Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 176 of 362
Found at i:58154905 original size:22 final size:22
Alignment explanation
Indices: 58154880--58154922 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
58154870 GACTATGCAA
58154880 TCTGAGCTCATGAGT-TATGTGG
1 TCTGAGCTCATGA-TATATGTGG
58154902 TCTGAGCTCATGATATATGTG
1 TCTGAGCTCATGATATATGTG
58154923 ACACATGTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 1 0.05
22 19 0.95
ACGTcount: A:0.21, C:0.14, G:0.28, T:0.37
Consensus pattern (22 bp):
TCTGAGCTCATGATATATGTGG
Found at i:58157859 original size:8 final size:8
Alignment explanation
Indices: 58157846--58157883 Score: 58
Period size: 8 Copynumber: 4.8 Consensus size: 8
58157836 GCAAAAGCTA
58157846 AAATGCCG
1 AAATGCCG
58157854 AAATGCCG
1 AAATGCCG
* *
58157862 AAATACTG
1 AAATGCCG
58157870 AAATGCCG
1 AAATGCCG
58157878 AAATGC
1 AAATGC
58157884 AGAGATGCCA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
8 26 1.00
ACGTcount: A:0.42, C:0.21, G:0.21, T:0.16
Consensus pattern (8 bp):
AAATGCCG
Found at i:58157891 original size:16 final size:16
Alignment explanation
Indices: 58157846--58157892 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 16
58157836 GCAAAAGCTA
*
58157846 AAATGCCGAAATGCCG
1 AAATGCAGAAATGCCG
* *
58157862 AAATACTGAAATGCCG
1 AAATGCAGAAATGCCG
*
58157878 AAATGCAGAGATGCC
1 AAATGCAGAAATGCC
58157893 AAAAGTTTGG
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
16 26 1.00
ACGTcount: A:0.40, C:0.21, G:0.23, T:0.15
Consensus pattern (16 bp):
AAATGCAGAAATGCCG
Found at i:58158187 original size:29 final size:29
Alignment explanation
Indices: 58158120--58158196 Score: 109
Period size: 29 Copynumber: 2.7 Consensus size: 29
58158110 AGAATGTGAC
* * * *
58158120 TGGGCCTAACGAGCCACATAAATGTGATT
1 TGGGCCTAATGGGCCATATAAAGGTGATT
*
58158149 TGGGCCTAATGGGCCATATACAGGTGATT
1 TGGGCCTAATGGGCCATATAAAGGTGATT
58158178 TGGGCCTAATGGGCCATAT
1 TGGGCCTAATGGGCCATAT
58158197 GAATATGATT
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.26
Consensus pattern (29 bp):
TGGGCCTAATGGGCCATATAAAGGTGATT
Found at i:58158205 original size:29 final size:28
Alignment explanation
Indices: 58158112--58158217 Score: 108
Period size: 29 Copynumber: 3.8 Consensus size: 28
58158102 CATGAATAAG
* * * *
58158112 AATGTGA-CTGGGCCTAACGAGCCACAT
1 AATGTGATTTGGGCCTAATGGGCCATAT
58158139 AAATGTGATTTGGGCCTAATGGGCCATAT
1 -AATGTGATTTGGGCCTAATGGGCCATAT
*
58158168 ACAGGTGATTTGGGCCTAATGGGCCATAT
1 A-ATGTGATTTGGGCCTAATGGGCCATAT
* *
58158197 GAATATGA-TTGGGCTTAATGG
1 -AATGTGATTTGGGCCTAATGG
58158218 ACAAGAAATA
Statistics
Matches: 67, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
28 20 0.30
29 46 0.69
30 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.27
Consensus pattern (28 bp):
AATGTGATTTGGGCCTAATGGGCCATAT
Found at i:58161151 original size:7 final size:7
Alignment explanation
Indices: 58161139--58161164 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
58161129 CCTAGATGAA
58161139 TTGGGCT
1 TTGGGCT
58161146 TTGGGCT
1 TTGGGCT
58161153 TTGGGCT
1 TTGGGCT
58161160 TTGGG
1 TTGGG
58161165 TTTCATAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.00, C:0.12, G:0.46, T:0.42
Consensus pattern (7 bp):
TTGGGCT
Found at i:58162338 original size:16 final size:16
Alignment explanation
Indices: 58162312--58162366 Score: 67
Period size: 16 Copynumber: 3.5 Consensus size: 16
58162302 TATGAATCAG
*
58162312 CGAAA-GCCAAAATGT
1 CGAAATGCCAAAATGC
58162327 CGAAATGCCAAAATGC
1 CGAAATGCCAAAATGC
* **
58162343 CAAAATGCTGAAATGC
1 CGAAATGCCAAAATGC
58162359 CGAAATGC
1 CGAAATGC
58162367 AGAAAAGCCA
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
15 5 0.15
16 29 0.85
ACGTcount: A:0.44, C:0.22, G:0.20, T:0.15
Consensus pattern (16 bp):
CGAAATGCCAAAATGC
Found at i:58162340 original size:8 final size:8
Alignment explanation
Indices: 58162317--58162379 Score: 56
Period size: 8 Copynumber: 7.9 Consensus size: 8
58162307 ATCAGCGAAA
58162317 GCCAAAAT
1 GCCAAAAT
* *
58162325 GTCGAAAT
1 GCCAAAAT
58162333 GCCAAAAT
1 GCCAAAAT
58162341 GCCAAAAT
1 GCCAAAAT
**
58162349 GCTGAAAT
1 GCCAAAAT
*
58162357 GCCGAAAT
1 GCCAAAAT
*
58162365 G-CAGAAAA
1 GCCA-AAAT
58162373 GCCAAAA
1 GCCAAAA
58162380 GTTTGGCTAC
Statistics
Matches: 44, Mismatches: 9, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
7 1 0.02
8 41 0.93
9 2 0.05
ACGTcount: A:0.48, C:0.21, G:0.19, T:0.13
Consensus pattern (8 bp):
GCCAAAAT
Found at i:58162349 original size:24 final size:24
Alignment explanation
Indices: 58162317--58162366 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
58162307 ATCAGCGAAA
58162317 GCCAAAATG-TCGAAATGCCAAAAT
1 GCCAAAATGCT-GAAATGCCAAAAT
*
58162341 GCCAAAATGCTGAAATGCCGAAAT
1 GCCAAAATGCTGAAATGCCAAAAT
58162365 GC
1 GC
58162367 AGAAAAGCCA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 23 0.96
25 1 0.04
ACGTcount: A:0.42, C:0.22, G:0.20, T:0.16
Consensus pattern (24 bp):
GCCAAAATGCTGAAATGCCAAAAT
Found at i:58162635 original size:29 final size:29
Alignment explanation
Indices: 58162602--58162703 Score: 125
Period size: 29 Copynumber: 3.6 Consensus size: 29
58162592 ATGAAATGAC
**
58162602 TGGGCCTAACAGGCCATATAAATGTGAAT
1 TGGGCCTAATGGGCCATATAAATGTGAAT
* * *
58162631 TGGGCCTAATGGGCCATATACAGGTGATT
1 TGGGCCTAATGGGCCATATAAATGTGAAT
* *
58162660 TGGGCCTAATGGGCCATATGAATATG-AT
1 TGGGCCTAATGGGCCATATAAATGTGAAT
*
58162688 TGGGCTTAATGGGCCA
1 TGGGCCTAATGGGCCA
58162704 GATACAAGTA
Statistics
Matches: 62, Mismatches: 11, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
28 16 0.26
29 46 0.74
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.26
Consensus pattern (29 bp):
TGGGCCTAATGGGCCATATAAATGTGAAT
Found at i:58169301 original size:39 final size:39
Alignment explanation
Indices: 58169153--58169335 Score: 176
Period size: 40 Copynumber: 4.6 Consensus size: 39
58169143 TTGAATGCTG
* * *
58169153 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGT-ATTAAT
** *
58169192 ATCCGGACTAAGAT-CCGAAGGTATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAG-TATTAAT
* *
58169233 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAG-TATTAAT
* * *
58169273 TCCGGGTTAAGT-CCGAAGGCATTCGTGCGAGTTTTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTATT-AAT
58169312 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
58169336 GAATGAGTTA
Statistics
Matches: 121, Mismatches: 15, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
38 2 0.02
39 32 0.26
40 76 0.63
41 11 0.09
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.28
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTATTAAT
Found at i:58169318 original size:79 final size:81
Alignment explanation
Indices: 58169153--58169332 Score: 228
Period size: 79 Copynumber: 2.3 Consensus size: 81
58169143 TTGAATGCTG
* * *
58169153 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGTATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
* *
58169217 TGTGCGAGTTATTAAT
66 CGTGCGAGTTATTAAA
**
58169233 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACTA-ATTCCGGGTTAAG-TCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACTATA-TCCGGACTAAGATCCGAAGGCA
58169294 TTCGTGCGAGTT-TTAAAA
64 TTCGTGCGAGTTATT-AAA
58169312 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
58169333 ATTGAATGAG
Statistics
Matches: 89, Mismatches: 7, Indels: 9
0.85 0.07 0.09
Matches are distributed among these distances:
78 2 0.02
79 44 0.49
80 34 0.38
81 9 0.10
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTATTAAA
Found at i:58169344 original size:39 final size:40
Alignment explanation
Indices: 58169233--58169382 Score: 137
Period size: 39 Copynumber: 3.8 Consensus size: 40
58169223 AGTTATTAAT
* ** * *
58169233 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACT-AAT
1 TCCGGGTTAAGTCCCGAAGG-CATTGAACGAGTTACTAAAA
** *
58169273 TCCGGGTTAAGT-CCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GAACGAGTTACTAAAA
* *
58169312 TCCGGGTTAAGTCCCGAAGGCATTGAATGAGTTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTGAACGAGTTACTAAAA
* *
58169352 -CCGGGCTATGTCCCGAAGGCACTTGAACGAG
1 TCCGGGTTAAGTCCCGAAGGCA-TTGAACGAG
58169383 GAGCTAAATC
Statistics
Matches: 93, Mismatches: 12, Indels: 10
0.81 0.10 0.09
Matches are distributed among these distances:
38 4 0.04
39 54 0.58
40 35 0.38
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTGAACGAGTTACTAAAA
Found at i:58169368 original size:79 final size:78
Alignment explanation
Indices: 58169153--58169372 Score: 219
Period size: 79 Copynumber: 2.8 Consensus size: 78
58169143 TTGAATGCTG
* ** * * * * *
58169153 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGTATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTG-AATGAGTTACTATATCCGGGCTAAG-TCCGAAGGCATTC
*
58169218 GTGCGAGTTATTAAT
64 GTGCGAGTTATTAAA
*** * *
58169233 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTA-ATTCCGGGTTAAGTCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGG-CTTTGAATGAGTTACTATA-TCCGGGCTAAGTCCGAAGGCATTC
58169297 GTGCGAGTT-TTAAAA
64 GTGCGAGTTATT-AAA
* * *
58169312 TCCGGGTTAAGTCCCGAAGGCATTGAATGAGTTACTATAACCGGGCTATGTCCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCTTTGAATGAGTTACTATATCCGGGCTAAGT-CCGAAGGCA
58169373 CTTGAACGAG
Statistics
Matches: 115, Mismatches: 20, Indels: 11
0.79 0.14 0.08
Matches are distributed among these distances:
78 23 0.20
79 53 0.46
80 34 0.30
81 5 0.04
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (78 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGAATGAGTTACTATATCCGGGCTAAGTCCGAAGGCATTCGT
GCGAGTTATTAAA
Found at i:58175599 original size:34 final size:34
Alignment explanation
Indices: 58175535--58175599 Score: 85
Period size: 34 Copynumber: 1.9 Consensus size: 34
58175525 TTTCTATTGG
* **
58175535 ACATTGATACAGTTACTATTATGGTTTAAGGCCC
1 ACATTGATACAGTTACTACTATGGGCTAAGGCCC
* *
58175569 ACATTGATACTGTTACTGCTATGGGCTAAGG
1 ACATTGATACAGTTACTACTATGGGCTAAGG
58175600 TCCTCACTAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
34 26 1.00
ACGTcount: A:0.28, C:0.17, G:0.22, T:0.34
Consensus pattern (34 bp):
ACATTGATACAGTTACTACTATGGGCTAAGGCCC
Found at i:58177393 original size:75 final size:79
Alignment explanation
Indices: 58177255--58177474 Score: 265
Period size: 75 Copynumber: 2.8 Consensus size: 79
58177245 TTGAATGATG
* * * *
58177255 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATATCCGGACTAAGAT-CCGAAGGCA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGA-T-ACTATAACCGGGCTAAG-TCCCGAAGGCA
*
58177317 TTTGTGCGAGATACTAAT
62 TTTGTGCGAGATACTAAA
*
58177335 TCCGGGCTAAG-CCGAAGGCATTTGTGCGAGATACTA-ATCCGGG-TAAG-CCCGAAGGCATTTG
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGATACTATAACCGGGCTAAGTCCCGAAGGCATTTG
*
58177396 TGCGAGTTACTAAA
66 TGCGAGATACTAAA
* * *
58177410 TCCGGGTTAAGTCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGATACTATAACCGGGCTAAGTCCCGAAGGCATTTG
58177475 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 9, Indels: 15
0.84 0.06 0.10
Matches are distributed among these distances:
75 35 0.28
76 28 0.23
77 12 0.10
78 14 0.11
79 23 0.19
80 12 0.10
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGATACTATAACCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGATACTAAA
Found at i:58177437 original size:39 final size:39
Alignment explanation
Indices: 58177255--58177474 Score: 261
Period size: 40 Copynumber: 5.6 Consensus size: 39
58177245 TTGAATGATG
* * * *
58177255 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
58177295 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
*
58177335 TCCGGGCTAAG-CCGAAGGCATTTGTGCGAGATACT-AA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
58177372 TCCGGG-TAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
58177410 TCCGGGTTAAGTCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTA-AA
*
58177450 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
58177475 AACGAGTAGC
Statistics
Matches: 160, Mismatches: 13, Indels: 14
0.86 0.07 0.07
Matches are distributed among these distances:
36 4 0.03
37 30 0.19
38 32 0.20
39 38 0.24
40 48 0.30
41 8 0.05
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:58192413 original size:40 final size:40
Alignment explanation
Indices: 58192356--58192559 Score: 295
Period size: 40 Copynumber: 5.1 Consensus size: 40
58192346 CGGATGATAA
* * * *
58192356 CCGGGCTAAGTCTCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
58192396 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
58192436 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
58192476 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
58192516 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
58192556 CCGG
1 CCGG
58192560 TTAAATCCCA
Statistics
Matches: 151, Mismatches: 11, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 3 0.02
40 148 0.98
ACGTcount: A:0.22, C:0.24, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:58198478 original size:40 final size:40
Alignment explanation
Indices: 58198423--58198614 Score: 208
Period size: 40 Copynumber: 4.8 Consensus size: 40
58198413 ATAACCACAA
* * *
58198423 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
*
58198463 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
* * *
58198503 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* * * * * *
58198543 GCATAAATGCCTTCGGGACTTAGCCCAGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* * *
58198583 GCATAAATGCCTTCGGGACTTAGCCAGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
58198615 CATTCAAATG
Statistics
Matches: 139, Mismatches: 12, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
39 1 0.01
40 134 0.96
41 4 0.03
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
Found at i:58203200 original size:39 final size:40
Alignment explanation
Indices: 58203065--58203288 Score: 233
Period size: 40 Copynumber: 5.7 Consensus size: 40
58203055 TTGAATGCTG
* * * * *
58203065 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
** * *
58203105 TCCGGACTAAGAT-CCGAAGTCATTTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
58203144 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAG-TACTAAA
1 -TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
58203184 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
58203224 TCCGGGTTAAGTCCCGAAGGCA-TTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
58203263 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
58203289 AACGAGGAGC
Statistics
Matches: 155, Mismatches: 22, Indels: 14
0.81 0.12 0.07
Matches are distributed among these distances:
39 67 0.43
40 80 0.52
41 8 0.05
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:58203213 original size:79 final size:78
Alignment explanation
Indices: 58203065--58203286 Score: 241
Period size: 79 Copynumber: 2.8 Consensus size: 78
58203055 TTGAATGCTG
* * * * * *
58203065 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGTCATT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGC-GAGT-ACTAAATCCGGGCTAAG-TCCCGAAGGCATT
*
58203129 TGTGCGAGATA-CAAA
63 CGTGCGAGATATCAAA
* *
58203144 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGTACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 -TCCGGGTTAAGTCCCGAAGG-CTTTGTGCGAGTACTAAATCCGGGCTAAGTCCCGAAGGCATTC
* *
58203209 GTGCGAGTTATTAAA
64 GTGCGAGATATCAAA
* * * *
58203224 TCCGGGTTAAGTCCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCGAG-TACTAAATCCGGGCTAAGTCCCGAAGGCATT
58203287 TGAACGAGGA
Statistics
Matches: 121, Mismatches: 17, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
78 10 0.08
79 79 0.65
80 24 0.20
81 8 0.07
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (78 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCGAGTACTAAATCCGGGCTAAGTCCCGAAGGCATTCGT
GCGAGATATCAAA
Found at i:58203306 original size:79 final size:79
Alignment explanation
Indices: 58203145--58203321 Score: 198
Period size: 79 Copynumber: 2.3 Consensus size: 79
58203135 AGATACAAAT
* * * *
58203145 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGTACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGTACTAAAACCGGGCTAAGTCCCGAAGGCATTCG
** * *
58203210 TGCGAGTTATTAAA
66 AACGAGTGACTAAA
* * *
58203224 TCCGGGTTAAGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAG-TACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
58203288 GAACGAG-GAGCTATA
65 GAACGAGTGA-CTAAA
*
58203303 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
58203322 TACGTGATTT
Statistics
Matches: 83, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
78 25 0.30
79 58 0.70
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGTACTAAAACCGGGCTAAGTCCCGAAGGCATTCG
AACGAGTGACTAAA
Found at i:58211055 original size:40 final size:37
Alignment explanation
Indices: 58211005--58211229 Score: 146
Period size: 40 Copynumber: 5.7 Consensus size: 37
58210995 TTGAATGCTG
58211005 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATA
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGC-AAGT-AATA-A
* * *
58211045 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTATTAA
1 TCCGGGCTAAG-TCCCGAAGGC-TTTGTGCAAG-TAATAA
* * *
58211084 TTCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGGTACTAAA
1 -TCCGGGCTAAGTCCCGAAGG-CTTTGTGC-AAGTAAT-AA
* * * *
58211125 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAA
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCAAG-TAATAA
* * ** *
58211164 GTCCGGGTTAAGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 -TCCGGGCTAAGTCCCGAAGGCTTTGTGCAAG-TAAT-AA
* *
58211204 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGC-TTTG
58211230 AACGAGGAGC
Statistics
Matches: 152, Mismatches: 20, Indels: 26
0.77 0.10 0.13
Matches are distributed among these distances:
39 35 0.23
40 104 0.68
41 13 0.09
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.27
Consensus pattern (37 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCAAGTAATAA
Found at i:58211142 original size:80 final size:79
Alignment explanation
Indices: 58211004--58211229 Score: 292
Period size: 80 Copynumber: 2.8 Consensus size: 79
58210994 ATTGAATGCT
* * * * * *
58211004 GTCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCAT
1 GTCCGGGTTAAGTCCCGAAGGCTTTGTGCGAGGT-ACTAAATCCGGGCTAAG-TCCCGAAGGCAT
58211068 TTGTGCGAGTTATTAA
64 TTGTGCGAGTTATTAA
* *
58211084 TTCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGGTACTAAATCCGGGTTAAGTCCCGAAGGCATT
1 GTCCGGGTTAAGTCCCGAAGG-CTTTGTGCGAGGTACTAAATCCGGGCTAAGTCCCGAAGGCATT
*
58211149 CGTGCGAGTTATTAA
65 TGTGCGAGTTATTAA
* * * * *
58211164 GTCCGGGTTAAGTCCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 GTCCGGGTTAAGTCCCGAAGGCTTTGTGCGAGGTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
58211229 G
66 G
58211230 AACGAGGAGC
Statistics
Matches: 127, Mismatches: 17, Indels: 5
0.85 0.11 0.03
Matches are distributed among these distances:
79 39 0.31
80 77 0.61
81 11 0.09
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (79 bp):
GTCCGGGTTAAGTCCCGAAGGCTTTGTGCGAGGTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGTTATTAA
Found at i:58211248 original size:79 final size:80
Alignment explanation
Indices: 58211004--58211262 Score: 206
Period size: 80 Copynumber: 3.3 Consensus size: 80
58210994 ATTGAATGCT
* * * * * * * *
58211004 GTCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCA
1 GTCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGGT-ACTAAAACCGGGCTAAG-TCCCGAAGGCA
* ** * *
58211067 TTTGTGCGAGTTATTAA
64 TTCGAACGAGTGACTAA
* * * *
58211084 TTCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGGTACTAAATCCGGGTTAAGTCCCGAAGGCATT
1 GTCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGGTACTAAAACCGGGCTAAGTCCCGAAGGCATT
** * *
58211149 CGTGCGAGTTATTAA
66 CGAACGAGTGACTAA
* * *
58211164 GTCCGGGTTAAGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 GTCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGGTACTAAAACCGGGCTAAGTCCCGAAGGCATT
*
58211228 TGAACGAG-GAGCTATA
66 CGAACGAGTGA-CTA-A
*
58211244 -TCC-GGTTAAATCCCGAAGG
1 GTCCGGGTTAAGTCCCGAAGG
58211263 TACGTGATTT
Statistics
Matches: 153, Mismatches: 22, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
78 16 0.10
79 48 0.31
80 78 0.51
81 11 0.07
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.26
Consensus pattern (80 bp):
GTCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGGTACTAAAACCGGGCTAAGTCCCGAAGGCATT
CGAACGAGTGACTAA
Found at i:58222378 original size:6 final size:6
Alignment explanation
Indices: 58222239--58222362 Score: 113
Period size: 6 Copynumber: 20.7 Consensus size: 6
58222229 TTCTATTTCA
* * * * *
58222239 ATTTTA ATTTCG ATTCTG ATTTTG ATTTTA ATTTCG ATTTTG ATTTTG
1 ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG
*** * * * * *
58222287 ATTTTG ATTTTG ATTCCA ATTTTG ATCTCG ATTTAG ATTTAG AATTTG
1 ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG
* *
58222335 ATTTTG ATTTGG ATTTGG ATTTTG ATTT
1 ATTTTG ATTTTG ATTTTG ATTTTG ATTT
58222363 AGGGTTATTT
Statistics
Matches: 94, Mismatches: 24, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
6 94 1.00
ACGTcount: A:0.22, C:0.06, G:0.15, T:0.57
Consensus pattern (6 bp):
ATTTTG
Found at i:58222458 original size:48 final size:48
Alignment explanation
Indices: 58222399--58222567 Score: 232
Period size: 48 Copynumber: 3.5 Consensus size: 48
58222389 GCCATGTGCA
* * * *
58222399 TGATGTTTATTGTTTGTTTCTGCCATTGTATGAATGCCATTATCAAAT
1 TGATGTGTATTGTGTATATCTGCCATTGTATGAATGCCATTATCAAAT
* *
58222447 TGATGTGTATTGTGTATATCTGTCATTGTATGAACGCCATTATCAAAT
1 TGATGTGTATTGTGTATATCTGCCATTGTATGAATGCCATTATCAAAT
* *
58222495 TGATGTGTATTGTGTAAATCTGCCATTGTATGAATG-CATTATCAAAC
1 TGATGTGTATTGTGTATATCTGCCATTGTATGAATGCCATTATCAAAT
* * *
58222542 TGATGTTTATTGTGCATATCTTCCAT
1 TGATGTGTATTGTGTATATCTGCCAT
58222568 GATGTTTATT
Statistics
Matches: 107, Mismatches: 14, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
47 32 0.30
48 75 0.70
ACGTcount: A:0.25, C:0.13, G:0.18, T:0.44
Consensus pattern (48 bp):
TGATGTGTATTGTGTATATCTGCCATTGTATGAATGCCATTATCAAAT
Found at i:58224633 original size:43 final size:43
Alignment explanation
Indices: 58224542--58224760 Score: 315
Period size: 43 Copynumber: 5.2 Consensus size: 43
58224532 TTGCTGATCA
* * *
58224542 CATGCACTGATTGTTCGAAAGCTATTGACT-TTTTTTAATATG
1 CATGCAATGATTGTTGGAAAGCTGTTGACTATTTTTTAATATG
*
58224584 TATGCAATGATTGTTGGAAAGCTGTTGACTATTTTTTAATATG
1 CATGCAATGATTGTTGGAAAGCTGTTGACTATTTTTTAATATG
* * *
58224627 GATGCAATGATTGTTGGAAAGCTATTGAC--TTTTTTAATGTG
1 CATGCAATGATTGTTGGAAAGCTGTTGACTATTTTTTAATATG
58224668 CATGCAATGATTGTTGGAAAGCTGTTGACTATTTTTTAATATG
1 CATGCAATGATTGTTGGAAAGCTGTTGACTATTTTTTAATATG
* *
58224711 CATGCAATGATTGTTGG--TG-TGTTGTCTATTTTTTAATATG
1 CATGCAATGATTGTTGGAAAGCTGTTGACTATTTTTTAATATG
58224751 CATGCAATGA
1 CATGCAATGA
58224761 GTTTTTTTTA
Statistics
Matches: 162, Mismatches: 12, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
40 30 0.19
41 39 0.24
42 26 0.16
43 67 0.41
ACGTcount: A:0.26, C:0.10, G:0.21, T:0.43
Consensus pattern (43 bp):
CATGCAATGATTGTTGGAAAGCTGTTGACTATTTTTTAATATG
Found at i:58224691 original size:84 final size:85
Alignment explanation
Indices: 58224542--58224760 Score: 329
Period size: 84 Copynumber: 2.6 Consensus size: 85
58224532 TTGCTGATCA
* * *
58224542 CATGCACTGATTGTTCGAAAGCTATTGACTTTTTTTAATATGTATGCAATGATTGTTGGAAAGCT
1 CATGCAATGATTGTTGGAAAGCTATTGACTTTTTTTAATATGCATGCAATGATTGTTGGAAAGCT
58224607 GTTGACTATTTTTTAATATG
66 GTTGACTATTTTTTAATATG
* *
58224627 GATGCAATGATTGTTGGAAAGCTATTGAC-TTTTTTAATGTGCATGCAATGATTGTTGGAAAGCT
1 CATGCAATGATTGTTGGAAAGCTATTGACTTTTTTTAATATGCATGCAATGATTGTTGGAAAGCT
58224691 GTTGACTATTTTTTAATATG
66 GTTGACTATTTTTTAATATG
* * *
58224711 CATGCAATGATTGTTGG--TG-TGTTGTCTATTTTTTAATATGCATGCAATGA
1 CATGCAATGATTGTTGGAAAGCTATTGACT-TTTTTTAATATGCATGCAATGA
58224761 GTTTTTTTTA
Statistics
Matches: 122, Mismatches: 10, Indels: 6
0.88 0.07 0.04
Matches are distributed among these distances:
81 5 0.04
82 1 0.01
83 21 0.17
84 69 0.57
85 26 0.21
ACGTcount: A:0.26, C:0.10, G:0.21, T:0.43
Consensus pattern (85 bp):
CATGCAATGATTGTTGGAAAGCTATTGACTTTTTTTAATATGCATGCAATGATTGTTGGAAAGCT
GTTGACTATTTTTTAATATG
Found at i:58225474 original size:21 final size:21
Alignment explanation
Indices: 58225450--58225503 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 21
58225440 AGCAAAAGGG
* *
58225450 TACCCCAACTCAGTTACCTTC
1 TACCCCAACTCAGATACCTAC
58225471 TACCCCAACTCAGATACCTAC
1 TACCCCAACTCAGATACCTAC
*
58225492 TGCCCCAACTCA
1 TACCCCAACTCA
58225504 TCAAGAAGCT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.28, C:0.44, G:0.06, T:0.22
Consensus pattern (21 bp):
TACCCCAACTCAGATACCTAC
Found at i:58225994 original size:59 final size:59
Alignment explanation
Indices: 58225902--58226040 Score: 215
Period size: 59 Copynumber: 2.4 Consensus size: 59
58225892 TATTTGTTAT
* * *
58225902 CCAACTGTTAAGCAATTTATATGCCAACTGTTATCTTTTCTAACTAGCAGCCATGTATA
1 CCAACTGTTAAGCAATTTGTATACCAACTGTTATCTTTTCTAACCAGCAGCCATGTATA
* * *
58225961 CCAACTGTTAAGCAATTTGTATATCAATTGTTATCTTTTCTAACCAGCAGTCATGTATA
1 CCAACTGTTAAGCAATTTGTATACCAACTGTTATCTTTTCTAACCAGCAGCCATGTATA
*
58226020 CCAAGTGTTAAGCAATTTGTA
1 CCAACTGTTAAGCAATTTGTA
58226041 AACAACAACA
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
59 73 1.00
ACGTcount: A:0.31, C:0.19, G:0.13, T:0.37
Consensus pattern (59 bp):
CCAACTGTTAAGCAATTTGTATACCAACTGTTATCTTTTCTAACCAGCAGCCATGTATA
Found at i:58226613 original size:20 final size:20
Alignment explanation
Indices: 58226588--58226626 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
58226578 ATATTCATTT
58226588 TTCCT-CTTCTCCTTCTTCTC
1 TTCCTCCTTCT-CTTCTTCTC
58226608 TTCCTCCTTCTCTTCTTCT
1 TTCCTCCTTCTCTTCTTCT
58226627 TATTTTTCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.00, C:0.44, G:0.00, T:0.56
Consensus pattern (20 bp):
TTCCTCCTTCTCTTCTTCTC
Found at i:58227757 original size:16 final size:16
Alignment explanation
Indices: 58227738--58227771 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
58227728 ATATTTTTAC
58227738 CAATTGAGATTTCTGT
1 CAATTGAGATTTCTGT
58227754 CAATTGAGATTTCTGT
1 CAATTGAGATTTCTGT
58227770 CA
1 CA
58227772 TGCCTTTGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.26, C:0.15, G:0.18, T:0.41
Consensus pattern (16 bp):
CAATTGAGATTTCTGT
Found at i:58232825 original size:34 final size:34
Alignment explanation
Indices: 58232782--58232855 Score: 130
Period size: 34 Copynumber: 2.2 Consensus size: 34
58232772 CTAAGCTCAC
*
58232782 GTGAATCTCGACAAATAGTTGTCTAGATTTTATT
1 GTGAATCTCGACAAATAGTTGTCTAGATTTCATT
58232816 GTGAATCTCGACAAATAGTTGTCTAGATTTCATT
1 GTGAATCTCGACAAATAGTTGTCTAGATTTCATT
*
58232850 TTGAAT
1 GTGAAT
58232856 GTGATTCAGA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
34 38 1.00
ACGTcount: A:0.30, C:0.12, G:0.18, T:0.41
Consensus pattern (34 bp):
GTGAATCTCGACAAATAGTTGTCTAGATTTCATT
Found at i:58233638 original size:10 final size:10
Alignment explanation
Indices: 58233605--58233646 Score: 52
Period size: 10 Copynumber: 4.3 Consensus size: 10
58233595 AAATATTTTG
58233605 AAATATATAT
1 AAATATATAT
*
58233615 AAA-AAAT-T
1 AAATATATAT
58233623 ATAATATATAT
1 A-AATATATAT
58233634 AAATATATAT
1 AAATATATAT
58233644 AAA
1 AAA
58233647 AGAACTAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
8 2 0.07
9 5 0.19
10 18 0.67
11 2 0.07
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (10 bp):
AAATATATAT
Found at i:58235629 original size:14 final size:14
Alignment explanation
Indices: 58235610--58235637 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
58235600 TTGAGGTAAG
58235610 TTCGTGTGAACTAT
1 TTCGTGTGAACTAT
58235624 TTCGTGTGAACTAT
1 TTCGTGTGAACTAT
58235638 AATCGTTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.14, G:0.21, T:0.43
Consensus pattern (14 bp):
TTCGTGTGAACTAT
Found at i:58244078 original size:19 final size:18
Alignment explanation
Indices: 58244054--58244097 Score: 54
Period size: 17 Copynumber: 2.4 Consensus size: 18
58244044 ATTTTTATAT
*
58244054 AATAAAGATAATGTTTTTG
1 AATAAAGA-AATATTTTTG
*
58244073 AATAAA-AATTATTTTTG
1 AATAAAGAAATATTTTTG
58244090 AATAAAGA
1 AATAAAGA
58244098 CTTAAATGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
17 14 0.64
18 2 0.09
19 6 0.27
ACGTcount: A:0.50, C:0.00, G:0.11, T:0.39
Consensus pattern (18 bp):
AATAAAGAAATATTTTTG
Found at i:58256535 original size:19 final size:19
Alignment explanation
Indices: 58256513--58256595 Score: 62
Period size: 19 Copynumber: 4.3 Consensus size: 19
58256503 TTTTGATGCA
58256513 TTTTATAATTTTTAATAAT
1 TTTTATAATTTTTAATAAT
*
58256532 TTTTA-AATATATTTTAT-AT
1 TTTTATAAT-T-TTTAATAAT
** *
58256551 TTTTATTAAAATTTAGTAAT
1 TTTTA-TAATTTTTAATAAT
* * *
58256571 TTTTATAACTTTTATTGAT
1 TTTTATAATTTTTAATAAT
58256590 TTTTAT
1 TTTTAT
58256596 TTTTTATAAA
Statistics
Matches: 50, Mismatches: 9, Indels: 10
0.72 0.13 0.14
Matches are distributed among these distances:
18 3 0.06
19 33 0.66
20 12 0.24
21 2 0.04
ACGTcount: A:0.34, C:0.01, G:0.02, T:0.63
Consensus pattern (19 bp):
TTTTATAATTTTTAATAAT
Found at i:58257724 original size:13 final size:15
Alignment explanation
Indices: 58257702--58257733 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
58257692 TATCTTATTT
58257702 TATTATTAATTAA-A
1 TATTATTAATTAACA
58257716 TATTA-TAATTAACA
1 TATTATTAATTAACA
58257730 TATT
1 TATT
58257734 TCCTCTTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 7 0.41
14 10 0.59
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (15 bp):
TATTATTAATTAACA
Found at i:58258418 original size:88 final size:89
Alignment explanation
Indices: 58258211--58258431 Score: 275
Period size: 88 Copynumber: 2.5 Consensus size: 89
58258201 GTTGTTACAG
* * *
58258211 AGGGGCTTAATTGCTTTTTTTTGAAAAATTTTGAAGACCTTTTTGATGCATTTTGAAAGTTCAAG
1 AGGGGCTTAATTAC-TTTTTTTGAAAAAGTTTGAAGA-CTTTTTGATGCATTTTGAAAGTTCAAA
*
58258276 TACTCAATTGAGTGAAAAAAAAGAGT
64 TACCCAATTGAGTGAAAAAAAAGAGT
* * * **
58258302 AAGCGCTTAATTACTTTTTTTGAAAAAGTTTGATGACTTTTTTTTGCATTTTGAAAGTTCAAATA
1 AGGGGCTTAATTACTTTTTTTGAAAAAGTTTGAAGACTTTTTGATGCATTTTGAAAGTTCAAATA
*
58258367 CCCAA-TGAGTGCAAAGAAAA-AGT
66 CCCAATTGAGTG-AAAAAAAAGAGT
* * * *
58258390 AGGGGCTTAATTACATTTCTTGAAAAAGTTTGAGGGCTTTTT
1 AGGGGCTTAATTACTTTTTTTGAAAAAGTTTGAAGACTTTTT
58258432 ACACTCTTAA
Statistics
Matches: 113, Mismatches: 16, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
88 45 0.40
89 37 0.33
90 20 0.18
91 11 0.10
ACGTcount: A:0.33, C:0.10, G:0.19, T:0.38
Consensus pattern (89 bp):
AGGGGCTTAATTACTTTTTTTGAAAAAGTTTGAAGACTTTTTGATGCATTTTGAAAGTTCAAATA
CCCAATTGAGTGAAAAAAAAGAGT
Found at i:58258554 original size:17 final size:19
Alignment explanation
Indices: 58258520--58258557 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
58258510 CACAAACAAC
58258520 TTTAAAAAATTATCATTTT
1 TTTAAAAAATTATCATTTT
*
58258539 TTTAAAATATT-T-ATTTT
1 TTTAAAAAATTATCATTTT
58258556 TT
1 TT
58258558 AATATTCTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 7 0.39
18 1 0.06
19 10 0.56
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.61
Consensus pattern (19 bp):
TTTAAAAAATTATCATTTT
Found at i:58260000 original size:16 final size:16
Alignment explanation
Indices: 58259967--58260000 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
58259957 CCCAACTGTT
* *
58259967 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
58259983 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
58259999 AA
1 AA
58260001 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:58262822 original size:21 final size:21
Alignment explanation
Indices: 58262796--58262836 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
58262786 AGACGAGCAA
* *
58262796 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
58262817 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
58262837 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:58265645 original size:22 final size:25
Alignment explanation
Indices: 58265618--58265669 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 25
58265608 AATATTATTT
58265618 TTAATT-TTTATTAAA-TAAAAA-A
1 TTAATTATTTATTAAATTAAAAATA
*
58265640 TTAATTAATTTTTTAAATTAAAAATA
1 TTAATT-ATTTATTAAATTAAAAATA
58265666 TTAA
1 TTAA
58265670 AAAGTTTAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
22 6 0.24
24 8 0.32
25 6 0.24
26 5 0.20
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (25 bp):
TTAATTATTTATTAAATTAAAAATA
Found at i:58265650 original size:26 final size:26
Alignment explanation
Indices: 58265618--58265669 Score: 72
Period size: 25 Copynumber: 2.0 Consensus size: 26
58265608 AATATTATTT
58265618 TTAATTTTTATTAAA-TAAAAA-ATTAA
1 TTAA-TTTT-TTAAATTAAAAATATTAA
58265644 TTAATTTTTTAAATTAAAAATATTAA
1 TTAATTTTTTAAATTAAAAATATTAA
58265670 AAAGTTTAAG
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
24 5 0.21
25 10 0.42
26 9 0.38
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (26 bp):
TTAATTTTTTAAATTAAAAATATTAA
Found at i:58272137 original size:14 final size:14
Alignment explanation
Indices: 58272118--58272144 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
58272108 GGCAGAGGAA
58272118 AAGAAAATTCACTT
1 AAGAAAATTCACTT
58272132 AAGAAAATTCACT
1 AAGAAAATTCACT
58272145 ATGTCGAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.15, G:0.07, T:0.26
Consensus pattern (14 bp):
AAGAAAATTCACTT
Found at i:58276484 original size:5 final size:5
Alignment explanation
Indices: 58276474--58276521 Score: 96
Period size: 5 Copynumber: 9.6 Consensus size: 5
58276464 CCAATTTGTG
58276474 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
58276522 GAACACACAA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 43 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:58277715 original size:26 final size:26
Alignment explanation
Indices: 58277661--58277716 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
58277651 ATTTAATCAC
** *
58277661 ATAACTTCTAAACTTTATTCATTATA
1 ATAACTTCTAAACTTTATGAATTACA
58277687 ATAACTTCTAAACTTTCATGAATT-CA
1 ATAACTTCTAAACTTT-ATGAATTACA
58277713 ATAA
1 ATAA
58277717 AGTAGTTACC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 21 0.81
27 5 0.19
ACGTcount: A:0.41, C:0.16, G:0.02, T:0.41
Consensus pattern (26 bp):
ATAACTTCTAAACTTTATGAATTACA
Found at i:58281639 original size:2 final size:2
Alignment explanation
Indices: 58281632--58281667 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
58281622 TTAAAAGAAA
58281632 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
58281668 TAGATTTTAC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:58285580 original size:35 final size:35
Alignment explanation
Indices: 58285536--58285637 Score: 134
Period size: 35 Copynumber: 2.9 Consensus size: 35
58285526 ACTAGAGCAA
*
58285536 CATCATGGAAATGATCTATTGGCTTTATGGAGCGG
1 CATCATGGAAATGATCTATTGGCTTTACGGAGCGG
* * ** *
58285571 CATCATGGAAGTGATCTATTGGCTCTACCAAGTGG
1 CATCATGGAAATGATCTATTGGCTTTACGGAGCGG
58285606 CATCATAGG-AATGATCTATTGGCTTTACGGAG
1 CATCAT-GGAAATGATCTATTGGCTTTACGGAG
58285638 TGATACCATG
Statistics
Matches: 56, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
35 54 0.96
36 2 0.04
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (35 bp):
CATCATGGAAATGATCTATTGGCTTTACGGAGCGG
Found at i:58288054 original size:20 final size:20
Alignment explanation
Indices: 58288013--58288076 Score: 87
Period size: 20 Copynumber: 3.3 Consensus size: 20
58288003 AGTCACATGC
* *
58288013 CCGTGTGG-TT-GTACACGT
1 CCGTGTGGCTTGGGACACGA
58288031 CCGTGTGGCTTGGGACACGA
1 CCGTGTGGCTTGGGACACGA
*
58288051 CCGTGTGGCTTGGGACACGG
1 CCGTGTGGCTTGGGACACGA
58288071 CCGTGT
1 CCGTGT
58288077 CCTTATCCCG
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
18 8 0.20
19 2 0.05
20 31 0.76
ACGTcount: A:0.11, C:0.25, G:0.39, T:0.25
Consensus pattern (20 bp):
CCGTGTGGCTTGGGACACGA
Found at i:58292256 original size:35 final size:38
Alignment explanation
Indices: 58292195--58292268 Score: 127
Period size: 35 Copynumber: 2.0 Consensus size: 38
58292185 TTTTGAAACC
58292195 ATTAACTCTTTTTTCTTTTTGGTTACATGAACCAATTA
1 ATTAACTCTTTTTTCTTTTTGGTTACATGAACCAATTA
58292233 ATTAACTC-TTTTT-TTTTT-GTTACATGAACCAATTA
1 ATTAACTCTTTTTTCTTTTTGGTTACATGAACCAATTA
58292268 A
1 A
58292269 CTTTAATTCA
Statistics
Matches: 36, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
35 18 0.50
36 5 0.14
37 5 0.14
38 8 0.22
ACGTcount: A:0.28, C:0.15, G:0.07, T:0.50
Consensus pattern (38 bp):
ATTAACTCTTTTTTCTTTTTGGTTACATGAACCAATTA
Found at i:58292369 original size:26 final size:26
Alignment explanation
Indices: 58292340--58292403 Score: 74
Period size: 27 Copynumber: 2.4 Consensus size: 26
58292330 AAATATTCTT
*
58292340 TAAATTAATAAATATTAATGTATCGA
1 TAAACTAATAAATATTAATGTATCGA
* * * *
58292366 TAAAGTAATAAAATTTTCATTTATCGA
1 TAAACTAAT-AAATATTAATGTATCGA
58292393 TAAACTAATAA
1 TAAACTAATAA
58292404 CCTTGATAAA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
26 10 0.31
27 22 0.69
ACGTcount: A:0.50, C:0.06, G:0.06, T:0.38
Consensus pattern (26 bp):
TAAACTAATAAATATTAATGTATCGA
Found at i:58302674 original size:28 final size:28
Alignment explanation
Indices: 58302634--58302703 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 28
58302624 ATAGTAAGTC
* *
58302634 CGCACGCTTAGTGCT-TAATAATCAAACT
1 CGCACACTTAGTGCTAT-ACAATCAAACT
*
58302662 CGCACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAATCAAACT
58302690 CGCACACTTAGTGC
1 CGCACACTTAGTGC
58302704 CAATCTCATT
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
28 37 0.97
29 1 0.03
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAATCAAACT
Found at i:58309177 original size:22 final size:22
Alignment explanation
Indices: 58309148--58309205 Score: 80
Period size: 22 Copynumber: 2.6 Consensus size: 22
58309138 ACACAGGGGC
* *
58309148 ACACGCCCATGTGGAAGGGACA
1 ACACGCCCGTGTGAAAGGGACA
* *
58309170 ACATGCCCGTGTGAAAGGGGCA
1 ACACGCCCGTGTGAAAGGGACA
58309192 ACACGCCCGTGTGA
1 ACACGCCCGTGTGA
58309206 TCAATTTGAC
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.28, C:0.28, G:0.33, T:0.12
Consensus pattern (22 bp):
ACACGCCCGTGTGAAAGGGACA
Found at i:58310511 original size:45 final size:45
Alignment explanation
Indices: 58310441--58310564 Score: 144
Period size: 45 Copynumber: 2.7 Consensus size: 45
58310431 GTTTCATAGT
* *
58310441 CGATGCATGTCCTAGACATGTCTTACACTGGC-TTACATCT-AGAGGC
1 CGATGCATGTCC-AGACATGTCTTACACTAGCACT-CATCTCA-AGGC
* *
58310487 CGATGCATGTCCAGACATGTCTTACACTAGCACTCGTCTCAATGC
1 CGATGCATGTCCAGACATGTCTTACACTAGCACTCATCTCAAGGC
58310532 CGATGCCATGTCCCAGACATGGTCTTACACTAG
1 CGATG-CATGT-CCAGACAT-GTCTTACACTAG
58310565 TTTACACAAG
Statistics
Matches: 69, Mismatches: 4, Indels: 8
0.85 0.05 0.10
Matches are distributed among these distances:
45 30 0.43
46 19 0.28
47 8 0.12
48 12 0.17
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (45 bp):
CGATGCATGTCCAGACATGTCTTACACTAGCACTCATCTCAAGGC
Found at i:58310557 original size:93 final size:93
Alignment explanation
Indices: 58310343--58310562 Score: 229
Period size: 93 Copynumber: 2.4 Consensus size: 93
58310333 TGGGGTAAGG
* * * *
58310343 TGCCGATGCCGTGTCCCAGACACGGTCTTACACTGGCTCATATCTCAAGTCGAAGCCATGTCCCA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAAGCCGAAGCCATGTCCCA
* *
58310408 GACATGGTCTTAAATTGACTATCGTTTCA
66 GACATGGTCTTAAATAGAC-ATCGTCTCA
* * * *
58310437 TAGTCGATG-CATGTCCTAGACAT-GTCTTACACTGGCTTACATCT-AGAGGCCGATG-CATGT-
1 T-GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCA-A-GCCGAAGCCATGTC
*
58310497 CCAGACAT-GTCTTACACTAG-CACTCGTCTCAA
63 CCAGACATGGTCTTA-AATAGACA-TCGTCTC-A
58310529 TGCCGATGCCATGTCCCAGACATGGTCTTACACT
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACT
58310563 AGTTTACACA
Statistics
Matches: 105, Mismatches: 13, Indels: 17
0.78 0.10 0.13
Matches are distributed among these distances:
90 1 0.01
91 19 0.18
92 27 0.26
93 35 0.33
94 17 0.16
95 6 0.06
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.28
Consensus pattern (93 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAAGCCGAAGCCATGTCCCA
GACATGGTCTTAAATAGACATCGTCTCA
Found at i:58314180 original size:28 final size:28
Alignment explanation
Indices: 58314148--58314208 Score: 104
Period size: 28 Copynumber: 2.2 Consensus size: 28
58314138 GAAGGTTACA
58314148 CATTTTCTGTTTTTGTTTCTGTAGTTGG
1 CATTTTCTGTTTTTGTTTCTGTAGTTGG
* *
58314176 CATTTTTTGTTTTTGTTTTTGTAGTTGG
1 CATTTTCTGTTTTTGTTTCTGTAGTTGG
58314204 CATTT
1 CATTT
58314209 ATTTGTTTCG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.08, C:0.08, G:0.20, T:0.64
Consensus pattern (28 bp):
CATTTTCTGTTTTTGTTTCTGTAGTTGG
Found at i:58316785 original size:21 final size:23
Alignment explanation
Indices: 58316754--58316795 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
58316744 TTAGGTTCAT
58316754 TTTAGAGCTCACATA-AGCTCAA
1 TTTAGAGCTCACATATAGCTCAA
*
58316776 TTTAG-GCTCAGATATAGCTC
1 TTTAGAGCTCACATATAGCTC
58316796 TATATTATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.31
Consensus pattern (23 bp):
TTTAGAGCTCACATATAGCTCAA
Found at i:58319519 original size:40 final size:40
Alignment explanation
Indices: 58319421--58319638 Score: 293
Period size: 40 Copynumber: 5.5 Consensus size: 40
58319411 TGGATGATAA
*
58319421 CCGGGCTAAGTCCCGAAGGCATTT-TGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCG--AGTTACTA-TAT
* *
58319462 CTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
58319502 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
58319542 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
58319582 CCGGGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
58319621 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
58319639 TACTTGGCTT
Statistics
Matches: 162, Mismatches: 12, Indels: 9
0.89 0.07 0.05
Matches are distributed among these distances:
38 15 0.09
39 16 0.10
40 104 0.64
41 23 0.14
42 4 0.02
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:58322608 original size:42 final size:42
Alignment explanation
Indices: 58322521--58322614 Score: 109
Period size: 42 Copynumber: 2.2 Consensus size: 42
58322511 GGGACACCAC
* * ** *
58322521 ATCGATGCCATATTCCAGATATGGTCTTATACGGGACCTCAT
1 ATCGATGCCATAGTCCAGACATGGTCTTATACGAAACCACAT
* *
58322563 ATCGATGCCAT-GTCCTAGACATGGTCTTATACGAAATCACTT
1 ATCGATGCCATAGTCC-AGACATGGTCTTATACGAAACCACAT
58322605 ATCGATGCCA
1 ATCGATGCCA
58322615 AAGCCATATC
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
41 3 0.07
42 41 0.93
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (42 bp):
ATCGATGCCATAGTCCAGACATGGTCTTATACGAAACCACAT
Found at i:58325023 original size:77 final size:76
Alignment explanation
Indices: 58324906--58325104 Score: 226
Period size: 77 Copynumber: 2.6 Consensus size: 76
58324896 AATTGTATTC
* * * *
58324906 TGTTTCAAATAG-AATTCAATTGAACAATCCTATTTTAGGATTTTATTCCTACCGTTTAACAAGA
1 TGTTTCAAATAGAAAAT-AATTGAACAATCTTGTTTCAGGATTTTATTCCTACCGTTTAA-AAGA
58324970 TTTTTTT-ATTTT
64 TTTTTTTGATTTT
** * *
58324982 TGTTTCAAATAGAAAATAAATTGAACAATCTTGTTTCAGGATTTTATTGTTGCCGTTTAAAGGAT
1 TGTTTCAAATAGAAAAT-AATTGAACAATCTTGTTTCAGGATTTTATTCCTACCGTTTAAAAGAT
58325047 TTTTTTGATTTT
65 TTTTTTGATTTT
* *
58325059 TGTTTTAAACAGAAAACTAATTGAACAAT-TCTG-TTCAGGAATTTTA
1 TGTTTCAAATAGAAAA-TAATTGAACAATCT-TGTTTCAGG-ATTTTA
58325105 ATTGAACAAT
Statistics
Matches: 107, Mismatches: 11, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
76 29 0.27
77 77 0.72
78 1 0.01
ACGTcount: A:0.32, C:0.11, G:0.13, T:0.45
Consensus pattern (76 bp):
TGTTTCAAATAGAAAATAATTGAACAATCTTGTTTCAGGATTTTATTCCTACCGTTTAAAAGATT
TTTTTGATTTT
Found at i:58325106 original size:27 final size:27
Alignment explanation
Indices: 58325076--58325131 Score: 94
Period size: 27 Copynumber: 2.1 Consensus size: 27
58325066 AACAGAAAAC
*
58325076 TAATTGAACAATTCTGTTCAGGAATTT
1 TAATTGAACAATTCTGTTCAAGAATTT
*
58325103 TAATTGAACAATTCTGTTCAAGATTTT
1 TAATTGAACAATTCTGTTCAAGAATTT
58325130 TA
1 TA
58325132 TTCCTGCTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.34, C:0.11, G:0.12, T:0.43
Consensus pattern (27 bp):
TAATTGAACAATTCTGTTCAAGAATTT
Found at i:58333895 original size:27 final size:27
Alignment explanation
Indices: 58333865--58334042 Score: 115
Period size: 27 Copynumber: 6.6 Consensus size: 27
58333855 ATATTGAGCC
* * *
58333865 CGCACACTCAGTGCTATACAATCAACT
1 CGCACACTTAGTGCTACACAATCAAAT
* **
58333892 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACACAATCAAAT
* * * *
58333919 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCTACACAATCA-AAT
** *** *
58333947 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACACAATCAAAT
* * **
58333974 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CACAATCAAAT
* * * *
58334001 CGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTACACAATCAAAT
58334028 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
58334043 GTACAATTTA
Statistics
Matches: 123, Mismatches: 25, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
27 100 0.81
28 23 0.19
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACACAATCAAAT
Found at i:58333958 original size:55 final size:55
Alignment explanation
Indices: 58333865--58334042 Score: 204
Period size: 54 Copynumber: 3.3 Consensus size: 55
58333855 ATATTGAGCC
* * *
58333865 CGCACACTCAGTGCTATACA-A-TCAACTCGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTAT-CATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
* * *
58333919 CGCACACTTAGTGCTA-CATAGTT-AGACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTATCATA-TTCA-ACTCGCACACTTAGTGCCACATAGTCAAAT
** * *
58333974 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
58334028 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
58334043 GTACAATTTA
Statistics
Matches: 104, Mismatches: 13, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
52 2 0.02
53 1 0.01
54 56 0.54
55 45 0.43
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:58334004 original size:82 final size:81
Alignment explanation
Indices: 58333886--58334041 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
58333876 TGCTATACAA
* * *
58333886 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTTAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAG-TAGAATCGCA
58333951 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
58333968 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCA
58334032 CACTTAGTGC
65 CACTTAGTGC
58334042 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 20 0.31
82 45 0.69
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:58341754 original size:27 final size:27
Alignment explanation
Indices: 58341724--58341901 Score: 115
Period size: 27 Copynumber: 6.6 Consensus size: 27
58341714 ATATTGAGCC
* * *
58341724 CGCACACTCAGTGCTATACAATCAACT
1 CGCACACTTAGTGCTACACAATCAAAT
* **
58341751 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACACAATCAAAT
* * * *
58341778 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCTACACAATCA-AAT
** *** *
58341806 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACACAATCAAAT
* * **
58341833 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CACAATCAAAT
* * * *
58341860 CGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTACACAATCAAAT
58341887 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
58341902 GTACAATTTA
Statistics
Matches: 123, Mismatches: 25, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
27 100 0.81
28 23 0.19
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACACAATCAAAT
Found at i:58341817 original size:55 final size:55
Alignment explanation
Indices: 58341724--58341901 Score: 204
Period size: 54 Copynumber: 3.3 Consensus size: 55
58341714 ATATTGAGCC
* * *
58341724 CGCACACTCAGTGCTATACA-A-TCAACTCGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTAT-CATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
* * *
58341778 CGCACACTTAGTGCTA-CATAGTT-AGACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTATCATA-TTCA-ACTCGCACACTTAGTGCCACATAGTCAAAT
** * *
58341833 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
58341887 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
58341902 GTACAATTTA
Statistics
Matches: 104, Mismatches: 13, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
52 2 0.02
53 1 0.01
54 56 0.54
55 45 0.43
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:58341863 original size:82 final size:81
Alignment explanation
Indices: 58341745--58341900 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
58341735 TGCTATACAA
* * *
58341745 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTTAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAG-TAGAATCGCA
58341810 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
58341827 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCA
58341891 CACTTAGTGC
65 CACTTAGTGC
58341901 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 20 0.31
82 45 0.69
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:58345613 original size:27 final size:27
Alignment explanation
Indices: 58345583--58345760 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
58345573 ATATTGAGTC
* * * *
58345583 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
58345610 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
58345637 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
58345665 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
58345692 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
58345719 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
58345746 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
58345761 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:58345722 original size:82 final size:81
Alignment explanation
Indices: 58345604--58345759 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
58345594 TGCTATATAA
* *
58345604 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
58345669 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
58345686 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
58345750 CACTTAGTGC
65 CACTTAGTGC
58345760 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:58357759 original size:40 final size:40
Alignment explanation
Indices: 58357704--58357785 Score: 155
Period size: 40 Copynumber: 2.0 Consensus size: 40
58357694 ATATAAGATT
58357704 TTTCCTATGCAATTTATCACCGTTTTACTTAAATTCGTTG
1 TTTCCTATGCAATTTATCACCGTTTTACTTAAATTCGTTG
*
58357744 TTTCCTATGCAATTTATCACCTTTTTACTTAAATTCGTTG
1 TTTCCTATGCAATTTATCACCGTTTTACTTAAATTCGTTG
58357784 TT
1 TT
58357786 AAAACTAAGT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.22, C:0.20, G:0.09, T:0.50
Consensus pattern (40 bp):
TTTCCTATGCAATTTATCACCGTTTTACTTAAATTCGTTG
Found at i:58359893 original size:12 final size:12
Alignment explanation
Indices: 58359876--58359943 Score: 59
Period size: 12 Copynumber: 5.5 Consensus size: 12
58359866 AATAATAAAT
58359876 AATATATGATAA
1 AATATATGATAA
58359888 AATATATGATAA
1 AATATATGATAA
*
58359900 AGATA-AAGATAA
1 A-ATATATGATAA
* *
58359912 ACA-ACATAATAAA
1 A-ATATATGAT-AA
58359925 TAATATATGATAA
1 -AATATATGATAA
58359938 AATATA
1 AATATA
58359944 AATAAATAAT
Statistics
Matches: 45, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
11 1 0.02
12 30 0.67
13 8 0.18
14 6 0.13
ACGTcount: A:0.62, C:0.03, G:0.07, T:0.28
Consensus pattern (12 bp):
AATATATGATAA
Found at i:58359912 original size:38 final size:37
Alignment explanation
Indices: 58359869--58359954 Score: 95
Period size: 38 Copynumber: 2.3 Consensus size: 37
58359859 AATTTTTAAT
* *
58359869 AATAAATAATAT-ATGATAAAATATATGATAAAGATA-A
1 AATAAATAATATAAT-AAATAATATATGATAAA-ATATA
* *
58359906 AGATAAACAACATAATAAATAATATATGATAAAATATA
1 A-ATAAATAATATAATAAATAATATATGATAAAATATA
58359944 AATAAATAATA
1 AATAAATAATA
58359955 GATAATGTAT
Statistics
Matches: 40, Mismatches: 6, Indels: 6
0.77 0.12 0.12
Matches are distributed among these distances:
37 12 0.30
38 26 0.65
39 2 0.05
ACGTcount: A:0.64, C:0.02, G:0.06, T:0.28
Consensus pattern (37 bp):
AATAAATAATATAATAAATAATATATGATAAAATATA
Found at i:58360779 original size:18 final size:19
Alignment explanation
Indices: 58360756--58360795 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
58360746 GTATGTATTG
58360756 AAAAAAAAAAC-AGAAACA
1 AAAAAAAAAACAAGAAACA
* *
58360774 AAAAAAATAACAATAAACA
1 AAAAAAAAAACAAGAAACA
58360793 AAA
1 AAA
58360796 TATCACCTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 10 0.53
19 9 0.47
ACGTcount: A:0.82, C:0.10, G:0.03, T:0.05
Consensus pattern (19 bp):
AAAAAAAAAACAAGAAACA
Found at i:58360791 original size:19 final size:17
Alignment explanation
Indices: 58360756--58360795 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 17
58360746 GTATGTATTG
58360756 AAAAAAAAAACAGAAAC
1 AAAAAAAAAACAGAAAC
*
58360773 AAAAAAAATAACAATAAAC
1 AAAAAAAA-AAC-AGAAAC
58360792 AAAA
1 AAAA
58360796 TATCACCTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 8 0.40
18 3 0.15
19 9 0.45
ACGTcount: A:0.82, C:0.10, G:0.03, T:0.05
Consensus pattern (17 bp):
AAAAAAAAAACAGAAAC
Found at i:58361863 original size:44 final size:44
Alignment explanation
Indices: 58361777--58361864 Score: 106
Period size: 44 Copynumber: 2.0 Consensus size: 44
58361767 ATCGAACACG
* * * * *
58361777 GAGATGCCAATTCTGTCATCTTGGATCTGCTTTCTTAAAATACA
1 GAGATGCCAAATCTCTCATCTTCGATCTGCTCTCTGAAAATACA
*
58361821 GAGATGCCAAATCTACT-ATCTTCGATCTGCTCTCTGACAATACA
1 GAGATGCCAAATCT-CTCATCTTCGATCTGCTCTCTGAAAATACA
58361865 TGTAACACCC
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
44 36 0.97
45 1 0.03
ACGTcount: A:0.28, C:0.24, G:0.15, T:0.33
Consensus pattern (44 bp):
GAGATGCCAAATCTCTCATCTTCGATCTGCTCTCTGAAAATACA
Found at i:58362652 original size:35 final size:35
Alignment explanation
Indices: 58362613--58362685 Score: 137
Period size: 35 Copynumber: 2.1 Consensus size: 35
58362603 ACACATTCTT
58362613 TATTCTCGTCAAATCAATCTCACATAAATAATATA
1 TATTCTCGTCAAATCAATCTCACATAAATAATATA
*
58362648 TATTCTCGTCAGATCAATCTCACATAAATAATATA
1 TATTCTCGTCAAATCAATCTCACATAAATAATATA
58362683 TAT
1 TAT
58362686 CACATACCTG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.41, C:0.19, G:0.04, T:0.36
Consensus pattern (35 bp):
TATTCTCGTCAAATCAATCTCACATAAATAATATA
Found at i:58366742 original size:58 final size:57
Alignment explanation
Indices: 58366616--58366783 Score: 284
Period size: 58 Copynumber: 2.9 Consensus size: 57
58366606 GTGCCCACTG
* *
58366616 ACCGATCTCGCACACATAGTGCTCGGTTGAA-GAACTGCACACACAGTGCCTCAATT
1 ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAATTGCACACACAGTGCCTCAATT
58366672 ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAATTCGCACACACAGTGCCTCAATT
1 ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAATT-GCACACACAGTGCCTCAATT
*
58366730 ACTGATCTCGCACACATAGTGCTCGGTTAAAGGAATTTGCACACACAGTGCCTC
1 ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAA-TTGCACACACAGTGCCTC
58366784 TAATCATTCG
Statistics
Matches: 106, Mismatches: 3, Indels: 4
0.94 0.03 0.04
Matches are distributed among these distances:
56 30 0.28
57 4 0.04
58 70 0.66
59 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.23
Consensus pattern (57 bp):
ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAATTGCACACACAGTGCCTCAATT
Found at i:58366771 original size:29 final size:29
Alignment explanation
Indices: 58366623--58366780 Score: 112
Period size: 29 Copynumber: 5.5 Consensus size: 29
58366613 CTGACCGATC
* * *
58366623 TCGCACACATAGTGCTCGGTTGAA-GAAC
1 TCGCACACACAGTGCTCGGTTAAAGGAAT
** **
58366651 T-GCACACACAGTGCCTCAATT-ACCG-AT
1 TCGCACACACAGTG-CTCGGTTAAAGGAAT
*
58366678 CTCGCACACATAGTGCTCGGTTAAAGGAAT
1 -TCGCACACACAGTGCTCGGTTAAAGGAAT
** **
58366708 TCGCACACACAGTGCCTCAATT-ACTG-AT
1 TCGCACACACAGTG-CTCGGTTAAAGGAAT
*
58366736 CTCGCACACATAGTGCTCGGTTAAAGGAAT
1 -TCGCACACACAGTGCTCGGTTAAAGGAAT
*
58366766 TTGCACACACAGTGC
1 TCGCACACACAGTGC
58366781 CTCTAATCAT
Statistics
Matches: 98, Mismatches: 22, Indels: 19
0.71 0.16 0.14
Matches are distributed among these distances:
27 13 0.13
28 20 0.20
29 56 0.57
30 9 0.09
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (29 bp):
TCGCACACACAGTGCTCGGTTAAAGGAAT
Found at i:58367003 original size:43 final size:43
Alignment explanation
Indices: 58366951--58367221 Score: 452
Period size: 43 Copynumber: 6.3 Consensus size: 43
58366941 CCGGCATTAA
* *
58366951 AAGCCTGCTAGGCACGAAGACCTGAATACACATCACCGGCACG
1 AAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACG
*
58366994 AAGCCTGCTAGGCACGAAGGCCCGAATACATATCACCGGCACG
1 AAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACG
* *
58367037 AAGCCTGCTAGGCACGAAGGCCCAAATACACATCATCGGCACG
1 AAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACG
* **
58367080 AAACCTGCTAGGCACGAAGGCCCGAATACACATCATTGGCACG
1 AAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACG
*
58367123 AAGCCTGCTAGGCACGAAGGCCCGAATACACATCATCGGCACG
1 AAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACG
58367166 AAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACG
1 AAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACG
*
58367209 AAGCCTACTAGGC
1 AAGCCTGCTAGGC
58367222 TACACATCAC
Statistics
Matches: 215, Mismatches: 13, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 215 1.00
ACGTcount: A:0.31, C:0.32, G:0.24, T:0.12
Consensus pattern (43 bp):
AAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACG
Found at i:58367184 original size:129 final size:129
Alignment explanation
Indices: 58366954--58367276 Score: 456
Period size: 129 Copynumber: 2.6 Consensus size: 129
58366944 GCATTAAAAG
*
58366954 CCTGCTAGGCACGAAGACCTGAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGA
1 CCTGCTAGGCACGAAGACCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGA
* *
58367019 ATACATATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCAAATACACATCATCGGCACGAAA
66 ATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCAAATACACATCACCGGCACGAAA
* **
58367083 CCTGCTAGGCACGAAGGCCCGAATACACATCATTGGCACGAAGCCTGCTAGGCACGAAGGCCCGA
1 CCTGCTAGGCACGAAGACCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGA
* * *
58367148 ATACACATCATCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAG
66 ATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCAAATACACATCACCGGCACGAAA
* *
58367212 CCTACT----A-G--G---C---TACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCTA
1 CCTGCTAGGCACGAAGACCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGA
58367264 ATACACATCACCG
66 ATACACATCACCG
58367277 AGTTTCATGC
Statistics
Matches: 180, Mismatches: 14, Indels: 13
0.87 0.07 0.06
Matches are distributed among these distances:
116 51 0.28
119 1 0.01
122 1 0.01
124 1 0.01
125 1 0.01
129 125 0.69
ACGTcount: A:0.31, C:0.33, G:0.24, T:0.12
Consensus pattern (129 bp):
CCTGCTAGGCACGAAGACCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGA
ATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCAAATACACATCACCGGCACGAAA
Found at i:58367228 original size:30 final size:30
Alignment explanation
Indices: 58367192--58367251 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
58367182 AAGGCCCGAA
58367192 TACACATCACCGGCACGAAGCCTACTAGGC
1 TACACATCACCGGCACGAAGCCTACTAGGC
*
58367222 TACACATCACCGGCACGAAGCCTGCTAGGC
1 TACACATCACCGGCACGAAGCCTACTAGGC
58367252 ACGAAGGCCC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.28, C:0.37, G:0.22, T:0.13
Consensus pattern (30 bp):
TACACATCACCGGCACGAAGCCTACTAGGC
Found at i:58368710 original size:35 final size:35
Alignment explanation
Indices: 58368671--58368742 Score: 144
Period size: 35 Copynumber: 2.1 Consensus size: 35
58368661 ACACATTCTT
58368671 TATTCTCGTCAGATCAATCTCACATAAATAATATA
1 TATTCTCGTCAGATCAATCTCACATAAATAATATA
58368706 TATTCTCGTCAGATCAATCTCACATAAATAATATA
1 TATTCTCGTCAGATCAATCTCACATAAATAATATA
58368741 TA
1 TA
58368743 ATCACATACC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.40, C:0.19, G:0.06, T:0.35
Consensus pattern (35 bp):
TATTCTCGTCAGATCAATCTCACATAAATAATATA
Found at i:58371586 original size:44 final size:44
Alignment explanation
Indices: 58371523--58371690 Score: 261
Period size: 44 Copynumber: 3.8 Consensus size: 44
58371513 TCGGGCTGTT
58371523 ACAATACAGAGATGCCAAATCTGCTATCTTCGATCTGTTCTCTG
1 ACAATACAGAGATGCCAAATCTGCTATCTTCGATCTGTTCTCTG
*
58371567 ACAATACAGAGATGCCAAATCTGCTATCTGT-GATCTGCTCTCTG
1 ACAATACAGAGATGCCAAATCTGCTATCT-TCGATCTGTTCTCTG
58371611 ACAATACAGAGATGCCAAATCTGCTATCTTCGAT-TCGCTT-TCTG
1 ACAATACAGAGATGCCAAATCTGCTATCTTCGATCT-G-TTCTCTG
* *
58371655 ACAATACAAAGATGCCAAATCTTCTATCTTCGATCT
1 ACAATACAGAGATGCCAAATCTGCTATCTTCGATCT
58371691 TGTAACACCC
Statistics
Matches: 115, Mismatches: 4, Indels: 9
0.90 0.03 0.07
Matches are distributed among these distances:
43 2 0.02
44 110 0.96
45 3 0.03
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31
Consensus pattern (44 bp):
ACAATACAGAGATGCCAAATCTGCTATCTTCGATCTGTTCTCTG
Found at i:58373227 original size:40 final size:40
Alignment explanation
Indices: 58373162--58373336 Score: 269
Period size: 40 Copynumber: 4.4 Consensus size: 40
58373152 CGGATGTAAC
* * * *
58373162 AACCAGCACGAATGCCTTCGAGACTTAACCCAGTAATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
* *
58373202 AACTCGCACGAATGCCTTCGGGACTTAGCCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
* *
58373242 AATCCGCACGAATGCCTTCGGGACTTAGCCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
58373282 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
*
58373322 AACCCGCACAAATGC
1 AACCCGCACGAATGC
58373337 TGTGCACATA
Statistics
Matches: 124, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 124 1.00
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (40 bp):
AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
Found at i:58384506 original size:181 final size:181
Alignment explanation
Indices: 58384202--58384562 Score: 668
Period size: 181 Copynumber: 2.0 Consensus size: 181
58384192 AGTTTTTAAT
*
58384202 CCTTGATTTTCCTTCTCTAGGGCCTGATTACGTGACTGCATCTCTTGGAACTTCTTCTCCCAATA
1 CCTTGATTTTCCTTCTCTAAGGCCTGATTACGTGACTGCATCTCTTGGAACTTCTTCTCCCAATA
** * *
58384267 CTCGGCTTTGGCTCTTTCTTCTTGAATCTCTTGCTGCCACTGCTCTGAAGATCTCCCTAATTCGA
66 CTCAACTTTGGCTCTTTCTTCTTGAATCTCTTGCTGCCACTGCTCTAAAGATCTCCCTAATCCGA
*
58384332 CCCTTTTCAATGTTACCTGGGCCTTCTTCTAGTGCGTCTTTAAATAATCTA
131 CCCTTTTCAACGTTACCTGGGCCTTCTTCTAGTGCGTCTTTAAATAATCTA
58384383 CCTTGATTTTCCTTCTCTAAGGCCTGATTACGTGACTGCATCTCTTGGAACTTCTTCTCCCAATA
1 CCTTGATTTTCCTTCTCTAAGGCCTGATTACGTGACTGCATCTCTTGGAACTTCTTCTCCCAATA
58384448 CTCAACTTTGGCTCTTTCTTCTTGAATCTCTTGCTGCCACTGCTCTAAAGATCTCCCTAATCCGA
66 CTCAACTTTGGCTCTTTCTTCTTGAATCTCTTGCTGCCACTGCTCTAAAGATCTCCCTAATCCGA
58384513 CCCTTTTCAACGTTACCTGGGCCTTCTTCTAGTGCGTCTTTAAATAATCT
131 CCCTTTTCAACGTTACCTGGGCCTTCTTCTAGTGCGTCTTTAAATAATCT
58384563 CAATCTTTCT
Statistics
Matches: 174, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
181 174 1.00
ACGTcount: A:0.17, C:0.29, G:0.14, T:0.39
Consensus pattern (181 bp):
CCTTGATTTTCCTTCTCTAAGGCCTGATTACGTGACTGCATCTCTTGGAACTTCTTCTCCCAATA
CTCAACTTTGGCTCTTTCTTCTTGAATCTCTTGCTGCCACTGCTCTAAAGATCTCCCTAATCCGA
CCCTTTTCAACGTTACCTGGGCCTTCTTCTAGTGCGTCTTTAAATAATCTA
Found at i:58387785 original size:4 final size:4
Alignment explanation
Indices: 58387776--58387820 Score: 56
Period size: 4 Copynumber: 11.0 Consensus size: 4
58387766 GTTTATAGTA
*
58387776 AAAT AAAT -AAT ATAT AAAAT AAAT AAAAT AAAT AAAT AAAT AAAT
1 AAAT AAAT AAAT AAAT -AAAT AAAT -AAAT AAAT AAAT AAAT AAAT
58387821 TTAGAAATAT
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
3 3 0.08
4 26 0.72
5 7 0.19
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (4 bp):
AAAT
Found at i:58387801 original size:9 final size:9
Alignment explanation
Indices: 58387774--58387819 Score: 62
Period size: 9 Copynumber: 5.4 Consensus size: 9
58387764 ATGTTTATAG
58387774 TAAAATAAA
1 TAAAATAAA
*
58387783 T--AATATA
1 TAAAATAAA
58387790 TAAAATAAA
1 TAAAATAAA
58387799 TAAAATAAA
1 TAAAATAAA
58387808 T-AAATAAA
1 TAAAATAAA
58387816 TAAA
1 TAAA
58387820 TTTAGAAATA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
7 6 0.19
8 8 0.25
9 18 0.56
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (9 bp):
TAAAATAAA
Found at i:58387829 original size:16 final size:15
Alignment explanation
Indices: 58387774--58387817 Score: 65
Period size: 16 Copynumber: 3.0 Consensus size: 15
58387764 ATGTTTATAG
58387774 TAAAATAAATAATATA
1 TAAAATAAATAA-ATA
58387790 TAAAATAAATAAA-A
1 TAAAATAAATAAATA
58387804 T-AAATAAATAAATA
1 TAAAATAAATAAATA
58387818 AATTTAGAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
13 11 0.41
14 3 0.11
15 1 0.04
16 12 0.44
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (15 bp):
TAAAATAAATAAATA
Found at i:58389130 original size:17 final size:17
Alignment explanation
Indices: 58389108--58389140 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
58389098 TAAGTGGACT
*
58389108 GTTTAATTTTATTTTTC
1 GTTTAATTTCATTTTTC
58389125 GTTTAATTTCATTTTT
1 GTTTAATTTCATTTTT
58389141 TAATTTTTGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.18, C:0.06, G:0.06, T:0.70
Consensus pattern (17 bp):
GTTTAATTTCATTTTTC
Found at i:58393114 original size:13 final size:15
Alignment explanation
Indices: 58393096--58393132 Score: 51
Period size: 13 Copynumber: 2.5 Consensus size: 15
58393086 TGAACACTTT
58393096 TGTTTTATT-TT-TA
1 TGTTTTATTATTATA
58393109 TGTTTTATTATTATA
1 TGTTTTATTATTATA
58393124 TGTTATTAT
1 TGTT-TTAT
58393133 ACATTTTACA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 9 0.43
14 2 0.10
15 6 0.29
16 4 0.19
ACGTcount: A:0.22, C:0.00, G:0.08, T:0.70
Consensus pattern (15 bp):
TGTTTTATTATTATA
Found at i:58395312 original size:129 final size:129
Alignment explanation
Indices: 58395082--58395333 Score: 346
Period size: 129 Copynumber: 2.0 Consensus size: 129
58395072 TTTTTAATTG
* * * * * * *
58395082 GCATCGATATGTGATTATGTGTAAGACGACGTCTGGGACGTTAGCATGGATATGTGATTATGTGT
1 GCATCGATATGTGATTACGTGTAAAACCACGTCTAGAACGTTAGCATCGATATGTGATTACGTGT
* * *
58395147 AAGACCAAGTCTGGGACGTTGGCATCGATATGTGATTACGTGTAAAACCACGTCTGGGACATTA
66 AAGACCAAGTCTGGGAAGTTGGCATCGATATGTGATTACATGTAAAACCACATCTGGGACATTA
*
58395211 GCATCGATATGTGATTACGTGTAAAACCACGTCTAGAACGTTGGCATCGATATGTGATTACGTGT
1 GCATCGATATGTGATTACGTGTAAAACCACGTCTAGAACGTTAGCATCGATATGTGATTACGTGT
* * *
58395276 AAGACCCTA-TTTGGGATAG-TGGCATCGATATGTGATTACATGTAAGACCACATCTGGG
66 AAGA-CCAAGTCTGGGA-AGTTGGCATCGATATGTGATTACATGTAAAACCACATCTGGG
58395334 GTGTTGGCAT
Statistics
Matches: 107, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
129 103 0.96
130 4 0.04
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (129 bp):
GCATCGATATGTGATTACGTGTAAAACCACGTCTAGAACGTTAGCATCGATATGTGATTACGTGT
AAGACCAAGTCTGGGAAGTTGGCATCGATATGTGATTACATGTAAAACCACATCTGGGACATTA
Found at i:58395342 original size:43 final size:43
Alignment explanation
Indices: 58395079--58395343 Score: 311
Period size: 43 Copynumber: 6.2 Consensus size: 43
58395069 CATTTTTTAA
* * *
58395079 TTGGCATCGATATGTGATTATGTGTAAGACGACGTCTGGGACG
1 TTGGCATCGATATGTGATTACGTGTAAGACCACATCTGGGACG
* * *
58395122 TTAGCATGGATATGTGATTATGTGTAAGACCA-AGTCTGGGACG
1 TTGGCATCGATATGTGATTACGTGTAAGACCACA-TCTGGGACG
* * *
58395165 TTGGCATCGATATGTGATTACGTGTAAAACCACGTCTGGGACA
1 TTGGCATCGATATGTGATTACGTGTAAGACCACATCTGGGACG
* * * * *
58395208 TTAGCATCGATATGTGATTACGTGTAAAACCACGTCTAGAACG
1 TTGGCATCGATATGTGATTACGTGTAAGACCACATCTGGGACG
* *
58395251 TTGGCATCGATATGTGATTACGTGTAAGACC-CTATTTGGGATAG
1 TTGGCATCGATATGTGATTACGTGTAAGACCAC-ATCTGGGA-CG
* **
58395295 -TGGCATCGATATGTGATTACATGTAAGACCACATCTGGGGTG
1 TTGGCATCGATATGTGATTACGTGTAAGACCACATCTGGGACG
58395337 TTGGCAT
1 TTGGCAT
58395344 TGTACGATAT
Statistics
Matches: 191, Mismatches: 25, Indels: 12
0.84 0.11 0.05
Matches are distributed among these distances:
42 2 0.01
43 187 0.98
44 2 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (43 bp):
TTGGCATCGATATGTGATTACGTGTAAGACCACATCTGGGACG
Found at i:58395537 original size:19 final size:18
Alignment explanation
Indices: 58395513--58395556 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 18
58395503 GATGCTAATT
58395513 ATATATGATGCAAATGAAA
1 ATATAT-ATGCAAATGAAA
* *
58395532 ATATATATGTATATGAAA
1 ATATATATGCAAATGAAA
58395550 AGTATAT
1 A-TATAT
58395557 TCGGCCAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 11 0.50
19 11 0.50
ACGTcount: A:0.50, C:0.02, G:0.14, T:0.34
Consensus pattern (18 bp):
ATATATATGCAAATGAAA
Found at i:58399574 original size:28 final size:28
Alignment explanation
Indices: 58399488--58399578 Score: 105
Period size: 28 Copynumber: 3.2 Consensus size: 28
58399478 GTGACAGGGT
* *
58399488 CACCAAATACAGATAA-TCGTGGCAGAGC
1 CACCAGAT-CAGATAATTTGTGGCAGAGC
*
58399516 CACCAGAAT-AGATATATATGTGGCAGAGC
1 CACCAG-ATCAGATA-ATTTGTGGCAGAGC
*
58399545 CACCAGATCAGATAATTTGTGGCATAGC
1 CACCAGATCAGATAATTTGTGGCAGAGC
58399573 CACCAG
1 CACCAG
58399579 GACGCTTCCT
Statistics
Matches: 54, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
27 5 0.09
28 26 0.48
29 23 0.43
ACGTcount: A:0.36, C:0.23, G:0.22, T:0.19
Consensus pattern (28 bp):
CACCAGATCAGATAATTTGTGGCAGAGC
Found at i:58420738 original size:20 final size:20
Alignment explanation
Indices: 58420711--58420757 Score: 60
Period size: 22 Copynumber: 2.3 Consensus size: 20
58420701 TAAATATAAG
*
58420711 ATAATAAAC-AAATAAAAAC
1 ATAATAAACAAAAGAAAAAC
58420730 ATGAATAAACTAAAAGAAAAAC
1 AT-AATAAAC-AAAAGAAAAAC
58420752 ATAATA
1 ATAATA
58420758 CATGCAAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
19 2 0.08
20 7 0.29
21 4 0.17
22 11 0.46
ACGTcount: A:0.70, C:0.09, G:0.04, T:0.17
Consensus pattern (20 bp):
ATAATAAACAAAAGAAAAAC
Found at i:58422485 original size:41 final size:40
Alignment explanation
Indices: 58422432--58422601 Score: 141
Period size: 41 Copynumber: 4.2 Consensus size: 40
58422422 AGTCCGACTC
* *
58422432 TTAG-CACCGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
1 TTAGACACTGGCTCAAAAGCCCTTCGAAACCAAGCTCGGA
** * *
58422471 TTAGACTACTGGCTCGCAGGCCCTTCGAAACTAAG-TCCGG-
1 TTAGAC-ACTGGCTCAAAAGCCCTTCGAAACCAAGCT-CGGA
* * *
58422511 TTATGACACTGGCTCTAAAAAGCCCTTCGAAACTAAGTTTGGTTA
1 TTA-GACACTGGCTC--AAAAGCCCTTCGAAACCAAGCTCGG--A
* *
58422556 TTAG-CACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGAA
1 TTAGACACTGGCTCAAAAGCCCTTCGAAACCAAGCTCGGA
58422595 TTTAGAC
1 -TTAGAC
58422602 CCCGATTAGC
Statistics
Matches: 104, Mismatches: 15, Indels: 22
0.74 0.11 0.16
Matches are distributed among these distances:
39 5 0.05
40 17 0.16
41 49 0.47
42 19 0.18
43 10 0.10
44 1 0.01
45 3 0.03
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (40 bp):
TTAGACACTGGCTCAAAAGCCCTTCGAAACCAAGCTCGGA
Found at i:58422539 original size:42 final size:41
Alignment explanation
Indices: 58422434--58422581 Score: 142
Period size: 41 Copynumber: 3.6 Consensus size: 41
58422424 TCCGACTCTT
* * *
58422434 AGCACCGGCTCAAAAGCCCTTCGAGACCAAG-CTCGGATTA-G
1 AGCACTGGCTCAAAAGCCCTTCGAAACTAAGTC-CGG-TTATG
** *
58422475 A-CTACTGGCTCGCAGGCCCTTCGAAACTAAGTCCGGTTATG
1 AGC-ACTGGCTCAAAAGCCCTTCGAAACTAAGTCCGGTTATG
** *
58422516 A-CACTGGCTCTAAAAAGCCCTTCGAAACTAAGTTTGGTTATT
1 AGCACTGGCTC--AAAAGCCCTTCGAAACTAAGTCCGGTTATG
58422558 AGCACTGGCTCAAAAGCCCTTCGA
1 AGCACTGGCTCAAAAGCCCTTCGA
58422582 GACCAAGCTC
Statistics
Matches: 89, Mismatches: 12, Indels: 12
0.79 0.11 0.11
Matches are distributed among these distances:
40 12 0.13
41 42 0.47
42 26 0.29
43 9 0.10
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (41 bp):
AGCACTGGCTCAAAAGCCCTTCGAAACTAAGTCCGGTTATG
Found at i:58424912 original size:23 final size:22
Alignment explanation
Indices: 58424869--58424926 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
58424859 AAAAGGTATC
* *
58424869 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
58424890 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
58424913 TGCATATCATATCT
1 TACAAATCATATCT
58424927 AAGATTGCGA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:58424929 original size:19 final size:19
Alignment explanation
Indices: 58424905--58425030 Score: 183
Period size: 19 Copynumber: 6.9 Consensus size: 19
58424895 AATCATATCT
58424905 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
58424924 TCTAAGATTGC-GATCATA
1 TCTAAGATTGCATATCATA
58424942 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
58424959 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
58424978 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
*
58424996 GCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
*
58425013 TCTAAGATTGTATATCAT
1 TCTAAGATTGCATATCAT
58425031 TGAAGATTAT
Statistics
Matches: 98, Mismatches: 4, Indels: 10
0.88 0.04 0.09
Matches are distributed among these distances:
17 31 0.32
18 31 0.32
19 36 0.37
ACGTcount: A:0.36, C:0.14, G:0.13, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:58424961 original size:35 final size:36
Alignment explanation
Indices: 58424905--58425022 Score: 177
Period size: 35 Copynumber: 3.3 Consensus size: 36
58424895 AATCATATCT
*
58424905 TCTAAGATTGCATATCATATCTAAGATTGCGATCATA
1 TCTAAGATTGC-TATCATATCTAAGATTGCTATCATA
58424942 TCTAAGATTG-TATCATATCTAAGATTGCATATCATA
1 TCTAAGATTGCTATCATATCTAAGATTGC-TATCATA
* *
58424978 TCTAAGATTGCAATCATAGCTAAGATTG-TATCATA
1 TCTAAGATTGCTATCATATCTAAGATTGCTATCATA
58425013 TCTAAGATTG
1 TCTAAGATTG
58425023 TATATCATTG
Statistics
Matches: 76, Mismatches: 3, Indels: 6
0.89 0.04 0.07
Matches are distributed among these distances:
35 35 0.46
36 16 0.21
37 25 0.33
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.36
Consensus pattern (36 bp):
TCTAAGATTGCTATCATATCTAAGATTGCTATCATA
Found at i:58424973 original size:54 final size:54
Alignment explanation
Indices: 58424905--58425030 Score: 225
Period size: 54 Copynumber: 2.3 Consensus size: 54
58424895 AATCATATCT
* *
58424905 TCTAAGATTGCATATCATATCTAAGATTGCGATCATATCTAAGATTGTATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGCAATCATAGCTAAGATTGTATCATA
58424959 TCTAAGATTGCATATCATATCTAAGATTGCAATCATAGCTAAGATTGTATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGCAATCATAGCTAAGATTGTATCATA
*
58425013 TCTAAGATTGTATATCAT
1 TCTAAGATTGCATATCAT
58425031 TGAAGATTAT
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 69 1.00
ACGTcount: A:0.36, C:0.14, G:0.13, T:0.37
Consensus pattern (54 bp):
TCTAAGATTGCATATCATATCTAAGATTGCAATCATAGCTAAGATTGTATCATA
Found at i:58425038 original size:17 final size:17
Alignment explanation
Indices: 58424905--58425025 Score: 161
Period size: 17 Copynumber: 6.8 Consensus size: 17
58424895 AATCATATCT
58424905 TCTAAGATTGCATATCATA
1 TCTAAGATTG--TATCATA
*
58424924 TCTAAGATTGCGATCATA
1 TCTAAGATTG-TATCATA
58424942 TCTAAGATTGTATCATA
1 TCTAAGATTGTATCATA
58424959 TCTAAGATTGCATATCATA
1 TCTAAGATTG--TATCATA
*
58424978 TCTAAGATTGCAATCATA
1 TCTAAGATTG-TATCATA
*
58424996 GCTAAGATTGTATCATA
1 TCTAAGATTGTATCATA
58425013 TCTAAGATTGTAT
1 TCTAAGATTGTAT
58425026 ATCATTGAAG
Statistics
Matches: 92, Mismatches: 8, Indels: 6
0.87 0.08 0.06
Matches are distributed among these distances:
17 34 0.37
18 31 0.34
19 27 0.29
ACGTcount: A:0.36, C:0.14, G:0.13, T:0.37
Consensus pattern (17 bp):
TCTAAGATTGTATCATA
Found at i:58425492 original size:31 final size:30
Alignment explanation
Indices: 58425427--58425485 Score: 73
Period size: 31 Copynumber: 1.9 Consensus size: 30
58425417 GTTATCTTCG
* * *
58425427 ATCTACTCCCCGTCTAATACAGGCTTCTTCA
1 ATCTACTCCCCGTCTAATACAAGATGC-TCA
58425458 ATCTACTCCCCGTCTAATACAAAGATGC
1 ATCTACTCCCCGTCTAATAC-AAGATGC
58425486 CAAATCTGTT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
31 20 0.83
32 4 0.17
ACGTcount: A:0.27, C:0.34, G:0.10, T:0.29
Consensus pattern (30 bp):
ATCTACTCCCCGTCTAATACAAGATGCTCA
Found at i:58425513 original size:76 final size:76
Alignment explanation
Indices: 58425382--58425524 Score: 214
Period size: 76 Copynumber: 1.9 Consensus size: 76
58425372 GGAAGGCGAT
* * * * *
58425382 ATCTGCTCCCTGTCTAATACAGAGACGTCAAATCTGTTATCTTCGATCTACTCCCCGTCTAATAC
1 ATCTACTCCCCGTCTAATACAAAGACGCCAAATCTGTTATCTCCGATCTACTCCCCGTCTAATAC
58425447 AGGCTTCTTCA
66 AGGCTTCTTCA
* * *
58425458 ATCTACTCCCCGTCTAATACAAAGATGCCAAATCTGTTATCTCCGATTTGCTCCCCGTCTAATAC
1 ATCTACTCCCCGTCTAATACAAAGACGCCAAATCTGTTATCTCCGATCTACTCCCCGTCTAATAC
58425523 AG
66 AG
58425525 AGATGCCAAA
Statistics
Matches: 59, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
76 59 1.00
ACGTcount: A:0.25, C:0.31, G:0.13, T:0.31
Consensus pattern (76 bp):
ATCTACTCCCCGTCTAATACAAAGACGCCAAATCTGTTATCTCCGATCTACTCCCCGTCTAATAC
AGGCTTCTTCA
Found at i:58425697 original size:78 final size:78
Alignment explanation
Indices: 58425568--58425937 Score: 512
Period size: 78 Copynumber: 4.7 Consensus size: 78
58425558 ATGTAAACAC
* *
58425568 ATGAAGGTCAGATCTGCTATGTCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTACTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
58425633 TGGATCTGCTTCA
66 TGGATCTGCTTCA
* *
58425646 ATGAAGGTCCA-ATCTATTATGTCTTCGATCTCCTCCCCGTCTAATACAGAGATGCCAAATCATC
1 ATGAAGGT-CAGATCTACTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
58425710 TTGGATCTGCTTCA
65 TTGGATCTGCTTCA
* * * *
58425724 ATGAAGATCATATCTGCTGTGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTACTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
*
58425789 TGGATCTACTTCA
66 TGGATCTGCTTCA
* * * *
58425802 ATTAAGGTCTA-ATCTATTATTTCTTCGATCTGCTCCCCGTATAATACAGAGATGCCAAATCATC
1 ATGAAGGTC-AGATCTACTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
58425866 TTGGATCTGCTTCA
65 TTGGATCTGCTTCA
* * * * * **
58425880 ATGAAGATCAGATTTGA-TGTGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAA
1 ATGAAGGTCAGATCT-ACTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
58425938 GTTTGTTTCT
Statistics
Matches: 259, Mismatches: 28, Indels: 10
0.87 0.09 0.03
Matches are distributed among these distances:
77 3 0.01
78 252 0.97
79 4 0.02
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.33
Consensus pattern (78 bp):
ATGAAGGTCAGATCTACTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
TGGATCTGCTTCA
Found at i:58425852 original size:156 final size:156
Alignment explanation
Indices: 58425568--58425937 Score: 596
Period size: 156 Copynumber: 2.4 Consensus size: 156
58425558 ATGTAAACAC
* * *
58425568 ATGAAGGTCAGATCTGCTATGTCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGATCAGATCTGCTGTGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
* *
58425633 TGGATCTGCTTCAATGAAGGTCCAATCTATTATGTCTTCGATCTCCTCCCCGTCTAATACAGAGA
66 TGGATCTACTTCAATGAAGGTCCAATCTATTATGTCTTCGATCTCCTCCCCGTATAATACAGAGA
58425698 TGCCAAATCATCTTGGATCTGCTTCA
131 TGCCAAATCATCTTGGATCTGCTTCA
*
58425724 ATGAAGATCATATCTGCTGTGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGATCAGATCTGCTGTGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
* * * *
58425789 TGGATCTACTTCAATTAAGGTCTAATCTATTATTTCTTCGATCTGCTCCCCGTATAATACAGAGA
66 TGGATCTACTTCAATGAAGGTCCAATCTATTATGTCTTCGATCTCCTCCCCGTATAATACAGAGA
58425854 TGCCAAATCATCTTGGATCTGCTTCA
131 TGCCAAATCATCTTGGATCTGCTTCA
* * * * **
58425880 ATGAAGATCAGATTTGATGTGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAA
1 ATGAAGATCAGATCTGCTGTGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
58425938 GTTTGTTTCT
Statistics
Matches: 197, Mismatches: 17, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
156 197 1.00
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.33
Consensus pattern (156 bp):
ATGAAGATCAGATCTGCTGTGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
TGGATCTACTTCAATGAAGGTCCAATCTATTATGTCTTCGATCTCCTCCCCGTATAATACAGAGA
TGCCAAATCATCTTGGATCTGCTTCA
Found at i:58426068 original size:87 final size:87
Alignment explanation
Indices: 58425967--58426331 Score: 577
Period size: 87 Copynumber: 4.2 Consensus size: 87
58425957 TCTCTGACAG
* * *** *
58425967 TACAGAGATGCCAAATCATCTTAGATCTGCTTCAGTGTAAACACGTGAAAGCCAAATCTGCTATG
1 TACAGAGACGCCAAATCATCTTAGATTTGCTTCAACATAAACACGTGAAAGCCAAATCAGCTATG
58426032 TCTTCGATCTGCTCCCTGCCAA
66 TCTTCGATCTGCTCCCTGCCAA
* * *
58426054 TATAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAACCAAATCAGCTATG
1 TACAGAGACGCCAAATCATCTTAGATTTGCTTCAACATAAACACGTGAAAGCCAAATCAGCTATG
* *
58426119 TCCTCAATCTGCTCCCTGCCAA
66 TCTTCGATCTGCTCCCTGCCAA
* *
58426141 TACAGAGACGCCAAATCATCTTAGATTTGCTTCAACATAAACATGTGAACGCCAAATCAGCTATG
1 TACAGAGACGCCAAATCATCTTAGATTTGCTTCAACATAAACACGTGAAAGCCAAATCAGCTATG
58426206 TCTTCGATCTGCTCCCTGCCAA
66 TCTTCGATCTGCTCCCTGCCAA
* *
58426228 TACAGAGACACCAAATCATCTTAGATTTGCTTTAACATAAACACGTGAAAGCCAAATCAGCTATG
1 TACAGAGACGCCAAATCATCTTAGATTTGCTTCAACATAAACACGTGAAAGCCAAATCAGCTATG
*
58426293 TCTTCGATCTGCTCCCTGCTAA
66 TCTTCGATCTGCTCCCTGCCAA
*
58426315 TACAAAGACGCCAAATC
1 TACAGAGACGCCAAATC
58426332 TGCTGTCTTC
Statistics
Matches: 255, Mismatches: 23, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
87 255 1.00
ACGTcount: A:0.32, C:0.27, G:0.15, T:0.26
Consensus pattern (87 bp):
TACAGAGACGCCAAATCATCTTAGATTTGCTTCAACATAAACACGTGAAAGCCAAATCAGCTATG
TCTTCGATCTGCTCCCTGCCAA
Found at i:58426343 original size:44 final size:44
Alignment explanation
Indices: 58426293--58426638 Score: 326
Period size: 44 Copynumber: 7.9 Consensus size: 44
58426283 ATCAGCTATG
* * * * *
58426293 TCTTCGATCTGCTCCCTGCTAATACAAAGACGCCAAATCTGCTG
1 TCTTCGATCTGCTCTCTGCCAATACAGAGACGCCAAATCTGTTA
*
58426337 TCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTGTTA
1 TCTTCGATCTGCTCTCTGCCAATACAGAGACGCCAAATCTGTTA
* *
58426381 TCTTCGAACTGCTCTCTGCCAATACAGAGATGCCAAATCTGTTA
1 TCTTCGATCTGCTCTCTGCCAATACAGAGACGCCAAATCTGTTA
* *
58426425 TCTTCGATCTGCTCTCTGACAATACAGAGACACCAAATC----A
1 TCTTCGATCTGCTCTCTGCCAATACAGAGACGCCAAATCTGTTA
* * ** * * * * *
58426465 TCTTGGATTTGCT-TCAACGTAA-ACACGTAAAAGCCGAATCAGTTA
1 TCTTCGATCTGCTCTCTGC-CAATACA-G-AGACGCCAAATCTGTTA
* ** * * * *
58426510 TGTTTTCGATCTATTCCCTGCCAAAATAGAGATGCCAAATCTGTTA
1 --TCTTCGATCTGCTCTCTGCCAATACAGAGACGCCAAATCTGTTA
* *
58426556 TCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTGTCA
1 TCTTCGATCTGCTCTCTGCCAATACAGAGACGCCAAATCTGTTA
* * *
58426600 TCTTTGATCTGCTCCCTGACAATACAGAGACGCCAAATC
1 TCTTCGATCTGCTCTCTGCCAATACAGAGACGCCAAATC
58426639 ATCTTGGATC
Statistics
Matches: 245, Mismatches: 46, Indels: 22
0.78 0.15 0.07
Matches are distributed among these distances:
39 5 0.02
40 15 0.06
41 8 0.03
44 188 0.77
45 1 0.00
46 13 0.05
47 11 0.04
48 4 0.02
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.29
Consensus pattern (44 bp):
TCTTCGATCTGCTCTCTGCCAATACAGAGACGCCAAATCTGTTA
Found at i:58426460 original size:219 final size:219
Alignment explanation
Indices: 58426206--58426638 Score: 650
Period size: 219 Copynumber: 2.0 Consensus size: 219
58426196 ATCAGCTATG
* *
58426206 TCTTCGATCTGCTCCCTGCCAATACAGAGACACCAAATCATCTTAGATTTGCTTTAACATAAACA
1 TCTTCGATCTGCTCCCTGACAATACAGAGACACCAAATCATCTTAGATTTGCTTCAACATAAACA
* * * *
58426271 CGTGAAAGCCAAATCAGCTATGTCTTCGATCTGCTCCCTGCTAATACAAAGACGCCAAATCTGCT
66 CGTAAAAGCCAAATCAGCTATGTCTTCGATCTACTCCCTGCCAAAACAAAGACGCCAAATCTGCT
* * * *
58426336 GTCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTGTTATCTTCGAACTGCTCTCTGCC
131 ATCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTGTCATCTTCGAACTGCTCCCTGAC
*
58426401 AATACAGAGATGCCAAATCTGTTA
196 AATACAGAGACGCCAAATCTGTTA
* * *
58426425 TCTTCGATCTGCTCTCTGACAATACAGAGACACCAAATCATCTTGGATTTGCTTCAACGTAAACA
1 TCTTCGATCTGCTCCCTGACAATACAGAGACACCAAATCATCTTAGATTTGCTTCAACATAAACA
* * * * * * * *
58426490 CGTAAAAGCCGAATCAGTTATGTTTTCGATCTATTCCCTGCCAAAATAGAGATGCCAAATCTGTT
66 CGTAAAAGCCAAATCAGCTATGTCTTCGATCTACTCCCTGCCAAAACAAAGACGCCAAATCTGCT
* *
58426555 ATCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTGTCATCTTTGATCTGCTCCCTGAC
131 ATCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTGTCATCTTCGAACTGCTCCCTGAC
58426620 AATACAGAGACGCCAAATC
196 AATACAGAGACGCCAAATC
58426639 ATCTTGGATC
Statistics
Matches: 190, Mismatches: 24, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
219 190 1.00
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.29
Consensus pattern (219 bp):
TCTTCGATCTGCTCCCTGACAATACAGAGACACCAAATCATCTTAGATTTGCTTCAACATAAACA
CGTAAAAGCCAAATCAGCTATGTCTTCGATCTACTCCCTGCCAAAACAAAGACGCCAAATCTGCT
ATCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTGTCATCTTCGAACTGCTCCCTGAC
AATACAGAGACGCCAAATCTGTTA
Found at i:58426520 original size:175 final size:175
Alignment explanation
Indices: 58426339--58426655 Score: 535
Period size: 175 Copynumber: 1.8 Consensus size: 175
58426329 ATCTGCTGTC
* * *
58426339 TTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTGTTATCTTCGAACTGCTCTCTGCCAAT
1 TTCGATCTACTCCCTGCCAAAACAGAGATGCCAAATCTGTTATCTTCGAACTGCTCTCTGCCAAT
* *
58426404 ACAGAGATGCCAAATCTGTTATCTTCGATCTGCTCTCTGACAATACAGAGACACCAAATCATCTT
66 ACAGAGATGCCAAATCTGTCATCTTCGATCTGCTCCCTGACAATACAGAGACACCAAATCATCTT
*
58426469 GGATTTGCTTCAACGTAAACACGTAAAAGCCGAATCAGTTATGTT
131 GGATCTGCTTCAACGTAAACACGTAAAAGCCGAATCAGTTATGTT
* * *
58426514 TTCGATCTATTCCCTGCCAAAATAGAGATGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCAAT
1 TTCGATCTACTCCCTGCCAAAACAGAGATGCCAAATCTGTTATCTTCGAACTGCTCTCTGCCAAT
* *
58426579 ACAGAGATGCCAAATCTGTCATCTTTGATCTGCTCCCTGACAATACAGAGACGCCAAATCATCTT
66 ACAGAGATGCCAAATCTGTCATCTTCGATCTGCTCCCTGACAATACAGAGACACCAAATCATCTT
58426644 GGATCTGCTTCA
131 GGATCTGCTTCA
58426656 GTGTAAATAC
Statistics
Matches: 131, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
175 131 1.00
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.30
Consensus pattern (175 bp):
TTCGATCTACTCCCTGCCAAAACAGAGATGCCAAATCTGTTATCTTCGAACTGCTCTCTGCCAAT
ACAGAGATGCCAAATCTGTCATCTTCGATCTGCTCCCTGACAATACAGAGACACCAAATCATCTT
GGATCTGCTTCAACGTAAACACGTAAAAGCCGAATCAGTTATGTT
Found at i:58432692 original size:20 final size:20
Alignment explanation
Indices: 58432665--58432711 Score: 60
Period size: 22 Copynumber: 2.3 Consensus size: 20
58432655 TAAATATAAG
*
58432665 ATAATAAAC-AAATAAAAAC
1 ATAATAAACAAAAGAAAAAC
58432684 ATGAATAAACTAAAAGAAAAAC
1 AT-AATAAAC-AAAAGAAAAAC
58432706 ATAATA
1 ATAATA
58432712 CATGCAAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
19 2 0.08
20 7 0.29
21 4 0.17
22 11 0.46
ACGTcount: A:0.70, C:0.09, G:0.04, T:0.17
Consensus pattern (20 bp):
ATAATAAACAAAAGAAAAAC
Found at i:58437198 original size:27 final size:27
Alignment explanation
Indices: 58437167--58437344 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
58437157 TAAATTGTAC
58437167 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
58437194 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
58437220 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
58437248 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
58437276 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
58437303 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
58437330 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
58437345 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:58437281 original size:82 final size:81
Alignment explanation
Indices: 58437168--58437323 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
58437158 AAATTGTACA
* *
58437168 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
58437232 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
58437249 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
58437314 TGCGAGTTGA
65 TGCGAATTGA
58437324 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:58437335 original size:82 final size:81
Alignment explanation
Indices: 58437164--58437344 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
58437154 GATTAAATTG
* *
58437164 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
58437229 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
58437245 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
58437309 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
58437327 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
58437345 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:58439624 original size:98 final size:98
Alignment explanation
Indices: 58439455--58439647 Score: 332
Period size: 98 Copynumber: 2.0 Consensus size: 98
58439445 AATAACAACT
* *
58439455 TAAAATGATTAAACTTTTGCTAGACCTACTAGAGTTTTTAACAATGAACAAGATACTTAAAAGTT
1 TAAAATGATTAAACTTTTGCTAGAACTACTAGAGTTTTTAACAACGAACAAGATACTTAAAAGTT
58439520 TTGTAAAAGATCACTACGAGGGTTTTAATAACC
66 TTGTAAAAGATCACTACGAGGGTTTTAATAACC
* *
58439553 TAAAATGATTAAACTTTTGCTAGAACTACTTGAGTTTTTAACAACGAACAAGATACTTAAAATTT
1 TAAAATGATTAAACTTTTGCTAGAACTACTAGAGTTTTTAACAACGAACAAGATACTTAAAAGTT
* *
58439618 TTGTAAAAGATTACTACTAGGGTTTTAATA
66 TTGTAAAAGATCACTACGAGGGTTTTAATA
58439648 TAGTACGGAC
Statistics
Matches: 89, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
98 89 1.00
ACGTcount: A:0.40, C:0.12, G:0.13, T:0.35
Consensus pattern (98 bp):
TAAAATGATTAAACTTTTGCTAGAACTACTAGAGTTTTTAACAACGAACAAGATACTTAAAAGTT
TTGTAAAAGATCACTACGAGGGTTTTAATAACC
Found at i:58450644 original size:43 final size:42
Alignment explanation
Indices: 58450544--58450648 Score: 122
Period size: 43 Copynumber: 2.5 Consensus size: 42
58450534 TTACGAGATG
* *
58450544 TGATTACATGTAAGACCATGTATAGGACATTGGCATCATTAA
1 TGATTACATGTAAGACCATGTATAGGACAGTGGCATCAATAA
* * *
58450586 TCGATTTCATTTAAGACCCTGT-TCAGGACAGTGGCATCAATATA
1 T-GATTACATGTAAGACCATGTAT-AGGACAGTGGCATCAATA-A
*
58450630 TGATAACATGTAAGACCAT
1 TGATTACATGTAAGACCAT
58450649 ATTTTGGATA
Statistics
Matches: 51, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
42 2 0.04
43 47 0.92
44 2 0.04
ACGTcount: A:0.34, C:0.17, G:0.18, T:0.30
Consensus pattern (42 bp):
TGATTACATGTAAGACCATGTATAGGACAGTGGCATCAATAA
Found at i:58454941 original size:6 final size:7
Alignment explanation
Indices: 58454914--58454973 Score: 54
Period size: 7 Copynumber: 8.6 Consensus size: 7
58454904 AGGATTGAGG
58454914 ATTGAAA
1 ATTGAAA
58454921 ATTCG-AA
1 ATT-GAAA
58454928 ATTGAAA
1 ATTGAAA
58454935 ATT-AAA
1 ATTGAAA
*
58454941 ATTTGAAG
1 A-TTGAAA
58454949 ATTGAAA
1 ATTGAAA
58454956 ATAT-AAA
1 AT-TGAAA
*
58454963 ATTGGAA
1 ATTGAAA
58454970 ATTG
1 ATTG
58454974 GGGATTGAAG
Statistics
Matches: 44, Mismatches: 3, Indels: 12
0.75 0.05 0.20
Matches are distributed among these distances:
6 6 0.14
7 33 0.75
8 5 0.11
ACGTcount: A:0.52, C:0.02, G:0.15, T:0.32
Consensus pattern (7 bp):
ATTGAAA
Found at i:58455854 original size:3 final size:3
Alignment explanation
Indices: 58455846--58455889 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
58455836 CCAATATATT
58455846 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
58455890 TAAAATTATC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Done.