAAATCAAATAAAGATGCAAATGTCCCAGACATG
1 GTCTTACACGAAATCAAATAAAGATGC-AATGTCCCAG-CATG
* ** * * *
52582471 GTCTTACACGTAATCTCATAATGATGCCGATGTCCCATACATG
1 GTCTTACACGAAATCAAATAAAGATG-CAATGTCCCA-GCATG
52582514 GTCTTAC
1 GTCTTAC
52582521 TCATAATCAC
Statistics
Matches: 78, Mismatches: 10, Indels: 10
0.80 0.10 0.10
Matches are distributed among these distances:
42 2 0.03
43 74 0.95
44 2 0.03
ACGTcount: A:0.33, C:0.23, G:0.16, T:0.28
Consensus pattern (41 bp):
GTCTTACACGAAATCAAATAAAGATGCAATGTCCCAGCATG
Found at i:52587638 original size:14 final size:14
Alignment explanation
Indices: 52587606--52587649 Score: 52
Period size: 14 Copynumber: 3.0 Consensus size: 14
52587596 TCATAACTTA
52587606 TATTATATACATAT
1 TATTATATACATAT
* *
52587620 AATTATATACATTT
1 TATTATATACATAT
52587634 TATTATTATAACATAT
1 TATTA-TAT-ACATAT
52587650 GTATATTGTA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
14 16 0.67
15 3 0.12
16 5 0.21
ACGTcount: A:0.43, C:0.07, G:0.00, T:0.50
Consensus pattern (14 bp):
TATTATATACATAT
Found at i:52595367 original size:43 final size:43
Alignment explanation
Indices: 52595320--52595417 Score: 117
Period size: 43 Copynumber: 2.3 Consensus size: 43
52595310 ATAGCCCAGC
* *
52595320 TATGGTCTTACATGAAATCAAATAACGATGCCAATGTTCC-ATA
1 TATGGTCTTACACGAAATCAAATAACGATGCCAATG-TCCTAGA
* ** *
52595363 TATGGTCTTACACGTAATCTCATAATGATGCCAATGTCCTAGA
1 TATGGTCTTACACGAAATCAAATAACGATGCCAATGTCCTAGA
*
52595406 CATGGTCTTACA
1 TATGGTCTTACA
52595418 AATAATCACA
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
42 3 0.06
43 44 0.94
ACGTcount: A:0.33, C:0.20, G:0.15, T:0.32
Consensus pattern (43 bp):
TATGGTCTTACACGAAATCAAATAACGATGCCAATGTCCTAGA
Found at i:52600482 original size:55 final size:55
Alignment explanation
Indices: 52600293--52600547 Score: 255
Period size: 55 Copynumber: 4.8 Consensus size: 55
52600283 ACACGGGTAC
* * * *
52600293 CTTACCATTGCCATGACTTGTCATGGCCTTACATGGTATCC--T---TTT-GAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTTGCCTTTAGAAA
* *
52600342 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCC-TTGCCTTGT-G-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTTGCCTT-TAGAAA
* * * *
52600395 CTCACCAATGTCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTTGCCTT-TAGAAA
* * * *
52600450 CTTATCAATGTCATGTCTTGACATGGTCTTACATGATATCCTTT-CC-TTAGAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTTGCCTTTAGAAA
*
52600503 CCTTACCAATTGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 -CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTATCCTT
52600548 AAACCCTAAT
Statistics
Matches: 174, Mismatches: 21, Indels: 16
0.82 0.10 0.08
Matches are distributed among these distances:
49 38 0.22
50 1 0.01
52 2 0.01
53 50 0.29
54 11 0.06
55 67 0.39
56 5 0.03
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.36
Consensus pattern (55 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTTGCCTTTAGAAA
Found at i:52602259 original size:46 final size:44
Alignment explanation
Indices: 52602208--52602384 Score: 203
Period size: 46 Copynumber: 3.9 Consensus size: 44
52602198 ATGGTTGAGC
52602208 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
*** * *
52602252 ATGTCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GC
1 A--TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGA
*
52602301 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCG-A
* *
52602346 CACCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 -ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
52602385 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 12, Indels: 16
0.80 0.09 0.11
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 70 0.62
47 32 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (44 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
Found at i:52602365 original size:93 final size:93
Alignment explanation
Indices: 52602206--52602376 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
52602196 GGATGGTTGA
***
52602206 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAGT
52602271 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* *
52602299 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAGT
52602364 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
52602377 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:52604489 original size:68 final size:69
Alignment explanation
Indices: 52604379--52604516 Score: 269
Period size: 68 Copynumber: 2.0 Consensus size: 69
52604369 ATGAACGGAA
52604379 TAAATAGAAAGTAGTAGAGGTATGAATAAAGGTCATAATATTATGATACGAATGAAAATGTCCTT
1 TAAATAGAAAGTAGTAGAGGTATGAATAAAGGTCATAATATTATGATACGAATGAAAATGTCCTT
52604444 GTCT
66 GTCT
52604448 TAAATAGAAAGTAGTA-AGGTATGAATAAAGGTCATAATATTATGATACGAATGAAAATGTCCTT
1 TAAATAGAAAGTAGTAGAGGTATGAATAAAGGTCATAATATTATGATACGAATGAAAATGTCCTT
52604512 GTCT
66 GTCT
52604516 T
1 T
52604517 GATTGGACGT
Statistics
Matches: 69, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
68 53 0.77
69 16 0.23
ACGTcount: A:0.42, C:0.07, G:0.20, T:0.31
Consensus pattern (69 bp):
TAAATAGAAAGTAGTAGAGGTATGAATAAAGGTCATAATATTATGATACGAATGAAAATGTCCTT
GTCT
Found at i:52608072 original size:46 final size:45
Alignment explanation
Indices: 52608015--52608190 Score: 212
Period size: 46 Copynumber: 3.8 Consensus size: 45
52608005 AAGTGATGCA
52608015 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
52608061 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
52608108 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
52608154 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
52608191 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 69 0.62
47 32 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:52608171 original size:93 final size:93
Alignment explanation
Indices: 52608012--52608182 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
52608002 AGGAAGTGAT
* *
52608012 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
52608077 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* *
52608105 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
52608170 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
52608183 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:52611128 original size:15 final size:15
Alignment explanation
Indices: 52611091--52611133 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
52611081 CATAGTATCG
*
52611091 TATCTTGG-TTTCTT
1 TATCTTGGATTTCTC
52611105 TAT-TCTGGATTTCTC
1 TATCT-TGGATTTCTC
52611120 TATCTTGGATTTCT
1 TATCTTGGATTTCT
52611134 TTATTCTTTC
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
13 1 0.04
14 6 0.24
15 17 0.68
16 1 0.04
ACGTcount: A:0.12, C:0.16, G:0.14, T:0.58
Consensus pattern (15 bp):
TATCTTGGATTTCTC
Found at i:52613542 original size:46 final size:46
Alignment explanation
Indices: 52613475--52613650 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
52613465 AAGTTGAGCA
52613475 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
*
52613521 TCCGAACTCGTTGAGTTGAGTCCGAGTT--C-GA-GAGATGT-AACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGTGAA-T--G
* * *
52613566 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
* *
52613614 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
52613651 GCGGGTTACA
Statistics
Matches: 113, Mismatches: 6, Indels: 22
0.80 0.04 0.16
Matches are distributed among these distances:
42 3 0.03
43 7 0.06
44 1 0.01
45 1 0.01
46 64 0.57
47 27 0.24
48 1 0.01
49 1 0.01
50 5 0.04
51 3 0.03
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
Found at i:52613581 original size:93 final size:93
Alignment explanation
Indices: 52613472--52613642 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
52613462 AGGAAGTTGA
* * *
52613472 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
52613537 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* *
52613565 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
52613630 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
52613643 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:52616589 original size:15 final size:15
Alignment explanation
Indices: 52616569--52616624 Score: 87
Period size: 15 Copynumber: 3.7 Consensus size: 15
52616559 GTATCTTAGG
52616569 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
52616584 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
52616599 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
52616614 TTTCTTTATTC
1 TTTCTTTATTC
52616625 AGTTTCCTTG
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
14 2 0.05
15 33 0.89
16 2 0.05
ACGTcount: A:0.12, C:0.16, G:0.11, T:0.61
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:52618945 original size:46 final size:46
Alignment explanation
Indices: 52618895--52619070 Score: 193
Period size: 46 Copynumber: 3.8 Consensus size: 46
52618885 TGGTTGAGCA
52618895 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
*
52618941 TCCGAACTCGTTGAGTTGAGTCCGAGTT--C-GA-GAGATGT-AACTAG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGTGAA-T-G
* * * *
52618985 GCATCTAAGCTCGTTGAGTTGAG-CCTGAGTTCACTTATGGATGCGAACG
1 TC--CGAA-CTCGTTGAGTTGAGTCC-GAGTTCACTTATGGATGTGAATG
*
52619034 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
52619071 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 9, Indels: 26
0.76 0.06 0.18
Matches are distributed among these distances:
42 3 0.03
43 7 0.06
44 3 0.03
46 61 0.56
47 23 0.21
49 3 0.03
50 5 0.05
51 3 0.03
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
Found at i:52626764 original size:29 final size:31
Alignment explanation
Indices: 52626715--52626773 Score: 70
Period size: 29 Copynumber: 2.0 Consensus size: 31
52626705 AGGAAATAAC
* *
52626715 TATTTATTTGATGGATGAAAT-T-GAGATAG
1 TATTTATTTAATAGATGAAATATGGAGATAG
52626744 TATTTATTATAATAGAT-AAATATGGAGATA
1 TATTTATT-TAATAGATGAAATATGGAGATA
52626774 TTAAATTTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
29 12 0.48
30 7 0.28
31 6 0.24
ACGTcount: A:0.41, C:0.00, G:0.19, T:0.41
Consensus pattern (31 bp):
TATTTATTTAATAGATGAAATATGGAGATAG
Found at i:52633430 original size:17 final size:16
Alignment explanation
Indices: 52633418--52633454 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
52633408 ACATATCATT
52633418 TATTTCATTATATCAA
1 TATTTCATTATATCAA
52633434 TATTTCA-TATA-CAA
1 TATTTCATTATATCAA
52633448 TAGTTTC
1 TA-TTTC
52633455 CATATATTCC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
14 5 0.25
15 8 0.40
16 7 0.35
ACGTcount: A:0.35, C:0.14, G:0.03, T:0.49
Consensus pattern (16 bp):
TATTTCATTATATCAA
Found at i:52633454 original size:15 final size:15
Alignment explanation
Indices: 52633418--52633461 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 15
52633408 ACATATCATT
52633418 TATTTCATTATATCAA
1 TATTTCA-TATATCAA
52633434 TATTTCATATA-CAA
1 TATTTCATATATCAA
52633448 TAGTTTCCATATAT
1 TA-TTT-CATATAT
52633462 TCCACATATA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
14 5 0.20
15 7 0.28
16 13 0.52
ACGTcount: A:0.36, C:0.14, G:0.02, T:0.48
Consensus pattern (15 bp):
TATTTCATATATCAA
Done.